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Pregenerated sensors for BCAP31 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002015

Ensembl transcript IDs: ENSMUST00000002091.6

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp TCACCAGTGCTTTTCTACACTTCCAGGAGTGGAAAGTaGCCTAGCCAGGCAGAACAGTGGCAAAAGTACTCT +
Preference number: 3 (lower is better)
Translates to: SPVLFYTSRSGK*PSQAEQWQKYS
Trigger: AGAGTACTTTTGCCACTGTTCTGCCTGGCTAGGGCACTTTCCACTCCTGGAAGTGTAGAAAAGCACTGGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
3UTR GCA 72 bp ACAACATTTATTCCCCTCAGGATAAAACAGTTGACCTaGTTCACAGCAGCCTCCTTTAGGGTACATTGCAAA +
Preference number: 3 (lower is better)
Translates to: TTFIPLRIKQLT*FTAASFRVHCK
Trigger: TTTGCAATGTACCCTAAAGGAGGCTGCTGTGAAGCAGGTCAACTGTTTTATCCTGAGGGGAATAAATGTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS-3UTR GCA 90 bp GGGTTCAAACTGCAGGCCAGGTCACCAGTGCTTTTCTACACTTCCAGGAGTGGACACAGCAAAGACCTCTaGGTAGAGGAAGGTGGCAAC +
Preference number: 4 (lower is better)
Translates to: GFKLQARSPVLFYTSRSGHSKDL*VEEGGN
Trigger: GTTGCCACCTTCCTCTACGCAGAGGTCTTTGCTGTG...TCCACTCCTGGAAGTGTAGAAAAGCACTGGTGACCTGGCCTGCAGTTTGAACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS-3UTR GCA 90 bp AGCAGTAAGCATGGGTCAGGTAGAAGCCAGCGGCAGGCAGGGAAACACCAAGCCCCACAAAGAAAGTGTTaGCATAGGTCACTACCAACT +
Preference number: 4 (lower is better)
Translates to: SSKHGSGRSQRQAGKHQAPQRKC*HRSLPT
Trigger: AGTTGGTAGTGACCTATGGCAACACTTTCTTTGTGG...GGCTTGGTGTTTCCCTGCCTGCCGCTGGCTTCTACCTGACCCATGCTTACTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS-3UTR CCA 90 bp GGGTTCAAACTGCAGGCCAGGTCACCAGTGCTTTTCTACACTTCCAGGAGTGGAGCACCTGGATTGTTCTaGAGGTTCACCTTTTCTGTC +
Preference number: 4 (lower is better)
Translates to: GFKLQARSPVLFYTSRSGAPGLF*RFTFSV
Trigger: GACAGAAAAGGTGAACCTCCAGAACAATCCAGGTGC...TCCACTCCTGGAAGTGTAGAAAAGCACTGGTGACCTGGCCTGCAGTTTGAACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS-3UTR CCA 90 bp CTTTTCTACACTTCCAGGAGTGGAAAGTGCCCTAGCCAGGCAGAACAGTGGCAACGGAAAAGCTTCATGTaGAAGTGCTCCATGGCACCT +
Preference number: 4 (lower is better)
Translates to: LFYTSRSGKCPSQAEQWQRKSFM*KCSMAP
Trigger: AGGTGCCATGGAGCACTTCCACATGAAGCTTTTCCG...TTGCCACTGTTCTGCCTGGCTAGGGCACTTTCCACTCCTGGAAGTGTAGAAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS-3UTR CCA 90 bp GGAGTGGAAAGTGCCCTAGCCAGGCAGAACAGTGGCAAAAGTACTCTGAATAAATGTGGAAGTGCTCCATaGCACCTGGATTGTTCTGGA +
Preference number: 4 (lower is better)
Translates to: GVESALARQNSGKSTLNKCGSAP*HLDCSG
Trigger: TCCAGAACAATCCAGGTGCCATGGAGCACTTCCACA...TTTATTCAGAGTACTTTTGCCACTGTTCTGCCTGGCTAGGGCACTTTCCACTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
3UTR CAA 72 bp AACATAACAACATTTATTCCCCTCAGGATAAAACAGTaGACCTGCTTCACAGCAGCCTCCTTTAGGGTACAT +
Preference number: 4 (lower is better)
Translates to: NITTFIPLRIKQ*TCFTAASFRVH
Trigger: ATGTACCCTAAAGGAGGCTGCTGTGAAGCAGGTCAACTGTTTTATCCTGAGGGGAATAAATGTTGTTATGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS-3UTR GCA 90 bp AGTATGTGTAATGGTGCCAAAATAATGATCTATAAGCCATGGAAGAAAATTGGGAGCTTCATGTGGAAGTaGTCCATGGCACCTGGATTG +
Preference number: 4 (lower is better)
Translates to: SMCNGAKIMIYKPWKKIGSFMWK*SMAPGL
Trigger: CAATCCAGGTGCCATGGAGCACTTCCACATGAAGCT...CCCAATTTTCTTCCATGGCTTATAGATCATTATTTTGGCACCATTACACATACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS-3UTR CAA 90 bp GGTCACCAGTGCTTTTCTACACTTCCAGGAGTGGAAAGTGCCCTAGCCAGGCAGACTGATGCCTGCAGTTaGGCATGTTCTTCTAGCAGG +
Preference number: 5 (lower is better)
Translates to: GHQCFSTLPGVESALARQTDACS*ACSSSR
Trigger: CCTGCTAGAAGAACATGCCAAACTGCAGGCATCAGT...CTGCCTGGCTAGGGCACTTTCCACTCCTGGAAGTGTAGAAAAGCACTGGTGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS-3UTR CAA 90 bp AGGTCACCAGTGCTTTTCTACACTTCCAGGAGTGGAAAGTGCCCTAGCCAGGCATCCATGGCACCTGGATaGTTCTGGAGGTTCACCTTT +
Preference number: 5 (lower is better)
Translates to: RSPVLFYTSRSGKCPSQASMAPG*FWRFTF
Trigger: AAAGGTGAACCTCCAGAACAATCCAGGTGCCATGGA...TGCCTGGCTAGGGCACTTTCCACTCCTGGAAGTGTAGAAAAGCACTGGTGACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS CCA 90 bp CCTCTGAGCACGGAAAAGCTTCATGTGGAAGTGCTCCATGGCACCTaGATTGTTCTGGAGGTTCACCTTTTCTGTCACATCATCGTATTT +
Preference number: 5 (lower is better)
Translates to: PLSTEKLHVEVLHGT*IVLEVHLFCHIIVF
Trigger: AAATACGATGATGTGACAGAAAAGGTGAACCTCCAGAACAATCCAGGTGCCATGGAGCACTTCCACATGAAGCTTTTCCGTGCTCAGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS CCA 90 bp AGAGATTCCTCTGAGCACGGAAAAGCTTCATGTGGAAGTGCTCCATaGCACCTGGATTGTTCTGGAGGTTCACCTTTTCTGTCACATCAT +
Preference number: 5 (lower is better)
Translates to: RDSSEHGKASCGSAP*HLDCSGGSPFLSHH
Trigger: ATGATGTGACAGAAAAGGTGAACCTCCAGAACAATCCAGGTGCCATGGAGCACTTCCACATGAAGCTTTTCCGTGCTCAGAGGAATCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS CCA 90 bp CGGAAAAGCTTCATGTGGAAGTGCTCCATGGCACCTGGATTGTTCTaGAGGTTCACCTTTTCTGTCACATCATCGTATTTCAGGATCTCT +
Preference number: 5 (lower is better)
Translates to: RKSFMWKCSMAPGLF*RFTFSVTSSYFRIS
Trigger: AGAGATCCTGAAATACGATGATGTGACAGAAAAGGTGAACCTCCAGAACAATCCAGGTGCCATGGAGCACTTCCACATGAAGCTTTTCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS GCA 72 bp GAAGGGAATGCAGAGAAGCAACACAGCAAAGACCTCTaGGTAGAGGAAGGTGGCAACTGTAGTCCACTGCAA +
Preference number: 6 (lower is better)
Translates to: EGNAEKQHSKDL*VEEGGNCSPLQ
Trigger: TTGCAGTGGACTACAGTTGCCACCTTCCTCTACGCAGAGGTCTTTGCTGTGTTGCTTCTCTGCATTCCCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS CCA 72 bp TCTGAGCACGGAAAAGCTTCATGTGGAAGTGCTCCATaGCACCTGGATTGTTCTGGAGGTTCACCTTTTCTG +
Preference number: 6 (lower is better)
Translates to: SEHGKASCGSAP*HLDCSGGSPFL
Trigger: CAGAAAAGGTGAACCTCCAGAACAATCCAGGTGCCATGGAGCACTTCCACATGAAGCTTTTCCGTGCTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS CCA 72 bp ACGGAAAAGCTTCATGTGGAAGTGCTCCATGGCACCTaGATTGTTCTGGAGGTTCACCTTTTCTGTCACATC +
Preference number: 6 (lower is better)
Translates to: TEKLHVEVLHGT*IVLEVHLFCHI
Trigger: GATGTGACAGAAAAGGTGAACCTCCAGAACAATCCAGGTGCCATGGAGCACTTCCACATGAAGCTTTTCCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS CAA 72 bp AAAAGCTTCATGTGGAAGTGCTCCATGGCACCTGGATaGTTCTGGAGGTTCACCTTTTCTGTCACATCATCG +
Preference number: 6 (lower is better)
Translates to: KSFMWKCSMAPG*FWRFTFSVTSS
Trigger: CGATGATGTGACAGAAAAGGTGAACCTCCAGAACAATCCAGGTGCCATGGAGCACTTCCACATGAAGCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6
CDS CCA 72 bp TTCATGTGGAAGTGCTCCATGGCACCTGGATTGTTCTaGAGGTTCACCTTTTCTGTCACATCATCGTATTTC +
Preference number: 6 (lower is better)
Translates to: FMWKCSMAPGLF*RFTFSVTSSYF
Trigger: GAAATACGATGATGTGACAGAAAAGGTGAACCTCCAGAACAATCCAGGTGCCATGGAGCACTTCCACATGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002091.6