RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BCAS3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059439

Ensembl transcript IDs: ENSMUST00000074875.11, ENSMUST00000092821.10, ENSMUST00000092822.5, ENSMUST00000108056.8, ENSMUST00000108061.8, ENSMUST00000108062.8, ENSMUST00000138423.8, ENSMUST00000142596.8, ENSMUST00000144276.2, ENSMUST00000149662.2, ENSMUST00000154396.8

Found 566 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCCAGTGCGGGACGTTGTGTGCAAAGAGAGAAGGGACTGAGTTTCTaGAGTCTCTTTGGGCCACAGCCCCCACTGACAGGAGTGGGGGAG +
Preference number: 1 (lower is better)
Translates to: SSAGRCVQREKGLSF*SLFGPQPPLTGVGE
Trigger: CTCCCCCACTCCTGTCAGTGGGGGCTGTGGCCCAAAGAGACTGCAGAAACTCAGTCCCTTCTCTCTTTGCACACAACGTCCCGCACTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR TCA 90 bp CTGCGATACCATATGGGAGGAATCCCAGAGAACTTTACACAAACATaGAGTACAAGTACAGAGATGATGACAGGCCTACTGGAGGAACAA +
Preference number: 1 (lower is better)
Translates to: LRYHMGGIPENFTQT*STSTEMMTGLLEEQ
Trigger: TTGTTCCTCCAGTAGGCCTGTCATCATCTCTGTACTTGTACTTCATGTTTGTGTAAAGTTCTCTGGGATTCCTCCCATATGGTATCGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
3UTR TCA 90 bp AGAGATGATGACAGGCCTACTGGAGGAACAACAAATATTTCTTACTaGATGGCAGTACCAGGCCAGTACATTAAGAATGTTCTGAAATAC +
Preference number: 1 (lower is better)
Translates to: RDDDRPTGGTTNISY*MAVPGQYIKNVLKY
Trigger: GTATTTCAGAACATTCTTAATGTACTGGCCTGGTACTGCCATTCAGTAAGAAATATTTGTTGTTCCTCCAGTAGGCCTGTCATCATCTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
3UTR-3UTR GCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATGTGGGAACAGAGGCGTaGGGGACAGGGGTGGTGGTG +
Preference number: 2 (lower is better)
Translates to: AGVPGGNVHPSLNWARADVGTEA*GTGVVV
Trigger: CACCACCACCCCTGTCCCGCACGCCTCTGTTCCCAC...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR GCA 90 bp GGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCCGAAGTTTCTTGGGATaGTGCCGCTGGTGGAGCCGG +
Preference number: 2 (lower is better)
Translates to: GEEAERLALVGRERRSVARSFLG*CRWWSR
Trigger: CCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCG...GGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
3UTR-3UTR GCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCGTGGGAACAGAGGCGTaGGGGACAGGGGTGGTGGTG +
Preference number: 2 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPVGTEA*GTGVVV
Trigger: CACCACCACCCCTGTCCCGCACGCCTCTGTTCCCAC...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR GCA 90 bp GAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCATCAGTTTCTTGGGATGCTaGCGCTGGTGGAGCCGGAGC +
Preference number: 2 (lower is better)
Translates to: EEAERLALVGRERRSVAISFLGC*RWWSRS
Trigger: GCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACT...GATGGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
3UTR-3UTR TCA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGGGCCACAGCCCCCACTaGCAGGAGTGGGGGAGGTCA +
Preference number: 2 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRGHSPH*QEWGRS
Trigger: TGACCTCCCCCACTCCTGTCAGTGGGGGCTGTGGCC...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR GCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGGTGGGAACAGAGGCGTaGGGGACAGGGGTGGTGGTG +
Preference number: 2 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQVGTEA*GTGVVV
Trigger: CACCACCACCCCTGTCCCGCACGCCTCTGTTCCCAC...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCGCGGGACAGGGGTGGTaGTGGTGGTGTAGGGAGATG +
Preference number: 2 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPAGQGW*WWCREM
Trigger: CATCTCCCTACACCACCACCACCACCCCTGTCCCGC...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp GGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTGCGGGACAGGGGTGGTaGTGGTGGTGTAGGGAGATG +
Preference number: 2 (lower is better)
Translates to: GLGLMSTKMPGWIFQLSPAGQGW*WWCREM
Trigger: CATCTCCCTACACCACCACCACCACCCCTGTCCCGC...AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR TCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATTCGTCCAGTTTGGGATaGACAGCTGTTGCCACTAAG +
Preference number: 2 (lower is better)
Translates to: AGVPGGNVHPSLNWARADSSSLG*TAVATK
Trigger: CTTAGTGGCAACAGCTGTTCATCCCAAACTGGACGA...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCTCAGAAGCAGGTGGCTaGTGCCTAGGGGAAGCCAGT +
Preference number: 2 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPSEAGG*CLGEAS
Trigger: ACTGGCTTCCCCTAGGCACCAGCCACCTGCTTCTGA...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
3UTR CAA 90 bp GTTTGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTaGAGGAGACTGAAAAGGGTGGGAACAGAGGCGTGCGGGACAGGG +
Preference number: 2 (lower is better)
Translates to: VWDEQLLPLSLGKVG*RRLKRVGTEACGTG
Trigger: CCCTGTCCCGCACGCCTCTGTTCCCACCCTTTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGAGAGGCCCTAAGATCTaGCCCCTGTTCCAGTCCCCT +
Preference number: 2 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQRGPKI*PLFQSP
Trigger: AGGGGACTGGAACAGGGGCCAGATCTTAGGGCCTCT...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGCATCCCAGCCTGAACTaGGCTAGGGCTGATGTCCAC +
Preference number: 2 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQHPSLN*ARADVH
Trigger: GTGGACATCAGCCCTAGCCCAGTTCAGGCTGGGATG...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR TCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTCGTCCAGTTTGGGATaGACAGCTGTTGCCACTAAG +
Preference number: 2 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPSSSLG*TAVATK
Trigger: CTTAGTGGCAACAGCTGTTCATCCCAAACTGGACGA...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR TCA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACACAGTGGGGAAGAGGCTaGGCGGCTGGCTCTCGTTGG +
Preference number: 2 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTQWGRG*AAGSRW
Trigger: CCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTG...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
3UTR-3UTR GCA 90 bp CAATTGCAGCGAGATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAGTGGGAACAGAGGCGTaGGGGACAGGGGTGGTGGTG +
Preference number: 2 (lower is better)
Translates to: QLQRDLLDKTCTFDTASVVGTEA*GTGVVV
Trigger: CACCACCACCCCTGTCCCGCACGCCTCTGTTCCCAC...TACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGGCCATCGAAGTTTCTTaGGATGCTGCCGCTGGTGGA +
Preference number: 2 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQAIEVS*DAAAGG
Trigger: TCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGC...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
3UTR-3UTR GCA 90 bp GATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAAAGTTTCTTGGGATGCTaGCGCTGGTGGAGCCGGAGC +
Preference number: 2 (lower is better)
Translates to: DEQLLPLSLGKVGLRRLKSFLGC*RWWSRS
Trigger: GCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACT...TTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
3UTR-3UTR CCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCACCAAAATGCCTGGCTaGATCTTTCAACTCTCCCCT +
Preference number: 2 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPTKMPG*IFQLSP
Trigger: AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGT...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCGTCCACCAAAATGCCTaGCTGGATCTTTCAACTCTC +
Preference number: 2 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPVHQNA*LDLSTL
Trigger: GAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGAC...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp TGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTTCATGGAACAGTACAGGCATCCCAGCCTGAACTaGGCTAGGGCTGATGTCCAC +
Preference number: 2 (lower is better)
Translates to: CTFDTASVTALPFMEQYRHPSLN*ARADVH
Trigger: GTGGACATCAGCCCTAGCCCAGTTCAGGCTGGGATG...CCTGTACTGTTCCATGAAGGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp GATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCAAGAGGCTGAGCGGCTaGCTCTCGTTGGTAGGGAGC +
Preference number: 2 (lower is better)
Translates to: DLLDKTCTFDTASVTALPKRLSG*LSLVGS
Trigger: GCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTT...GGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
3UTR-3UTR TCA 90 bp TGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTTCATGGAACAGTACAGGCAAGACGTGCACTTTTaGCACGGCCTCGGTAACTGC +
Preference number: 2 (lower is better)
Translates to: CTFDTASVTALPFMEQYRQDVHF*HGLGNC
Trigger: GCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTG...CCTGTACTGTTCCATGAAGGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR GCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGAAGGGACTGAGTTTCTaGAGTCTCTTTGGGCCACAG +
Preference number: 2 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQKGLSF*SLFGPQ
Trigger: CTGTGGCCCAAAGAGACTGCAGAAACTCAGTCCCTT...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCTCTTCTCGTCCAGTTTaGGATGAACAGCTGTTGCCA +
Preference number: 2 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPSSRPV*DEQLLP
Trigger: TGGCAACAGCTGTTCATCCCAAACTGGACGAGAAGA...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR TCA 90 bp GATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCCAAGACGTGCACTTTTaGCACGGCCTCGGTAACTGC +
Preference number: 2 (lower is better)
Translates to: DLLDKTCTFDTASVTALPQDVHF*HGLGNC
Trigger: GCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTG...GGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGACCAAAATGCCTGGCTaGATCTTTCAACTCTCCCCT +
Preference number: 2 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQTKMPG*IFQLSP
Trigger: AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGT...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp TGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTTCATGGAACAGTACAGGCTGCACTTCCCTTCATaGAACAGTACAGGACCAGGG +
Preference number: 2 (lower is better)
Translates to: CTFDTASVTALPFMEQYRLHFPS*NSTGPG
Trigger: CCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGCAG...CCTGTACTGTTCCATGAAGGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR CAA 90 bp GGTGTTCTGAAGGTCTCTTCTCGTCCAGTTTGGGATGAACAGCTGTaGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAAAGG +
Preference number: 2 (lower is better)
Translates to: GVLKVSSRPVWDEQL*PLSLGKVGLRRLKR
Trigger: CCTTTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCAAACTGGACGAGAAGAGACCTTCAGAACACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGTCTTCTCGTCCAGTTTaGGATGAACAGCTGTTGCCA +
Preference number: 2 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKSSRPV*DEQLLP
Trigger: TGGCAACAGCTGTTCATCCCAAACTGGACGAGAAGA...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCCATCCCAGCCTGAACTaGGCTAGGGCTGATGTCCAC +
Preference number: 2 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSHPSLN*ARADVH
Trigger: GTGGACATCAGCCCTAGCCCAGTTCAGGCTGGGATG...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp GATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCCTGCACTTCCCTTCATaGAACAGTACAGGACCAGGG +
Preference number: 2 (lower is better)
Translates to: DLLDKTCTFDTASVTALPLHFPS*NSTGPG
Trigger: CCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGCAG...GGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR TCA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGTCGTCCAGTTTGGGATaGACAGCTGTTGCCACTAAG +
Preference number: 2 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKSSSLG*TAVATK
Trigger: CTTAGTGGCAACAGCTGTTCATCCCAAACTGGACGA...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCGCCATCGAAGTTTCTTaGGATGCTGCCGCTGGTGGA +
Preference number: 2 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSAIEVS*DAAAGG
Trigger: TCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGC...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
3UTR-3UTR TCA 90 bp AAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGAAAGAGAGAAGGGACTaGGTTTCTGCAGTCTCTTTG +
Preference number: 2 (lower is better)
Translates to: KMPGWIFQLSPTRGPKIWKERRD*VSAVSL
Trigger: CAAAGAGACTGCAGAAACTCAGTCCCTTCTCTCTTT...CCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR TCA 90 bp CAATTGCAGCGAGATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAAGACAAATCTCTCCATaGGCCAACAGGGAAGCAAGG +
Preference number: 2 (lower is better)
Translates to: QLQRDLLDKTCTFDTASVRQISP*ANREAR
Trigger: CCTTGCTTCCCTGTTGGCTCATGGAGAGATTTGTCT...TACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGTCTTCTCGTCCAGTTTaGGATGAACAGCTGTTGCCA +
Preference number: 2 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKSSRPV*DEQLLP
Trigger: TGGCAACAGCTGTTCATCCCAAACTGGACGAGAAGA...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CCA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGGTCCACCAAAATGCCTaGCTGGATCTTTCAACTCTC +
Preference number: 2 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKVHQNA*LDLSTL
Trigger: GAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGAC...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR TCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCTCGTCCAGTTTGGGATaGACAGCTGTTGCCACTAAG +
Preference number: 2 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSSSSLG*TAVATK
Trigger: CTTAGTGGCAACAGCTGTTCATCCCAAACTGGACGA...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR TCA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGTGTTCCAGTCCCCTGTaGGTAGTTAGAAAATACAAA +
Preference number: 2 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRCSSPL*VVRKYK
Trigger: TTTGTATTTTCTAACTACTCACAGGGGACTGGAACA...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR GCA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACATTATTGGACAAGACGTaGACTTTTGACACGGCCTCG +
Preference number: 2 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTLLDKT*TFDTAS
Trigger: CGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAA...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR TCA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAAAAGAGAGAAGGGACTaGGTTTCTGCAGTCTCTTTG +
Preference number: 2 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTKERRD*VSAVSL
Trigger: CAAAGAGACTGCAGAAACTCAGTCCCTTCTCTCTTT...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR TCA 90 bp CAATTGCAGCGAGATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAAAAGAGAGAAGGGACTaGGTTTCTGCAGTCTCTTTG +
Preference number: 2 (lower is better)
Translates to: QLQRDLLDKTCTFDTASVKERRD*VSAVSL
Trigger: CAAAGAGACTGCAGAAACTCAGTCCCTTCTCTCTTT...TACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR TCA 90 bp ACTTTAGTAACATCAGGCACAGTAACCAACAGCCAGTGGCAGCATGTCTGCATAAAACGAGGGAGCTGCTaGAGCAGAACCTTTCAAAAG +
Preference number: 2 (lower is better)
Translates to: TLVTSGTVTNSQWQHVCIKRGSC*SRTFQK
Trigger: CTTTTGAAAGGTTCTGCTTCAGCAGCTCCCTCGTTT...TATGCAGACATGCTGCCACTGGCTGTTGGTTACTGTGCCTGATGTTACTAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
3UTR-3UTR GCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCTTATTGGACAAGACGTaGACTTTTGACACGGCCTCG +
Preference number: 2 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSLLDKT*TFDTAS
Trigger: CGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAA...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR TCA 90 bp GATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTGTTCCAGTCCCCTGTaGGTAGTTAGAAAATACAAA +
Preference number: 2 (lower is better)
Translates to: DLLDKTCTFDTASVTALPCSSPL*VVRKYK
Trigger: TTTGTATTTTCTAACTACTCACAGGGGACTGGAACA...GGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR TCA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACATGTTCCAGTCCCCTGTaGGTAGTTAGAAAATACAAA +
Preference number: 2 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTCSSPL*VVRKYK
Trigger: TTTGTATTTTCTAACTACTCACAGGGGACTGGAACA...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR TCA 90 bp CTACTAAGGAGACCATGCAACTCTCCAGAAAATAAGTATCAACGCATGAAGTCCGCTCCACAGATGGAATaGCTGCGAATTTTCAATCCA +
Preference number: 2 (lower is better)
Translates to: LLRRPCNSPENKYQRMKSAPQME*LRIFNP
Trigger: TGGATTGAAAATTCGCAGTCATTCCATCTGTGGAGC...GGACTTCATGCGTTGATACTTATTTTCTGGAGAGTTGCATGGTCTCCTTAGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
3UTR-3UTR CCA 90 bp CTACTAAGGAGACCATGCAACTCTCCAGAAAATAAGTATCAACGCATGAAGTCCGGGCAGAGTCTAAGGTaGAAAGCACAAACTCAAAGT +
Preference number: 2 (lower is better)
Translates to: LLRRPCNSPENKYQRMKSGQSLR*KAQTQS
Trigger: ACTTTGAGTTTGTGCTTTCCACCTTAGACTCTGCCC...GGACTTCATGCGTTGATACTTATTTTCTGGAGAGTTGCATGGTCTCCTTAGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
3UTR-3UTR TCA 90 bp ACTTTAGTAACATCAGGCACAGTAACCAACAGCCAGTGGCAGCATGTCTGCATATCAAAGTTAGCCATTTaGAGAGTAACCATCTTCCAA +
Preference number: 2 (lower is better)
Translates to: TLVTSGTVTNSQWQHVCISKLAI*RVTIFQ
Trigger: TTGGAAGATGGTTACTCTTCAAATGGCTAACTTTGA...TATGCAGACATGCTGCCACTGGCTGTTGGTTACTGTGCCTGATGTTACTAAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
3UTR-3UTR CAA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATATCCAGTGCGGGACGTaGTGTGCAAAGAGAGAAGGG +
Preference number: 3 (lower is better)
Translates to: AGVPGGNVHPSLNWARADIQCGT*CAKREG
Trigger: CCCTTCTCTCTTTGCACACAACGTCCCGCACTGGAT...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CAA 90 bp AAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGAGCGGCTGGCTCTCGTaGGTAGGGAGCGGAGATCGG +
Preference number: 3 (lower is better)
Translates to: KMPGWIFQLSPTRGPKIWSGWLS*VGSGDR
Trigger: CCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCT...CCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
3UTR-3UTR CAA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCTTAGGGAAGGTGGGGTaGAGGAGACTGAAAAGGGTG +
Preference number: 3 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSLGKVG*RRLKRV
Trigger: CACCCTTTTCAGTCTCCTCAACCCCACCTTCCCTAA...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR CCA 72 bp ACTGGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTaGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAG +
Preference number: 3 (lower is better)
Translates to: TGLGLMSTKMPG*IFQLSPTRGPK
Trigger: CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CAA 90 bp TGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGTTAGGGAAGGTGGGGTaGAGGAGACTGAAAAGGGTG +
Preference number: 3 (lower is better)
Translates to: WDEQLLPLSLGKVGLRRLLGKVG*RRLKRV
Trigger: CACCCTTTTCAGTCTCCTCAACCCCACCTTCCCTAA...CAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CAA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGTTAGGGAAGGTGGGGTaGAGGAGACTGAAAAGGGTG +
Preference number: 3 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKLGKVG*RRLKRV
Trigger: CACCCTTTTCAGTCTCCTCAACCCCACCTTCCCTAA...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CAA 90 bp CAATTGCAGCGAGATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAATCCAGTGCGGGACGTaGTGTGCAAAGAGAGAAGGG +
Preference number: 3 (lower is better)
Translates to: QLQRDLLDKTCTFDTASVIQCGT*CAKREG
Trigger: CCCTTCTCTCTTTGCACACAACGTCCCGCACTGGAT...TACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR-3UTR CAA 90 bp CAATTGCAGCGAGATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTATTAGGGAAGGTGGGGTaGAGGAGACTGAAAAGGGTG +
Preference number: 3 (lower is better)
Translates to: QLQRDLLDKTCTFDTASVLGKVG*RRLKRV
Trigger: CACCCTTTTCAGTCTCCTCAACCCCACCTTCCCTAA...TACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR GCA 72 bp GAACACCAATTGCAGCGAGATTTATTGGACAAGACGTaGACTTTTGACACGGCCTCGGTAACTGCACTTCCC +
Preference number: 3 (lower is better)
Translates to: EHQLQRDLLDKT*TFDTASVTALP
Trigger: GGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAATTGGTGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR CCA 72 bp ACTTTAGTAACATCAGGCACAGTAACCAACAGCCAGTaGCAGCATGTCTGCATACAGAAACGAGGGAGCTGC +
Preference number: 3 (lower is better)
Translates to: TLVTSGTVTNSQ*QHVCIQKRGSC
Trigger: GCAGCTCCCTCGTTTCTGTATGCAGACATGCTGCCACTGGCTGTTGGTTACTGTGCCTGATGTTACTAAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
3UTR-3UTR CAA 90 bp CAATTGCAGCGAGATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTATGGGATGAACAGCTGTaGCCACTAAGCTTAGGGAAG +
Preference number: 3 (lower is better)
Translates to: QLQRDLLDKTCTFDTASVWDEQL*PLSLGK
Trigger: CTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA...TACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR TCA 72 bp ATTGCAGCGAGATTTATTGGACAAGACGTGCACTTTTaGCACGGCCTCGGTAACTGCACTTCCCTTCATGGA +
Preference number: 3 (lower is better)
Translates to: IAARFIGQDVHF*HGLGNCTSLHG
Trigger: TCCATGAAGGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
3UTR TCA 72 bp TCTAAGGTGGAAAGCACAAACTCAAAGTTAGCCATTTaGAGAGTAACCATCTTCCAACATGAACAGAACTTA +
Preference number: 3 (lower is better)
Translates to: SKVESTNSKLAI*RVTIFQHEQNL
Trigger: TAAGTTCTGTTCATGTTGGAAGATGGTTACTCTTCAAATGGCTAACTTTGAGTTTGTGCTTTCCACCTTAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR GCA 90 bp CCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGCTCGGCCATGGCATCTaGAAGCCGTTCCCGGAGGCC +
Preference number: 4 (lower is better)
Translates to: PVGKRLSGWLSLVGSGDRLGHGI*KPFPEA
Trigger: GGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAG...CCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR TCA 90 bp CCCCTCCCAGTCAGTCCCTCTAGGGGTGAGCGGGCCAGCCAGTCAGAAGCAGGTGCGAGGAGCAGAGGGTaGTTCGCATTGAATGGCGGC +
Preference number: 4 (lower is better)
Translates to: PLPVSPSRGERASQSEAGARSRG*FALNGG
Trigger: GCCGCCATTCAATGCGAATCACCCTCTGCTCCTCGC...ACCTGCTTCTGACTGGCTGGCCCGCTCACCCCTAGAGGGACTGACTGGGAGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCAGAGACAGCACGGGATaGCCCTGGCATGCTGACTGG +
Preference number: 4 (lower is better)
Translates to: GEEAERLALVGRERRSVARDSTG*PWHADW
Trigger: CCAGTCAGCATGCCAGGGTCATCCCGTGCTGTCTCT...GGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR GCA 90 bp CCCCTCCCAGTCAGTCCCTCTAGGGGTGAGCGGGCCAGCCAGTCAGAAGCAGGTCGAAGTTTCTTGGGATaGTGCCGCTGGTGGAGCCGG +
Preference number: 4 (lower is better)
Translates to: PLPVSPSRGERASQSEAGRSFLG*CRWWSR
Trigger: CCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCG...ACCTGCTTCTGACTGGCTGGCCCGCTCACCCCTAGAGGGACTGACTGGGAGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GAAGCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGAATGACCCTGGCATGCTaGCTGGGTCAGAGCGGACAG +
Preference number: 4 (lower is better)
Translates to: EASGEEAERLALVGRERRMTLAC*LGQSGQ
Trigger: CTGTCCGCTCTGACCCAGTCAGCATGCCAGGGTCAT...TCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGCTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATCCGGAGGCCCTCCTCTaGGTGCTCCATGGAGGACAT +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADPEALL*VLHGGH
Trigger: ATGTCCTCCATGGAGCACTCAGAGGAGGGCCTCCGG...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp CCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGCGGGGGTGCTGTTTTTaGCTGCTACGTCAAGGGCTG +
Preference number: 4 (lower is better)
Translates to: PVGKRLSGWLSLVGSGDRRGCCF*LLRQGL
Trigger: CAGCCCTTGACGTAGCAGTCAAAAACAGCACCCCCG...CCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCTCACTACCATCAAGCTaGGGAGGGGAGAAAGCCGGG +
Preference number: 4 (lower is better)
Translates to: GEEAERLALVGRERRSVASLPSS*GGEKAG
Trigger: CCCGGCTTTCTCCCCTCCCCAGCTTGATGGTAGTGA...GGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGTCACTACCATCAAGCTaGGGAGGGGAGAAAGCCGGG +
Preference number: 4 (lower is better)
Translates to: ASGEEAERLALVGRERRSSLPSS*GGEKAG
Trigger: CCCGGCTTTCTCCCCTCCCCAGCTTGATGGTAGTGA...CGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp CCCCTCCCAGTCAGTCCCTCTAGGGGTGAGCGGGCCAGCCAGTCAGAAGCAGGTTTGGTGACTCGGCCATaGCATCTGCAAGCCGTTCCC +
Preference number: 4 (lower is better)
Translates to: PLPVSPSRGERASQSEAGLVTRP*HLQAVP
Trigger: GGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAA...ACCTGCTTCTGACTGGCTGGCCCGCTCACCCCTAGAGGGACTGACTGGGAGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGTTGGTGACTCGGCCATaGCATCTGCAAGCCGTTCCC +
Preference number: 4 (lower is better)
Translates to: ASGEEAERLALVGRERRSLVTRP*HLQAVP
Trigger: GGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAA...CGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR CCA 90 bp GGGAAGCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAACAGAGAAGAGCTCCTaGGCTTCCCCGCTGATAGGG +
Preference number: 4 (lower is better)
Translates to: GKPVGKRLSGWLSLVGSGTEKSS*ASPLIG
Trigger: CCCTATCAGCGGGGAAGCCCAGGAGCTCTTCTCTGT...TCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGCTTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATAGAGACAGCACGGGATaGCCCTGGCATGCTGACTGG +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADRDSTG*PWHADW
Trigger: CCAGTCAGCATGCCAGGGTCATCCCGTGCTGTCTCT...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp CGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCGGACCGGAGGCCCTCCTCTaGGTGCTCCATGGAGGACAT +
Preference number: 4 (lower is better)
Translates to: RRSVAIEVSWDAAAGGAGPEALL*VLHGGH
Trigger: ATGTCCTCCATGGAGCACTCAGAGGAGGGCCTCCGG...TCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR TCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATAACGTCTCGGCTTGGTaGCTCGGCCATGGCATCTGC +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADNVSAW*LGHGIC
Trigger: GCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTT...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp CCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGATGCTTCCCTCTCGCTaGAGTTCTTCCTCCGTCTCG +
Preference number: 4 (lower is better)
Translates to: PVGKRLSGWLSLVGSGDRMLPSR*SSSSVS
Trigger: CGAGACGGAGGAAGAACTTCAGCGAGAGGGAAGCAT...CCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR GCA 90 bp GAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCCTGGTCAGCTTCCCATaGAGCGGGGAGCCAGAAGGG +
Preference number: 4 (lower is better)
Translates to: ERRSVAIEVSWDAAAGGALVSFP*SGEPEG
Trigger: CCCTTCTGGCTCCCCGCTGCATGGGAAGCTGACCAG...GGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR GCA 90 bp GAAGCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCCATGGAGGACATATaGCGCAGCCCGAAGCCCTCA +
Preference number: 4 (lower is better)
Translates to: EASGEEAERLALVGRERRSMEDI*RSPKPS
Trigger: TGAGGGCTTCGGGCTGCGGCATATGTCCTCCATGGA...TCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR GCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCCTCGGCCATGGCATCTaGAAGCCGTTCCCGGAGGCC +
Preference number: 4 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPLGHGI*KPFPEA
Trigger: GGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAG...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATGGATGCTGCCGCTGGTaGAGCCGGAGCTGTTACTCA +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADGCCRW*SRSCYS
Trigger: TGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATCC...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGTCATGGGCAGGGAAGTaGGCCACAATGCCATCACTG +
Preference number: 4 (lower is better)
Translates to: ASGEEAERLALVGRERRSSWAGK*ATMPSL
Trigger: CAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGA...CGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp GGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCGCGAGGAGCAGAGGGTaGTTCGCATTGAATGGCGGC +
Preference number: 4 (lower is better)
Translates to: GAEIGSHRSFLGCCRWWSARSRG*FALNGG
Trigger: GCCGCCATTCAATGCGAATCACCCTCTGCTCCTCGC...GCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp GAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCAACGTCTCGGCTTGGTaGCTCGGCCATGGCATCTGC +
Preference number: 4 (lower is better)
Translates to: ERRSVAIEVSWDAAAGGANVSAW*LGHGIC
Trigger: GCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTT...GGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR TCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATCGGGGGTGCTGTTTTTaGCTGCTACGTCAAGGGCTG +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADRGCCF*LLRQGL
Trigger: CAGCCCTTGACGTAGCAGTCAAAAACAGCACCCCCG...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR TCA 90 bp GGGAAGCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGATTCCCCAGTCCGGAGTaGATACAGATCCACACAGCA +
Preference number: 4 (lower is better)
Translates to: GKPVGKRLSGWLSLVGSGFPSPE*IQIHTA
Trigger: TGCTGTGTGGATCTGTATTCACTCCGGACTGGGGAA...TCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGCTTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp GGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCAGTGTGCCTGTCAGTTaGGTCACCACTTTCCCAACC +
Preference number: 4 (lower is better)
Translates to: GEEAERLALVGRERRSVASVPVS*VTTFPT
Trigger: GGTTGGGAAAGTGGTGACTCAACTGACAGGCACACT...GGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR GCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCGGGAGCCAGAAGGGCTaGTGGACAGGCCTGGAACAG +
Preference number: 4 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPGSQKG*WTGLEQ
Trigger: CTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCC...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCCTGGTAATACTGCACTaGTTCTGCAGCGAGGAGCAG +
Preference number: 4 (lower is better)
Translates to: GEEAERLALVGRERRSVALVILH*FCSEEQ
Trigger: CTGCTCCTCGCTGCAGAAGCAGTGCAGTATTACCAG...GGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR GCA 90 bp GAAGCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGAAGGCCCTCCTCTGAGTaGTCCATGGAGGACATATGC +
Preference number: 4 (lower is better)
Translates to: EASGEEAERLALVGRERRRPSSE*SMEDIC
Trigger: GCATATGTCCTCCATGGAGCACTCAGAGGAGGGCCT...TCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR GCA 90 bp GCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGAGGCAAGATTCTAGCTaGTCGGACTGGACCATGTCG +
Preference number: 4 (lower is better)
Translates to: ASGEEAERLALVGRERRSRQDSS*SDWTMS
Trigger: CGACATGGTCCAGTCCGAGCAGCTAGAATCTTGCCT...CGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR GCA 90 bp CCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGCTACAGCGGCCGCCTTaGTTAGATGTCAGCTCTTGT +
Preference number: 4 (lower is better)
Translates to: PVGKRLSGWLSLVGSGDRLQRPP*LDVSSC
Trigger: ACAAGAGCTGACATCTAAGCAAGGCGGCCGCTGTAG...CCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCATCGAAGTTAGCCAGAAGGGCTGCTaGACAGGCCTGGAACAGGAC +
Preference number: 4 (lower is better)
Translates to: AERLALVGRERRSVAIEVSQKGC*TGLEQD
Trigger: GTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCT...AACTTCGATGGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCATCCACAGGCGCCTGTaGGGTCCGGTGTGTGTCACA +
Preference number: 4 (lower is better)
Translates to: GAEIGSHRSFLGCCRWWSIHRRL*GPVCVT
Trigger: TGTGACACACACCGGACCCCACAGGCGCCTGTGGAT...GCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCTCAGAGCGGACAGGCTaGATCCTGAGGCTGTTAAGA +
Preference number: 4 (lower is better)
Translates to: GEEAERLALVGRERRSVASERTG*ILRLLR
Trigger: TCTTAACAGCCTCAGGATCCAGCCTGTCCGCTCTGA...GGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCCCCTGGCATGCTGACTaGGTCAGAGCGGACAGGCTG +
Preference number: 4 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSPWHAD*VRADRL
Trigger: CAGCCTGTCCGCTCTGACCCAGTCAGCATGCCAGGG...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCTTGGGCACCCAACTGTaGAGCAGGCAAGATTCTAGC +
Preference number: 4 (lower is better)
Translates to: GEEAERLALVGRERRSVALGTQL*SRQDSS
Trigger: GCTAGAATCTTGCCTGCTCCACAGTTGGGTGCCCAA...GGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCGCGAGGAGCAGAGGGTaGTTCGCATTGAATGGCGGC +
Preference number: 4 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPARSRG*FALNGG
Trigger: GCCGCCATTCAATGCGAATCACCCTCTGCTCCTCGC...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GGTAGGGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTATGACCCTGGCATGCTaGCTGGGTCAGAGCGGACAG +
Preference number: 4 (lower is better)
Translates to: GRERRSVAIEVSWDAAAGMTLAC*LGQSGQ
Trigger: CTGTCCGCTCTGACCCAGTCAGCATGCCAGGGTCAT...ACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCCCTACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCATGACCCTGGCATGCTaGCTGGGTCAGAGCGGACAG +
Preference number: 4 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSMTLAC*LGQSGQ
Trigger: CTGTCCGCTCTGACCCAGTCAGCATGCCAGGGTCAT...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCAACGTCTCGGCTTGGTaGCTCGGCCATGGCATCTGC +
Preference number: 4 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSNVSAW*LGHGIC
Trigger: GCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTT...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATGGCCACCATAAGGATTaGTGGGGAAAACGTGGGACG +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADGHHKD*WGKRGT
Trigger: CGTCCCACGTTTTCCCCATCAATCCTTATGGTGGCC...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp CCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGATTGACTACTCGTGGTaGCATGTGTGTGCGGACACA +
Preference number: 4 (lower is better)
Translates to: PVGKRLSGWLSLVGSGDRIDYSW*HVCADT
Trigger: TGTGTCCGCACACACATGTCACCACGAGTAGTCAAT...CCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR GCA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCGGGAGCCAGAAGGGCTaGTGGACAGGCCTGGAACAG +
Preference number: 4 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPGSQKG*WTGLEQ
Trigger: CTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCC...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGGTCAGCTTCCCATaGAGCGGGGAGCCAGAAGGG +
Preference number: 4 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPLVSFP*SGEPEG
Trigger: CCCTTCTGGCTCCCCGCTGCATGGGAAGCTGACCAG...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCGTGGTGACATGTGTGTaGGGACACAAGGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: GAEIGSHRSFLGCCRWWSVVTCV*GHKAGH
Trigger: GTGGCCAGCCTTGTGTCCGCACACACATGTCACCAC...GCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCTTTGAAATGGAATTGTaGGCCCATCCACAGGCGCCT +
Preference number: 4 (lower is better)
Translates to: GEEAERLALVGRERRSVAFEMEL*AHPQAP
Trigger: AGGCGCCTGTGGATGGGCCCACAATTCCATTTCAAA...GGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp CCCCTCCCAGTCAGTCCCTCTAGGGGTGAGCGGGCCAGCCAGTCAGAAGCAGGTTTTGAAATGGAATTGTaGGCCCATCCACAGGCGCCT +
Preference number: 4 (lower is better)
Translates to: PLPVSPSRGERASQSEAGFEMEL*AHPQAP
Trigger: AGGCGCCTGTGGATGGGCCCACAATTCCATTTCAAA...ACCTGCTTCTGACTGGCTGGCCCGCTCACCCCTAGAGGGACTGACTGGGAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATAACACTTCACAGCCATaGGTCTCTCGGGGGTGCTGT +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADNTSQP*VSRGCC
Trigger: ACAGCACCCCCGAGAGACCCATGGCTGTGAAGTGTT...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR CCA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCGGATGCTGCCGCTGGTaGAGCCGGAGCTGTTACTCA +
Preference number: 4 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSGCCRW*SRSCYS
Trigger: TGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATCC...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTTGGGATGCTGCCGCTaGTGGAGCCGGAGCTGTTAC +
Preference number: 4 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPLGCCR*WSRSCY
Trigger: GTAACAGCTCCGGCTCCACCAGCGGCAGCATCCCAA...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CCCCTCCCAGTCAGTCCCTCTAGGGGTGAGCGGGCCAGCCAGTCAGAAGCAGGTAGCCATACAGCATACTaGCTTCTCATGGGCAGGGAA +
Preference number: 4 (lower is better)
Translates to: PLPVSPSRGERASQSEAGSHTAY*LLMGRE
Trigger: TTCCCTGCCCATGAGAAGCCAGTATGCTGTATGGCT...ACCTGCTTCTGACTGGCTGGCCCGCTCACCCCTAGAGGGACTGACTGGGAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATTTCCCCAGTCCGGAGTaGATACAGATCCACACAGCA +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADFPSPE*IQIHTA
Trigger: TGCTGTGTGGATCTGTATTCACTCCGGACTGGGGAA...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp GGTAGGGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTATCTTCTGTCACCCCTaGGGGCAGTGTGCCTGTCAG +
Preference number: 4 (lower is better)
Translates to: GRERRSVAIEVSWDAAAGIFCHP*GQCACQ
Trigger: CTGACAGGCACACTGCCCTCAGGGGTGACAGAAGAT...ACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCCCTACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp GGTAGGGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTTACCCCGGAGGGTACTaGCCACCACCCAACGACAAT +
Preference number: 4 (lower is better)
Translates to: GRERRSVAIEVSWDAAAGYPGGY*PPPNDN
Trigger: ATTGTCGTTGGGTGGTGGTCAGTACCCTCCGGGGTA...ACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCCCTACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATATGCTTCCCTCTCGCTaGAGTTCTGTTCCAGATCCC +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADMLPSR*SSVPDP
Trigger: GGGATCTGGAACAGAACTTCAGCGAGAGGGAAGCAT...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCATGCTTCCCTCTCGCTaGAGTTCTTCCTCCGTCTCG +
Preference number: 4 (lower is better)
Translates to: ERRSVAIEVSWDAAAGGAMLPSR*SSSSVS
Trigger: CGAGACGGAGGAAGAACTTCAGCGAGAGGGAAGCAT...GGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR GCA 90 bp GGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTGGGAGCCAGAAGGGCTaGTGGACAGGCCTGGAACAG +
Preference number: 4 (lower is better)
Translates to: GLGLMSTKMPGWIFQLSPGSQKG*WTGLEQ
Trigger: CTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCC...AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp TGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGCTCGGCCATGGCATCTaGAAGCCGTTCCCGGAGGCC +
Preference number: 4 (lower is better)
Translates to: WDEQLLPLSLGKVGLRRLLGHGI*KPFPEA
Trigger: GGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAG...CAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCTCGGCCATGGCATCTaGAAGCCGTTCCCGGAGGCC +
Preference number: 4 (lower is better)
Translates to: ARADVHQNAWLDLSTLPYLGHGI*KPFPEA
Trigger: GGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAG...GTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCGAAGTTTCTTGGGATaGTGCCGCTGGTGGAGCCGG +
Preference number: 4 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPRSFLG*CRWWSR
Trigger: CCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCG...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCGTGGTGACATGTGTGTaGGGACACAAGGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSVVTCV*GHKAGH
Trigger: GTGGCCAGCCTTGTGTCCGCACACACATGTCACCAC...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGGGTTCCCAGTGTCATTaGCTGTTTGATTTGCGCAAG +
Preference number: 4 (lower is better)
Translates to: PVGKRLSGWLSLVGSGDRGSQCH*LFDLRK
Trigger: CTTGCGCAAATCAAACAGCCAATGACACTGGGAACC...CCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTCCCTGGCATGCTGACTaGGTCAGAGCGGACAGGCTG +
Preference number: 4 (lower is better)
Translates to: GLGLMSTKMPGWIFQLSPPWHAD*VRADRL
Trigger: CAGCCTGTCCGCTCTGACCCAGTCAGCATGCCAGGG...AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTTGGTGACTCGGCCATaGCATCTGCAAGCCGTTCCC +
Preference number: 4 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPLVTRP*HLQAVP
Trigger: GGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAA...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATGGCTCCCAAGAGCAATaGGATTCATGTTTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADGSQEQ*DSCLAQ
Trigger: CTGGGCCAAACATGAATCCCATTGCTCTTGGGAGCC...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCATCACGCTTTGTTACTGTTaGGCTGTTCACGCACGCTGG +
Preference number: 4 (lower is better)
Translates to: EEAERLALVGRERRSVAITLCYC*AVHARW
Trigger: CCAGCGTGCGTGAACAGCCCAACAGTAACAAAGCGT...GATGGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR TCA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCGGAGGCCCTCCTCTaGGTGCTCCATGGAGGACAT +
Preference number: 4 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRPEALL*VLHGGH
Trigger: ATGTCCTCCATGGAGCACTCAGAGGAGGGCCTCCGG...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp TGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGCCGGAGGCCCTCCTCTaGGTGCTCCATGGAGGACAT +
Preference number: 4 (lower is better)
Translates to: WDEQLLPLSLGKVGLRRLPEALL*VLHGGH
Trigger: ATGTCCTCCATGGAGCACTCAGAGGAGGGCCTCCGG...CAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp TGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTTCATGGAACAGTACAGGCAGTGGGGAAGAGGCTaGGCGGCTGGCTCTCGTTGG +
Preference number: 4 (lower is better)
Translates to: CTFDTASVTALPFMEQYRQWGRG*AAGSRW
Trigger: CCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTG...CCTGTACTGTTCCATGAAGGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCGGCCACCATAAGGATTaGTGGGGAAAACGTGGGACG +
Preference number: 4 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPGHHKD*WGKRGT
Trigger: CGTCCCACGTTTTCCCCATCAATCCTTATGGTGGCC...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATAACGGCTCATGCGATTaGCTACTCGTGGTGACATGT +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADNGSCD*LLVVTC
Trigger: ACATGTCACCACGAGTAGTCAATCGCATGAGCCGTT...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACGGGAGCCAGAAGGGCTaGTGGACAGGCCTGGAACAG +
Preference number: 4 (lower is better)
Translates to: ARADVHQNAWLDLSTLPYGSQKG*WTGLEQ
Trigger: CTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCC...GTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCTGGTCAGCTTCCCATaGAGCGGGGAGCCAGAAGGG +
Preference number: 4 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRLVSFP*SGEPEG
Trigger: CCCTTCTGGCTCCCCGCTGCATGGGAAGCTGACCAG...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp AGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCGGAGCTATACTGCACTGCTTCTaGAGCGAGGAGCAGAGGGTG +
Preference number: 4 (lower is better)
Translates to: RSVAIEVSWDAAAGGAGAILHCF*SEEQRV
Trigger: CACCCTCTGCTCCTCGCTGCAGAAGCAGTGCAGTAT...AGCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR GCA 90 bp AGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCGGAGCTAGGCCCTCCTCTGAGTaGTCCATGGAGGACATATGC +
Preference number: 4 (lower is better)
Translates to: RSVAIEVSWDAAAGGAGARPSSE*SMEDIC
Trigger: GCATATGTCCTCCATGGAGCACTCAGAGGAGGGCCT...AGCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR GCA 90 bp GGTAGGGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTAGGCCCTCCTCTGAGTaGTCCATGGAGGACATATGC +
Preference number: 4 (lower is better)
Translates to: GRERRSVAIEVSWDAAAGRPSSE*SMEDIC
Trigger: GCATATGTCCTCCATGGAGCACTCAGAGGAGGGCCT...ACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCCCTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR GCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATGGTGCTGTTTTTGACTaGTACGTCAAGGGCTGTGTC +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADGAVFD*YVKGCV
Trigger: GACACAGCCCTTGACGTAGCAGTCAAAAACAGCACC...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR GCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGAGTTTCTTGGGATGCTaGCGCTGGTGGAGCCGGAGC +
Preference number: 4 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQSFLGC*RWWSRS
Trigger: GCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACT...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTAGTTTCTTGGGATGCTaGCGCTGGTGGAGCCGGAGC +
Preference number: 4 (lower is better)
Translates to: GLGLMSTKMPGWIFQLSPSFLGC*RWWSRS
Trigger: GCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACT...AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp AGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCGGAGCTGGAAGTGGGCCACAATaGCATCACTGTCCGAGTCCT +
Preference number: 4 (lower is better)
Translates to: RSVAIEVSWDAAAGGAGAGSGPQ*HHCPSP
Trigger: AGGACTCGGACAGTGATGGCATTGTGGCCCACTTCC...AGCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCTGTAAGAGTCTTGGCTaGTCAGCTTCCCATGCAGCG +
Preference number: 4 (lower is better)
Translates to: ERRSVAIEVSWDAAAGGACKSLG*SASHAA
Trigger: CGCTGCATGGGAAGCTGACCAGCCAAGACTCTTACA...GGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGATCCACAGGCGCCTGTaGGGTCCGGTGTGTGTCACA +
Preference number: 4 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQIHRRL*GPVCVT
Trigger: TGTGACACACACCGGACCCCACAGGCGCCTGTGGAT...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCTGGATGGTTTTGAAATaGAATTGTGGGCCCATCCAC +
Preference number: 4 (lower is better)
Translates to: GEEAERLALVGRERRSVAWMVLK*NCGPIH
Trigger: GTGGATGGGCCCACAATTCCATTTCAAAACCATCCA...GGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp CCCCTCCCAGTCAGTCCCTCTAGGGGTGAGCGGGCCAGCCAGTCAGAAGCAGGTTGGATGGTTTTGAAATaGAATTGTGGGCCCATCCAC +
Preference number: 4 (lower is better)
Translates to: PLPVSPSRGERASQSEAGWMVLK*NCGPIH
Trigger: GTGGATGGGCCCACAATTCCATTTCAAAACCATCCA...ACCTGCTTCTGACTGGCTGGCCCGCTCACCCCTAGAGGGACTGACTGGGAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTGGCATGCTGACTaGGTCAGAGCGGACAGGCTG +
Preference number: 4 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRPWHAD*VRADRL
Trigger: CAGCCTGTCCGCTCTGACCCAGTCAGCATGCCAGGG...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGCCCTGGCATGCTGACTaGGTCAGAGCGGACAGGCTG +
Preference number: 4 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKPWHAD*VRADRL
Trigger: CAGCCTGTCCGCTCTGACCCAGTCAGCATGCCAGGG...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCCAGCATCGGTCACTGTaGAAACTCCCCTCCGATCAG +
Preference number: 4 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSQHRSL*KLPSDQ
Trigger: CTGATCGGAGGGGAGTTTCCACAGTGACCGATGCTG...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCAACACTTCACAGCCATaGGTCTCTCGGGGGTGCTGT +
Preference number: 4 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSNTSQP*VSRGCC
Trigger: ACAGCACCCCCGAGAGACCCATGGCTGTGAAGTGTT...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR CCA 90 bp GGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTAAGAGGCTGAGCGGCTaGCTCTCGTTGGTAGGGAGC +
Preference number: 4 (lower is better)
Translates to: GLGLMSTKMPGWIFQLSPKRLSG*LSLVGS
Trigger: GCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTT...AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GGTAGGGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTCGCCAGTACAACGACTaGGTCTCCGAGGAGAATCTG +
Preference number: 4 (lower is better)
Translates to: GRERRSVAIEVSWDAAAGRQYND*VSEENL
Trigger: CAGATTCTCCTCGGAGACCCAGTCGTTGTACTGGCG...ACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCCCTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCATCGAAGCTGTTCACGCACGCTaGGCTGTTGGCATTGTTTTT +
Preference number: 4 (lower is better)
Translates to: EAERLALVGRERRSVAIEAVHAR*AVGIVF
Trigger: AAAAACAATGCCAACAGCCCAGCGTGCGTGAACAGC...TTCGATGGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR TCA 90 bp GGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCGTGTCATTGGCTGTTTaGTTTGCGCAAGAGGCGTCA +
Preference number: 4 (lower is better)
Translates to: GAEIGSHRSFLGCCRWWSVSLAV*FAQEAS
Trigger: TGACGCCTCTTGCGCAAATCAAACAGCCAATGACAC...GCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCGACCGTGGTCTGGCCTaGGGTTTGGATGGTTTTGAA +
Preference number: 4 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPDRGLA*GLDGFE
Trigger: TTCAAAACCATCCAAACCTCAGGCCAGACCACGGTC...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp AGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCGGAGCTGACCGTGGTCTGGCCTaGGGTTTGGATGGTTTTGAA +
Preference number: 4 (lower is better)
Translates to: RSVAIEVSWDAAAGGAGADRGLA*GLDGFE
Trigger: TTCAAAACCATCCAAACCTCAGGCCAGACCACGGTC...AGCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATGACCCTGGCATGCTaGCTGGGTCAGAGCGGACAG +
Preference number: 4 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKMTLAC*LGQSGQ
Trigger: CTGTCCGCTCTGACCCAGTCAGCATGCCAGGGTCAT...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGATGACCCTGGCATGCTaGCTGGGTCAGAGCGGACAG +
Preference number: 4 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRMTLAC*LGQSGQ
Trigger: CTGTCCGCTCTGACCCAGTCAGCATGCCAGGGTCAT...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp CGTCCAGTTTGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGAGACAGCACGGGATaGCCCTGGCATGCTGACTGG +
Preference number: 4 (lower is better)
Translates to: RPVWDEQLLPLSLGKVGLRDSTG*PWHADW
Trigger: CCAGTCAGCATGCCAGGGTCATCCCGTGCTGTCTCT...CAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCAAACTGGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp CGTCCAGTTTGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAACGTCTCGGCTTGGTaGCTCGGCCATGGCATCTGC +
Preference number: 4 (lower is better)
Translates to: RPVWDEQLLPLSLGKVGLNVSAW*LGHGIC
Trigger: GCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTT...CAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCAAACTGGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGCGGGGGTGCTGTTTTTaGCTGCTACGTCAAGGGCTG +
Preference number: 4 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQRGCCF*LLRQGL
Trigger: CAGCCCTTGACGTAGCAGTCAAAAACAGCACCCCCG...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR TCA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCAGTGTGCCTGTCAGTTaGGTCACCACTTTCCCAACC +
Preference number: 4 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSSVPVS*VTTFPT
Trigger: GGTTGGGAAAGTGGTGACTCAACTGACAGGCACACT...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp CCCCTCCCAGTCAGTCCCTCTAGGGGTGAGCGGGCCAGCCAGTCAGAAGCAGGTAGGATTTGGAAGACATaGAAGTCATGGCCAAGAGTA +
Preference number: 4 (lower is better)
Translates to: PLPVSPSRGERASQSEAGRIWKT*KSWPRV
Trigger: TACTCTTGGCCATGACTTTCATGTCTTCCAAATCCT...ACCTGCTTCTGACTGGCTGGCCCGCTCACCCCTAGAGGGACTGACTGGGAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGTACCCCGGAGGGTACTaGCCACCACCCAACGACAAT +
Preference number: 4 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQYPGGY*PPPNDN
Trigger: ATTGTCGTTGGGTGGTGGTCAGTACCCTCCGGGGTA...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCGGCCACCATAAGGATTaGTGGGGAAAACGTGGGACG +
Preference number: 4 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPGHHKD*WGKRGT
Trigger: CGTCCCACGTTTTCCCCATCAATCCTTATGGTGGCC...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGTCCATGGAGGACATATaGCGCAGCCCGAAGCCCTCA +
Preference number: 4 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQSMEDI*RSPKPS
Trigger: TGAGGGCTTCGGGCTGCGGCATATGTCCTCCATGGA...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGCTCGGCCATGGCATCTaGAAGCCGTTCCCGGAGGCC +
Preference number: 4 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKLGHGI*KPFPEA
Trigger: GGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAG...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATTACTCAGAGTCTCGATaGTTCCCTCTCGCTGAAGTT +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADYSESR*FPLAEV
Trigger: AACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTA...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCCTACAGCGGCCGCCTTaGTTAGATGTCAGCTCTTGT +
Preference number: 4 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSLQRPP*LDVSSC
Trigger: ACAAGAGCTGACATCTAAGCAAGGCGGCCGCTGTAG...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AGTAACCAACAGCCAGTGGCAGCATGTCTGCATACAGAAACGAGGGAGCTGCTGAGCCAGAAGGGCTGCTaGACAGGCCTGGAACAGGAC +
Preference number: 4 (lower is better)
Translates to: SNQQPVAACLHTETRELLSQKGC*TGLEQD
Trigger: GTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCT...CAGCAGCTCCCTCGTTTCTGTATGCAGACATGCTGCCACTGGCTGTTGGTTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CCA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGAGCCAGAAGGGCTGCTaGACAGGCCTGGAACAGGAC +
Preference number: 4 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRSQKGC*TGLEQD
Trigger: GTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCT...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCTGTAAGAGTCTTGGCTaGTCAGCTTCCCATGCAGCG +
Preference number: 4 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSCKSLG*SASHAA
Trigger: CGCTGCATGGGAAGCTGACCAGCCAAGACTCTTACA...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CCCCTCCCAGTCAGTCCCTCTAGGGGTGAGCGGGCCAGCCAGTCAGAAGCAGGTCGTCATTATCTCCAGTaGTGTGTCGTCACTTATCTT +
Preference number: 4 (lower is better)
Translates to: PLPVSPSRGERASQSEAGRHYLQ*CVVTYL
Trigger: AAGATAAGTGACGACACACCACTGGAGATAATGACG...ACCTGCTTCTGACTGGCTGGCCCGCTCACCCCTAGAGGGACTGACTGGGAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCCACAGGCGCCTGTaGGGTCCGGTGTGTGTCACA +
Preference number: 4 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKIHRRL*GPVCVT
Trigger: TGTGACACACACCGGACCCCACAGGCGCCTGTGGAT...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCTCAGAGCGGACAGGCTaGATCCTGAGGCTGTTAAGA +
Preference number: 4 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSSERTG*ILRLLR
Trigger: TCTTAACAGCCTCAGGATCCAGCCTGTCCGCTCTGA...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTCAGAGCGGACAGGCTaGATCCTGAGGCTGTTAAGA +
Preference number: 4 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPSERTG*ILRLLR
Trigger: TCTTAACAGCCTCAGGATCCAGCCTGTCCGCTCTGA...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CGTCCAGTTTGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAAGAGGCTGAGCGGCTaGCTCTCGTTGGTAGGGAGC +
Preference number: 4 (lower is better)
Translates to: RPVWDEQLLPLSLGKVGLKRLSG*LSLVGS
Trigger: GCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTT...CAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCAAACTGGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCATCGAAGTTAGCCATACAGCATACTaGCTTCTCATGGGCAGGGAA +
Preference number: 4 (lower is better)
Translates to: AERLALVGRERRSVAIEVSHTAY*LLMGRE
Trigger: TTCCCTGCCCATGAGAAGCCAGTATGCTGTATGGCT...AACTTCGATGGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCAGCCATACAGCATACTaGCTTCTCATGGGCAGGGAA +
Preference number: 4 (lower is better)
Translates to: GAEIGSHRSFLGCCRWWSSHTAY*LLMGRE
Trigger: TTCCCTGCCCATGAGAAGCCAGTATGCTGTATGGCT...GCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCGCTGTTCACGCACGCTaGGCTGTTGGCATTGTTTTT +
Preference number: 4 (lower is better)
Translates to: ERRSVAIEVSWDAAAGGAAVHAR*AVGIVF
Trigger: AAAAACAATGCCAACAGCCCAGCGTGCGTGAACAGC...GGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR TCA 90 bp TGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTTCATGGAACAGTACAGGAGAGACAGCACGGGATaGCCCTGGCATGCTGACTGG +
Preference number: 4 (lower is better)
Translates to: CTFDTASVTALPFMEQYRRDSTG*PWHADW
Trigger: CCAGTCAGCATGCCAGGGTCATCCCGTGCTGTCTCT...CCTGTACTGTTCCATGAAGGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGCCGGAGGCCCTCCTCTaGGTGCTCCATGGAGGACAT +
Preference number: 4 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKPEALL*VLHGGH
Trigger: ATGTCCTCCATGGAGCACTCAGAGGAGGGCCTCCGG...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp TGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTTCATGGAACAGTACAGGAACGTCTCGGCTTGGTaGCTCGGCCATGGCATCTGC +
Preference number: 4 (lower is better)
Translates to: CTFDTASVTALPFMEQYRNVSAW*LGHGIC
Trigger: GCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTT...CCTGTACTGTTCCATGAAGGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp TGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGCGGGGGTGCTGTTTTTaGCTGCTACGTCAAGGGCTG +
Preference number: 4 (lower is better)
Translates to: WDEQLLPLSLGKVGLRRLRGCCF*LLRQGL
Trigger: CAGCCCTTGACGTAGCAGTCAAAAACAGCACCCCCG...CAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR TCA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGTGGGGAAGAGGCTaGGCGGCTGGCTCTCGTTGG +
Preference number: 4 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRQWGRG*AAGSRW
Trigger: CCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTG...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp CGTCCAGTTTGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGATCTTCTGTCACCCCTaGGGGCAGTGTGCCTGTCAG +
Preference number: 4 (lower is better)
Translates to: RPVWDEQLLPLSLGKVGLIFCHP*GQCACQ
Trigger: CTGACAGGCACACTGCCCTCAGGGGTGACAGAAGAT...CAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCAAACTGGACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp TGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGTACCCCGGAGGGTACTaGCCACCACCCAACGACAAT +
Preference number: 4 (lower is better)
Translates to: WDEQLLPLSLGKVGLRRLYPGGY*PPPNDN
Trigger: ATTGTCGTTGGGTGGTGGTCAGTACCCTCCGGGGTA...CAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCATTGACTACTCGTGGTaGCATGTGTGTGCGGACACA +
Preference number: 4 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPIDYSW*HVCADT
Trigger: TGTGTCCGCACACACATGTCACCACGAGTAGTCAAT...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCCTGGTCAGCTTCCCATaGAGCGGGGAGCCAGAAGGG +
Preference number: 4 (lower is better)
Translates to: DLLDKTCTFDTASVTALPLVSFP*SGEPEG
Trigger: CCCTTCTGGCTCCCCGCTGCATGGGAAGCTGACCAG...GGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTATACTGCACTGCTTCTaGAGCGAGGAGCAGAGGGTG +
Preference number: 4 (lower is better)
Translates to: GLGLMSTKMPGWIFQLSPILHCF*SEEQRV
Trigger: CACCCTCTGCTCCTCGCTGCAGAAGCAGTGCAGTAT...AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGTCCATGGAGGACATATaGCGCAGCCCGAAGCCCTCA +
Preference number: 4 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRSMEDI*RSPKPS
Trigger: TGAGGGCTTCGGGCTGCGGCATATGTCCTCCATGGA...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp CAATTGCAGCGAGATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTACTCGGCCATGGCATCTaGAAGCCGTTCCCGGAGGCC +
Preference number: 4 (lower is better)
Translates to: QLQRDLLDKTCTFDTASVLGHGI*KPFPEA
Trigger: GGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAG...TACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCTACTCAGAGTCTCGATaGTTCCCTCTCGCTGAAGTT +
Preference number: 4 (lower is better)
Translates to: GAEIGSHRSFLGCCRWWSYSESR*FPLAEV
Trigger: AACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTA...GCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR GCA 90 bp TGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTTCATGGAACAGTACAGGCGAAGTTTCTTGGGATaGTGCCGCTGGTGGAGCCGG +
Preference number: 4 (lower is better)
Translates to: CTFDTASVTALPFMEQYRRSFLG*CRWWSR
Trigger: CCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCG...CCTGTACTGTTCCATGAAGGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACTCACTACCATCAAGCTaGGGAGGGGAGAAAGCCGGG +
Preference number: 4 (lower is better)
Translates to: ARADVHQNAWLDLSTLPYSLPSS*GGEKAG
Trigger: CCCGGCTTTCTCCCCTCCCCAGCTTGATGGTAGTGA...GTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGTCACTACCATCAAGCTaGGGAGGGGAGAAAGCCGGG +
Preference number: 4 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKSLPSS*GGEKAG
Trigger: CCCGGCTTTCTCCCCTCCCCAGCTTGATGGTAGTGA...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GGGAAGCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGTCACAATTTCAACCTaGGAAAGCCATTCTTCATCT +
Preference number: 4 (lower is better)
Translates to: GKPVGKRLSGWLSLVGSGVTIST*ESHSSS
Trigger: AGATGAAGAATGGCTTTCCCAGGTTGAAATTGTGAC...TCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGCTTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCTTGGGCACCCAACTGTaGAGCAGGCAAGATTCTAGC +
Preference number: 4 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPLGTQL*SRQDSS
Trigger: GCTAGAATCTTGCCTGCTCCACAGTTGGGTGCCCAA...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGGACTGTGATGATGCCTaGAACCAAGGGGCTCCGTCT +
Preference number: 4 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQDCDDA*NQGAPS
Trigger: AGACGGAGCCCCTTGGTTCCAGGCATCATCACAGTC...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGCATACTGGCTTCTCATaGGCAGGGAAGTGGGCCACA +
Preference number: 4 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQHTGFS*AGKWAT
Trigger: TGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTATG...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCGTGTCATTGGCTGTTTaGTTTGCGCAAGAGGCGTCA +
Preference number: 4 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPVSLAV*FAQEAS
Trigger: TGACGCCTCTTGCGCAAATCAAACAGCCAATGACAC...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCATCAAACTCACCGCCCATTaGTTTGCTTGGAGAAATTTG +
Preference number: 4 (lower is better)
Translates to: EEAERLALVGRERRSVAIKLTAH*FAWRNL
Trigger: CAAATTTCTCCAAGCAAATCAATGGGCGGTGAGTTT...GATGGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp GAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCATCAGGATTTGGAAGACATaGAAGTCATGGCCAAGAGTA +
Preference number: 4 (lower is better)
Translates to: EEAERLALVGRERRSVAIRIWKT*KSWPRV
Trigger: TACTCTTGGCCATGACTTTCATGTCTTCCAAATCCT...GATGGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCAACGGCTCATGCGATTaGCTACTCGTGGTGACATGT +
Preference number: 4 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPNGSCD*LLVVTC
Trigger: ACATGTCACCACGAGTAGTCAATCGCATGAGCCGTT...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp TGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGATGCTTCCCTCTCGCTaGAGTTCTTCCTCCGTCTCG +
Preference number: 4 (lower is better)
Translates to: WDEQLLPLSLGKVGLRRLMLPSR*SSSSVS
Trigger: CGAGACGGAGGAAGAACTTCAGCGAGAGGGAAGCAT...CAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR GCA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACTGGTCAGCTTCCCATaGAGCGGGGAGCCAGAAGGG +
Preference number: 4 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRLVSFP*SGEPEG
Trigger: CCCTTCTGGCTCCCCGCTGCATGGGAAGCTGACCAG...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATACTGCACTGCTTCTaGAGCGAGGAGCAGAGGGTG +
Preference number: 4 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKILHCF*SEEQRV
Trigger: CACCCTCTGCTCCTCGCTGCAGAAGCAGTGCAGTAT...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp AAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGTCCATGGAGGACATATaGCGCAGCCCGAAGCCCTCA +
Preference number: 4 (lower is better)
Translates to: KMPGWIFQLSPTRGPKIWSMEDI*RSPKPS
Trigger: TGAGGGCTTCGGGCTGCGGCATATGTCCTCCATGGA...CCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGAGGCCCTCCTCTGAGTaGTCCATGGAGGACATATGC +
Preference number: 4 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKRPSSE*SMEDIC
Trigger: GCATATGTCCTCCATGGAGCACTCAGAGGAGGGCCT...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGAGGCCCTCCTCTGAGTaGTCCATGGAGGACATATGC +
Preference number: 4 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRRPSSE*SMEDIC
Trigger: GCATATGTCCTCCATGGAGCACTCAGAGGAGGGCCT...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCGGTGCTGTTTTTGACTaGTACGTCAAGGGCTGTGTC +
Preference number: 4 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPGAVFD*YVKGCV
Trigger: GACACAGCCCTTGACGTAGCAGTCAAAAACAGCACC...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR GCA 90 bp AGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCGGAGCTTACTCAGAGTCTCGATaGTTCCCTCTCGCTGAAGTT +
Preference number: 4 (lower is better)
Translates to: RSVAIEVSWDAAAGGAGAYSESR*FPLAEV
Trigger: AACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTA...AGCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR GCA 90 bp GGTAGGGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGCAGCAATTTTCTCCTaGAAGACTACGACGAGGATC +
Preference number: 4 (lower is better)
Translates to: GRERRSVAIEVSWDAAAGAAIFS*KTTTRI
Trigger: GATCCTCGTCGTAGTCTTGCAGGAGAAAATTGCTGC...ACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCCCTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR GCA 90 bp CGTCCAGTTTGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGGGAAGTGGGCCACAATaGCATCACTGTCCGAGTCCT +
Preference number: 4 (lower is better)
Translates to: RPVWDEQLLPLSLGKVGLGSGPQ*HHCPSP
Trigger: AGGACTCGGACAGTGATGGCATTGTGGCCCACTTCC...CAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCAAACTGGACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp AAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGGTGGTGACATGTGTGTaGGGACACAAGGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: KMPGWIFQLSPTRGPKIWVVTCV*GHKAGH
Trigger: GTGGCCAGCCTTGTGTCCGCACACACATGTCACCAC...CCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTCTACAGCGGCCGCCTTaGTTAGATGTCAGCTCTTGT +
Preference number: 4 (lower is better)
Translates to: GLGLMSTKMPGWIFQLSPLQRPP*LDVSSC
Trigger: ACAAGAGCTGACATCTAAGCAAGGCGGCCGCTGTAG...AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTTCATGGAACAGTACAGGTCACTACCATCAAGCTaGGGAGGGGAGAAAGCCGGG +
Preference number: 4 (lower is better)
Translates to: CTFDTASVTALPFMEQYRSLPSS*GGEKAG
Trigger: CCCGGCTTTCTCCCCTCCCCAGCTTGATGGTAGTGA...CCTGTACTGTTCCATGAAGGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GGTAGGGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGTTCCCAGTGTCATTaGCTGTTTGATTTGCGCAAG +
Preference number: 4 (lower is better)
Translates to: GRERRSVAIEVSWDAAAGGSQCH*LFDLRK
Trigger: CTTGCGCAAATCAAACAGCCAATGACACTGGGAACC...ACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCCCTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGATCCACAGGCGCCTGTaGGGTCCGGTGTGTGTCACA +
Preference number: 4 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKIHRRL*GPVCVT
Trigger: TGTGACACACACCGGACCCCACAGGCGCCTGTGGAT...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACAACACTTCACAGCCATaGGTCTCTCGGGGGTGCTGT +
Preference number: 4 (lower is better)
Translates to: ARADVHQNAWLDLSTLPYNTSQP*VSRGCC
Trigger: ACAGCACCCCCGAGAGACCCATGGCTGTGAAGTGTT...GTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR CCA 90 bp GATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAATTGGGATGCTGCCGCTaGTGGAGCCGGAGCTGTTAC +
Preference number: 4 (lower is better)
Translates to: DEQLLPLSLGKVGLRRLKLGCCR*WSRSCY
Trigger: GTAACAGCTCCGGCTCCACCAGCGGCAGCATCCCAA...TTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGGCCATCGAAGTTTCTTaGGATGCTGCCGCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRAIEVS*DAAAGG
Trigger: TCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGC...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CGTCCAGTTTGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGGACTGTGATGATGCCTaGAACCAAGGGGCTCCGTCT +
Preference number: 4 (lower is better)
Translates to: RPVWDEQLLPLSLGKVGLDCDDA*NQGAPS
Trigger: AGACGGAGCCCCTTGGTTCCAGGCATCATCACAGTC...CAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCAAACTGGACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGTCATGGGCAGGGAAGTaGGCCACAATGCCATCACTG +
Preference number: 4 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRSWAGK*ATMPSL
Trigger: CAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGA...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCTGCATGGAGCCTTTATaGAAAAACACCCCGCTCCAA +
Preference number: 4 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSCMEPL*KNTPLQ
Trigger: TTGGAGCGGGGTGTTTTTCCATAAAGGCTCCATGCA...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR TCA 90 bp GGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTGTGTCATTGGCTGTTTaGTTTGCGCAAGAGGCGTCA +
Preference number: 4 (lower is better)
Translates to: GLGLMSTKMPGWIFQLSPVSLAV*FAQEAS
Trigger: TGACGCCTCTTGCGCAAATCAAACAGCCAATGACAC...AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGAGCGAGGAGCAGAGGGTaGTTCGCATTGAATGGCGGC +
Preference number: 4 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRARSRG*FALNGG
Trigger: GCCGCCATTCAATGCGAATCACCCTCTGCTCCTCGC...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGAAGAGACAGCACGGGATaGCCCTGGCATGCTGACTGG +
Preference number: 4 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRRDSTG*PWHADW
Trigger: CCAGTCAGCATGCCAGGGTCATCCCGTGCTGTCTCT...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCCCGGAGGCCCTCCTCTaGGTGCTCCATGGAGGACAT +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSPEALL*VLHGGH
Trigger: ATGTCCTCCATGGAGCACTCAGAGGAGGGCCTCCGG...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAAACGTCTCGGCTTGGTaGCTCGGCCATGGCATCTGC +
Preference number: 4 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTNVSAW*LGHGIC
Trigger: GCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTT...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCGGTGGTGTCGTGCCTaGAGATCCAATGCTCTTACA +
Preference number: 4 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRRWCRA*RSNALT
Trigger: TGTAAGAGCATTGGATCTTCAGGCACGACACCACCG...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATATGGGTGTTTTAAACTaGATGGACTTGACCATTTCC +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADMGVLN*MDLTIS
Trigger: GGAAATGGTCAAGTCCATTCAGTTTAAAACACCCAT...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp ACAGGAAGGGGCAGGGCAGAGTCTAAGGTGGAAAGCACAAACTCAAAGTTAGCCGGCCACCATAAGGATTaGTGGGGAAAACGTGGGACG +
Preference number: 4 (lower is better)
Translates to: TGRGRAESKVESTNSKLAGHHKD*WGKRGT
Trigger: CGTCCCACGTTTTCCCCATCAATCCTTATGGTGGCC...GGCTAACTTTGAGTTTGTGCTTTCCACCTTAGACTCTGCCCTGCCCCTTCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR TCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATAGAAATTTGTGGAGGTaGTTTAACTTTGCATGGAGC +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADRNLWR*FNFAWS
Trigger: GCTCCATGCAAAGTTAAATCACCTCCACAAATTTCT...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR GCA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGCTGGTAATACTGCACTaGTTCTGCAGCGAGGAGCAG +
Preference number: 4 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKLVILH*FCSEEQ
Trigger: CTGCTCCTCGCTGCAGAAGCAGTGCAGTATTACCAG...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp TGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGCTGGTAATACTGCACTaGTTCTGCAGCGAGGAGCAG +
Preference number: 4 (lower is better)
Translates to: WDEQLLPLSLGKVGLRRLLVILH*FCSEEQ
Trigger: CTGCTCCTCGCTGCAGAAGCAGTGCAGTATTACCAG...CAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTTGTGGCACAACATCCTaGAGAAAAGTCACGACGCTC +
Preference number: 4 (lower is better)
Translates to: GLGLMSTKMPGWIFQLSPCGTTS*RKVTTL
Trigger: GAGCGTCGTGACTTTTCTGCAGGATGTTGTGCCACA...AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR GCA 90 bp TGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAGGCAAGATTCTAGCTaGTCGGACTGGACCATGTCG +
Preference number: 4 (lower is better)
Translates to: WDEQLLPLSLGKVGLRRLRQDSS*SDWTMS
Trigger: CGACATGGTCCAGTCCGAGCAGCTAGAATCTTGCCT...CAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR GCA 90 bp TGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTTCATGGAACAGTACAGGGGAAGTGGGCCACAATaGCATCACTGTCCGAGTCCT +
Preference number: 4 (lower is better)
Translates to: CTFDTASVTALPFMEQYRGSGPQ*HHCPSP
Trigger: AGGACTCGGACAGTGATGGCATTGTGGCCCACTTCC...CCTGTACTGTTCCATGAAGGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAAGCCAGAAGGGCTGCTaGACAGGCCTGGAACAGGAC +
Preference number: 4 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTSQKGC*TGLEQD
Trigger: GTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCT...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGTTGCAAACCACGACCTaGAAGTCCCAAACACTGCAG +
Preference number: 4 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQLQTTT*KSQTLQ
Trigger: CTGCAGTGTTTGGGACTTCCAGGTCGTGGTTTGCAA...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCGGACGTCATTATCTCCAGTaGTGTGTCGTCACTTATCTT +
Preference number: 4 (lower is better)
Translates to: RRSVAIEVSWDAAAGGAGRHYLQ*CVVTYL
Trigger: AAGATAAGTGACGACACACCACTGGAGATAATGACG...TCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGGATGGTTTTGAAATaGAATTGTGGGCCCATCCAC +
Preference number: 4 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPWMVLK*NCGPIH
Trigger: GTGGATGGGCCCACAATTCCATTTCAAAACCATCCA...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTTGGTGACTCGGCCATaGCATCTGCAAGCCGTTCCC +
Preference number: 4 (lower is better)
Translates to: DLLDKTCTFDTASVTALPLVTRP*HLQAVP
Trigger: GGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAA...GGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp ACTGAGCTAACTGTCAGCCACATAAAACAACTCAGCACAGGAAGGGGCAGGGCAGACTGTGATGATGCCTaGAACCAAGGGGCTCCGTCT +
Preference number: 4 (lower is better)
Translates to: TELTVSHIKQLSTGRGRADCDDA*NQGAPS
Trigger: AGACGGAGCCCCTTGGTTCCAGGCATCATCACAGTC...TGCCCTGCCCCTTCCTGTGCTGAGTTGTTTTATGTGGCTGACAGTTAGCTCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CCA 90 bp TGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTTCATGGAACAGTACAGGGACTGTGATGATGCCTaGAACCAAGGGGCTCCGTCT +
Preference number: 4 (lower is better)
Translates to: CTFDTASVTALPFMEQYRDCDDA*NQGAPS
Trigger: AGACGGAGCCCCTTGGTTCCAGGCATCATCACAGTC...CCTGTACTGTTCCATGAAGGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGACGCTTTGTTACTGTTaGGCTGTTCACGCACGCTGG +
Preference number: 4 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKTLCYC*AVHARW
Trigger: CCAGCGTGCGTGAACAGCCCAACAGTAACAAAGCGT...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCGCGAGGAGCAGAGGGTaGTTCGCATTGAATGGCGGC +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSARSRG*FALNGG
Trigger: GCCGCCATTCAATGCGAATCACCCTCTGCTCCTCGC...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCGTGCTATGCAGTTCATaGAATTCTAGATTCCGTGAT +
Preference number: 4 (lower is better)
Translates to: ERRSVAIEVSWDAAAGGAVLCSS*NSRFRD
Trigger: ATCACGGAATCTAGAATTTCATGAACTGCATAGCAC...GGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAATCTTCTGTCACCCCTaGGGGCAGTGTGCCTGTCAG +
Preference number: 4 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTIFCHP*GQCACQ
Trigger: CTGACAGGCACACTGCCCTCAGGGGTGACAGAAGAT...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCATACTGCACTGCTTCTaGAGCGAGGAGCAGAGGGTG +
Preference number: 4 (lower is better)
Translates to: DLLDKTCTFDTASVTALPILHCF*SEEQRV
Trigger: CACCCTCTGCTCCTCGCTGCAGAAGCAGTGCAGTAT...GGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp AGTAACCAACAGCCAGTGGCAGCATGTCTGCATACAGAAACGAGGGAGCTGCTGTGTGGCACAACATCCTaGAGAAAAGTCACGACGCTC +
Preference number: 4 (lower is better)
Translates to: SNQQPVAACLHTETRELLCGTTS*RKVTTL
Trigger: GAGCGTCGTGACTTTTCTGCAGGATGTTGTGCCACA...CAGCAGCTCCCTCGTTTCTGTATGCAGACATGCTGCCACTGGCTGTTGGTTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR GCA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCAATCAGCTTATTTTCTaGATAAGCAAGCCAGCGGCT +
Preference number: 4 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSNQLIF*ISKPAA
Trigger: AGCCGCTGGCTTGCTTATGCAGAAAATAAGCTGATT...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCAGCCAGAAGGGCTGCTaGACAGGCCTGGAACAGGAC +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSSQKGC*TGLEQD
Trigger: GTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCT...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CGTCCAGTTTGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGTTGCAAACCACGACCTaGAAGTCCCAAACACTGCAG +
Preference number: 4 (lower is better)
Translates to: RPVWDEQLLPLSLGKVGLLQTTT*KSQTLQ
Trigger: CTGCAGTGTTTGGGACTTCCAGGTCGTGGTTTGCAA...CAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCAAACTGGACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGTTGCAAACCACGACCTaGAAGTCCCAAACACTGCAG +
Preference number: 4 (lower is better)
Translates to: WDEQLLPLSLGKVGLRRLLQTTT*KSQTLQ
Trigger: CTGCAGTGTTTGGGACTTCCAGGTCGTGGTTTGCAA...CAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCATCCAACTACAACTTGTTTaGACTGATCTTTTTCCCGTT +
Preference number: 4 (lower is better)
Translates to: EEAERLALVGRERRSVAIQLQLV*TDLFPV
Trigger: AACGGGAAAAAGATCAGTCCAAACAAGTTGTAGTTG...GATGGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATCAACTACAACTTGTTTaGACTGATCTTTTTCCCGTT +
Preference number: 4 (lower is better)
Translates to: AGVPGGNVHPSLNWARADQLQLV*TDLFPV
Trigger: AACGGGAAAAAGATCAGTCCAAACAAGTTGTAGTTG...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGTTTGAAATGGAATTGTaGGCCCATCCACAGGCGCCT +
Preference number: 4 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKFEMEL*AHPQAP
Trigger: AGGCGCCTGTGGATGGGCCCACAATTCCATTTCAAA...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGTCAGAGCGGACAGGCTaGATCCTGAGGCTGTTAAGA +
Preference number: 4 (lower is better)
Translates to: KMPGWIFQLSPTRGPKIWSERTG*ILRLLR
Trigger: TCTTAACAGCCTCAGGATCCAGCCTGTCCGCTCTGA...CCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAACAGCATCGGTCACTGTaGAAACTCCCCTCCGATCAG +
Preference number: 4 (lower is better)
Translates to: DEQLLPLSLGKVGLRRLKQHRSL*KLPSDQ
Trigger: CTGATCGGAGGGGAGTTTCCACAGTGACCGATGCTG...TTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGATTGGTGACTCGGCCATaGCATCTGCAAGCCGTTCCC +
Preference number: 4 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRLVTRP*HLQAVP
Trigger: GGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAA...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGAACACTTCACAGCCATaGGTCTCTCGGGGGTGCTGT +
Preference number: 4 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKNTSQP*VSRGCC
Trigger: ACAGCACCCCCGAGAGACCCATGGCTGTGAAGTGTT...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR CCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCGGATGCTGCCGCTGGTaGAGCCGGAGCTGTTACTCA +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSGCCRW*SRSCYS
Trigger: TGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATCC...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCTTGGGATGCTGCCGCTaGTGGAGCCGGAGCTGTTAC +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSLGCCR*WSRSCY
Trigger: GTAACAGCTCCGGCTCCACCAGCGGCAGCATCCCAA...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAAGCCATCGAAGTTTCTTaGGATGCTGCCGCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: DEQLLPLSLGKVGLRRLKAIEVS*DAAAGG
Trigger: TCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGC...TTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCAAGAGGCTGAGCGGCTaGCTCTCGTTGGTAGGGAGC +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSKRLSG*LSLVGS
Trigger: GCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTT...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CGTCCAGTTTGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGCCCACTGTAAGCCTGTaGCACAACATCCTGCAGAAA +
Preference number: 4 (lower is better)
Translates to: RPVWDEQLLPLSLGKVGLPTVSL*HNILQK
Trigger: TTTCTGCAGGATGTTGTGCCACAGGCTTACAGTGGG...CAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCAAACTGGACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGCCCACTGTAAGCCTGTaGCACAACATCCTGCAGAAA +
Preference number: 4 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKPTVSL*HNILQK
Trigger: TTTCTGCAGGATGTTGTGCCACAGGCTTACAGTGGG...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGCATACTGGCTTCTCATaGGCAGGGAAGTGGGCCACA +
Preference number: 4 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKHTGFS*AGKWAT
Trigger: TGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTATG...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGGCTGTTCACGCACGCTaGGCTGTTGGCATTGTTTTT +
Preference number: 4 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKAVHAR*AVGIVF
Trigger: AAAAACAATGCCAACAGCCCAGCGTGCGTGAACAGC...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp GATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCGACCGTGGTCTGGCCTaGGGTTTGGATGGTTTTGAA +
Preference number: 4 (lower is better)
Translates to: DLLDKTCTFDTASVTALPDRGLA*GLDGFE
Trigger: TTCAAAACCATCCAAACCTCAGGCCAGACCACGGTC...GGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGCGGTGGTGTCGTGCCTaGAGATCCAATGCTCTTACA +
Preference number: 4 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKRWCRA*RSNALT
Trigger: TGTAAGAGCATTGGATCTTCAGGCACGACACCACCG...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp GATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAAAGTGTGCCTGTCAGTTaGGTCACCACTTTCCCAACC +
Preference number: 4 (lower is better)
Translates to: DEQLLPLSLGKVGLRRLKSVPVS*VTTFPT
Trigger: GGTTGGGAAAGTGGTGACTCAACTGACAGGCACACT...TTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp AAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGAACGGCTCATGCGATTaGCTACTCGTGGTGACATGT +
Preference number: 4 (lower is better)
Translates to: KMPGWIFQLSPTRGPKIWNGSCD*LLVVTC
Trigger: ACATGTCACCACGAGTAGTCAATCGCATGAGCCGTT...CCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCAGAAATTTGTGGAGGTaGTTTAACTTTGCATGGAGC +
Preference number: 4 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPRNLWR*FNFAWS
Trigger: GCTCCATGCAAAGTTAAATCACCTCCACAAATTTCT...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR TCA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCAGAAATTTGTGGAGGTaGTTTAACTTTGCATGGAGC +
Preference number: 4 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSRNLWR*FNFAWS
Trigger: GCTCCATGCAAAGTTAAATCACCTCCACAAATTTCT...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR GCA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGAATACTGCACTGCTTCTaGAGCGAGGAGCAGAGGGTG +
Preference number: 4 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRILHCF*SEEQRV
Trigger: CACCCTCTGCTCCTCGCTGCAGAAGCAGTGCAGTAT...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp AAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGGGTGCTGTTTTTGACTaGTACGTCAAGGGCTGTGTC +
Preference number: 4 (lower is better)
Translates to: KMPGWIFQLSPTRGPKIWGAVFD*YVKGCV
Trigger: GACACAGCCCTTGACGTAGCAGTCAAAAACAGCACC...CCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR GCA 90 bp CCTGGAGGACTGAAATGTCATAGCCAGACTGGGGTCACCTTGGCTGGGGATGCTAATCAGCTTATTTTCTaGATAAGCAAGCCAGCGGCT +
Preference number: 4 (lower is better)
Translates to: PGGLKCHSQTGVTLAGDANQLIF*ISKPAA
Trigger: AGCCGCTGGCTTGCTTATGCAGAAAATAAGCTGATT...AGCATCCCCAGCCAAGGTGACCCCAGTCTGGCTATGACATTTCAGTCCTCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CCA 90 bp GATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAATGTAAGAGTCTTGGCTaGTCAGCTTCCCATGCAGCG +
Preference number: 4 (lower is better)
Translates to: DEQLLPLSLGKVGLRRLKCKSLG*SASHAA
Trigger: CGCTGCATGGGAAGCTGACCAGCCAAGACTCTTACA...TTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCCAACTACAACTTGTTTaGACTGATCTTTTTCCCGTT +
Preference number: 4 (lower is better)
Translates to: ERRSVAIEVSWDAAAGGAQLQLV*TDLFPV
Trigger: AACGGGAAAAAGATCAGTCCAAACAAGTTGTAGTTG...GGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCGTCATTATCTCCAGTaGTGTGTCGTCACTTATCTT +
Preference number: 4 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPRHYLQ*CVVTYL
Trigger: AAGATAAGTGACGACACACCACTGGAGATAATGACG...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGTTTGAAATGGAATTGTaGGCCCATCCACAGGCGCCT +
Preference number: 4 (lower is better)
Translates to: KMPGWIFQLSPTRGPKIWFEMEL*AHPQAP
Trigger: AGGCGCCTGTGGATGGGCCCACAATTCCATTTCAAA...CCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CAATTGCAGCGAGATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTACAGCATCGGTCACTGTaGAAACTCCCCTCCGATCAG +
Preference number: 4 (lower is better)
Translates to: QLQRDLLDKTCTFDTASVQHRSL*KLPSDQ
Trigger: CTGATCGGAGGGGAGTTTCCACAGTGACCGATGCTG...TACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACGCCAGTACAACGACTaGGTCTCCGAGGAGAATCTG +
Preference number: 4 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRRQYND*VSEENL
Trigger: CAGATTCTCCTCGGAGACCCAGTCGTTGTACTGGCG...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCACAGAGAAGAGCTCCTaGGCTTCCCCGCTGATAGGG +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSTEKSS*ASPLIG
Trigger: CCCTATCAGCGGGGAAGCCCAGGAGCTCTTCTCTGT...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGGGCTCCCAAGAGCAATaGGATTCATGTTTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKGSQEQ*DSCLAQ
Trigger: CTGGGCCAAACATGAATCCCATTGCTCTTGGGAGCC...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGTGCATGGAGCCTTTATaGAAAAACACCCCGCTCCAA +
Preference number: 4 (lower is better)
Translates to: WDEQLLPLSLGKVGLRRLCMEPL*KNTPLQ
Trigger: TTGGAGCGGGGTGTTTTTCCATAAAGGCTCCATGCA...CAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR CCA 90 bp GATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCACGCTTTGTTACTGTTaGGCTGTTCACGCACGCTGG +
Preference number: 4 (lower is better)
Translates to: DLLDKTCTFDTASVTALPTLCYC*AVHARW
Trigger: CCAGCGTGCGTGAACAGCCCAACAGTAACAAAGCGT...GGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
3UTR CAA 72 bp AAGGTCTCTTCTCGTCCAGTTTGGGATGAACAGCTGTaGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGA +
Preference number: 4 (lower is better)
Translates to: KVSSRPVWDEQL*PLSLGKVGLRR
Trigger: TCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCAAACTGGACGAGAAGAGACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAAGTGTCATTGGCTGTTTaGTTTGCGCAAGAGGCGTCA +
Preference number: 4 (lower is better)
Translates to: DEQLLPLSLGKVGLRRLKVSLAV*FAQEAS
Trigger: TGACGCCTCTTGCGCAAATCAAACAGCCAATGACAC...TTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCAGAAATTTGTGGAGGTaGTTTAACTTTGCCTGTTCG +
Preference number: 4 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPRNLWR*FNFACS
Trigger: CGAACAGGCAAAGTTAAATCACCTCCACAAATTTCT...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092822.5
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp CAATTGCAGCGAGATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAGACCGTGGTCTGGCCTaGGGTTTGGATGGTTTTGAA +
Preference number: 4 (lower is better)
Translates to: QLQRDLLDKTCTFDTASVDRGLA*GLDGFE
Trigger: TTCAAAACCATCCAAACCTCAGGCCAGACCACGGTC...TACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp AGGCAGTCAGATCTCTGTGAGTTCAAGAACAGGCTGATCTATAGAGTAAGTTCCATCTTCTGTCACCCCTaGGGGCAGTGTGCCTGTCAG +
Preference number: 4 (lower is better)
Translates to: RQSDLCEFKNRLIYRVSSIFCHP*GQCACQ
Trigger: CTGACAGGCACACTGCCCTCAGGGGTGACAGAAGAT...GGAACTTACTCTATAGATCAGCCTGTTCTTGAACTCACAGAGATCTGACTGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144276.2
CDS-3UTR GCA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACTGGTAATACTGCACTaGTTCTGCAGCGAGGAGCAG +
Preference number: 4 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRLVILH*FCSEEQ
Trigger: CTGCTCCTCGCTGCAGAAGCAGTGCAGTATTACCAG...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCAGGCCCTCCTCTGAGTaGTCCATGGAGGACATATGC +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSRPSSE*SMEDIC
Trigger: GCATATGTCCTCCATGGAGCACTCAGAGGAGGGCCT...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp AAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGGCAGCAATTTTCTCCTaGAAGACTACGACGAGGATC +
Preference number: 4 (lower is better)
Translates to: KMPGWIFQLSPTRGPKIWAAIFS*KTTTRI
Trigger: GATCCTCGTCGTAGTCTTGCAGGAGAAAATTGCTGC...CCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACATGTAAGAGTCTTGGCTaGTCAGCTTCCCATGCAGCG +
Preference number: 4 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTCKSLG*SASHAA
Trigger: CGCTGCATGGGAAGCTGACCAGCCAAGACTCTTACA...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CAATTGCAGCGAGATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTATGTAAGAGTCTTGGCTaGTCAGCTTCCCATGCAGCG +
Preference number: 4 (lower is better)
Translates to: QLQRDLLDKTCTFDTASVCKSLG*SASHAA
Trigger: CGCTGCATGGGAAGCTGACCAGCCAAGACTCTTACA...TACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCGTCACAATTTCAACCTaGGAAAGCCATTCTTCATCT +
Preference number: 4 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPVTIST*ESHSSS
Trigger: AGATGAAGAATGGCTTTCCCAGGTTGAAATTGTGAC...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGATCAGAGCGGACAGGCTaGATCCTGAGGCTGTTAAGA +
Preference number: 4 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRSERTG*ILRLLR
Trigger: TCTTAACAGCCTCAGGATCCAGCCTGTCCGCTCTGA...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCCAGCATCGGTCACTGTaGAAACTCCCCTCCGATCAG +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSQHRSL*KLPSDQ
Trigger: CTGATCGGAGGGGAGTTTCCACAGTGACCGATGCTG...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp ACTTTAGTAACATCAGGCACAGTAACCAACAGCCAGTGGCAGCATGTCTGCATACGCCAGTACAACGACTaGGTCTCCGAGGAGAATCTG +
Preference number: 4 (lower is better)
Translates to: TLVTSGTVTNSQWQHVCIRQYND*VSEENL
Trigger: CAGATTCTCCTCGGAGACCCAGTCGTTGTACTGGCG...TATGCAGACATGCTGCCACTGGCTGTTGGTTACTGTGCCTGATGTTACTAAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CCA 90 bp TGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTTCATGGAACAGTACAGGTGCATGGAGCCTTTATaGAAAAACACCCCGCTCCAA +
Preference number: 4 (lower is better)
Translates to: CTFDTASVTALPFMEQYRCMEPL*KNTPLQ
Trigger: TTGGAGCGGGGTGTTTTTCCATAAAGGCTCCATGCA...CCTGTACTGTTCCATGAAGGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR TCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGAGAAATTTGTGGAGGTaGTTTAACTTTGCCTGTTCG +
Preference number: 4 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQRNLWR*FNFACS
Trigger: CGAACAGGCAAAGTTAAATCACCTCCACAAATTTCT...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092822.5
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGAAACTCACCGCCCATTaGTTTGCTTGGAGAAATTTG +
Preference number: 4 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKKLTAH*FAWRNL
Trigger: CAAATTTCTCCAAGCAAATCAATGGGCGGTGAGTTT...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp ACTGAGCTAACTGTCAGCCACATAAAACAACTCAGCACAGGAAGGGGCAGGGCACTGCATTCTCAAATCTaGCCCAGACTATCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: TELTVSHIKQLSTGRGRALHSQI*PRLSSP
Trigger: AGGAGAAGATAGTCTGGGTCAGATTTGAGAATGCAG...TGCCCTGCCCCTTCCTGTGCTGAGTTGTTTTATGTGGCTGACAGTTAGCTCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR TCA 90 bp TGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTTCATGGAACAGTACAGGCTGCATTCTCAAATCTaGCCCAGACTATCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: CTFDTASVTALPFMEQYRLHSQI*PRLSSP
Trigger: AGGAGAAGATAGTCTGGGTCAGATTTGAGAATGCAG...CCTGTACTGTTCCATGAAGGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp ACTTTAGTAACATCAGGCACAGTAACCAACAGCCAGTGGCAGCATGTCTGCATACGGTGGTGTCGTGCCTaGAGATCCAATGCTCTTACA +
Preference number: 4 (lower is better)
Translates to: TLVTSGTVTNSQWQHVCIRWCRA*RSNALT
Trigger: TGTAAGAGCATTGGATCTTCAGGCACGACACCACCG...TATGCAGACATGCTGCCACTGGCTGTTGGTTACTGTGCCTGATGTTACTAAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR TCA 90 bp CAATTGCAGCGAGATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAATTGACTACTCGTGGTaGCATGTGTGTGCGGACACA +
Preference number: 4 (lower is better)
Translates to: QLQRDLLDKTCTFDTASVIDYSW*HVCADT
Trigger: TGTGTCCGCACACACATGTCACCACGAGTAGTCAAT...TACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GAGGAACAACAAATATTTCTTACTGAATGGCAGTACCAGGCCAGTACATTAAGAGGGAGCCAGAAGGGCTaGTGGACAGGCCTGGAACAG +
Preference number: 4 (lower is better)
Translates to: EEQQIFLTEWQYQASTLRGSQKG*WTGLEQ
Trigger: CTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCC...TCTTAATGTACTGGCCTGGTACTGCCATTCAGTAAGAAATATTTGTTGTTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR GCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCCTGGTAATACTGCACTaGTTCTGCAGCGAGGAGCAG +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSLVILH*FCSEEQ
Trigger: CTGCTCCTCGCTGCAGAAGCAGTGCAGTATTACCAG...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTACTCAGAGTCTCGATaGTTCCCTCTCGCTGAAGTT +
Preference number: 4 (lower is better)
Translates to: DLLDKTCTFDTASVTALPYSESR*FPLAEV
Trigger: AACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTA...GGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp GATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAATACTCAGAGTCTCGATaGTTCCCTCTCGCTGAAGTT +
Preference number: 4 (lower is better)
Translates to: DEQLLPLSLGKVGLRRLKYSESR*FPLAEV
Trigger: AACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTA...TTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp AGGCAGTCAGATCTCTGTGAGTTCAAGAACAGGCTGATCTATAGAGTAAGTTCCGGAAGTGGGCCACAATaGCATCACTGTCCGAGTCCT +
Preference number: 4 (lower is better)
Translates to: RQSDLCEFKNRLIYRVSSGSGPQ*HHCPSP
Trigger: AGGACTCGGACAGTGATGGCATTGTGGCCCACTTCC...GGAACTTACTCTATAGATCAGCCTGTTCTTGAACTCACAGAGATCTGACTGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144276.2
CDS-3UTR CCA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGGTCACAATTTCAACCTaGGAAAGCCATTCTTCATCT +
Preference number: 4 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQVTIST*ESHSSS
Trigger: AGATGAAGAATGGCTTTCCCAGGTTGAAATTGTGAC...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACATTTGAAATGGAATTGTaGGCCCATCCACAGGCGCCT +
Preference number: 4 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTFEMEL*AHPQAP
Trigger: AGGCGCCTGTGGATGGGCCCACAATTCCATTTCAAA...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CGTCCAGTTTGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAATGGGATTCATGTTTaGCCCAGGACAAGGATAACA +
Preference number: 4 (lower is better)
Translates to: RPVWDEQLLPLSLGKVGLNGIHV*PRTRIT
Trigger: TGTTATCCTTGTCCTGGGCCAAACATGAATCCCATT...CAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCAAACTGGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACAATGGGATTCATGTTTaGCCCAGGACAAGGATAACA +
Preference number: 4 (lower is better)
Translates to: ARADVHQNAWLDLSTLPYNGIHV*PRTRIT
Trigger: TGTTATCCTTGTCCTGGGCCAAACATGAATCCCATT...GTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AGGCAGTCAGATCTCTGTGAGTTCAAGAACAGGCTGATCTATAGAGTAAGTTCCTCATGGGCAGGGAAGTaGGCCACAATGCCATCACTG +
Preference number: 4 (lower is better)
Translates to: RQSDLCEFKNRLIYRVSSSWAGK*ATMPSL
Trigger: CAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGA...GGAACTTACTCTATAGATCAGCCTGTTCTTGAACTCACAGAGATCTGACTGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144276.2
CDS-3UTR CCA 90 bp GGTGTATGTCTTTATTTCCAGCACTTAGGAGGCAGAGGCAGTCAGATCTCTGTGAGCCATACAGCATACTaGCTTCTCATGGGCAGGGAA +
Preference number: 4 (lower is better)
Translates to: GVCLYFQHLGGRGSQISVSHTAY*LLMGRE
Trigger: TTCCCTGCCCATGAGAAGCCAGTATGCTGTATGGCT...CACAGAGATCTGACTGCCTCTGCCTCCTAAGTGCTGGAAATAAAGACATACACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144276.2
CDS-3UTR TCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCGTGTCATTGGCTGTTTaGTTTGCGCAAGAGGCGTCA +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSVSLAV*FAQEAS
Trigger: TGACGCCTCTTGCGCAAATCAAACAGCCAATGACAC...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp AAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGAAACTCACCGCCCATTaGTTTGCTTGGAGAAATTTG +
Preference number: 4 (lower is better)
Translates to: KMPGWIFQLSPTRGPKIWKLTAH*FAWRNL
Trigger: CAAATTTCTCCAAGCAAATCAATGGGCGGTGAGTTT...CCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGGTGCTATGCAGTTCATaGAATTCTAGATTCCGTGAT +
Preference number: 4 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKVLCSS*NSRFRD
Trigger: ATCACGGAATCTAGAATTTCATGAACTGCATAGCAC...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp AGGCAGTCAGATCTCTGTGAGTTCAAGAACAGGCTGATCTATAGAGTAAGTTCCAGTGTGCCTGTCAGTTaGGTCACCACTTTCCCAACC +
Preference number: 4 (lower is better)
Translates to: RQSDLCEFKNRLIYRVSSSVPVS*VTTFPT
Trigger: GGTTGGGAAAGTGGTGACTCAACTGACAGGCACACT...GGAACTTACTCTATAGATCAGCCTGTTCTTGAACTCACAGAGATCTGACTGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144276.2
CDS-3UTR TCA 90 bp ATATTTTGTCCTGCGATACCATATGGGAGGAATCCCAGAGAACTTTACACAAACATCTTCTGTCACCCCTaGGGGCAGTGTGCCTGTCAG +
Preference number: 4 (lower is better)
Translates to: IFCPAIPYGRNPRELYTNIFCHP*GQCACQ
Trigger: CTGACAGGCACACTGCCCTCAGGGGTGACAGAAGAT...GTTTGTGTAAAGTTCTCTGGGATTCCTCCCATATGGTATCGCAGGACAAAATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR GCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCTGTGGCACAACATCCTaGAGAAAAGTCACGACGCTC +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSCGTTS*RKVTTL
Trigger: GAGCGTCGTGACTTTTCTGCAGGATGTTGTGCCACA...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGGTTCCCAGTGTCATTaGCTGTTTGATTTGCGCAAG +
Preference number: 4 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTGSQCH*LFDLRK
Trigger: CTTGCGCAAATCAAACAGCCAATGACACTGGGAACC...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGAGGTTCCCAGTGTCATTaGCTGTTTGATTTGCGCAAG +
Preference number: 4 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRGSQCH*LFDLRK
Trigger: CTTGCGCAAATCAAACAGCCAATGACACTGGGAACC...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCTTGCAAACCACGACCTaGAAGTCCCAAACACTGCAG +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSLQTTT*KSQTLQ
Trigger: CTGCAGTGTTTGGGACTTCCAGGTCGTGGTTTGCAA...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTCAACTACAACTTGTTTaGACTGATCTTTTTCCCGTT +
Preference number: 4 (lower is better)
Translates to: GLGLMSTKMPGWIFQLSPQLQLV*TDLFPV
Trigger: AACGGGAAAAAGATCAGTCCAAACAAGTTGTAGTTG...AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp TGTGAGTTCAAGAACAGGCTGATCTATAGAGTAAGTTCCAGAACAGCCAAAGCAGACTGTGATGATGCCTaGAACCAAGGGGCTCCGTCT +
Preference number: 4 (lower is better)
Translates to: CEFKNRLIYRVSSRTAKADCDDA*NQGAPS
Trigger: AGACGGAGCCCCTTGGTTCCAGGCATCATCACAGTC...TGCTTTGGCTGTTCTGGAACTTACTCTATAGATCAGCCTGTTCTTGAACTCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144276.2
CDS-3UTR CCA 90 bp CTACTAAGGAGACCATGCAACTCTCCAGAAAATAAGTATCAACGCATGAAGTCCTCATGGGCAGGGAAGTaGGCCACAATGCCATCACTG +
Preference number: 4 (lower is better)
Translates to: LLRRPCNSPENKYQRMKSSWAGK*ATMPSL
Trigger: CAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGA...GGACTTCATGCGTTGATACTTATTTTCTGGAGAGTTGCATGGTCTCCTTAGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CCA 90 bp CTCTGTGAGTTCAAGAACAGGCTGATCTATAGAGTAAGTTCCAGAACAGCCAAACATACTGGCTTCTCATaGGCAGGGAAGTGGGCCACA +
Preference number: 4 (lower is better)
Translates to: LCEFKNRLIYRVSSRTAKHTGFS*AGKWAT
Trigger: TGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTATG...TTTGGCTGTTCTGGAACTTACTCTATAGATCAGCCTGTTCTTGAACTCACAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144276.2
CDS-3UTR TCA 90 bp GATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCAAACTCACCGCCCATTaGTTTGCTTGGAGAAATTTG +
Preference number: 4 (lower is better)
Translates to: DLLDKTCTFDTASVTALPKLTAH*FAWRNL
Trigger: CAAATTTCTCCAAGCAAATCAATGGGCGGTGAGTTT...GGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp ACTGAGCTAACTGTCAGCCACATAAAACAACTCAGCACAGGAAGGGGCAGGGCAATGGGTGTTTTAAACTaGATGGACTTGACCATTTCC +
Preference number: 4 (lower is better)
Translates to: TELTVSHIKQLSTGRGRAMGVLN*MDLTIS
Trigger: GGAAATGGTCAAGTCCATTCAGTTTAAAACACCCAT...TGCCCTGCCCCTTCCTGTGCTGAGTTGTTTTATGTGGCTGACAGTTAGCTCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR TCA 90 bp CTACTAAGGAGACCATGCAACTCTCCAGAAAATAAGTATCAACGCATGAAGTCCAGTGTGCCTGTCAGTTaGGTCACCACTTTCCCAACC +
Preference number: 4 (lower is better)
Translates to: LLRRPCNSPENKYQRMKSSVPVS*VTTFPT
Trigger: GGTTGGGAAAGTGGTGACTCAACTGACAGGCACACT...GGACTTCATGCGTTGATACTTATTTTCTGGAGAGTTGCATGGTCTCCTTAGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR TCA 90 bp GAGGAACAACAAATATTTCTTACTGAATGGCAGTACCAGGCCAGTACATTAAGATACCCCGGAGGGTACTaGCCACCACCCAACGACAAT +
Preference number: 4 (lower is better)
Translates to: EEQQIFLTEWQYQASTLRYPGGY*PPPNDN
Trigger: ATTGTCGTTGGGTGGTGGTCAGTACCCTCCGGGGTA...TCTTAATGTACTGGCCTGGTACTGCCATTCAGTAAGAAATATTTGTTGTTCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR GCA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGAATCAGCTTATTTTCTaGATAAGCAAGCCAGCGGCT +
Preference number: 4 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKNQLIF*ISKPAA
Trigger: AGCCGCTGGCTTGCTTATGCAGAAAATAAGCTGATT...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR GCA 90 bp TACTGGAGGAACAACAAATATTTCTTACTGAATGGCAGTACCAGGCCAGTACATGGAAGTGGGCCACAATaGCATCACTGTCCGAGTCCT +
Preference number: 4 (lower is better)
Translates to: YWRNNKYFLLNGSTRPVHGSGPQ*HHCPSP
Trigger: AGGACTCGGACAGTGATGGCATTGTGGCCCACTTCC...ATGTACTGGCCTGGTACTGCCATTCAGTAAGAAATATTTGTTGTTCCTCCAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR GCA 90 bp AGAGAACTTTACACAAACATGAAGTACAAGTACAGAGATGATGACAGGCCTACTGTGGTGACATGTGTGTaGGGACACAAGGCTGGCCAC +
Preference number: 4 (lower is better)
Translates to: RELYTNMKYKYRDDDRPTVVTCV*GHKAGH
Trigger: GTGGCCAGCCTTGTGTCCGCACACACATGTCACCAC...AGTAGGCCTGTCATCATCTCTGTACTTGTACTTCATGTTTGTGTAAAGTTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCGGTTCCCAGTGTCATTaGCTGTTTGATTTGCGCAAG +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSGSQCH*LFDLRK
Trigger: CTTGCGCAAATCAAACAGCCAATGACACTGGGAACC...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGCGTCATTATCTCCAGTaGTGTGTCGTCACTTATCTT +
Preference number: 4 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKRHYLQ*CVVTYL
Trigger: AAGATAAGTGACGACACACCACTGGAGATAATGACG...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGGTCACAATTTCAACCTaGGAAAGCCATTCTTCATCT +
Preference number: 4 (lower is better)
Translates to: KMPGWIFQLSPTRGPKIWVTIST*ESHSSS
Trigger: AGATGAAGAATGGCTTTCCCAGGTTGAAATTGTGAC...CCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACATGGATGGTTTTGAAATaGAATTGTGGGCCCATCCAC +
Preference number: 4 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTWMVLK*NCGPIH
Trigger: GTGGATGGGCCCACAATTCCATTTCAAAACCATCCA...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp GAGGAACAACAAATATTTCTTACTGAATGGCAGTACCAGGCCAGTACATTAAGAACAGAGAAGAGCTCCTaGGCTTCCCCGCTGATAGGG +
Preference number: 4 (lower is better)
Translates to: EEQQIFLTEWQYQASTLRTEKSS*ASPLIG
Trigger: CCCTATCAGCGGGGAAGCCCAGGAGCTCTTCTCTGT...TCTTAATGTACTGGCCTGGTACTGCCATTCAGTAAGAAATATTTGTTGTTCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CCA 90 bp AACATGAAGTACAAGTACAGAGATGATGACAGGCCTACTGGAGGAACAACAAATCATACTGGCTTCTCATaGGCAGGGAAGTGGGCCACA +
Preference number: 4 (lower is better)
Translates to: NMKYKYRDDDRPTGGTTNHTGFS*AGKWAT
Trigger: TGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTATG...ATTTGTTGTTCCTCCAGTAGGCCTGTCATCATCTCTGTACTTGTACTTCATGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CCA 90 bp TGTGAGTTCAAGAACAGGCTGATCTATAGAGTAAGTTCCAGAACAGCCAAAGCAAGTGAAACCCAGTTTTaGCCTCGGTCTCTCCCCTGT +
Preference number: 4 (lower is better)
Translates to: CEFKNRLIYRVSSRTAKASETQF*PRSLPC
Trigger: ACAGGGGAGAGACCGAGGCCAAAACTGGGTTTCACT...TGCTTTGGCTGTTCTGGAACTTACTCTATAGATCAGCCTGTTCTTGAACTCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144276.2
CDS-3UTR TCA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGAAAACTCACCGCCCATTaGTTTGCTTGGAGAAATTTG +
Preference number: 4 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRKLTAH*FAWRNL
Trigger: CAAATTTCTCCAAGCAAATCAATGGGCGGTGAGTTT...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCCTGCATTCTCAAATCTaGCCCAGACTATCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSLHSQI*PRLSSP
Trigger: AGGAGAAGATAGTCTGGGTCAGATTTGAGAATGCAG...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp AACATGAAGTACAAGTACAGAGATGATGACAGGCCTACTGGAGGAACAACAAATTTCCCCAGTCCGGAGTaGATACAGATCCACACAGCA +
Preference number: 4 (lower is better)
Translates to: NMKYKYRDDDRPTGGTTNFPSPE*IQIHTA
Trigger: TGCTGTGTGGATCTGTATTCACTCCGGACTGGGGAA...ATTTGTTGTTCCTCCAGTAGGCCTGTCATCATCTCTGTACTTGTACTTCATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR TCA 90 bp GATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCATGGGTGTTTTAAACTaGATGGACTTGACCATTTCC +
Preference number: 4 (lower is better)
Translates to: DLLDKTCTFDTASVTALPMGVLN*MDLTIS
Trigger: GGAAATGGTCAAGTCCATTCAGTTTAAAACACCCAT...GGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR TCA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAAGGATTTGGAAGACATaGAAGTCATGGCCAAGAGTA +
Preference number: 4 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTRIWKT*KSWPRV
Trigger: TACTCTTGGCCATGACTTTCATGTCTTCCAAATCCT...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR TCA 90 bp GGTGTATGTCTTTATTTCCAGCACTTAGGAGGCAGAGGCAGTCAGATCTCTGTGAGGATTTGGAAGACATaGAAGTCATGGCCAAGAGTA +
Preference number: 4 (lower is better)
Translates to: GVCLYFQHLGGRGSQISVRIWKT*KSWPRV
Trigger: TACTCTTGGCCATGACTTTCATGTCTTCCAAATCCT...CACAGAGATCTGACTGCCTCTGCCTCCTAAGTGCTGGAAATAAAGACATACACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144276.2
CDS-3UTR GCA 90 bp TACTGGAGGAACAACAAATATTTCTTACTGAATGGCAGTACCAGGCCAGTACATAGGCAAGATTCTAGCTaGTCGGACTGGACCATGTCG +
Preference number: 4 (lower is better)
Translates to: YWRNNKYFLLNGSTRPVHRQDSS*SDWTMS
Trigger: CGACATGGTCCAGTCCGAGCAGCTAGAATCTTGCCT...ATGTACTGGCCTGGTACTGCCATTCAGTAAGAAATATTTGTTGTTCCTCCAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR GCA 90 bp ATATTTTGTCCTGCGATACCATATGGGAGGAATCCCAGAGAACTTTACACAAACCTACAGCGGCCGCCTTaGTTAGATGTCAGCTCTTGT +
Preference number: 4 (lower is better)
Translates to: IFCPAIPYGRNPRELYTNLQRPP*LDVSSC
Trigger: ACAAGAGCTGACATCTAAGCAAGGCGGCCGCTGTAG...GTTTGTGTAAAGTTCTCTGGGATTCCTCCCATATGGTATCGCAGGACAAAATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR GCA 90 bp GAGGAACAACAAATATTTCTTACTGAATGGCAGTACCAGGCCAGTACATTAAGAGGAAAGTGTTTACCATaGAGCGGGGAGCCAGAAGGG +
Preference number: 4 (lower is better)
Translates to: EEQQIFLTEWQYQASTLRGKCLP*SGEPEG
Trigger: CCCTTCTGGCTCCCCGCTGCATGGTAAACACTTTCC...TCTTAATGTACTGGCCTGGTACTGCCATTCAGTAAGAAATATTTGTTGTTCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CCA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACACGTCATTATCTCCAGTaGTGTGTCGTCACTTATCTT +
Preference number: 4 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTRHYLQ*CVVTYL
Trigger: AAGATAAGTGACGACACACCACTGGAGATAATGACG...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCTGGATGGTTTTGAAATaGAATTGTGGGCCCATCCAC +
Preference number: 4 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSWMVLK*NCGPIH
Trigger: GTGGATGGGCCCACAATTCCATTTCAAAACCATCCA...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CTACTAAGGAGACCATGCAACTCTCCAGAAAATAAGTATCAACGCATGAAGTCCCCCACTGTAAGCCTGTaGCACAACATCCTGCAGAAA +
Preference number: 4 (lower is better)
Translates to: LLRRPCNSPENKYQRMKSPTVSL*HNILQK
Trigger: TTTCTGCAGGATGTTGTGCCACAGGCTTACAGTGGG...GGACTTCATGCGTTGATACTTATTTTCTGGAGAGTTGCATGGTCTCCTTAGTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CCA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAAATGGGATTCATGTTTaGCCCAGGACAAGGATAACA +
Preference number: 4 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTNGIHV*PRTRIT
Trigger: TGTTATCCTTGTCCTGGGCCAAACATGAATCCCATT...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp ATATTTTGTCCTGCGATACCATATGGGAGGAATCCCAGAGAACTTTACACAAACGGCTCCCAAGAGCAATaGGATTCATGTTTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: IFCPAIPYGRNPRELYTNGSQEQ*DSCLAQ
Trigger: CTGGGCCAAACATGAATCCCATTGCTCTTGGGAGCC...GTTTGTGTAAAGTTCTCTGGGATTCCTCCCATATGGTATCGCAGGACAAAATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CCA 90 bp CTACTAAGGAGACCATGCAACTCTCCAGAAAATAAGTATCAACGCATGAAGTCCAGCCATACAGCATACTaGCTTCTCATGGGCAGGGAA +
Preference number: 4 (lower is better)
Translates to: LLRRPCNSPENKYQRMKSSHTAY*LLMGRE
Trigger: TTCCCTGCCCATGAGAAGCCAGTATGCTGTATGGCT...GGACTTCATGCGTTGATACTTATTTTCTGGAGAGTTGCATGGTCTCCTTAGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR GCA 90 bp CAATTGCAGCGAGATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTAGAGGCTCATTTCCAGTaGTATGCAGTTCATGAAATT +
Preference number: 4 (lower is better)
Translates to: QLQRDLLDKTCTFDTASVEAHFQ*YAVHEI
Trigger: AATTTCATGAACTGCATAGCACTGGAAATGAGCCTC...TACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CCA 90 bp GATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAACAACTACAACTTGTTTaGACTGATCTTTTTCCCGTT +
Preference number: 4 (lower is better)
Translates to: DEQLLPLSLGKVGLRRLKQLQLV*TDLFPV
Trigger: AACGGGAAAAAGATCAGTCCAAACAAGTTGTAGTTG...TTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGAGTCACAATTTCAACCTaGGAAAGCCATTCTTCATCT +
Preference number: 4 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRVTIST*ESHSSS
Trigger: AGATGAAGAATGGCTTTCCCAGGTTGAAATTGTGAC...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CCA 90 bp AGAGAACTTTACACAAACATGAAGTACAAGTACAGAGATGATGACAGGCCTACTTTGGGCACCCAACTGTaGAGCAGGCAAGATTCTAGC +
Preference number: 4 (lower is better)
Translates to: RELYTNMKYKYRDDDRPTLGTQL*SRQDSS
Trigger: GCTAGAATCTTGCCTGCTCCACAGTTGGGTGCCCAA...AGTAGGCCTGTCATCATCTCTGTACTTGTACTTCATGTTTGTGTAAAGTTCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR TCA 90 bp CGGGCACTACTAAGGAGACCATGCAACTCTCCAGAAAATAAGTATCAACGCATGGTGCTATGCAGTTCATaGAATTCTAGATTCCGTGAT +
Preference number: 4 (lower is better)
Translates to: RALLRRPCNSPENKYQRMVLCSS*NSRFRD
Trigger: ATCACGGAATCTAGAATTTCATGAACTGCATAGCAC...CATGCGTTGATACTTATTTTCTGGAGAGTTGCATGGTCTCCTTAGTAGTGCCCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR TCA 90 bp AGAGAACTTTACACAAACATGAAGTACAAGTACAGAGATGATGACAGGCCTACTATTGACTACTCGTGGTaGCATGTGTGTGCGGACACA +
Preference number: 4 (lower is better)
Translates to: RELYTNMKYKYRDDDRPTIDYSW*HVCADT
Trigger: TGTGTCCGCACACACATGTCACCACGAGTAGTCAAT...AGTAGGCCTGTCATCATCTCTGTACTTGTACTTCATGTTTGTGTAAAGTTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR TCA 90 bp AGAGAACTTTACACAAACATGAAGTACAAGTACAGAGATGATGACAGGCCTACTAACGGCTCATGCGATTaGCTACTCGTGGTGACATGT +
Preference number: 4 (lower is better)
Translates to: RELYTNMKYKYRDDDRPTNGSCD*LLVVTC
Trigger: ACATGTCACCACGAGTAGTCAATCGCATGAGCCGTT...AGTAGGCCTGTCATCATCTCTGTACTTGTACTTCATGTTTGTGTAAAGTTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR TCA 90 bp CTACTAAGGAGACCATGCAACTCTCCAGAAAATAAGTATCAACGCATGAAGTCCTACTGGAAAGCAGCATaGGAGGAAAGTGTTTACCAT +
Preference number: 4 (lower is better)
Translates to: LLRRPCNSPENKYQRMKSYWKAA*EESVYH
Trigger: ATGGTAAACACTTTCCTCTCATGCTGCTTTCCAGTA...GGACTTCATGCGTTGATACTTATTTTCTGGAGAGTTGCATGGTCTCCTTAGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR GCA 90 bp GAGGAACAACAAATATTTCTTACTGAATGGCAGTACCAGGCCAGTACATTAAGAGCAGCAATTTTCTCCTaGAAGACTACGACGAGGATC +
Preference number: 4 (lower is better)
Translates to: EEQQIFLTEWQYQASTLRAAIFS*KTTTRI
Trigger: GATCCTCGTCGTAGTCTTGCAGGAGAAAATTGCTGC...TCTTAATGTACTGGCCTGGTACTGCCATTCAGTAAGAAATATTTGTTGTTCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR TCA 90 bp AGAGAACTTTACACAAACATGAAGTACAAGTACAGAGATGATGACAGGCCTACTAGGATTTGGAAGACATaGAAGTCATGGCCAAGAGTA +
Preference number: 4 (lower is better)
Translates to: RELYTNMKYKYRDDDRPTRIWKT*KSWPRV
Trigger: TACTCTTGGCCATGACTTTCATGTCTTCCAAATCCT...AGTAGGCCTGTCATCATCTCTGTACTTGTACTTCATGTTTGTGTAAAGTTCTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR GCA 90 bp TACTGGAGGAACAACAAATATTTCTTACTGAATGGCAGTACCAGGCCAGTACATGAGGCTCATTTCCAGTaGTATGCAGTTCATGAAATT +
Preference number: 4 (lower is better)
Translates to: YWRNNKYFLLNGSTRPVHEAHFQ*YAVHEI
Trigger: AATTTCATGAACTGCATAGCACTGGAAATGAGCCTC...ATGTACTGGCCTGGTACTGCCATTCAGTAAGAAATATTTGTTGTTCCTCCAGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CCA 90 bp GAGGAACAACAAATATTTCTTACTGAATGGCAGTACCAGGCCAGTACATTAAGAAATGGGATTCATGTTTaGCCCAGGACAAGGATAACA +
Preference number: 4 (lower is better)
Translates to: EEQQIFLTEWQYQASTLRNGIHV*PRTRIT
Trigger: TGTTATCCTTGTCCTGGGCCAAACATGAATCCCATT...TCTTAATGTACTGGCCTGGTACTGCCATTCAGTAAGAAATATTTGTTGTTCCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR TCA 90 bp GAGGAACAACAAATATTTCTTACTGAATGGCAGTACCAGGCCAGTACATTAAGAATAAAAATTTGCATCTaGTCCCAGGTGATAGAGCAA +
Preference number: 4 (lower is better)
Translates to: EEQQIFLTEWQYQASTLRIKICI*SQVIEQ
Trigger: TTGCTCTATCACCTGGGATCAGATGCAAATTTTTAT...TCTTAATGTACTGGCCTGGTACTGCCATTCAGTAAGAAATATTTGTTGTTCCTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS GCA 90 bp AGCCGTTCCCGGAGGCCCTCCTCTGAGTGCTCCATGGAGGACATATaGCGCAGCCCGAAGCCCTCAGGCCAGCTCCCACACACCTCCAGC +
Preference number: 5 (lower is better)
Translates to: SRSRRPSSECSMEDI*RSPKPSGQLPHTSS
Trigger: GCTGGAGGTGTGTGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCATATGTCCTCCATGGAGCACTCAGAGGAGGGCCTCCGGGAACGGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS GCA 90 bp TCGGCCATGGCATCTGCAAGCCGTTCCCGGAGGCCCTCCTCTGAGTaGTCCATGGAGGACATATGCCGCAGCCCGAAGCCCTCAGGCCAG +
Preference number: 5 (lower is better)
Translates to: SAMASASRSRRPSSE*SMEDICRSPKPSGQ
Trigger: CTGGCCTGAGGGCTTCGGGCTGCGGCATATGTCCTCCATGGAGCACTCAGAGGAGGGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000149662.2
ENSMUST00000154396.8
CDS CCA 90 bp TGGCATCTGCAAGCCGTTCCCGGAGGCCCTCCTCTGAGTGCTCCATaGAGGACATATGCCGCAGCCCGAAGCCCTCAGGCCAGCTCCCAC +
Preference number: 5 (lower is better)
Translates to: WHLQAVPGGPPLSAP*RTYAAARSPQASSH
Trigger: GTGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCATATGTCCTCCATGGAGCACTCAGAGGAGGGCCTCCGGGAACGGCTTGCAGATGCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000149662.2
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCCCACAACGTCTCGGCTaGGTGACTCGGCCATGGCAT +
Preference number: 5 (lower is better)
Translates to: GEEAERLALVGRERRSVAPQRLG*VTRPWH
Trigger: ATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGG...GGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR CAA 90 bp CCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGCCACAACGTCTCGGCTaGGTGACTCGGCCATGGCAT +
Preference number: 5 (lower is better)
Translates to: PVGKRLSGWLSLVGSGDRPQRLG*VTRPWH
Trigger: ATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGG...CCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS TCA 90 bp GTCAAGGGCTGTGTCTGTTCCAGATCCCACAACGTCTCGGCTTGGTaGCTCGGCCATGGCATCTGCAAGCCGTTCCCGGAGGCCCTCCTC +
Preference number: 5 (lower is better)
Translates to: VKGCVCSRSHNVSAW*LGHGICKPFPEALL
Trigger: GAGGAGGGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTGGAACAGACACAGCCCTTGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS CCA 90 bp CAGCTTCCCATGCAGCGGGGAGCCAGAAGGGCTGCTGGACAGGCCTaGAACAGGACTACAGCGGCCGCCTTGCTTAGATGTCAGCTCTTG +
Preference number: 5 (lower is better)
Translates to: QLPMQRGARRAAGQA*NRTTAAALLRCQLL
Trigger: CAAGAGCTGACATCTAAGCAAGGCGGCCGCTGTAGTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCCCGCTGCATGGGAAGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS CCA 90 bp TCCCTGTTCCAGATCCCACAACGTCTCGGCTTGGTGACTCGGCCATaGCATCTGCAAGCCGTTCCCGGAGGCCCTCCTCTGAGTGCTCCA +
Preference number: 5 (lower is better)
Translates to: SLFQIPQRLGLVTRP*HLQAVPGGPPLSAP
Trigger: TGGAGCACTCAGAGGAGGGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTGGAACAGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149662.2
CDS-3UTR CAA 90 bp GAAGCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGAGGGCTCCGTCTTGAGTaGCAGTGTAGGGCAACGTCA +
Preference number: 5 (lower is better)
Translates to: EASGEEAERLALVGRERRGLRLE*QCRATS
Trigger: TGACGTTGCCCTACACTGCAACTCAAGACGGAGCCC...TCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CAA 90 bp GGGAAGCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGACACGCTTTGTTACTGTaGGGCTGTTCACGCACGCTG +
Preference number: 5 (lower is better)
Translates to: GKPVGKRLSGWLSLVGSGHALLL*GCSRTL
Trigger: CAGCGTGCGTGAACAGCCCAACAGTAACAAAGCGTG...TCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGCTTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS-3UTR CAA 90 bp GGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCCACGCTTTGTTACTGTaGGGCTGTTCACGCACGCTG +
Preference number: 5 (lower is better)
Translates to: GEEAERLALVGRERRSVAHALLL*GCSRTL
Trigger: CAGCGTGCGTGAACAGCCCAACAGTAACAAAGCGTG...GGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS TCA 90 bp CTCTCGCTGAAGTTCTGTTCCAGATCCCACAACGTCTCGGCTTGGTaGCTCGGCCATGGCATCTGCAAGCCGTTCCCGGAGGCCCTCCTC +
Preference number: 5 (lower is better)
Translates to: LSLKFCSRSHNVSAW*LGHGICKPFPEALL
Trigger: GAGGAGGGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTGGAACAGAACTTCAGCGAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000154396.8
CDS CCA 90 bp TGTCTGTTCCAGATCCCACAACGTCTCGGCTTGGTGACTCGGCCATaGCATCTGCAAGCCGTTCCCGGAGGCCCTCCTCTGAGTGCTCCA +
Preference number: 5 (lower is better)
Translates to: CLFQIPQRLGLVTRP*HLQAVPGGPPLSAP
Trigger: TGGAGCACTCAGAGGAGGGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTGGAACAGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS CCA 90 bp GTTCTGTTCCAGATCCCACAACGTCTCGGCTTGGTGACTCGGCCATaGCATCTGCAAGCCGTTCCCGGAGGCCCTCCTCTGAGTGCTCCA +
Preference number: 5 (lower is better)
Translates to: VLFQIPQRLGLVTRP*HLQAVPGGPPLSAP
Trigger: TGGAGCACTCAGAGGAGGGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTGGAACAGAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp CCCCTCCCAGTCAGTCCCTCTAGGGGTGAGCGGGCCAGCCAGTCAGAAGCAGGTGGAGAAAGCCGGGGATaGCCAGGGTTGTTGTTTGTA +
Preference number: 5 (lower is better)
Translates to: PLPVSPSRGERASQSEAGGESRG*PGLLFV
Trigger: TACAAACAACAACCCTGGCAATCCCCGGCTTTCTCC...ACCTGCTTCTGACTGGCTGGCCCGCTCACCCCTAGAGGGACTGACTGGGAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp CCCCTCCCAGTCAGTCCCTCTAGGGGTGAGCGGGCCAGCCAGTCAGAAGCAGGTCGTTTCAGACCAGCGTaGTTTGCAAACCACGACCTG +
Preference number: 5 (lower is better)
Translates to: PLPVSPSRGERASQSEAGRFRPA*FANHDL
Trigger: CAGGTCGTGGTTTGCAAACAACGCTGGTCTGAAACG...ACCTGCTTCTGACTGGCTGGCCCGCTCACCCCTAGAGGGACTGACTGGGAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTGTCGTCACTTATCTaGGGAGCAGTACTGATCGGC +
Preference number: 5 (lower is better)
Translates to: ASGEEAERLALVGRERRSVSSLI*GAVLIG
Trigger: GCCGATCAGTACTGCTCCCAAGATAAGTGACGACAC...CGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CAA 90 bp CCCCTCCCAGTCAGTCCCTCTAGGGGTGAGCGGGCCAGCCAGTCAGAAGCAGGTGGTTTTGAAATGGAATaGTGGGCCCATCCACAGGCG +
Preference number: 5 (lower is better)
Translates to: PLPVSPSRGERASQSEAGGFEME*WAHPQA
Trigger: CGCCTGTGGATGGGCCCACAATTCCATTTCAAAACC...ACCTGCTTCTGACTGGCTGGCCCGCTCACCCCTAGAGGGACTGACTGGGAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS GCA 90 bp GGGAAGAGAGCCGGCCAGCAGGAGCTGGTAATACTGCACTGCTTCTaGAGCGAGGAGCAGAGGGTGATTCGCATTGAATGGCGGCTGCAG +
Preference number: 5 (lower is better)
Translates to: GKRAGQQELVILHCF*SEEQRVIRIEWRLQ
Trigger: CTGCAGCCGCCATTCAATGCGAATCACCCTCTGCTCCTCGCTGCAGAAGCAGTGCAGTATTACCAGCTCCTGCTGGCCGGCTCTCTTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS GCA 90 bp TCCAGGGGGAAGAGAGCCGGCCAGCAGGAGCTGGTAATACTGCACTaGTTCTGCAGCGAGGAGCAGAGGGTGATTCGCATTGAATGGCGG +
Preference number: 5 (lower is better)
Translates to: SRGKRAGQQELVILH*FCSEEQRVIRIEWR
Trigger: CCGCCATTCAATGCGAATCACCCTCTGCTCCTCGCTGCAGAAGCAGTGCAGTATTACCAGCTCCTGCTGGCCGGCTCTCTTCCCCCTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CCA 90 bp GTGTTTACCATGCAGCGGGGAGCCAGAAGGGCTGCTGGACAGGCCTaGAACAGGACTACAGCGGCCGCCTTGCTTAGATGTCAGCTCTTG +
Preference number: 5 (lower is better)
Translates to: VFTMQRGARRAAGQA*NRTTAAALLRCQLL
Trigger: CAAGAGCTGACATCTAAGCAAGGCGGCCGCTGTAGTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCCCGCTGCATGGTAAACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CAA 90 bp GAAGCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGACAGTGTGCCTGTCAGTaGAGTCACCACTTTCCCAAC +
Preference number: 5 (lower is better)
Translates to: EASGEEAERLALVGRERRQCACQ*SHHFPN
Trigger: GTTGGGAAAGTGGTGACTCAACTGACAGGCACACTG...TCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS CCA 90 bp GCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTaGAGCCGGAGCTGTTACTCAGAGTCTCGATGCTTCCCTCTCGCT +
Preference number: 5 (lower is better)
Translates to: AEIGSHRSFLGCCRW*SRSCYSESRCFPLA
Trigger: AGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CCA 90 bp GGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTaGTGGAGCCGGAGCTGTTACTCAGAGTCTCGATGCTTCCCTCTC +
Preference number: 5 (lower is better)
Translates to: GAEIGSHRSFLGCCR*WSRSCYSESRCFPL
Trigger: GAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CCA 90 bp GCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCATCGAAGTTTCTTaGGATGCTGCCGCTGGTGGAGCCGGAGCTGTTACTCAGAGTCTC +
Preference number: 5 (lower is better)
Translates to: ALVGRERRSVAIEVS*DAAAGGAGAVTQSL
Trigger: GAGACTCTGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCCCTACCAACGAGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCATCGGAGAAAGCCGGGGATaGCCAGGGTTGTTGTTTGTA +
Preference number: 5 (lower is better)
Translates to: EEAERLALVGRERRSVAIGESRG*PGLLFV
Trigger: TACAAACAACAACCCTGGCAATCCCCGGCTTTCTCC...GATGGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CAA 90 bp GCAGGGGTACCTGGGGGCAATGTGCATCCCAGCCTGAACTGGGCTAGGGCTGATGTGTCGTCACTTATCTaGGGAGCAGTACTGATCGGC +
Preference number: 5 (lower is better)
Translates to: AGVPGGNVHPSLNWARADVSSLI*GAVLIG
Trigger: GCCGATCAGTACTGCTCCCAAGATAAGTGACGACAC...ATCAGCCCTAGCCCAGTTCAGGCTGGGATGCACATTGCCCCCAGGTACCCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCATCGAAGGTTTTGAAATGGAATaGTGGGCCCATCCACAGGCG +
Preference number: 5 (lower is better)
Translates to: EAERLALVGRERRSVAIEGFEME*WAHPQA
Trigger: CGCCTGTGGATGGGCCCACAATTCCATTTCAAAACC...TTCGATGGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CAA 90 bp TGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAGCGGCTGGCTCTCGTaGGTAGGGAGCGGAGATCGG +
Preference number: 5 (lower is better)
Translates to: WDEQLLPLSLGKVGLRRLSGWLS*VGSGDR
Trigger: CCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCT...CAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCGGGCTCCGTCTTGAGTaGCAGTGTAGGGCAACGTCA +
Preference number: 5 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPGLRLE*QCRATS
Trigger: TGACGTTGCCCTACACTGCAACTCAAGACGGAGCCC...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS GCA 90 bp GGATGCTGCCGCTGGTGGAGCCGGAGCTGTTACTCAGAGTCTCGATaGTTCCCTCTCGCTGAAGTTCCAAACACTTCACAGCCATGGGTC +
Preference number: 5 (lower is better)
Translates to: GCCRWWSRSCYSESR*FPLAEVPNTSQPWV
Trigger: GACCCATGGCTGTGAAGTGTTTGGAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
CDS GCA 90 bp GGATGCTGCCGCTGGTGGAGCCGGAGCTGTTACTCAGAGTCTCGATaGTTCCCTCTCGCTGAAGTTCTGTTCCAGATCCCACAACGTCTC +
Preference number: 5 (lower is better)
Translates to: GCCRWWSRSCYSESR*FPLAEVLFQIPQRL
Trigger: GAGACGTTGTGGGATCTGGAACAGAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000154396.8
CDS CCA 90 bp TTGGGCACCCAACTGTGGAGCAGGCAAGATTCTAGCTGCTCGGACTaGACCATGTCGTACAGAGAAGAGCTCCTGGGCTTCCCCGCTGAT +
Preference number: 5 (lower is better)
Translates to: LGTQLWSRQDSSCSD*TMSYREELLGFPAD
Trigger: ATCAGCGGGGAAGCCCAGGAGCTCTTCTCTGTACGACATGGTCCAGTCCGAGCAGCTAGAATCTTGCCTGCTCCACAGTTGGGTGCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CAA 90 bp GAAGCCAGTGGGGAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGACGCCCATTGATTTGCTaGGAGAAATTTGTGGAGGTG +
Preference number: 5 (lower is better)
Translates to: EASGEEAERLALVGRERRRPLIC*EKFVEV
Trigger: CACCTCCACAAATTTCTCCAAGCAAATCAATGGGCG...TCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACTGGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CAA 90 bp CGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCGGACGTTTCAGACCAGCGTaGTTTGCAAACCACGACCTG +
Preference number: 5 (lower is better)
Translates to: RRSVAIEVSWDAAAGGAGRFRPA*FANHDL
Trigger: CAGGTCGTGGTTTGCAAACAACGCTGGTCTGAAACG...TCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CAA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGCCACAACGTCTCGGCTaGGTGACTCGGCCATGGCAT +
Preference number: 5 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQPQRLG*VTRPWH
Trigger: ATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGG...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCATCGAATCTCGAACGCACGCTTaGTTACTGTTGGGCTGTTCA +
Preference number: 5 (lower is better)
Translates to: EAERLALVGRERRSVAIESRTHA*LLLGCS
Trigger: TGAACAGCCCAACAGTAACAAAGCGTGCGTTCGAGA...TTCGATGGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS TCA 90 bp GTGGAGCCGGAGCTGTTACTCAGAGTCTCGATGCTTCCCTCTCGCTaGAGTTCTGTTCCAGATCCCACAACGTCTCGGCTTGGTGACTCG +
Preference number: 5 (lower is better)
Translates to: VEPELLLRVSMLPSR*SSVPDPTTSRLGDS
Trigger: CGAGTCACCAAGCCGAGACGTTGTGGGATCTGGAACAGAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCCGGCTCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000154396.8
CDS GCA 90 bp CCATACAGCATACTGGCTTCTCATGGGCAGGGAAGTGGGCCACAATaGCATCACTGTCCGAGTCCTCACTTACAAGCACCTGGCCCTCTC +
Preference number: 5 (lower is better)
Translates to: PYSILASHGQGSGPQ*HHCPSPHLQAPGPL
Trigger: GAGAGGGCCAGGTGCTTGTAAGTGAGGACTCGGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTATGCTGTATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000144276.2
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCGGAGAAAGCCGGGGATaGCCAGGGTTGTTGTTTGTA +
Preference number: 5 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSGESRG*PGLLFV
Trigger: TACAAACAACAACCCTGGCAATCCCCGGCTTTCTCC...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCCGTTTCAGACCAGCGTaGTTTGCAAACCACGACCTG +
Preference number: 5 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSRFRPA*FANHDL
Trigger: CAGGTCGTGGTTTGCAAACAACGCTGGTCTGAAACG...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GGTAGGGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTCAGTGTGCCTGTCAGTaGAGTCACCACTTTCCCAAC +
Preference number: 5 (lower is better)
Translates to: GRERRSVAIEVSWDAAAGQCACQ*SHHFPN
Trigger: GTTGGGAAAGTGGTGACTCAACTGACAGGCACACTG...ACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCCCTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS CCA 90 bp GTTGATATGACCGTGGTCTGGCCTGAGGTTTGGATGGTTTTGAAATaGAATTGTGGGCCCATCCACAGGCGCCTGTGGGGTCCGGTGTGT +
Preference number: 5 (lower is better)
Translates to: VDMTVVWPEVWMVLK*NCGPIHRRLWGPVC
Trigger: ACACACCGGACCCCACAGGCGCCTGTGGATGGGCCCACAATTCCATTTCAAAACCATCCAAACCTCAGGCCAGACCACGGTCATATCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CCA 90 bp GCACGGGATGACCCTGGCATGCTGACTGGGTCAGAGCGGACAGGCTaGATCCTGAGGCTGTTAAGATCTAGATCATCCGTATCAAAGTCC +
Preference number: 5 (lower is better)
Translates to: ARDDPGMLTGSERTG*ILRLLRSRSSVSKS
Trigger: GGACTTTGATACGGATGATCTAGATCTTAACAGCCTCAGGATCCAGCCTGTCCGCTCTGACCCAGTCAGCATGCCAGGGTCATCCCGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp CGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCGGACGCCCATTGATTTGCTaGGAGAAATTTGTGGAGGTG +
Preference number: 5 (lower is better)
Translates to: RRSVAIEVSWDAAAGGAGRPLIC*EKFVEV
Trigger: CACCTCCACAAATTTCTCCAAGCAAATCAATGGGCG...TCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CAA 90 bp CGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTGGAGCCGGAGAGGTTTGGATGGTTTaGAAATGGAATTGTGGGCCC +
Preference number: 5 (lower is better)
Translates to: RRSVAIEVSWDAAAGGAGEVWMV*KWNCGP
Trigger: GGGCCCACAATTCCATTTCAAAACCATCCAAACCTC...TCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CAA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGCACGCTTTGTTACTGTaGGGCTGTTCACGCACGCTG +
Preference number: 5 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQHALLL*GCSRTL
Trigger: CAGCGTGCGTGAACAGCCCAACAGTAACAAAGCGTG...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS TCA 90 bp CAATCTCTTCCAGCCCAGCACTTTTCTGGAAACGGCTCATGCGATTaGCTACTCGTGGTGACATGTGTGTGCGGACACAAGGCTGGCCAC +
Preference number: 5 (lower is better)
Translates to: QSLPAQHFSGNGSCD*LLVVTCVCGHKAGH
Trigger: GTGGCCAGCCTTGTGTCCGCACACACATGTCACCACGAGTAGTCAATCGCATGAGCCGTTTCCAGAAAAGTGCTGGGCTGGAAGAGATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS GCA 90 bp CCTGTTCGCTTCGTGATGGTTCCCAGTGTCATTGGCTGTTTGATTTaGGCAAGAGGCGTCACTACCATCAAGCTGGGGAGGGGAGAAAGC +
Preference number: 5 (lower is better)
Translates to: PVRFVMVPSVIGCLI*ARGVTTIKLGRGES
Trigger: GCTTTCTCCCCTCCCCAGCTTGATGGTAGTGACGCCTCTTGCGCAAATCAAACAGCCAATGACACTGGGAACCATCACGAAGCGAACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS GCA 90 bp CAAACACTTCACAGCCATGGGTCTCTCGGGGGTGCTGTTTTTGACTaGTACGTCAAGGGCTGTGTCTGTTCCAGATCCCACAACGTCTCG +
Preference number: 5 (lower is better)
Translates to: QTLHSHGSLGGAVFD*YVKGCVCSRSHNVS
Trigger: CGAGACGTTGTGGGATCTGGAACAGACACAGCCCTTGACGTAGCAGTCAAAAACAGCACCCCCGAGAGACCCATGGCTGTGAAGTGTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS GCA 90 bp ATCACACTTTTGGGCACCCAACTGTGGAGCAGGCAAGATTCTAGCTaGTCGGACTGGACCATGTCGTACAGAGAAGAGCTCCTGGGCTTC +
Preference number: 5 (lower is better)
Translates to: ITLLGTQLWSRQDSS*SDWTMSYREELLGF
Trigger: GAAGCCCAGGAGCTCTTCTCTGTACGACATGGTCCAGTCCGAGCAGCTAGAATCTTGCCTGCTCCACAGTTGGGTGCCCAAAAGTGTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS GCA 90 bp AGCAAGAATCTACTGGAAAGCAGCATGAGAGGAAAGTGTTTACCATaGAGCGGGGAGCCAGAAGGGCTGCTGGACAGGCCTGGAACAGGA +
Preference number: 5 (lower is better)
Translates to: SKNLLESSMRGKCLP*SGEPEGLLDRPGTG
Trigger: TCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCCCGCTGCATGGTAAACACTTTCCTCTCATGCTGCTTTCCAGTAGATTCTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS CCA 90 bp CTGCACTGCTTCTGCAGCGAGGAGCAGAGGGTGATTCGCATTGAATaGCGGCTGCAGTTCATTCCACTGAGGCGTTCTAACAAGTGTCCA +
Preference number: 5 (lower is better)
Translates to: LHCFCSEEQRVIRIE*RLQFIPLRRSNKCP
Trigger: TGGACACTTGTTAGAACGCCTCAGTGGAATGAACTGCAGCCGCCATTCAATGCGAATCACCCTCTGCTCCTCGCTGCAGAAGCAGTGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCCGCCCATTGATTTGCTaGGAGAAATTTGTGGAGGTG +
Preference number: 5 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSRPLIC*EKFVEV
Trigger: CACCTCCACAAATTTCTCCAAGCAAATCAATGGGCG...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTGGTTTTGAAATGGAATaGTGGGCCCATCCACAGGCG +
Preference number: 5 (lower is better)
Translates to: GLGLMSTKMPGWIFQLSPGFEME*WAHPQA
Trigger: CGCCTGTGGATGGGCCCACAATTCCATTTCAAAACC...AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCGAGGTTTGGATGGTTTaGAAATGGAATTGTGGGCCC +
Preference number: 5 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSEVWMV*KWNCGP
Trigger: GGGCCCACAATTCCATTTCAAAACCATCCAAACCTC...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAACCACAACGTCTCGGCTaGGTGACTCGGCCATGGCAT +
Preference number: 5 (lower is better)
Translates to: DEQLLPLSLGKVGLRRLKPQRLG*VTRPWH
Trigger: ATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGG...TTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCAGCGGCTGGCTCTCGTaGGTAGGGAGCGGAGATCGG +
Preference number: 5 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSSGWLS*VGSGDR
Trigger: CCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCT...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp TGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTGTTCCAGCAGTGTGCCTGTCAGTaGAGTCACCACTTTCCCAAC +
Preference number: 5 (lower is better)
Translates to: WIFQLSPTRGPKIWPLFQQCACQ*SHHFPN
Trigger: GTTGGGAAAGTGGTGACTCAACTGACAGGCACACTG...CTGGAACAGGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GAAGAGGCTGAGCGGCTGGCTCTCGTTGGTAGGGAGCGGAGATCGGTAGCCATCAGGATGAGTCAGGATTaGGAAGACATGAAAGTCATG +
Preference number: 5 (lower is better)
Translates to: EEAERLALVGRERRSVAIRMSQD*EDMKVM
Trigger: CATGACTTTCATGTCTTCCAAATCCTGACTCATCCT...GATGGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS TCA 90 bp TCATTATCTCCAGTGGTGTGTCGTCACTTATCTTGGGAGCAGTACTaGTCGGCCGGGGCTCAATCATGTGCTCCACTAAGGTCCCGTAGC +
Preference number: 5 (lower is better)
Translates to: SLSPVVCRHLSWEQY*SAGAQSCAPLRSRS
Trigger: GCTACGGGACCTTAGTGGAGCACATGATTGAGCCCCGGCCGATCAGTACTGCTCCCAAGATAAGTGACGACACACCACTGGAGATAATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTCACCGCCCATTGATTaGCTTGGAGAAATTTGTGGA +
Preference number: 5 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPSPPID*LGEICG
Trigger: TCCACAAATTTCTCCAAGCAAATCAATGGGCGGTGA...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp TGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGCGTTTCAGACCAGCGTaGTTTGCAAACCACGACCTG +
Preference number: 5 (lower is better)
Translates to: WDEQLLPLSLGKVGLRRLRFRPA*FANHDL
Trigger: CAGGTCGTGGTTTGCAAACAACGCTGGTCTGAAACG...CAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp TGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGGTGTCGTCACTTATCTaGGGAGCAGTACTGATCGGC +
Preference number: 5 (lower is better)
Translates to: WDEQLLPLSLGKVGLRRLVSSLI*GAVLIG
Trigger: GCCGATCAGTACTGCTCCCAAGATAAGTGACGACAC...CAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp TGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGGGTTTTGAAATGGAATaGTGGGCCCATCCACAGGCG +
Preference number: 5 (lower is better)
Translates to: WDEQLLPLSLGKVGLRRLGFEME*WAHPQA
Trigger: CGCCTGTGGATGGGCCCACAATTCCATTTCAAAACC...CAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp CAATTGCAGCGAGATTTATTGGACAAGACGTGCACTTTTGACACGGCCTCGGTACCACAACGTCTCGGCTaGGTGACTCGGCCATGGCAT +
Preference number: 5 (lower is better)
Translates to: QLQRDLLDKTCTFDTASVPQRLG*VTRPWH
Trigger: ATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGG...TACCGAGGCCGTGTCAAAAGTGCACGTCTTGTCCAATAAATCTCGCTGCAATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp CCTGGAGGACTGAAATGTCATAGCCAGACTGGGGTCACCTTGGCTGGGGATGCTCAATGGGATTCATGTTaGGCCCAGGACAAGGATAAC +
Preference number: 5 (lower is better)
Translates to: PGGLKCHSQTGVTLAGDAQWDSC*AQDKDN
Trigger: GTTATCCTTGTCCTGGGCCAAACATGAATCCCATTG...AGCATCCCCAGCCAAGGTGACCCCAGTCTGGCTATGACATTTCAGTCCTCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CAA 90 bp GATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAAGGGCTCCGTCTTGAGTaGCAGTGTAGGGCAACGTCA +
Preference number: 5 (lower is better)
Translates to: DEQLLPLSLGKVGLRRLKGLRLE*QCRATS
Trigger: TGACGTTGCCCTACACTGCAACTCAAGACGGAGCCC...TTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTAAACGGCTCATGCGATaGACTACTCGTGGTGACATG +
Preference number: 5 (lower is better)
Translates to: GLGLMSTKMPGWIFQLSPKRLMR*TTRGDM
Trigger: CATGTCACCACGAGTAGTCAATCGCATGAGCCGTTT...AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp ATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCTTAGATGTCAGCTCTaGTTCAATCTCTTCCAGCCC +
Preference number: 5 (lower is better)
Translates to: MPGWIFQLSPTRGPKIWPLRCQL*FNLFQP
Trigger: GGGCTGGAAGAGATTGAACAAGAGCTGACATCTAAG...GGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS TCA 90 bp TTCATTCCACTGAGGCGTTCTAACAAGTGTCCAGCTGGCACGGGGTaGCGTCATTATCTCCAGTGGTGTGTCGTCACTTATCTTGGGAGC +
Preference number: 5 (lower is better)
Translates to: FIPLRRSNKCPAGTG*RHYLQWCVVTYLGS
Trigger: GCTCCCAAGATAAGTGACGACACACCACTGGAGATAATGACGTCACCCCGTGCCAGCTGGACACTTGTTAGAACGCCTCAGTGGAATGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS TCA 90 bp CCCAGCACTTTTCTGGAAACGGCTCATGCGATTGACTACTCGTGGTaGCATGTGTGTGCGGACACAAGGCTGGCCACCATAAGGATTGAT +
Preference number: 5 (lower is better)
Translates to: PSTFLETAHAIDYSW*HVCADTRLATIRID
Trigger: ATCAATCCTTATGGTGGCCAGCCTTGTGTCCGCACACACATGTCACCACGAGTAGTCAATCGCATGAGCCGTTTCCAGAAAAGTGCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS CCA 90 bp TGGATGGTTTTGAAATGGAATTGTGGGCCCATCCACAGGCGCCTGTaGGGTCCGGTGTGTGTCACAATTTCAACCTGGGAAAGCCATTCT +
Preference number: 5 (lower is better)
Translates to: WMVLKWNCGPIHRRL*GPVCVTISTWESHS
Trigger: AGAATGGCTTTCCCAGGTTGAAATTGTGACACACACCGGACCCCACAGGCGCCTGTGGATGGGCCCACAATTCCATTTCAAAACCATCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp AAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGGGAGAAAGCCGGGGATaGCCAGGGTTGTTGTTTGTA +
Preference number: 5 (lower is better)
Translates to: KMPGWIFQLSPTRGPKIWGESRG*PGLLFV
Trigger: TACAAACAACAACCCTGGCAATCCCCGGCTTTCTCC...CCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTGAGGTTTGGATGGTTTaGAAATGGAATTGTGGGCCC +
Preference number: 5 (lower is better)
Translates to: GLGLMSTKMPGWIFQLSPEVWMV*KWNCGP
Trigger: GGGCCCACAATTCCATTTCAAAACCATCCAAACCTC...AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp AACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGACAAATCTCTCCCCACAACGTCTCGGCTaGGTGACTCGGCCATGGCAT +
Preference number: 5 (lower is better)
Translates to: NSTGPGDKGLKIRQTNLSPQRLG*VTRPWH
Trigger: ATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGG...GGAGAGATTTGTCTGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp ACAGGAAGGGGCAGGGCAGAGTCTAAGGTGGAAAGCACAAACTCAAAGTTAGCCCAGTGTGCCTGTCAGTaGAGTCACCACTTTCCCAAC +
Preference number: 5 (lower is better)
Translates to: TGRGRAESKVESTNSKLAQCACQ*SHHFPN
Trigger: GTTGGGAAAGTGGTGACTCAACTGACAGGCACACTG...GGCTAACTTTGAGTTTGTGCTTTCCACCTTAGACTCTGCCCTGCCCCTTCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CAA 90 bp AGTAACCAACAGCCAGTGGCAGCATGTCTGCATACAGAAACGAGGGAGCTGCTGAAACGGCTCATGCGATaGACTACTCGTGGTGACATG +
Preference number: 5 (lower is better)
Translates to: SNQQPVAACLHTETRELLKRLMR*TTRGDM
Trigger: CATGTCACCACGAGTAGTCAATCGCATGAGCCGTTT...CAGCAGCTCCCTCGTTTCTGTATGCAGACATGCTGCCACTGGCTGTTGGTTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CAA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGAAACGGCTCATGCGATaGACTACTCGTGGTGACATG +
Preference number: 5 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRKRLMR*TTRGDM
Trigger: CATGTCACCACGAGTAGTCAATCGCATGAGCCGTTT...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp AGGAGTGGGGGAGGTCAGGGTGTACCGAGGTGTTCTGAAGGTCTCTTCTCGTCCGGAGGTGATTTAACTTaGCATGGAGCCTTTATGGAA +
Preference number: 5 (lower is better)
Translates to: RSGGGQGVPRCSEGLFSSGGDLT*HGAFME
Trigger: TTCCATAAAGGCTCCATGCAAAGTTAAATCACCTCC...GGACGAGAAGAGACCTTCAGAACACCTCGGTACACCCTGACCTCCCCCACTCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR CAA 90 bp TGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGATCTGGCCCCGGAGGTGATTTAACTTaGCATGGAGCCTTTATGGAA +
Preference number: 5 (lower is better)
Translates to: CLAGSFNSPLPEALRSGPGGDLT*HGAFME
Trigger: TTCCATAAAGGCTCCATGCAAAGTTAAATCACCTCC...GGGGCCAGATCTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS CCA 90 bp GTATTAAAAGCCATACAGCATACTGGCTTCTCATGGGCAGGGAAGTaGGCCACAATGCCATCACTGTCCGAGTCCTCACTTACAAGCACC +
Preference number: 5 (lower is better)
Translates to: VLKAIQHTGFSWAGK*ATMPSLSESSLTST
Trigger: GGTGCTTGTAAGTGAGGACTCGGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTATGCTGTATGGCTTTTAATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000144276.2
ENSMUST00000154396.8
CDS CCA 90 bp AAAGAGATAAGGCCCTGTTCGCTTCGTGATGGTTCCCAGTGTCATTaGCTGTTTGATTTGCGCAAGAGGCGTCACTACCATCAAGCTGGG +
Preference number: 5 (lower is better)
Translates to: KEIRPCSLRDGSQCH*LFDLRKRRHYHQAG
Trigger: CCCAGCTTGATGGTAGTGACGCCTCTTGCGCAAATCAAACAGCCAATGACACTGGGAACCATCACGAAGCGAACAGGGCCTTATCTCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074875.11
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR CAA 90 bp CGTCCAGTTTGGGATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGCGCCCATTGATTTGCTaGGAGAAATTTGTGGAGGTG +
Preference number: 5 (lower is better)
Translates to: RPVWDEQLLPLSLGKVGLRPLIC*EKFVEV
Trigger: CACCTCCACAAATTTCTCCAAGCAAATCAATGGGCG...CAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATCCCAAACTGGACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GGGCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTTCACCGCCCATTGATTaGCTTGGAGAAATTTGTGGA +
Preference number: 5 (lower is better)
Translates to: GLGLMSTKMPGWIFQLSPSPPID*LGEICG
Trigger: TCCACAAATTTCTCCAAGCAAATCAATGGGCGGTGA...AGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAAGTGTCGTCACTTATCTaGGGAGCAGTACTGATCGGC +
Preference number: 5 (lower is better)
Translates to: DEQLLPLSLGKVGLRRLKVSSLI*GAVLIG
Trigger: GCCGATCAGTACTGCTCCCAAGATAAGTGACGACAC...TTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACGAGGTTTGGATGGTTTaGAAATGGAATTGTGGGCCC +
Preference number: 5 (lower is better)
Translates to: ARADVHQNAWLDLSTLPYEVWMV*KWNCGP
Trigger: GGGCCCACAATTCCATTTCAAAACCATCCAAACCTC...GTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GCTAGGGCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAATGGGATTCATGTTaGGCCCAGGACAAGGATAAC +
Preference number: 5 (lower is better)
Translates to: ARADVHQNAWLDLSTLPYQWDSC*AQDKDN
Trigger: GTTATCCTTGTCCTGGGCCAAACATGAATCCCATTG...GTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGCCCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCAATGGGATTCATGTTaGGCCCAGGACAAGGATAAC +
Preference number: 5 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRQWDSC*AQDKDN
Trigger: GTTATCCTTGTCCTGGGCCAAACATGAATCCCATTG...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp TCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGCCCTAAGCTTAGATGTCAGCTCTaGTTCAATCTCTTCCAGCCC +
Preference number: 5 (lower is better)
Translates to: STKMPGWIFQLSPTRGPKLRCQL*FNLFQP
Trigger: GGGCTGGAAGAGATTGAACAAGAGCTGACATCTAAG...CTTAGGGCCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS CCA 90 bp AACACAGAAGAACTAGTTGATATGACCGTGGTCTGGCCTGAGGTTTaGATGGTTTTGAAATGGAATTGTGGGCCCATCCACAGGCGCCTG +
Preference number: 5 (lower is better)
Translates to: NTEELVDMTVVWPEV*MVLKWNCGPIHRRL
Trigger: CAGGCGCCTGTGGATGGGCCCACAATTCCATTTCAAAACCATCCAAACCTCAGGCCAGACCACGGTCATATCAACTAGTTCTTCTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GCTGATGTCCACCAAAATGCCTGGCTGGATCTTTCAACTCTCCCCTACCAGAGGTCACCGCCCATTGATTaGCTTGGAGAAATTTGTGGA +
Preference number: 5 (lower is better)
Translates to: ADVHQNAWLDLSTLPYQRSPPID*LGEICG
Trigger: TCCACAAATTTCTCCAAGCAAATCAATGGGCGGTGA...CCTCTGGTAGGGGAGAGTTGAAAGATCCAGCCAGGCATTTTGGTGGACATCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGAGTGTCGTCACTTATCTaGGGAGCAGTACTGATCGGC +
Preference number: 5 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRVSSLI*GAVLIG
Trigger: GCCGATCAGTACTGCTCCCAAGATAAGTGACGACAC...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAGGTTTTGAAATGGAATaGTGGGCCCATCCACAGGCG +
Preference number: 5 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTGFEME*WAHPQA
Trigger: CGCCTGTGGATGGGCCCACAATTCCATTTCAAAACC...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp TGCACTTTTGACACGGCCTCGGTAACTGCACTTCCCTTCATGGAACAGTACAGGCTTAGATGTCAGCTCTaGTTCAATCTCTTCCAGCCC +
Preference number: 5 (lower is better)
Translates to: CTFDTASVTALPFMEQYRLRCQL*FNLFQP
Trigger: GGGCTGGAAGAGATTGAACAAGAGCTGACATCTAAG...CCTGTACTGTTCCATGAAGGGAAGTGCAGTTACCGAGGCCGTGTCAAAAGTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGTCTCGAACGCACGCTTaGTTACTGTTGGGCTGTTCA +
Preference number: 5 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKSRTHA*LLLGCS
Trigger: TGAACAGCCCAACAGTAACAAAGCGTGCGTTCGAGA...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS-3UTR CAA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGAAGTGTCATTGGCTGTTaGATTTGCGCAAGAGGCGTC +
Preference number: 5 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRSVIGC*ICARGV
Trigger: GACGCCTCTTGCGCAAATCAAACAGCCAATGACACT...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGCGCCCATTGATTTGCTaGGAGAAATTTGTGGAGGTG +
Preference number: 5 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKRPLIC*EKFVEV
Trigger: CACCTCCACAAATTTCTCCAAGCAAATCAATGGGCG...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAACAATGGGATTCATGTTaGGCCCAGGACAAGGATAAC +
Preference number: 5 (lower is better)
Translates to: DEQLLPLSLGKVGLRRLKQWDSC*AQDKDN
Trigger: GTTATCCTTGTCCTGGGCCAAACATGAATCCCATTG...TTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp CTACTAAGGAGACCATGCAACTCTCCAGAAAATAAGTATCAACGCATGAAGTCCGGGCTCCGTCTTGAGTaGCAGTGTAGGGCAACGTCA +
Preference number: 5 (lower is better)
Translates to: LLRRPCNSPENKYQRMKSGLRLE*QCRATS
Trigger: TGACGTTGCCCTACACTGCAACTCAAGACGGAGCCC...GGACTTCATGCGTTGATACTTATTTTCTGGAGAGTTGCATGGTCTCCTTAGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CAA 90 bp CTCTGTGAGTTCAAGAACAGGCTGATCTATAGAGTAAGTTCCAGAACAGCCAAAGGGCTCCGTCTTGAGTaGCAGTGTAGGGCAACGTCA +
Preference number: 5 (lower is better)
Translates to: LCEFKNRLIYRVSSRTAKGLRLE*QCRATS
Trigger: TGACGTTGCCCTACACTGCAACTCAAGACGGAGCCC...TTTGGCTGTTCTGGAACTTACTCTATAGATCAGCCTGTTCTTGAACTCACAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144276.2
CDS-3UTR CAA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGATCTCGAACGCACGCTTaGTTACTGTTGGGCTGTTCA +
Preference number: 5 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRSRTHA*LLLGCS
Trigger: TGAACAGCCCAACAGTAACAAAGCGTGCGTTCGAGA...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS CCA 90 bp TTAGATGTCAGCTCTTGTTCAATCTCTTCCAGCCCAGCACTTTTCTaGAAACGGCTCATGCGATTGACTACTCGTGGTGACATGTGTGTG +
Preference number: 5 (lower is better)
Translates to: LDVSSCSISSSPALF*KRLMRLTTRGDMCV
Trigger: CACACACATGTCACCACGAGTAGTCAATCGCATGAGCCGTTTCCAGAAAAGTGCTGGGCTGGAAGAGATTGAACAAGAGCTGACATCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp GATGAACAGCTGTTGCCACTAAGCTTAGGGAAGGTGGGGTTGAGGAGACTGAAATCACCGCCCATTGATTaGCTTGGAGAAATTTGTGGA +
Preference number: 5 (lower is better)
Translates to: DEQLLPLSLGKVGLRRLKSPPID*LGEICG
Trigger: TCCACAAATTTCTCCAAGCAAATCAATGGGCGGTGA...TTTCAGTCTCCTCAACCCCACCTTCCCTAAGCTTAGTGGCAACAGCTGTTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp TGTGAGTTCAAGAACAGGCTGATCTATAGAGTAAGTTCCAGAACAGCCAAAGCACAGTGTGCCTGTCAGTaGAGTCACCACTTTCCCAAC +
Preference number: 5 (lower is better)
Translates to: CEFKNRLIYRVSSRTAKAQCACQ*SHHFPN
Trigger: GTTGGGAAAGTGGTGACTCAACTGACAGGCACACTG...TGCTTTGGCTGTTCTGGAACTTACTCTATAGATCAGCCTGTTCTTGAACTCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144276.2
CDS-3UTR CAA 90 bp CGGGCACTACTAAGGAGACCATGCAACTCTCCAGAAAATAAGTATCAACGCATGCTTAGATGTCAGCTCTaGTTCAATCTCTTCCAGCCC +
Preference number: 5 (lower is better)
Translates to: RALLRRPCNSPENKYQRMLRCQL*FNLFQP
Trigger: GGGCTGGAAGAGATTGAACAAGAGCTGACATCTAAG...CATGCGTTGATACTTATTTTCTGGAGAGTTGCATGGTCTCCTTAGTAGTGCCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CAA 90 bp GCACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGGGAGGTGATTTAACTTaGCATGGAGCCTTTATGGAA +
Preference number: 5 (lower is better)
Translates to: ALPFMEQYRTRGQGLKDKGGDLT*HGAFME
Trigger: TTCCATAAAGGCTCCATGCAAAGTTAAATCACCTCC...CTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS-3UTR CAA 90 bp CACTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGAAGGATGAGTCAGGATTaGGAAGACATGAAAGTCATG +
Preference number: 5 (lower is better)
Translates to: HFPSWNSTGPGDKGLKIRRMSQD*EDMKVM
Trigger: CATGACTTTCATGTCTTCCAAATCCTGACTCATCCT...TCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS-3UTR CAA 90 bp CTTCCCTTCATGGAACAGTACAGGACCAGGGGACAAGGGCTTAAAGATAAGACAAGGATGAGTCAGGATTaGGAAGACATGAAAGTCATG +
Preference number: 5 (lower is better)
Translates to: LPFMEQYRTRGQGLKDKTRMSQD*EDMKVM
Trigger: CATGACTTTCATGTCTTCCAAATCCTGACTCATCCT...TGTCTTATCTTTAAGCCCTTGTCCCCTGGTCCTGTACTGTTCCATGAAGGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS TCA 90 bp ATTCTAGATTCCGTGATGTGTCGTTCAGATCTGCATTCTCAAATCTaGCCCAGACTATCTTCTCCTTTTCTTCTGTTAGGGGAGACCCAC +
Preference number: 5 (lower is better)
Translates to: ILDSVMCRSDLHSQI*PRLSSPFLLLGETH
Trigger: GTGGGTCTCCCCTAACAGAAGAAAAGGAGAAGATAGTCTGGGTCAGATTTGAGAATGCAGATCTGAACGACACATCACGGAATCTAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000138423.8
CDS-3UTR CAA 90 bp CGGGCACTACTAAGGAGACCATGCAACTCTCCAGAAAATAAGTATCAACGCATGAGGATGAGTCAGGATTaGGAAGACATGAAAGTCATG +
Preference number: 5 (lower is better)
Translates to: RALLRRPCNSPENKYQRMRMSQD*EDMKVM
Trigger: CATGACTTTCATGTCTTCCAAATCCTGACTCATCCT...CATGCGTTGATACTTATTTTCTGGAGAGTTGCATGGTCTCCTTAGTAGTGCCCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS-3UTR CAA 90 bp CTCTGTGAGTTCAAGAACAGGCTGATCTATAGAGTAAGTTCCAGAACAGCCAAAAGGATGAGTCAGGATTaGGAAGACATGAAAGTCATG +
Preference number: 5 (lower is better)
Translates to: LCEFKNRLIYRVSSRTAKRMSQD*EDMKVM
Trigger: CATGACTTTCATGTCTTCCAAATCCTGACTCATCCT...TTTGGCTGTTCTGGAACTTACTCTATAGATCAGCCTGTTCTTGAACTCACAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144276.2
CDS GCA 72 bp CGGAGGCCCTCCTCTGAGTGCTCCATGGAGGACATATaGCGCAGCCCGAAGCCCTCAGGCCAGCTCCCACAC +
Preference number: 6 (lower is better)
Translates to: RRPSSECSMEDI*RSPKPSGQLPH
Trigger: GTGTGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCATATGTCCTCCATGGAGCACTCAGAGGAGGGCCTCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS GCA 72 bp TGGTCAGCTTCCCATGCAGCGGGGAGCCAGAAGGGCTaGTGGACAGGCCTGGAACAGGACTACAGCGGCCGC +
Preference number: 6 (lower is better)
Translates to: WSASHAAGSQKG*WTGLEQDYSGR
Trigger: GCGGCCGCTGTAGTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCCCGCTGCATGGGAAGCTGACCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CCA 72 bp CAAGCCGTTCCCGGAGGCCCTCCTCTGAGTGCTCCATaGAGGACATATGCCGCAGCCCGAAGCCCTCAGGCC +
Preference number: 6 (lower is better)
Translates to: QAVPGGPPLSAP*RTYAAARSPQA
Trigger: GGCCTGAGGGCTTCGGGCTGCGGCATATGTCCTCCATGGAGCACTCAGAGGAGGGCCTCCGGGAACGGCTTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000149662.2
ENSMUST00000154396.8
CDS GCA 72 bp GCATCTGCAAGCCGTTCCCGGAGGCCCTCCTCTGAGTaGTCCATGGAGGACATATGCCGCAGCCCGAAGCCC +
Preference number: 6 (lower is better)
Translates to: ASASRSRRPSSE*SMEDICRSPKP
Trigger: GGGCTTCGGGCTGCGGCATATGTCCTCCATGGAGCACTCAGAGGAGGGCCTCCGGGAACGGCTTGCAGATGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000149662.2
ENSMUST00000154396.8
CDS CCA 72 bp TCAGCTTCCCATGCAGCGGGGAGCCAGAAGGGCTGCTaGACAGGCCTGGAACAGGACTACAGCGGCCGCCTT +
Preference number: 6 (lower is better)
Translates to: SASHAAGSQKGC*TGLEQDYSGRL
Trigger: AAGGCGGCCGCTGTAGTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCCCGCTGCATGGGAAGCTGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CCA 72 bp CAGATCCCACAACGTCTCGGCTTGGTGACTCGGCCATaGCATCTGCAAGCCGTTCCCGGAGGCCCTCCTCTG +
Preference number: 6 (lower is better)
Translates to: QIPQRLGLVTRP*HLQAVPGGPPL
Trigger: CAGAGGAGGGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000149662.2
ENSMUST00000154396.8
CDS TCA 72 bp CATGGCATCTGCAAGCCGTTCCCGGAGGCCCTCCTCTaGGTGCTCCATGGAGGACATATGCCGCAGCCCGAA +
Preference number: 6 (lower is better)
Translates to: HGICKPFPEALL*VLHGGHMPQPE
Trigger: TTCGGGCTGCGGCATATGTCCTCCATGGAGCACTCAGAGGAGGGCCTCCGGGAACGGCTTGCAGATGCCATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000149662.2
ENSMUST00000154396.8
CDS TCA 72 bp GAAAAGTCACGACGCTCTCCATGTAGGACTGCTCCGTaGCGGCCTGAGGGCGGACCACGACTCCGCCAGTAC +
Preference number: 6 (lower is better)
Translates to: EKSRRSPCRTAP*RPEGGPRLRQY
Trigger: GTACTGGCGGAGTCGTGGTCCGCCCTCAGGCCGTCACGGAGCAGTCCTACATGGAGAGCGTCGTGACTTTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000138423.8
CDS GCA 72 bp GAAAGTGTTTACCATGCAGCGGGGAGCCAGAAGGGCTaGTGGACAGGCCTGGAACAGGACTACAGCGGCCGC +
Preference number: 6 (lower is better)
Translates to: ESVYHAAGSQKG*WTGLEQDYSGR
Trigger: GCGGCCGCTGTAGTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCCCGCTGCATGGTAAACACTTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS CCA 72 bp GCTCGGACTGGACCATGTCGTACAGAGAAGAGCTCCTaGGCTTCCCCGCTGATAGGGATGCCCCAGACCTGC +
Preference number: 6 (lower is better)
Translates to: ARTGPCRTEKSS*ASPLIGMPQTC
Trigger: GCAGGTCTGGGGCATCCCTATCAGCGGGGAAGCCCAGGAGCTCTTCTCTGTACGACATGGTCCAGTCCGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS CCA 72 bp ATGCAGCGGGGAGCCAGAAGGGCTGCTGGACAGGCCTaGAACAGGACTACAGCGGCCGCCTTGCTTAGATGT +
Preference number: 6 (lower is better)
Translates to: MQRGARRAAGQA*NRTTAAALLRC
Trigger: ACATCTAAGCAAGGCGGCCGCTGTAGTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCCCGCTGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS CCA 72 bp AGTGTTTACCATGCAGCGGGGAGCCAGAAGGGCTGCTaGACAGGCCTGGAACAGGACTACAGCGGCCGCCTT +
Preference number: 6 (lower is better)
Translates to: SVYHAAGSQKGC*TGLEQDYSGRL
Trigger: AAGGCGGCCGCTGTAGTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCTGGCTCCCCGCTGCATGGTAAACACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS CAA 90 bp CTACGTCAAGGGCTGTGTCTGTTCCAGATCCCACAACGTCTCGGCTaGGTGACTCGGCCATGGCATCTGCAAGCCGTTCCCGGAGGCCCT +
Preference number: 6 (lower is better)
Translates to: LRQGLCLFQIPQRLG*VTRPWHLQAVPGGP
Trigger: AGGGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTGGAACAGACACAGCCCTTGACGTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS CAA 72 bp GGGCTGTGTCTGTTCCAGATCCCACAACGTCTCGGCTaGGTGACTCGGCCATGGCATCTGCAAGCCGTTCCC +
Preference number: 6 (lower is better)
Translates to: GLCLFQIPQRLG*VTRPWHLQAVP
Trigger: GGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTGGAACAGACACAGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS CAA 90 bp TTCCCTCTCGCTGAAGTTCTGTTCCAGATCCCACAACGTCTCGGCTaGGTGACTCGGCCATGGCATCTGCAAGCCGTTCCCGGAGGCCCT +
Preference number: 6 (lower is better)
Translates to: FPLAEVLFQIPQRLG*VTRPWHLQAVPGGP
Trigger: AGGGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTGGAACAGAACTTCAGCGAGAGGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000154396.8
CDS TCA 72 bp TGTGTCTGTTCCAGATCCCACAACGTCTCGGCTTGGTaGCTCGGCCATGGCATCTGCAAGCCGTTCCCGGAG +
Preference number: 6 (lower is better)
Translates to: CVCSRSHNVSAW*LGHGICKPFPE
Trigger: CTCCGGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTGGAACAGACACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS TCA 72 bp TTTCCCTGTTCCAGATCCCACAACGTCTCGGCTTGGTaGCTCGGCCATGGCATCTGCAAGCCGTTCCCGGAG +
Preference number: 6 (lower is better)
Translates to: FPCSRSHNVSAW*LGHGICKPFPE
Trigger: CTCCGGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTGGAACAGGGAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149662.2
CDS GCA 72 bp GGAGCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATaGTGCCGCTGGTGGAGCCGGAGCTGTTACTCAGAG +
Preference number: 6 (lower is better)
Translates to: GAEIGSHRSFLG*CRWWSRSCYSE
Trigger: CTCTGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CCA 72 bp GGTAGGGAGCGGAGATCGGTAGCCATCGAAGTTTCTTaGGATGCTGCCGCTGGTGGAGCCGGAGCTGTTACT +
Preference number: 6 (lower is better)
Translates to: GRERRSVAIEVS*DAAAGGAGAVT
Trigger: AGTAACAGCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGCTCCCTACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS TCA 72 bp AAGTTCTGTTCCAGATCCCACAACGTCTCGGCTTGGTaGCTCGGCCATGGCATCTGCAAGCCGTTCCCGGAG +
Preference number: 6 (lower is better)
Translates to: KFCSRSHNVSAW*LGHGICKPFPE
Trigger: CTCCGGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTGGAACAGAACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000154396.8
CDS GCA 72 bp GCCGGCCAGCAGGAGCTGGTAATACTGCACTGCTTCTaGAGCGAGGAGCAGAGGGTGATTCGCATTGAATGG +
Preference number: 6 (lower is better)
Translates to: AGQQELVILHCF*SEEQRVIRIEW
Trigger: CCATTCAATGCGAATCACCCTCTGCTCCTCGCTGCAGAAGCAGTGCAGTATTACCAGCTCCTGCTGGCCGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS GCA 72 bp GCGGAGATCGGTAGCCATCGAAGTTTCTTGGGATGCTaGCGCTGGTGGAGCCGGAGCTGTTACTCAGAGTCT +
Preference number: 6 (lower is better)
Translates to: AEIGSHRSFLGC*RWWSRSCYSES
Trigger: AGACTCTGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGATCTCCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CCA 72 bp TCCGGTCAAAGGTACCTGAGGCAGCATCGGTCACTGTaGAAACTCCCCTCCGATCAGAGACAGCACGGGATG +
Preference number: 6 (lower is better)
Translates to: SGQRYLRQHRSL*KLPSDQRQHGM
Trigger: CATCCCGTGCTGTCTCTGATCGGAGGGGAGTTTCCACAGTGACCGATGCTGCCTCAGGTACCTTTGACCGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CAA 72 bp GCTGAAGTTCTGTTCCAGATCCCACAACGTCTCGGCTaGGTGACTCGGCCATGGCATCTGCAAGCCGTTCCC +
Preference number: 6 (lower is better)
Translates to: AEVLFQIPQRLG*VTRPWHLQAVP
Trigger: GGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTGGAACAGAACTTCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000154396.8
CDS TCA 72 bp CTGCTTCTGCAGCGAGGAGCAGAGGGTGATTCGCATTaGATGGCGGCTGCAGTTCATTCCACTGAGGCGTTC +
Preference number: 6 (lower is better)
Translates to: LLLQRGAEGDSH*MAAAVHSTEAF
Trigger: GAACGCCTCAGTGGAATGAACTGCAGCCGCCATTCAATGCGAATCACCCTCTGCTCCTCGCTGCAGAAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS GCA 72 bp AAGAGAGCCGGCCAGCAGGAGCTGGTAATACTGCACTaGTTCTGCAGCGAGGAGCAGAGGGTGATTCGCATT +
Preference number: 6 (lower is better)
Translates to: KRAGQQELVILH*FCSEEQRVIRI
Trigger: AATGCGAATCACCCTCTGCTCCTCGCTGCAGAAGCAGTGCAGTATTACCAGCTCCTGCTGGCCGGCTCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS GCA 72 bp CACAGCCATGGGTCTCTCGGGGGTGCTGTTTTTGACTaGTACGTCAAGGGCTGTGTCTGTTCCAGATCCCAC +
Preference number: 6 (lower is better)
Translates to: HSHGSLGGAVFD*YVKGCVCSRSH
Trigger: GTGGGATCTGGAACAGACACAGCCCTTGACGTAGCAGTCAAAAACAGCACCCCCGAGAGACCCATGGCTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS GCA 72 bp CGCTGGTGGAGCCGGAGCTGTTACTCAGAGTCTCGATaGTTCCCTCTCGCTGAAGTTCTGTTCCAGATCCCA +
Preference number: 6 (lower is better)
Translates to: RWWSRSCYSESR*FPLAEVLFQIP
Trigger: TGGGATCTGGAACAGAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCCGGCTCCACCAGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000154396.8
CDS CCA 72 bp ACCGTGGTCTGGCCTGAGGTTTGGATGGTTTTGAAATaGAATTGTGGGCCCATCCACAGGCGCCTGTGGGGT +
Preference number: 6 (lower is better)
Translates to: TVVWPEVWMVLK*NCGPIHRRLWG
Trigger: ACCCCACAGGCGCCTGTGGATGGGCCCACAATTCCATTTCAAAACCATCCAAACCTCAGGCCAGACCACGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CCA 72 bp GGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTGGTaGAGCCGGAGCTGTTACTCAGAGTCTCGATGCTTC +
Preference number: 6 (lower is better)
Translates to: GSHRSFLGCCRW*SRSCYSESRCF
Trigger: GAAGCATCGAGACTCTGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CCA 72 bp ATCGGTAGCCATCGAAGTTTCTTGGGATGCTGCCGCTaGTGGAGCCGGAGCTGTTACTCAGAGTCTCGATGC +
Preference number: 6 (lower is better)
Translates to: IGSHRSFLGCCR*WSRSCYSESRC
Trigger: GCATCGAGACTCTGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATCCCAAGAAACTTCGATGGCTACCGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CAA 72 bp CTCGCTGAAGTTCTTCCTCCGTCTCGAACGCACGCTTaGTTACTGTTGGGCTGTTCACGCACGCTGGGCTGT +
Preference number: 6 (lower is better)
Translates to: LAEVLPPSRTHA*LLLGCSRTLGC
Trigger: ACAGCCCAGCGTGCGTGAACAGCCCAACAGTAACAAAGCGTGCGTTCGAGACGGAGGAAGAACTTCAGCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS CAA 90 bp GCACGGGGTGACGTCATTATCTCCAGTGGTGTGTCGTCACTTATCTaGGGAGCAGTACTGATCGGCCGGGGCTCAATCATGTGCTCCACT +
Preference number: 6 (lower is better)
Translates to: ARGDVIISSGVSSLI*GAVLIGRGSIMCST
Trigger: AGTGGAGCACATGATTGAGCCCCGGCCGATCAGTACTGCTCCCAAGATAAGTGACGACACACCACTGGAGATAATGACGTCACCCCGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS TCA 72 bp CCAGTGGTGTGTCGTCACTTATCTTGGGAGCAGTACTaGTCGGCCGGGGCTCAATCATGTGCTCCACTAAGG +
Preference number: 6 (lower is better)
Translates to: PVVCRHLSWEQY*SAGAQSCAPLR
Trigger: CCTTAGTGGAGCACATGATTGAGCCCCGGCCGATCAGTACTGCTCCCAAGATAAGTGACGACACACCACTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS GCA 72 bp CGCTGGTGGAGCCGGAGCTGTTACTCAGAGTCTCGATaGTTCCCTCTCGCTGAAGTTCCAAACACTTCACAG +
Preference number: 6 (lower is better)
Translates to: RWWSRSCYSESR*FPLAEVPNTSQ
Trigger: CTGTGAAGTGTTTGGAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCCGGCTCCACCAGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
CDS GCA 72 bp TTGGGCACCCAACTGTGGAGCAGGCAAGATTCTAGCTaGTCGGACTGGACCATGTCGTACAGAGAAGAGCTC +
Preference number: 6 (lower is better)
Translates to: LGTQLWSRQDSS*SDWTMSYREEL
Trigger: GAGCTCTTCTCTGTACGACATGGTCCAGTCCGAGCAGCTAGAATCTTGCCTGCTCCACAGTTGGGTGCCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS CCA 72 bp GACCCTGGCATGCTGACTGGGTCAGAGCGGACAGGCTaGATCCTGAGGCTGTTAAGATCTAGATCATCCGTA +
Preference number: 6 (lower is better)
Translates to: DPGMLTGSERTG*ILRLLRSRSSV
Trigger: TACGGATGATCTAGATCTTAACAGCCTCAGGATCCAGCCTGTCCGCTCTGACCCAGTCAGCATGCCAGGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CCA 72 bp CAACTGTGGAGCAGGCAAGATTCTAGCTGCTCGGACTaGACCATGTCGTACAGAGAAGAGCTCCTGGGCTTC +
Preference number: 6 (lower is better)
Translates to: QLWSRQDSSCSD*TMSYREELLGF
Trigger: GAAGCCCAGGAGCTCTTCTCTGTACGACATGGTCCAGTCCGAGCAGCTAGAATCTTGCCTGCTCCACAGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS CAA 72 bp GTGATGATGCCTGGAACCAAGGGGCTCCGTCTTGAGTaGCAGTGTAGGGCAACGTCATCTTCTGTCACCCCT +
Preference number: 6 (lower is better)
Translates to: VMMPGTKGLRLE*QCRATSSSVTP
Trigger: AGGGGTGACAGAAGATGACGTTGCCCTACACTGCAACTCAAGACGGAGCCCCTTGGTTCCAGGCATCATCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000144276.2
ENSMUST00000154396.8
CDS CAA 72 bp GCTGGACAGGCCTGGAACAGGACTACAGCGGCCGCCTaGCTTAGATGTCAGCTCTTGTTCAATCTCTTCCAG +
Preference number: 6 (lower is better)
Translates to: AGQAWNRTTAAA*LRCQLLFNLFQ
Trigger: CTGGAAGAGATTGAACAAGAGCTGACATCTAAGCAAGGCGGCCGCTGTAGTCCTGTTCCAGGCCTGTCCAGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS CAA 72 bp GTTCTTCCTCCGTCTCGAACGCACGCTTTGTTACTGTaGGGCTGTTCACGCACGCTGGGCTGTTGGCATTGT +
Preference number: 6 (lower is better)
Translates to: VLPPSRTHALLL*GCSRTLGCWHC
Trigger: ACAATGCCAACAGCCCAGCGTGCGTGAACAGCCCAACAGTAACAAAGCGTGCGTTCGAGACGGAGGAAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS CAA 90 bp CCGGGGATTGCCAGGGTTGTTGTTTGTAAAGTTATTGTAAGAGTCTaGGCTGGTCAGCTTCCCATGCAGCGGGGAGCCAGAAGGGCTGCT +
Preference number: 6 (lower is better)
Translates to: PGIARVVVCKVIVRV*AGQLPMQRGARRAA
Trigger: AGCAGCCCTTCTGGCTCCCCGCTGCATGGGAAGCTGACCAGCCAAGACTCTTACAATAACTTTACAAACAACAACCCTGGCAATCCCCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CAA 90 bp GCCTGTTCGCTTCGTGATGGTTCCCAGTGTCATTGGCTGTTTGATTaGCGCAAGAGGCGTCACTACCATCAAGCTGGGGAGGGGAGAAAG +
Preference number: 6 (lower is better)
Translates to: ACSLRDGSQCHWLFD*RKRRHYHQAGEGRK
Trigger: CTTTCTCCCCTCCCCAGCTTGATGGTAGTGACGCCTCTTGCGCAAATCAAACAGCCAATGACACTGGGAACCATCACGAAGCGAACAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000154396.8
CDS CAA 90 bp GAACTAGTTGATATGACCGTGGTCTGGCCTGAGGTTTGGATGGTTTaGAAATGGAATTGTGGGCCCATCCACAGGCGCCTGTGGGGTCCG +
Preference number: 6 (lower is better)
Translates to: ELVDMTVVWPEVWMV*KWNCGPIHRRLWGP
Trigger: CGGACCCCACAGGCGCCTGTGGATGGGCCCACAATTCCATTTCAAAACCATCCAAACCTCAGGCCAGACCACGGTCATATCAACTAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CAA 90 bp CCCTGTTCGCTTCGTGATGGTTCCCAGTGTCATTGGCTGTTTGATTaGCGCAAGAGGCGTCACTACCATCAAGCTGGGGAGGGGAGAAAG +
Preference number: 6 (lower is better)
Translates to: PCSLRDGSQCHWLFD*RKRRHYHQAGEGRK
Trigger: CTTTCTCCCCTCCCCAGCTTGATGGTAGTGACGCCTCTTGCGCAAATCAAACAGCCAATGACACTGGGAACCATCACGAAGCGAACAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074875.11
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
CDS TCA 72 bp CCAGCCCAGCACTTTTCTGGAAACGGCTCATGCGATTaGCTACTCGTGGTGACATGTGTGTGCGGACACAAG +
Preference number: 6 (lower is better)
Translates to: PAQHFSGNGSCD*LLVVTCVCGHK
Trigger: CTTGTGTCCGCACACACATGTCACCACGAGTAGTCAATCGCATGAGCCGTTTCCAGAAAAGTGCTGGGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS CCA 72 bp TTCTGCAGCGAGGAGCAGAGGGTGATTCGCATTGAATaGCGGCTGCAGTTCATTCCACTGAGGCGTTCTAAC +
Preference number: 6 (lower is better)
Translates to: FCSEEQRVIRIE*RLQFIPLRRSN
Trigger: GTTAGAACGCCTCAGTGGAATGAACTGCAGCCGCCATTCAATGCGAATCACCCTCTGCTCCTCGCTGCAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CCA 72 bp TTCTTCCTCCGTCTCGAACGCACGCTTTGTTACTGTTaGGCTGTTCACGCACGCTGGGCTGTTGGCATTGTT +
Preference number: 6 (lower is better)
Translates to: FFLRLERTLCYC*AVHARWAVGIV
Trigger: AACAATGCCAACAGCCCAGCGTGCGTGAACAGCCCAACAGTAACAAAGCGTGCGTTCGAGACGGAGGAAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000149662.2
CDS CAA 72 bp GATATGACCGTGGTCTGGCCTGAGGTTTGGATGGTTTaGAAATGGAATTGTGGGCCCATCCACAGGCGCCTG +
Preference number: 6 (lower is better)
Translates to: DMTVVWPEVWMV*KWNCGPIHRRL
Trigger: CAGGCGCCTGTGGATGGGCCCACAATTCCATTTCAAAACCATCCAAACCTCAGGCCAGACCACGGTCATATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CAA 90 bp ACTTTGCCTGTTCGCTTCGTGATGGTTCCCAGTGTCATTGGCTGTTaGATTTGCGCAAGAGGCGTCACTACCATCAAGCTGGGGAGGGGA +
Preference number: 6 (lower is better)
Translates to: TLPVRFVMVPSVIGC*ICARGVTTIKLGRG
Trigger: TCCCCTCCCCAGCTTGATGGTAGTGACGCCTCTTGCGCAAATCAAACAGCCAATGACACTGGGAACCATCACGAAGCGAACAGGCAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000154396.8
CDS CAA 90 bp TCAATCTCTTCCAGCCCAGCACTTTTCTGGAAACGGCTCATGCGATaGACTACTCGTGGTGACATGTGTGTGCGGACACAAGGCTGGCCA +
Preference number: 6 (lower is better)
Translates to: SISSSPALFWKRLMR*TTRGDMCVRTQGWP
Trigger: TGGCCAGCCTTGTGTCCGCACACACATGTCACCACGAGTAGTCAATCGCATGAGCCGTTTCCAGAAAAGTGCTGGGCTGGAAGAGATTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS TCA 72 bp CTGAGGCGTTCTAACAAGTGTCCAGCTGGCACGGGGTaGCGTCATTATCTCCAGTGGTGTGTCGTCACTTAT +
Preference number: 6 (lower is better)
Translates to: LRRSNKCPAGTG*RHYLQWCVVTY
Trigger: ATAAGTGACGACACACCACTGGAGATAATGACGTCACCCCGTGCCAGCTGGACACTTGTTAGAACGCCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS TCA 72 bp GAGCTGTTACTCAGAGTCTCGATGCTTCCCTCTCGCTaGAGTTCCAAACACTTCACAGCCATGGGTCTCTCG +
Preference number: 6 (lower is better)
Translates to: ELLLRVSMLPSR*SSKHFTAMGLS
Trigger: CGAGAGACCCATGGCTGTGAAGTGTTTGGAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092822.5
ENSMUST00000142596.8
CDS TCA 72 bp TTTCTGGAAACGGCTCATGCGATTGACTACTCGTGGTaGCATGTGTGTGCGGACACAAGGCTGGCCACCATA +
Preference number: 6 (lower is better)
Translates to: FLETAHAIDYSW*HVCADTRLATI
Trigger: TATGGTGGCCAGCCTTGTGTCCGCACACACATGTCACCACGAGTAGTCAATCGCATGAGCCGTTTCCAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS TCA 72 bp GAGCTGTTACTCAGAGTCTCGATGCTTCCCTCTCGCTaGAGTTCTGTTCCAGATCCCACAACGTCTCGGCTT +
Preference number: 6 (lower is better)
Translates to: ELLLRVSMLPSR*SSVPDPTTSRL
Trigger: AAGCCGAGACGTTGTGGGATCTGGAACAGAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000154396.8
CDS GCA 72 bp TTCGTGATGGTTCCCAGTGTCATTGGCTGTTTGATTTaGGCAAGAGGCGTCACTACCATCAAGCTGGGGAGG +
Preference number: 6 (lower is better)
Translates to: FVMVPSVIGCLI*ARGVTTIKLGR
Trigger: CCTCCCCAGCTTGATGGTAGTGACGCCTCTTGCGCAAATCAAACAGCCAATGACACTGGGAACCATCACGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CAA 72 bp CTTCGTGATGGTTCCCAGTGTCATTGGCTGTTTGATTaGCGCAAGAGGCGTCACTACCATCAAGCTGGGGAG +
Preference number: 6 (lower is better)
Translates to: LRDGSQCHWLFD*RKRRHYHQAGE
Trigger: CTCCCCAGCTTGATGGTAGTGACGCCTCTTGCGCAAATCAAACAGCCAATGACACTGGGAACCATCACGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CAA 72 bp GACGTCATTATCTCCAGTGGTGTGTCGTCACTTATCTaGGGAGCAGTACTGATCGGCCGGGGCTCAATCATG +
Preference number: 6 (lower is better)
Translates to: DVIISSGVSSLI*GAVLIGRGSIM
Trigger: CATGATTGAGCCCCGGCCGATCAGTACTGCTCCCAAGATAAGTGACGACACACCACTGGAGATAATGACGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CAA 72 bp TCCAGCCCAGCACTTTTCTGGAAACGGCTCATGCGATaGACTACTCGTGGTGACATGTGTGTGCGGACACAA +
Preference number: 6 (lower is better)
Translates to: SSPALFWKRLMR*TTRGDMCVRTQ
Trigger: TTGTGTCCGCACACACATGTCACCACGAGTAGTCAATCGCATGAGCCGTTTCCAGAAAAGTGCTGGGCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS TCA 72 bp CCAGGTGATAGAGCAAGAATCTACTGGAAAGCAGCATaGGAGGAAAGTGTTTACCATGCAGCGGGGAGCCAG +
Preference number: 6 (lower is better)
Translates to: PGDRARIYWKAA*EESVYHAAGSQ
Trigger: CTGGCTCCCCGCTGCATGGTAAACACTTTCCTCTCATGCTGCTTTCCAGTAGATTCTTGCTCTATCACCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108056.8
CDS TCA 72 bp AGACCCACTGTAAGCCTCCTTGTTACACAGGGCTCTTaGCCACACATAAGACACCTGTGGCACAACATCCTG +
Preference number: 6 (lower is better)
Translates to: RPTVSLLVTQGS*PHIRHLWHNIL
Trigger: CAGGATGTTGTGCCACAGGTGTCTTATGTGTGGTCAAGAGCCCTGTGTAACAAGGAGGCTTACAGTGGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138423.8
CDS CAA 72 bp GCCAGGGTTGTTGTTTGTAAAGTTATTGTAAGAGTCTaGGCTGGTCAGCTTCCCATGCAGCGGGGAGCCAGA +
Preference number: 6 (lower is better)
Translates to: ARVVVCKVIVRV*AGQLPMQRGAR
Trigger: TCTGGCTCCCCGCTGCATGGGAAGCTGACCAGCCAAGACTCTTACAATAACTTTACAAACAACAACCCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CAA 72 bp GTTCGCTTCGTGATGGTTCCCAGTGTCATTGGCTGTTaGATTTGCGCAAGAGGCGTCACTACCATCAAGCTG +
Preference number: 6 (lower is better)
Translates to: VRFVMVPSVIGC*ICARGVTTIKL
Trigger: CAGCTTGATGGTAGTGACGCCTCTTGCGCAAATCAAACAGCCAATGACACTGGGAACCATCACGAAGCGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS TCA 72 bp AAACTGAATGGACTTGACCATTTCCCCAGTCCGGAGTaGATACAGATCCACACAGCAGTACGGTGGTGTCGT +
Preference number: 6 (lower is better)
Translates to: KLNGLDHFPSPE*IQIHTAVRWCR
Trigger: ACGACACCACCGTACTGCTGTGTGGATCTGTATTCACTCCGGACTGGGGAAATGGTCAAGTCCATTCAGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS CCA 72 bp TTTCTGCATAAGCAAGCCAGCGGCTCCCAAGAGCAATaGGATTCATGTTTGGCCCAGGACAAGGATAACAAC +
Preference number: 6 (lower is better)
Translates to: FLHKQASGSQEQ*DSCLAQDKDNN
Trigger: GTTGTTATCCTTGTCCTGGGCCAAACATGAATCCCATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS CCA 72 bp AGCTCTTGTTCAATCTCTTCCAGCCCAGCACTTTTCTaGAAACGGCTCATGCGATTGACTACTCGTGGTGAC +
Preference number: 6 (lower is better)
Translates to: SSCSISSSPALF*KRLMRLTTRGD
Trigger: GTCACCACGAGTAGTCAATCGCATGAGCCGTTTCCAGAAAAGTGCTGGGCTGGAAGAGATTGAACAAGAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000154396.8
CDS CAA 72 bp TGGACTGATCTTTTTCCCGTTTCAGACCAGCGTTGTTaGCAAACCACGACCTGGAAGTCCCAAACACTGCAG +
Preference number: 6 (lower is better)
Translates to: WTDLFPVSDQRC*QTTTWKSQTLQ
Trigger: CTGCAGTGTTTGGGACTTCCAGGTCGTGGTTTGCAAACAACGCTGGTCTGAAACGGGAAAAAGATCAGTCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS GCA 72 bp CACAGCAGTACGGTGGTGTCGTGCCTGAAGATCCAATaGTCTTACAAACACCAAGAAGAGGTCTTTTCTCAG +
Preference number: 6 (lower is better)
Translates to: HSSTVVSCLKIQ*SYKHQEEVFSQ
Trigger: CTGAGAAAAGACCTCTTCTTGGTGTTTGTAAGAGCATTGGATCTTCAGGCACGACACCACCGTACTGCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000108056.8
ENSMUST00000108061.8
ENSMUST00000108062.8
CDS CCA 72 bp GAACTAGTTGATATGACCGTGGTCTGGCCTGAGGTTTaGATGGTTTTGAAATGGAATTGTGGGCCCATCCAC +
Preference number: 6 (lower is better)
Translates to: ELVDMTVVWPEV*MVLKWNCGPIH
Trigger: GTGGATGGGCCCACAATTCCATTTCAAAACCATCCAAACCTCAGGCCAGACCACGGTCATATCAACTAGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CAA 90 bp GAAGTCCCAAACACTGCAGCCACGCAAAACTCACCGCCCATTGATTaGCTTGGAGAAATTTGTGGAGGTGATTTAACTTTGCCTGTTCGC +
Preference number: 6 (lower is better)
Translates to: EVPNTAATQNSPPID*LGEICGGDLTLPVR
Trigger: GCGAACAGGCAAAGTTAAATCACCTCCACAAATTTCTCCAAGCAAATCAATGGGCGGTGAGTTTTGCGTGGCTGCAGTGTTTGGGACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000154396.8
CDS CAA 72 bp AACACTGCAGCCACGCAAAACTCACCGCCCATTGATTaGCTTGGAGAAATTTGTGGAGGTGATTTAACTTTG +
Preference number: 6 (lower is better)
Translates to: NTAATQNSPPID*LGEICGGDLTL
Trigger: CAAAGTTAAATCACCTCCACAAATTTCTCCAAGCAAATCAATGGGCGGTGAGTTTTGCGTGGCTGCAGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8
CDS CAA 72 bp GATTTGCTTGGAGAAATTTGTGGAGGTGATTTAACTTaGCCTGTTCGCTTCGTGATGGTTCCCAGTGTCATT +
Preference number: 6 (lower is better)
Translates to: DLLGEICGGDLT*PVRFVMVPSVI
Trigger: AATGACACTGGGAACCATCACGAAGCGAACAGGCAAAGTTAAATCACCTCCACAAATTTCTCCAAGCAAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000154396.8
CDS CAA 72 bp GTAGCAGCTGATGATGTAAAGAGATTCAACTACAACTaGTTTGGACTGATCTTTTTCCCGTTTCAGACCAGC +
Preference number: 6 (lower is better)
Translates to: VAADDVKRFNYN*FGLIFFPFQTS
Trigger: GCTGGTCTGAAACGGGAAAAAGATCAGTCCAAACAAGTTGTAGTTGAATCTCTTTACATCATCAGCTGCTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000074875.11
ENSMUST00000092821.10
ENSMUST00000092822.5
ENSMUST00000108061.8
ENSMUST00000108062.8
ENSMUST00000142596.8
ENSMUST00000154396.8