Pregenerated sensors for BBS5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063145Ensembl transcript IDs: ENSMUST00000074963.9, ENSMUST00000112286.9, ENSMUST00000127806.2, ENSMUST00000134659.8
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAACAACTCAAGATCAACTCATCACTTCCCAAAGTCCCTGCAGTGTaGATCCATCCTTCAGTTTCTCTATTGCAAGCCCCAGTTCTTCTG | + |
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Preference number: 1 (lower is better) Translates to: QQLKINSSLPKVPAV*IHPSVSLLQAPVLL Trigger: CAGAAGAACTGGGGCTTGCAATAGAGAAACTGAAGGATGGATTCACACTGCAGGGACTTTGGGAAGTGATGAGTTGATCTTGAGTTGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR GCA 90 bp | GTGAATCCAACAACTCAAGATCAACTCATCACTTCCCAAAGTCCCTaGAGTGTGAATCCATCCTTCAGTTTCTCTATTGCAAGCCCCAGT | + |
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Preference number: 1 (lower is better) Translates to: VNPTTQDQLITSQSP*SVNPSFSFSIASPS Trigger: ACTGGGGCTTGCAATAGAGAAACTGAAGGATGGATTCACACTGCAGGGACTTTGGGAAGTGATGAGTTGATCTTGAGTTGTTGGATTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR GCA 90 bp | GAGGTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTaGAGTGTGAATCCAACAACTCAAGATCAACTCATCACTTCCCAA | + |
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Preference number: 1 (lower is better) Translates to: EVQLNSFKINSSQSP*SVNPTTQDQLITSQ Trigger: TTGGGAAGTGATGAGTTGATCTTGAGTTGTTGGATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGACCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR TCA 90 bp | AGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTaGATCCAACAACTCAAGATCAACTCATCACTTCCCAAAGTCCCT | + |
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Preference number: 1 (lower is better) Translates to: SSTHSRLTHPKVPAV*IQQLKINSSLPKVP Trigger: AGGGACTTTGGGAAGTGATGAGTTGATCTTGAGTTGTTGGATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR TCA 90 bp | TGTGAATCCATCCTTCAGTTTCTCTATTGCAAGCCCCAGTTCTTCTaGAAATACAGGTTCACGATCTTGTTGCTTATTCCCATCAGCAAA | + |
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Preference number: 1 (lower is better) Translates to: CESILQFLYCKPQFF*KYRFTILLLIPISK Trigger: TTTGCTGATGGGAATAAGCAACAAGATCGTGAACCTGTATTTTCAGAAGAACTGGGGCTTGCAATAGAGAAACTGAAGGATGGATTCACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR TCA 90 bp | TTATCATACACATGCTCCTGTGGTAGTAACCTCAGCTGCTTGTTCTaGATGACTGCACTTCTCAACTTAAAGTCACGGTACATTTTAGAA | + |
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Preference number: 1 (lower is better) Translates to: LSYTCSCGSNLSCLF*MTALLNLKSRYILE Trigger: TTCTAAAATGTACCGTGACTTTAAGTTGAGAAGTGCAGTCATTCAGAACAAGCAGCTGAGGTTACTACCACAGGAGCATGTGTATGATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR-3UTR TCA 90 bp | GTTCCTAAATTCCCCTGGTCGCTGGACAGATTCCATACGCCATTGATCTTATCACTCAGCTGCTTGTTCTaGATGACTGCACTTCTCAAC | + |
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Preference number: 2 (lower is better) Translates to: VPKFPWSLDRFHTPLILSLSCLF*MTALLN Trigger: GTTGAGAAGTGCAGTCATTCAGAACAAGCAGCTGAG...TGATAAGATCAATGGCGTATGGAATCTGTCCAGCGACCAGGGGAATTTAGGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR-3UTR TCA 90 bp | GGTTCACGATCTTGTTGCTTATTCCCATCAGCAAAATACGCCACAAAAGCATCCTATCCTCCACTCTGCTaGGAGCTTTCTATGACAAGC | + |
|
Preference number: 2 (lower is better) Translates to: GSRSCCLFPSAKYATKASYPPLC*ELSMTS Trigger: GCTTGTCATAGAAAGCTCTCAGCAGAGTGGAGGATA...GGATGCTTTTGTGGCGTATTTTGCTGATGGGAATAAGCAACAAGATCGTGAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR-3UTR CCA 90 bp | TCCCAAAGTCCCTGCAGTGTGAATCCATCCTTCAGTTTCTCTATTGCAAGCCCCAGCTTCAAGTGGCTGTaGCTTTTCTTCCATTTCATA | + |
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Preference number: 2 (lower is better) Translates to: SQSPCSVNPSFSFSIASPSFKWL*LFFHFI Trigger: TATGAAATGGAAGAAAAGCCACAGCCACTTGAAGCT...GGGGCTTGCAATAGAGAAACTGAAGGATGGATTCACACTGCAGGGACTTTGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR-3UTR CCA 90 bp | TTATTCCCATCAGCAAAATACGCCACAAAAGCATCCGTGTGGTCATCAGAGTCTAGTCAGAGCTTCAAGTaGCTGTGGCTTTTCTTCCAT | + |
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Preference number: 2 (lower is better) Translates to: LFPSAKYATKASVWSSESSQSFK*LWLFFH Trigger: ATGGAAGAAAAGCCACAGCCACTTGAAGCTCTGACT...AGACTCTGATGACCACACGGATGCTTTTGTGGCGTATTTTGCTGATGGGAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR CAA 90 bp | AGCATCCGTGTGGTCATCAGAGTCTATTTCCACATCATCTTGAATTaGTTCAACAGTCAGAGCTTCAAGTGGCTGTGGCTTTTCTTCCAT | + |
|
Preference number: 2 (lower is better) Translates to: SIRVVIRVYFHIILN*FNSQSFKWLWLFFH Trigger: ATGGAAGAAAAGCCACAGCCACTTGAAGCTCTGACTGTTGAACAAATTCAAGATGATGTGGAAATAGACTCTGATGACCACACGGATGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR CAA 90 bp | CACAAAAGCATCCGTGTGGTCATCAGAGTCTATTTCCACATCATCTaGAATTTGTTCAACAGTCAGAGCTTCAAGTGGCTGTGGCTTTTC | + |
|
Preference number: 2 (lower is better) Translates to: HKSIRVVIRVYFHII*NLFNSQSFKWLWLF Trigger: GAAAAGCCACAGCCACTTGAAGCTCTGACTGTTGAACAAATTCAAGATGATGTGGAAATAGACTCTGATGACCACACGGATGCTTTTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR-3UTR GCA 90 bp | CCCTGCAGTGTGAATCCATCCTTCAGTTTCTCTATTGCAAGCCCCAGTTCTTCTTCATTCATATTGGCATaGCACACAATTCTCACATTG | + |
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Preference number: 2 (lower is better) Translates to: PCSVNPSFSFSIASPSSSSFILA*HTILTL Trigger: CAATGTGAGAATTGTGTGGCATGCCAATATGAATGA...AGAAGAACTGGGGCTTGCAATAGAGAAACTGAAGGATGGATTCACACTGCAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR-3UTR CCA 90 bp | TCTGAAAATACAGGTTCACGATCTTGTTGCTTATTCCCATCAGCAAAATACGCCGTTCCTAAATTCCCCTaGTCGCTGGACAGATTCCAT | + |
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Preference number: 2 (lower is better) Translates to: SENTGSRSCCLFPSAKYAVPKFP*SLDRFH Trigger: ATGGAATCTGTCCAGCGACCAGGGGAATTTAGGAAC...GGCGTATTTTGCTGATGGGAATAAGCAACAAGATCGTGAACCTGTATTTTCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR-3UTR GCA 90 bp | TTTGTTCAACAGTCAGAGCTTCAAGTGGCTGTGGCTTTTCTTCCATTTCATAATTCATCCCAAAGTCCCTaGAGTGTGAATCCAACAACT | + |
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Preference number: 2 (lower is better) Translates to: FVQQSELQVAVAFLPFHNSSQSP*SVNPTT Trigger: AGTTGTTGGATTCACACTGCAGGGACTTTGGGATGA...ATTATGAAATGGAAGAAAAGCCACAGCCACTTGAAGCTCTGACTGTTGAACAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR-3UTR CCA 90 bp | ATCAGCAAAATACGCCACAAAAGCATCCGTGTGGTCATCAGAGTCTATTTCCACCTCCAAATATTGGACTaGCAGAATAGACTTTGTGAA | + |
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Preference number: 2 (lower is better) Translates to: ISKIRHKSIRVVIRVYFHLQILD*QNRLCE Trigger: TTCACAAAGTCTATTCTGCCAGTCCAATATTTGGAG...GTGGAAATAGACTCTGATGACCACACGGATGCTTTTGTGGCGTATTTTGCTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR-3UTR GCA 90 bp | AGTTCTTCTGAAAATACAGGTTCACGATCTTGTTGCTTATTCCCATCAGCAAAACTTGTTCTGAATGACTaGACTTCTCAACTTAAAGTC | + |
|
Preference number: 2 (lower is better) Translates to: SSSENTGSRSCCLFPSAKLVLND*TSQLKV Trigger: GACTTTAAGTTGAGAAGTGCAGTCATTCAGAACAAG...TTTTGCTGATGGGAATAAGCAACAAGATCGTGAACCTGTATTTTCAGAAGAACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR-3UTR CAA 90 bp | TCCCAAAGTCCCTGCAGTGTGAATCCATCCTTCAGTTTCTCTATTGCAAGCCCCAGGTTCACGATCTTGTaGCTTATTCCCATCAGCAAA | + |
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Preference number: 3 (lower is better) Translates to: SQSPCSVNPSFSFSIASPRFTIL*LIPISK Trigger: TTTGCTGATGGGAATAAGCAACAAGATCGTGAACCT...GGGGCTTGCAATAGAGAAACTGAAGGATGGATTCACACTGCAGGGACTTTGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR TCA 72 bp | AAGATCAACTCATCACTTCCCAAAGTCCCTGCAGTGTaGATCCATCCTTCAGTTTCTCTATTGCAAGCCCCA | + |
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Preference number: 3 (lower is better) Translates to: KINSSLPKVPAV*IHPSVSLLQAP Trigger: TGGGGCTTGCAATAGAGAAACTGAAGGATGGATTCACACTGCAGGGACTTTGGGAAGTGATGAGTTGATCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR TCA 72 bp | ATCCTTCAGTTTCTCTATTGCAAGCCCCAGTTCTTCTaGAAATACAGGTTCACGATCTTGTTGCTTATTCCC | + |
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Preference number: 3 (lower is better) Translates to: ILQFLYCKPQFF*KYRFTILLLIP Trigger: GGGAATAAGCAACAAGATCGTGAACCTGTATTTTCAGAAGAACTGGGGCTTGCAATAGAGAAACTGAAGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR GCA 72 bp | CTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTaGAGTGTGAATCCAACAACTCAAGATCAACTCATC | + |
|
Preference number: 3 (lower is better) Translates to: LNSFKINSSQSP*SVNPTTQDQLI Trigger: GATGAGTTGATCTTGAGTTGTTGGATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| 3UTR-3UTR CAA 90 bp | AGTGTGAATCCAACAACTCAAGATCAACTCATCACTTCCCAAAGTCCCTGCAGTAATTCACTCCAAATATaGGACTGGCAGAATAGACTT | + |
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Preference number: 3 (lower is better) Translates to: SVNPTTQDQLITSQSPCSNSLQI*DWQNRL Trigger: AAGTCTATTCTGCCAGTCCAATATTTGGAGTGAATT...ACTGCAGGGACTTTGGGAAGTGATGAGTTGATCTTGAGTTGTTGGATTCACACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| CDS-3UTR TCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATAGTGGCTGTGGCTGCTaGGAGCTTTCTATGACAAGC | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNSGCGC*ELSMTS Trigger: GCTTGTCATAGAAAGCTCTCAGCAGCCACAGCCACT...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127806.2 |
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| CDS-3UTR TCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATCTCAGCTGCTTGTTCTaGATGACTGCACTTCTCAAC | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNLSCLF*MTALLN Trigger: GTTGAGAAGTGCAGTCATTCAGAACAAGCAGCTGAG...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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| CDS-3UTR TCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATTATCCTCCACTCTGCTaGGAGCTTTCTATGACAAGC | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNYPPLC*ELSMTS Trigger: GCTTGTCATAGAAAGCTCTCAGCAGAGTGGAGGATA...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074963.9 |
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| CDS-3UTR GCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATACTTCCCAAAGTCCCTaGAGTGTGAATCCATCCTTC | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNTSQSP*SVNPSF Trigger: GAAGGATGGATTCACACTGCAGGGACTTTGGGAAGT...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 ENSMUST00000127806.2 |
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| CDS-3UTR CCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATGTTCCTAAATTCCCCTaGTCGCTGGACAGATTCCAT | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNVPKFP*SLDRFH Trigger: ATGGAATCTGTCCAGCGACCAGGGGAATTTAGGAAC...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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| CDS-3UTR CCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATAGCTTCAAGTGGCTGTaGCTGCTGAGAGCTTTCTAT | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNSFKWL*LLRAFY Trigger: ATAGAAAGCTCTCAGCAGCCACAGCCACTTGAAGCT...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127806.2 |
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| CDS-3UTR TCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATGCTGAGAGCTTTCTATaGCAAGCGCCAAACCAAATT | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNAESFL*QAPNQI Trigger: AATTTGGTTTGGCGCTTGTCATAGAAAGCTCTCAGC...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000127806.2 |
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| CDS-3UTR TCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATAAGCCCCAGTTCTTCTaGAAATACAGGTTCACGATC | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNKPQFF*KYRFTI Trigger: GATCGTGAACCTGTATTTTCAGAAGAACTGGGGCTT...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 ENSMUST00000127806.2 |
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| CDS-3UTR TCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATAAAGTCCCTGCAGTGTaGATCCATCCTTCAGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNKVPAV*IHPSVS Trigger: AGAAACTGAAGGATGGATTCACACTGCAGGGACTTT...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 ENSMUST00000127806.2 |
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| CDS-3UTR CCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATAGTCAGAGCTTCAAGTaGCTGTGGCTTTTCTTCCAT | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNSQSFK*LWLFFH Trigger: ATGGAAGAAAAGCCACAGCCACTTGAAGCTCTGACT...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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| CDS-3UTR CCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATACAAAAGCATCCGTGTaGTCATCAGAGTCTATTTCC | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNTKASV*SSESIS Trigger: GGAAATAGACTCTGATGACCACACGGATGCTTTTGT...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 ENSMUST00000127806.2 |
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| 3UTR CAA 72 bp | ATCCGTGTGGTCATCAGAGTCTATTTCCACATCATCTaGAATTTGTTCAACAGTCAGAGCTTCAAGTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: IRVVIRVYFHII*NLFNSQSFKWL Trigger: CAGCCACTTGAAGCTCTGACTGTTGAACAAATTCAAGATGATGTGGAAATAGACTCTGATGACCACACGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| CDS-3UTR GCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATATATGCTCTGTGCACTaGGATCACAGAAGTAAAAAG | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNICSVH*DHRSKK Trigger: CTTTTTACTTCTGTGATCGCAGTGCACAGAGCATAT...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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| CDS-3UTR GCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATTTTAGAAGTTTCATATaGTCTGTGCACTGCGATCAC | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNFRSFI*SVHCDH Trigger: GTGATCGCAGTGCACAGAGCATATGAAACTTCTAAA...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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| CDS-3UTR GCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATGGTTCACGATCTTGTTaGTTATTCCCATCAGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNGSRSC*LFPSAK Trigger: TTTTGCTGATGGGAATAAGCAACAAGATCGTGAACC...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 ENSMUST00000127806.2 |
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| CDS-3UTR CCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATAGCTTCAAGTGGCTGTaGCTTTTCTTCCATTTCATA | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNSFKWL*LFFHFI Trigger: TATGAAATGGAAGAAAAGCCACAGCCACTTGAAGCT...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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| CDS-3UTR GCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATCTTGTTCTGAATGACTaGACTTCTCAACTTAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNLVLND*TSQLKV Trigger: GACTTTAAGTTGAGAAGTGCAGTCATTCAGAACAAG...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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| CDS-3UTR GCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATTCATTCATATTGGCATaGCACACAATTCTCACATTG | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNSFILA*HTILTL Trigger: CAATGTGAGAATTGTGTGGCATGCCAATATGAATGA...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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| CDS-3UTR CCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATAACTGTCATTCATATTaGCATGCCACACAATTCTCA | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNNCHSY*HATQFS Trigger: TGAGAATTGTGTGGCATGCCAATATGAATGACAGTT...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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| CDS-3UTR CCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATCTCCAAATATTGGACTaGCAGAATAGACTTTGTGAA | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNLQILD*QNRLCE Trigger: TTCACAAAGTCTATTCTGCCAGTCCAATATTTGGAG...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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| CDS-3UTR CCA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATATTCACTCCAAATATTaGACTGGCAGAATAGACTTT | + |
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Preference number: 4 (lower is better) Translates to: VQLNSFKINSSQSPCSVNIHSKY*TGRIDF Trigger: AAAGTCTATTCTGCCAGTCCAATATTTGGAGTGAAT...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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| CDS-3UTR CAA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATGGACTTCCCCGGGTCTaGTTTTCATCTGTTGCGAGG | + |
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Preference number: 5 (lower is better) Translates to: VQLNSFKINSSQSPCSVNGLPRV*FSSVAR Trigger: CCTCGCAACAGATGAAAACAAGACCCGGGGAAGTCC...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 ENSMUST00000134659.8 |
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| CDS-3UTR CAA 90 bp | AAATACGCCACAAAAGCATCCGTGTGGTCATCAGAGTCTATTTCCACATCATCTGGACTTCCCCGGGTCTaGTTTTCATCTGTTGCGAGG | + |
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Preference number: 5 (lower is better) Translates to: KYATKASVWSSESISTSSGLPRV*FSSVAR Trigger: CCTCGCAACAGATGAAAACAAGACCCGGGGAAGTCC...AGATGATGTGGAAATAGACTCTGATGACCACACGGATGCTTTTGTGGCGTATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| CDS-3UTR CAA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATCCTTCAGTTTCTCTATaGCAAGCCCCAGTTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: VQLNSFKINSSQSPCSVNPSVSL*QAPVLL Trigger: CAGAAGAACTGGGGCTTGCAATAGAGAAACTGAAGG...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 ENSMUST00000127806.2 |
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| CDS-3UTR CAA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATTACAGGTTCACGATCTaGTTGCTTATTCCCATCAGC | + |
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Preference number: 5 (lower is better) Translates to: VQLNSFKINSSQSPCSVNYRFTI*LLIPIS Trigger: GCTGATGGGAATAAGCAACAAGATCGTGAACCTGTA...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 ENSMUST00000127806.2 |
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| CDS-3UTR CAA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATCTACCTCTGTCTCCATaGTTTCCTTTTGTGTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: VQLNSFKINSSQSPCSVNLPLSP*FPFVSS Trigger: TGAAGACACAAAAGGAAACAATGGAGACAGAGGTAG...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 ENSMUST00000134659.8 |
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| CDS-3UTR CAA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATAGGTTCACGATCTTGTaGCTTATTCCCATCAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: VQLNSFKINSSQSPCSVNRFTIL*LIPISK Trigger: TTTGCTGATGGGAATAAGCAACAAGATCGTGAACCT...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 ENSMUST00000127806.2 |
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| CDS-3UTR CAA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATGTATCCTCCACTAATTaGCAGATATGGTATGCTGAC | + |
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Preference number: 5 (lower is better) Translates to: VQLNSFKINSSQSPCSVNVSSTN*QIWYAD Trigger: GTCAGCATACCATATCTGCAAATTAGTGGAGGATAC...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112286.9 |
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| CDS-3UTR CAA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATAAACTGTCATTCATATaGGCATGCCACACAATTCTC | + |
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Preference number: 5 (lower is better) Translates to: VQLNSFKINSSQSPCSVNKLSFI*ACHTIL Trigger: GAGAATTGTGTGGCATGCCAATATGAATGACAGTTT...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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| CDS-3UTR CAA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATCACATCATCTTGAATTaGTTCAACAGTCAGAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: VQLNSFKINSSQSPCSVNHIILN*FNSQSF Trigger: GAAGCTCTGACTGTTGAACAAATTCAAGATGATGTG...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 ENSMUST00000127806.2 |
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| CDS-3UTR CAA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATCTCCATTGTTTCCTTTaGTGTCTTCAATGGAATCTA | + |
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Preference number: 5 (lower is better) Translates to: VQLNSFKINSSQSPCSVNLHCFL*CLQWNL Trigger: TAGATTCCATTGAAGACACAAAAGGAAACAATGGAG...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 ENSMUST00000134659.8 |
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| CDS-3UTR CAA 90 bp | GTCCAGCTCAACTCATTCAAGATTAACTCATCCCAAAGTCCCTGCAGTGTGAATAATTCACTCCAAATATaGGACTGGCAGAATAGACTT | + |
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Preference number: 5 (lower is better) Translates to: VQLNSFKINSSQSPCSVNNSLQI*DWQNRL Trigger: AAGTCTATTCTGCCAGTCCAATATTTGGAGTGAATT...ATTCACACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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| CDS-3UTR CAA 90 bp | GGTATGCTGACATTAAAACTGTCATTCATATTGGCATGCCACACAATTCTCACACTCCATTGTTTCCTTTaGTGTCTTCAATGGAATCTA | + |
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Preference number: 5 (lower is better) Translates to: GMLTLKLSFILACHTILTLHCFL*CLQWNL Trigger: TAGATTCCATTGAAGACACAAAAGGAAACAATGGAG...TGTGAGAATTGTGTGGCATGCCAATATGAATGACAGTTTTAATGTCAGCATACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134659.8 |
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| CDS CAA 90 bp | AGCATCCGTGTGGTCATCAGAGTCTATTTCCACATCATCTTGAATTaGTTCAACAGTCAGAGCTTCAAGTGGCTGTGGCTGCTGAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: SIRVVIRVYFHIILN*FNSQSFKWLWLLRA Trigger: AGCTCTCAGCAGCCACAGCCACTTGAAGCTCTGACTGTTGAACAAATTCAAGATGATGTGGAAATAGACTCTGATGACCACACGGATGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127806.2 |
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| CDS CAA 90 bp | CACAAAAGCATCCGTGTGGTCATCAGAGTCTATTTCCACATCATCTaGAATTTGTTCAACAGTCAGAGCTTCAAGTGGCTGTGGCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: HKSIRVVIRVYFHII*NLFNSQSFKWLWLL Trigger: CAGCAGCCACAGCCACTTGAAGCTCTGACTGTTGAACAAATTCAAGATGATGTGGAAATAGACTCTGATGACCACACGGATGCTTTTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127806.2 |
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| CDS GCA 72 bp | CCAATAGAAAGATTGACTCTGGGCAATGCCAAGGAATaGCAGATGATCCTTAAGTTTGTGACTAAGAGTCTA | + |
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Preference number: 6 (lower is better) Translates to: PIERLTLGNAKE*QMILKFVTKSL Trigger: TAGACTCTTAGTCACAAACTTAAGGATCATCTGGCATTCCTTGGCATTGCCCAGAGTCAATCTTTCTATTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 ENSMUST00000134659.8 |
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| CDS CAA 90 bp | AAACCGGGTAGTGTTGCATTTTGTCAATATATAAAGAGCTTCGGTTaGGCCTCGCAGTTTAGAGTTAGCAGTTCTTGTTGTGATATTCAA | + |
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Preference number: 6 (lower is better) Translates to: KPGSVAFCQYIKSFG*ASQFRVSSSCCDIQ Trigger: TTGAATATCACAACAAGAACTGCTAACTCTAAACTGCGAGGCCAAACCGAAGCTCTTTATATATTGACAAAATGCAACACTACCCGGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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| CDS CAA 72 bp | AGTGTTGCATTTTGTCAATATATAAAGAGCTTCGGTTaGGCCTCGCAGTTTAGAGTTAGCAGTTCTTGTTGT | + |
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Preference number: 6 (lower is better) Translates to: SVAFCQYIKSFG*ASQFRVSSSCC Trigger: ACAACAAGAACTGCTAACTCTAAACTGCGAGGCCAAACCGAAGCTCTTTATATATTGACAAAATGCAACACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074963.9 ENSMUST00000112286.9 |
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