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Pregenerated sensors for BCAS2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005687

Ensembl transcript IDs: ENSMUST00000005830.15, ENSMUST00000135017.2

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTGAACTCCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCGCTaGGCCATCTCACCAGCCCAAAACATATTCTTATATTTCTGCATT +
Preference number: 1 (lower is better)
Translates to: LNSGPSEEQSGALTR*AISPAQNIFLYFCI
Trigger: AATGCAGAAATATAAGAATATGTTTTGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005830.15
ENSMUST00000135017.2
3UTR-3UTR TCA 90 bp AGAGGGAATCAGATCTCATTACGGGTGGTTGTGAGCCACTATGTGGTTGCTGGGCCCCGTGCTGCTGCTTaGTCTGATAGATCTCGTTCT +
Preference number: 2 (lower is better)
Translates to: RGNQISLRVVVSHYVVAGPRAAA*SDRSRS
Trigger: AGAACGAGATCTATCAGATCAAGCAGCAGCACGGGG...CCCAGCAACCACATAGTGGCTCACAACCACCCGTAATGAGATCTGATTCCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135017.2
3UTR-3UTR CCA 90 bp CAGAAGAGGGAATCAGATCTCATTACGGGTGGTTGTGAGCCACTATGTGGTTGCGGATGTTTTCCTTGTTaGCCTCCCCGTGCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: QKRESDLITGGCEPLCGCGCFPC*PPRAAA
Trigger: AGCAGCAGCACGGGGAGGCCAACAAGGAAAACATCC...GCAACCACATAGTGGCTCACAACCACCCGTAATGAGATCTGATTCCCTCTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135017.2
3UTR-3UTR GCA 90 bp GAATCAGATCTCATTACGGGTGGTTGTGAGCCACTATGTGGTTGCTGGGATTTGCCAGAACATGTTGGATaGCTTAAAAATAAAGGAGCT +
Preference number: 2 (lower is better)
Translates to: ESDLITGGCEPLCGCWDLPEHVG*LKNKGA
Trigger: AGCTCCTTTATTTTTAAGGCATCCAACATGTTCTGG...CAAATCCCAGCAACCACATAGTGGCTCACAACCACCCGTAATGAGATCTGATTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005830.15
ENSMUST00000135017.2
3UTR-3UTR GCA 90 bp TACCCGCTGAGCCATCTCACCAGCCCAAAACATATTCTTATATTTCTGCATTTTCCAGAACATGTTGGATaGCTTAAAAATAAAGGAGCT +
Preference number: 2 (lower is better)
Translates to: YPLSHLTSPKHILIFLHFPEHVG*LKNKGA
Trigger: AGCTCCTTTATTTTTAAGGCATCCAACATGTTCTGG...AAAATGCAGAAATATAAGAATATGTTTTGGGCTGGTGAGATGGCTCAGCGGGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000005830.15
ENSMUST00000135017.2
3UTR-3UTR TCA 90 bp AAACAGCAACATGTTGACAACTTTATTTTGCTAAGACACTCACACAGAAGCAATCATATCGTTTCATGCTaGGTAATTCAATCGGTTGTC +
Preference number: 2 (lower is better)
Translates to: KQQHVDNFILLRHSHRSNHIVSC*VIQSVV
Trigger: GACAACCGATTGAATTACTCAGCATGAAACGATATG...ATTGCTTCTGTGTGAGTGTCTTAGCAAAATAAAGTTGTCAACATGTTGCTGTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135017.2
3UTR TCA 72 bp CGGGTGGTTGTGAGCCACTATGTGGTTGCTGGGATTTaGACTCCGGACCTTCGGAAGAGCAGTCGGGTGCTC +
Preference number: 3 (lower is better)
Translates to: RVVVSHYVVAGI*TPDLRKSSRVL
Trigger: GAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATAGTGGCTCACAACCACCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005830.15
ENSMUST00000135017.2
3UTR CCA 72 bp CTCATTACGGGTGGTTGTGAGCCACTATGTGGTTGCTaGGATTTGAACTCCGGACCTTCGGAAGAGCAGTCG +
Preference number: 3 (lower is better)
Translates to: LITGGCEPLCGC*DLNSGPSEEQS
Trigger: CGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATAGTGGCTCACAACCACCCGTAATGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005830.15
ENSMUST00000135017.2
3UTR-3UTR CAA 90 bp GAATCAGATCTCATTACGGGTGGTTGTGAGCCACTATGTGGTTGCTGGGATTTGCGGATGTTTTCCTTGTaGGCCTCCCCGTGCTGCTGC +
Preference number: 3 (lower is better)
Translates to: ESDLITGGCEPLCGCWDLRMFSL*ASPCCC
Trigger: GCAGCAGCACGGGGAGGCCAACAAGGAAAACATCCG...CAAATCCCAGCAACCACATAGTGGCTCACAACCACCCGTAATGAGATCTGATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135017.2
3UTR TCA 72 bp GGATGTTTTCCTTGTTGGCCTCCCCGTGCTGCTGCTTaGTCTGATAGATCTCGTTCTCCAGCTGGACAATCG +
Preference number: 3 (lower is better)
Translates to: GCFPCWPPRAAA*SDRSRSPAGQS
Trigger: CGATTGTCCAGCTGGAGAACGAGATCTATCAGATCAAGCAGCAGCACGGGGAGGCCAACAAGGAAAACATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135017.2
3UTR GCA 72 bp GATCTCATTACGGGTGGTTGTGAGCCACTATGTGGTTaGTGGGATTTGAACTCCGGACCTTCGGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: DLITGGCEPLCG*WDLNSGPSEEQ
Trigger: CTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATAGTGGCTCACAACCACCCGTAATGAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005830.15
ENSMUST00000135017.2
3UTR-3UTR CAA 90 bp TTCCAGCTTCCAGAACATGTTGGATGCCTTAAAAATAAAGGAGCTTCATTACAATGGCGGATGTTTTCCTaGTTGGCCTCCCCGTGCTGC +
Preference number: 3 (lower is better)
Translates to: FQLPEHVGCLKNKGASLQWRMFS*LASPCC
Trigger: GCAGCACGGGGAGGCCAACAAGGAAAACATCCGCCA...TTGTAATGAAGCTCCTTTATTTTTAAGGCATCCAACATGTTCTGGAAGCTGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000135017.2
3UTR-3UTR CAA 90 bp AGCTGTCTTCAGACACTCCAGAAGAGGGAATCAGATCTCATTACGGGTGGTTGTGGGAGCCTCATTCTTTaGAATACCATCAATAAAGTT +
Preference number: 3 (lower is better)
Translates to: SCLQTLQKRESDLITGGCGSLIL*NTINKV
Trigger: AACTTTATTGATGGTATTCAAAAGAATGAGGCTCCC...ACAACCACCCGTAATGAGATCTGATTCCCTCTTCTGGAGTGTCTGAAGACAGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005830.15
ENSMUST00000135017.2
3UTR-3UTR CAA 90 bp TACCCGCTGAGCCATCTCACCAGCCCAAAACATATTCTTATATTTCTGCATTTTGGGAGCCTCATTCTTTaGAATACCATCAATAAAGTT +
Preference number: 3 (lower is better)
Translates to: YPLSHLTSPKHILIFLHFGSLIL*NTINKV
Trigger: AACTTTATTGATGGTATTCAAAAGAATGAGGCTCCC...AAAATGCAGAAATATAAGAATATGTTTTGGGCTGGTGAGATGGCTCAGCGGGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005830.15
ENSMUST00000135017.2
3UTR CAA 72 bp ACGGGTGGTTGTGAGCCACTATGTGGTTGCTGGGATTaGAACTCCGGACCTTCGGAAGAGCAGTCGGGTGCT +
Preference number: 4 (lower is better)
Translates to: TGGCEPLCGCWD*NSGPSEEQSGA
Trigger: AGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATAGTGGCTCACAACCACCCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005830.15
ENSMUST00000135017.2
CDS-3UTR CCA 90 bp AAGGTTTCCAGCTTCCAGAACATGTTGGATGCCTTAAAAATAAAGGAGCTTCATGGATGTTTTCCTTGTTaGCCTCCCCGTGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: KVSSFQNMLDALKIKELHGCFPC*PPRAAA
Trigger: AGCAGCAGCACGGGGAGGCCAACAAGGAAAACATCC...ATGAAGCTCCTTTATTTTTAAGGCATCCAACATGTTCTGGAAGCTGGAAACCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000005830.15
CDS-3UTR TCA 90 bp GTTGACAACTTTATTTTGCTAAGACACTCACACAGAAGCAATACAACAGTTTACCCCCGTGCTGCTGCTTaGTCTGATAGATCTCGTTCT +
Preference number: 4 (lower is better)
Translates to: VDNFILLRHSHRSNTTVYPRAAA*SDRSRS
Trigger: AGAACGAGATCTATCAGATCAAGCAGCAGCACGGGG...GTAAACTGTTGTATTGCTTCTGTGTGAGTGTCTTAGCAAAATAAAGTTGTCAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005830.15
CDS-3UTR TCA 90 bp AAGGTTTCCAGCTTCCAGAACATGTTGGATGCCTTAAAAATAAAGGAGCTTCATCATATCGTTTCATGCTaGGTAATTCAATCGGTTGTC +
Preference number: 4 (lower is better)
Translates to: KVSSFQNMLDALKIKELHHIVSC*VIQSVV
Trigger: GACAACCGATTGAATTACTCAGCATGAAACGATATG...ATGAAGCTCCTTTATTTTTAAGGCATCCAACATGTTCTGGAAGCTGGAAACCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005830.15
CDS-3UTR CAA 90 bp AAGAGGGAATCAGATCTCATTACGGGTGGTTGTGAGCCACTATGTGGTTGCTGGTGGCGGATGTTTTCCTaGTTGGCCTCCCCGTGCTGC +
Preference number: 5 (lower is better)
Translates to: KRESDLITGGCEPLCGCWWRMFS*LASPCC
Trigger: GCAGCACGGGGAGGCCAACAAGGAAAACATCCGCCA...CCAGCAACCACATAGTGGCTCACAACCACCCGTAATGAGATCTGATTCCCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005830.15
CDS-3UTR CAA 90 bp ACACTCACACAGAAGCAATACAACAGTTTACATAGTCCATGGTCTCTAACCATGCGGATGTTTTCCTTGTaGGCCTCCCCGTGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: TLTQKQYNSLHSPWSLTMRMFSL*ASPCCC
Trigger: GCAGCAGCACGGGGAGGCCAACAAGGAAAACATCCG...CATGGTTAGAGACCATGGACTATGTAAACTGTTGTATTGCTTCTGTGTGAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005830.15