Pregenerated sensors for BCAS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005687Ensembl transcript IDs: ENSMUST00000005830.15, ENSMUST00000135017.2
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTGAACTCCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCGCTaGGCCATCTCACCAGCCCAAAACATATTCTTATATTTCTGCATT | + |
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Preference number: 1 (lower is better) Translates to: LNSGPSEEQSGALTR*AISPAQNIFLYFCI Trigger: AATGCAGAAATATAAGAATATGTTTTGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005830.15 ENSMUST00000135017.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGGGAATCAGATCTCATTACGGGTGGTTGTGAGCCACTATGTGGTTGCTGGGCCCCGTGCTGCTGCTTaGTCTGATAGATCTCGTTCT | + |
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Preference number: 2 (lower is better) Translates to: RGNQISLRVVVSHYVVAGPRAAA*SDRSRS Trigger: AGAACGAGATCTATCAGATCAAGCAGCAGCACGGGG...CCCAGCAACCACATAGTGGCTCACAACCACCCGTAATGAGATCTGATTCCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135017.2 |
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| 3UTR-3UTR CCA 90 bp | CAGAAGAGGGAATCAGATCTCATTACGGGTGGTTGTGAGCCACTATGTGGTTGCGGATGTTTTCCTTGTTaGCCTCCCCGTGCTGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: QKRESDLITGGCEPLCGCGCFPC*PPRAAA Trigger: AGCAGCAGCACGGGGAGGCCAACAAGGAAAACATCC...GCAACCACATAGTGGCTCACAACCACCCGTAATGAGATCTGATTCCCTCTTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135017.2 |
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| 3UTR-3UTR GCA 90 bp | GAATCAGATCTCATTACGGGTGGTTGTGAGCCACTATGTGGTTGCTGGGATTTGCCAGAACATGTTGGATaGCTTAAAAATAAAGGAGCT | + |
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Preference number: 2 (lower is better) Translates to: ESDLITGGCEPLCGCWDLPEHVG*LKNKGA Trigger: AGCTCCTTTATTTTTAAGGCATCCAACATGTTCTGG...CAAATCCCAGCAACCACATAGTGGCTCACAACCACCCGTAATGAGATCTGATTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005830.15 ENSMUST00000135017.2 |
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| 3UTR-3UTR GCA 90 bp | TACCCGCTGAGCCATCTCACCAGCCCAAAACATATTCTTATATTTCTGCATTTTCCAGAACATGTTGGATaGCTTAAAAATAAAGGAGCT | + |
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Preference number: 2 (lower is better) Translates to: YPLSHLTSPKHILIFLHFPEHVG*LKNKGA Trigger: AGCTCCTTTATTTTTAAGGCATCCAACATGTTCTGG...AAAATGCAGAAATATAAGAATATGTTTTGGGCTGGTGAGATGGCTCAGCGGGTA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000005830.15 ENSMUST00000135017.2 |
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| 3UTR-3UTR TCA 90 bp | AAACAGCAACATGTTGACAACTTTATTTTGCTAAGACACTCACACAGAAGCAATCATATCGTTTCATGCTaGGTAATTCAATCGGTTGTC | + |
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Preference number: 2 (lower is better) Translates to: KQQHVDNFILLRHSHRSNHIVSC*VIQSVV Trigger: GACAACCGATTGAATTACTCAGCATGAAACGATATG...ATTGCTTCTGTGTGAGTGTCTTAGCAAAATAAAGTTGTCAACATGTTGCTGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135017.2 |
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| 3UTR TCA 72 bp | CGGGTGGTTGTGAGCCACTATGTGGTTGCTGGGATTTaGACTCCGGACCTTCGGAAGAGCAGTCGGGTGCTC | + |
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Preference number: 3 (lower is better) Translates to: RVVVSHYVVAGI*TPDLRKSSRVL Trigger: GAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATAGTGGCTCACAACCACCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005830.15 ENSMUST00000135017.2 |
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| 3UTR CCA 72 bp | CTCATTACGGGTGGTTGTGAGCCACTATGTGGTTGCTaGGATTTGAACTCCGGACCTTCGGAAGAGCAGTCG | + |
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Preference number: 3 (lower is better) Translates to: LITGGCEPLCGC*DLNSGPSEEQS Trigger: CGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATAGTGGCTCACAACCACCCGTAATGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005830.15 ENSMUST00000135017.2 |
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| 3UTR-3UTR CAA 90 bp | GAATCAGATCTCATTACGGGTGGTTGTGAGCCACTATGTGGTTGCTGGGATTTGCGGATGTTTTCCTTGTaGGCCTCCCCGTGCTGCTGC | + |
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Preference number: 3 (lower is better) Translates to: ESDLITGGCEPLCGCWDLRMFSL*ASPCCC Trigger: GCAGCAGCACGGGGAGGCCAACAAGGAAAACATCCG...CAAATCCCAGCAACCACATAGTGGCTCACAACCACCCGTAATGAGATCTGATTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135017.2 |
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| 3UTR TCA 72 bp | GGATGTTTTCCTTGTTGGCCTCCCCGTGCTGCTGCTTaGTCTGATAGATCTCGTTCTCCAGCTGGACAATCG | + |
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Preference number: 3 (lower is better) Translates to: GCFPCWPPRAAA*SDRSRSPAGQS Trigger: CGATTGTCCAGCTGGAGAACGAGATCTATCAGATCAAGCAGCAGCACGGGGAGGCCAACAAGGAAAACATCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135017.2 |
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| 3UTR GCA 72 bp | GATCTCATTACGGGTGGTTGTGAGCCACTATGTGGTTaGTGGGATTTGAACTCCGGACCTTCGGAAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: DLITGGCEPLCG*WDLNSGPSEEQ Trigger: CTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATAGTGGCTCACAACCACCCGTAATGAGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005830.15 ENSMUST00000135017.2 |
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| 3UTR-3UTR CAA 90 bp | TTCCAGCTTCCAGAACATGTTGGATGCCTTAAAAATAAAGGAGCTTCATTACAATGGCGGATGTTTTCCTaGTTGGCCTCCCCGTGCTGC | + |
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Preference number: 3 (lower is better) Translates to: FQLPEHVGCLKNKGASLQWRMFS*LASPCC Trigger: GCAGCACGGGGAGGCCAACAAGGAAAACATCCGCCA...TTGTAATGAAGCTCCTTTATTTTTAAGGCATCCAACATGTTCTGGAAGCTGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000135017.2 |
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| 3UTR-3UTR CAA 90 bp | AGCTGTCTTCAGACACTCCAGAAGAGGGAATCAGATCTCATTACGGGTGGTTGTGGGAGCCTCATTCTTTaGAATACCATCAATAAAGTT | + |
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Preference number: 3 (lower is better) Translates to: SCLQTLQKRESDLITGGCGSLIL*NTINKV Trigger: AACTTTATTGATGGTATTCAAAAGAATGAGGCTCCC...ACAACCACCCGTAATGAGATCTGATTCCCTCTTCTGGAGTGTCTGAAGACAGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005830.15 ENSMUST00000135017.2 |
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| 3UTR-3UTR CAA 90 bp | TACCCGCTGAGCCATCTCACCAGCCCAAAACATATTCTTATATTTCTGCATTTTGGGAGCCTCATTCTTTaGAATACCATCAATAAAGTT | + |
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Preference number: 3 (lower is better) Translates to: YPLSHLTSPKHILIFLHFGSLIL*NTINKV Trigger: AACTTTATTGATGGTATTCAAAAGAATGAGGCTCCC...AAAATGCAGAAATATAAGAATATGTTTTGGGCTGGTGAGATGGCTCAGCGGGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005830.15 ENSMUST00000135017.2 |
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| 3UTR CAA 72 bp | ACGGGTGGTTGTGAGCCACTATGTGGTTGCTGGGATTaGAACTCCGGACCTTCGGAAGAGCAGTCGGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: TGGCEPLCGCWD*NSGPSEEQSGA Trigger: AGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATAGTGGCTCACAACCACCCGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005830.15 ENSMUST00000135017.2 |
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| CDS-3UTR CCA 90 bp | AAGGTTTCCAGCTTCCAGAACATGTTGGATGCCTTAAAAATAAAGGAGCTTCATGGATGTTTTCCTTGTTaGCCTCCCCGTGCTGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: KVSSFQNMLDALKIKELHGCFPC*PPRAAA Trigger: AGCAGCAGCACGGGGAGGCCAACAAGGAAAACATCC...ATGAAGCTCCTTTATTTTTAAGGCATCCAACATGTTCTGGAAGCTGGAAACCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000005830.15 |
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| CDS-3UTR TCA 90 bp | GTTGACAACTTTATTTTGCTAAGACACTCACACAGAAGCAATACAACAGTTTACCCCCGTGCTGCTGCTTaGTCTGATAGATCTCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: VDNFILLRHSHRSNTTVYPRAAA*SDRSRS Trigger: AGAACGAGATCTATCAGATCAAGCAGCAGCACGGGG...GTAAACTGTTGTATTGCTTCTGTGTGAGTGTCTTAGCAAAATAAAGTTGTCAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005830.15 |
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| CDS-3UTR TCA 90 bp | AAGGTTTCCAGCTTCCAGAACATGTTGGATGCCTTAAAAATAAAGGAGCTTCATCATATCGTTTCATGCTaGGTAATTCAATCGGTTGTC | + |
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Preference number: 4 (lower is better) Translates to: KVSSFQNMLDALKIKELHHIVSC*VIQSVV Trigger: GACAACCGATTGAATTACTCAGCATGAAACGATATG...ATGAAGCTCCTTTATTTTTAAGGCATCCAACATGTTCTGGAAGCTGGAAACCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005830.15 |
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| CDS-3UTR CAA 90 bp | AAGAGGGAATCAGATCTCATTACGGGTGGTTGTGAGCCACTATGTGGTTGCTGGTGGCGGATGTTTTCCTaGTTGGCCTCCCCGTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: KRESDLITGGCEPLCGCWWRMFS*LASPCC Trigger: GCAGCACGGGGAGGCCAACAAGGAAAACATCCGCCA...CCAGCAACCACATAGTGGCTCACAACCACCCGTAATGAGATCTGATTCCCTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005830.15 |
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| CDS-3UTR CAA 90 bp | ACACTCACACAGAAGCAATACAACAGTTTACATAGTCCATGGTCTCTAACCATGCGGATGTTTTCCTTGTaGGCCTCCCCGTGCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: TLTQKQYNSLHSPWSLTMRMFSL*ASPCCC Trigger: GCAGCAGCACGGGGAGGCCAACAAGGAAAACATCCG...CATGGTTAGAGACCATGGACTATGTAAACTGTTGTATTGCTTCTGTGTGAGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005830.15 |
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