Pregenerated sensors for BBS4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025235Ensembl transcript IDs: ENSMUST00000026265.8, ENSMUST00000217367.2
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CATGCGAGGCCTCACGTCTATGTAGCATGCCTTCGCCCTTGTTCCTaGATGATGGGGCCAGCCAAGAGCTGCATAGGCCTTAGGCTCCTT | + |
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Preference number: 1 (lower is better) Translates to: HARPHVYVACLRPCS*MMGPAKSCIGLRLL Trigger: AAGGAGCCTAAGGCCTATGCAGCTCTTGGCTGGCCCCATCATCCAGGAACAAGGGCGAAGGCATGCTACATAGACGTGAGGCCTCGCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| 3UTR GCA 90 bp | GCTAACTCTTGGAGTATACATGCGAGGCCTCACGTCTATGTAGCATaGCTTCGCCCTTGTTCCTGGATGATGGGGCCAGCCAAGAGCTGC | + |
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Preference number: 1 (lower is better) Translates to: ANSWSIHARPHVYVA*LRPCSWMMGPAKSC Trigger: GCAGCTCTTGGCTGGCCCCATCATCCAGGAACAAGGGCGAAGGCATGCTACATAGACGTGAGGCCTCGCATGTATACTCCAAGAGTTAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| 3UTR-3UTR CCA 90 bp | ACTTCTATCTTCCCACAGTCAGTTAAAATGAGGCTTCATTACCACAGCCTACTGCTTCGCCCTTGTTCCTaGATGATGGGGCCAGCCAAG | + |
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Preference number: 2 (lower is better) Translates to: TSIFPQSVKMRLHYHSLLLRPCS*MMGPAK Trigger: CTTGGCTGGCCCCATCATCCAGGAACAAGGGCGAAG...CAGTAGGCTGTGGTAATGAAGCCTCATTTTAACTGACTGTGGGAAGATAGAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| 3UTR-3UTR TCA 90 bp | CAAAGGCTGCTAATGGGTTGTGAGAGCGTTTGTCAGCATTCATCATTGATTGTCTCTGGCTCTAAACTCTaGCCTCTCTTAAGAATGGAG | + |
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Preference number: 2 (lower is better) Translates to: QRLLMGCESVCQHSSLIVSGSKL*PLLRME Trigger: CTCCATTCTTAAGAGAGGTCAGAGTTTAGAGCCAGA...GACAATCAATGATGAATGCTGACAAACGCTCTCACAACCCATTAGCAGCCTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| 3UTR GCA 72 bp | TGGAGTATACATGCGAGGCCTCACGTCTATGTAGCATaGCTTCGCCCTTGTTCCTGGATGATGGGGCCAGCC | + |
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Preference number: 3 (lower is better) Translates to: WSIHARPHVYVA*LRPCSWMMGPA Trigger: GGCTGGCCCCATCATCCAGGAACAAGGGCGAAGGCATGCTACATAGACGTGAGGCCTCGCATGTATACTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| 3UTR CCA 72 bp | CCTCACGTCTATGTAGCATGCCTTCGCCCTTGTTCCTaGATGATGGGGCCAGCCAAGAGCTGCATAGGCCTT | + |
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Preference number: 3 (lower is better) Translates to: PHVYVACLRPCS*MMGPAKSCIGL Trigger: AAGGCCTATGCAGCTCTTGGCTGGCCCCATCATCCAGGAACAAGGGCGAAGGCATGCTACATAGACGTGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| 3UTR GCA 72 bp | TCACAACACACCCTGGGTTCTGTTTTAATTCTGCAGTaGCCACCCAGGGACGAAGTGTTAGCCTCCATCTGC | + |
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Preference number: 3 (lower is better) Translates to: SQHTLGSVLILQ*PPRDEVLASIC Trigger: GCAGATGGAGGCTAACACTTCGTCCCTGGGTGGGCACTGCAGAATTAAAACAGAACCCAGGGTGTGTTGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR GCA 90 bp | CCTTGTTCCTGGATGATGGGGCCAGCCAAGAGCTGCATAGGCCTTAGGCTCCTTTTTGGTCCAGACCAGTaGCTCTCCCACCTGAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: PCSWMMGPAKSCIGLRLLFGPDQ*LSHLKG Trigger: GCCCTTCAGGTGGGAGAGGCACTGGTCTGGACCAAA...AAGGAGCCTAAGGCCTATGCAGCTCTTGGCTGGCCCCATCATCCAGGAACAAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | CCTTGTTCCTGGATGATGGGGCCAGCCAAGAGCTGCATAGGCCTTAGGCTCCTTGACTTGCTTCCACAGTaGGCTCTGGCTCTGGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: PCSWMMGPAKSCIGLRLLDLLPQ*ALALAP Trigger: TGGAGCCAGAGCCAGAGCCCACTGTGGAAGCAAGTC...AAGGAGCCTAAGGCCTATGCAGCTCTTGGCTGGCCCCATCATCCAGGAACAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| 3UTR CAA 72 bp | TGCGAGGCCTCACGTCTATGTAGCATGCCTTCGCCCTaGTTCCTGGATGATGGGGCCAGCCAAGAGCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: CEASRLCSMPSP*FLDDGASQELH Trigger: ATGCAGCTCTTGGCTGGCCCCATCATCCAGGAACAAGGGCGAAGGCATGCTACATAGACGTGAGGCCTCGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR TCA 90 bp | GCCTCACGTCTATGTAGCATGCCTTCGCCCTTGTTCCTGGATGATGGGGCCAGCCAGCACACTGTGGGCTaGGAACAGCACATGTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: ASRLCSMPSPLFLDDGASQHTVG*EQHMSE Trigger: TTCAGACATGTGCTGTTCTCAGCCCACAGTGTGCTG...GCTGGCCCCATCATCCAGGAACAAGGGCGAAGGCATGCTACATAGACGTGAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR GCA 90 bp | AGGCCTCACGTCTATGTAGCATGCCTTCGCCCTTGTTCCTGGATGATGGGGCCAAGCTGGAGGGCACTGTaGAGTTGGTCTTGTGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: RPHVYVACLRPCSWMMGPSWRAL*SWSCAL Trigger: CAAGGCACAAGACCAACTGCACAGTGCCCTCCAGCT...TGGCCCCATCATCCAGGAACAAGGGCGAAGGCATGCTACATAGACGTGAGGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | GCCTCACGTCTATGTAGCATGCCTTCGCCCTTGTTCCTGGATGATGGGGCCAGCGTCCTAGAGCTTGAATaGAACCCAGAGGCTGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: ASRLCSMPSPLFLDDGASVLELE*NPEAAG Trigger: TCCAGCAGCCTCTGGGTTCCATTCAAGCTCTAGGAC...GCTGGCCCCATCATCCAGGAACAAGGGCGAAGGCATGCTACATAGACGTGAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR TCA 90 bp | GCCTCACGTCTATGTAGCATGCCTTCGCCCTTGTTCCTGGATGATGGGGCCAGCACATCAAAGTCCCCATaGGTCTGCATCATGCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: ASRLCSMPSPLFLDDGASTSKSP*VCIMLP Trigger: AGGCAGCATGATGCAGACTCATGGGGACTTTGATGT...GCTGGCCCCATCATCCAGGAACAAGGGCGAAGGCATGCTACATAGACGTGAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | GCCTCACGTCTATGTAGCATGCCTTCGCCCTTGTTCCTGGATGATGGGGCCAGCTGCTGCATAGTCAAATaGACAAGGCCCAGGTTGTAC | + |
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Preference number: 4 (lower is better) Translates to: ASRLCSMPSPLFLDDGASCCIVK*TRPRLY Trigger: GTACAACCTGGGCCTTGTCCATTTGACTATGCAGCA...GCTGGCCCCATCATCCAGGAACAAGGGCGAAGGCATGCTACATAGACGTGAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR GCA 90 bp | CCTTGTTCCTGGATGATGGGGCCAGCCAAGAGCTGCATAGGCCTTAGGCTCCTTTTATCCAGGTCTCCCTaGAGTAAATGGATCTTCCCC | + |
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Preference number: 4 (lower is better) Translates to: PCSWMMGPAKSCIGLRLLLSRSP*SKWIFP Trigger: GGGGAAGATCCATTTACTGCAGGGAGACCTGGATAA...AAGGAGCCTAAGGCCTATGCAGCTCTTGGCTGGCCCCATCATCCAGGAACAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | CCTTCTATATGGTCTCACTTAAGAGACCCCCTACTCCAGGGTCATCCTCGGTTTGGTGGCTTTGGGAGCTaGGCTCCTACAGCACCTGAA | + |
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Preference number: 4 (lower is better) Translates to: PSIWSHLRDPLLQGHPRFGGFGS*APTAPE Trigger: TTCAGGTGCTGTAGGAGCCCAGCTCCCAAAGCCACC...AAACCGAGGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGACCATATAGAAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR TCA 90 bp | TGTTTTAATTCTGCAGTGCCCACCCAGGGACGAAGTGTTAGCCTCCATCTGCCTATCTGGCCACCTGCTTaGGATTATCAGCACACTGTG | + |
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Preference number: 4 (lower is better) Translates to: CFNSAVPTQGRSVSLHLPIWPPA*DYQHTV Trigger: CACAGTGTGCTGATAATCTCAAGCAGGTGGCCAGAT...AGGCAGATGGAGGCTAACACTTCGTCCCTGGGTGGGCACTGCAGAATTAAAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR TCA 90 bp | GTGGAGACTTCTATCTTCCCACAGTCAGTTAAAATGAGGCTTCATTACCACAGCTGGCTCCAGTGGCAGTaGTGGTGGCTTTGGGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: VETSIFPQSVKMRLHYHSWLQWQ*WWLWEL Trigger: CAGCTCCCAAAGCCACCATCACTGCCACTGGAGCCA...GCTGTGGTAATGAAGCCTCATTTTAACTGACTGTGGGAAGATAGAAGTCTCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR TCA 90 bp | ATGACCACCTTCTATATGGTCTCACTTAAGAGACCCCCTACTCCAGGGTCATCCGGCTCCTACAGCACCTaGAAGGATCTTTCTGTATGC | + |
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Preference number: 4 (lower is better) Translates to: MTTFYMVSLKRPPTPGSSGSYST*KDLSVC Trigger: GCATACAGAAAGATCCTTTCAGGTGCTGTAGGAGCC...GGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGACCATATAGAAGGTGGTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR GCA 90 bp | GCCTCACGTCTATGTAGCATGCCTTCGCCCTTGTTCCTGGATGATGGGGCCAGCTTGAGATTCAACAGATaGAGGAACCTGAGTTTTCAT | + |
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Preference number: 4 (lower is better) Translates to: ASRLCSMPSPLFLDDGASLRFNR*RNLSFH Trigger: ATGAAAACTCAGGTTCCTGCATCTGTTGAATCTCAA...GCTGGCCCCATCATCCAGGAACAAGGGCGAAGGCATGCTACATAGACGTGAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR GCA 90 bp | TCTCACTTAAGAGACCCCCTACTCCAGGGTCATCCTCGGTTTTTCCTGTTTGTTCTGCATCATGCTGCCTaGTGCCAAGATGGCCTTGTA | + |
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Preference number: 4 (lower is better) Translates to: SHLRDPLLQGHPRFFLFVLHHAA*CQDGLV Trigger: TACAAGGCCATCTTGGCAGCAGGCAGCATGATGCAG...AACAAACAGGAAAAACCGAGGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | TCTCACTTAAGAGACCCCCTACTCCAGGGTCATCCTCGGTTTTTCCTGTTTGTTTCCCCCATCTTTGGCTaGAAGTTGATGGCTGCACTG | + |
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Preference number: 4 (lower is better) Translates to: SHLRDPLLQGHPRFFLFVSPIFG*KLMAAL Trigger: CAGTGCAGCCATCAACTTCCAGCCAAAGATGGGGGA...AACAAACAGGAAAAACCGAGGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR TCA 90 bp | CCTTCTATATGGTCTCACTTAAGAGACCCCCTACTCCAGGGTCATCCTCGGTTTCCTGAAGCTGTTCTTTaGTCACAGCCTTGCAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: PSIWSHLRDPLLQGHPRFPEAVL*SQPCKL Trigger: AAGCTTGCAAGGCTGTGATCAAAGAACAGCTTCAGG...AAACCGAGGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGACCATATAGAAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR TCA 90 bp | CCTTCTATATGGTCTCACTTAAGAGACCCCCTACTCCAGGGTCATCCTCGGTTTTTGTCTTGGGATCTTTaGCTGGTTTGGTCCAGACCA | + |
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Preference number: 4 (lower is better) Translates to: PSIWSHLRDPLLQGHPRFLSWDL*LVWSRP Trigger: TGGTCTGGACCAAACCAGTCAAAGATCCCAAGACAA...AAACCGAGGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGACCATATAGAAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | TGTTTTAATTCTGCAGTGCCCACCCAGGGACGAAGTGTTAGCCTCCATCTGCCTAAGTGGAGGACTTTCTaGAATAGCACAGGCTACAAC | + |
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Preference number: 4 (lower is better) Translates to: CFNSAVPTQGRSVSLHLPKWRTF*NSTGYN Trigger: GTTGTAGCCTGTGCTATTCCAGAAAGTCCTCCACTT...AGGCAGATGGAGGCTAACACTTCGTCCCTGGGTGGGCACTGCAGAATTAAAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | GTTCTTAATACAAGGTTTGTGTTTCCAGTGGAGACTTCTATCTTCCCACAGTCATTCCACAGTGGGCTCTaGCTCTGGCTCCAGTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: VLNTRFVFPVETSIFPQSFHSGL*LWLQWQ Trigger: CTGCCACTGGAGCCAGAGCCAGAGCCCACTGTGGAA...TGACTGTGGGAAGATAGAAGTCTCCACTGGAAACACAAACCTTGTATTAAGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR TCA 90 bp | GTTCTTAATACAAGGTTTGTGTTTCCAGTGGAGACTTCTATCTTCCCACAGTCATCCATCTCCTGGTACTaGGCCAGGGCGCTCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: VLNTRFVFPVETSIFPQSSISWY*ARALFF Trigger: GAAGAAGAGCGCCCTGGCTCAGTACCAGGAGATGGA...TGACTGTGGGAAGATAGAAGTCTCCACTGGAAACACAAACCTTGTATTAAGAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | ATGACCACCTTCTATATGGTCTCACTTAAGAGACCCCCTACTCCAGGGTCATCCTGTTCAAATGCCTTCTaGTACACACCAAGCTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: MTTFYMVSLKRPPTPGSSCSNAF*YTPSCK Trigger: CTTGCAGCTTGGTGTGTACCAGAAGGCATTTGAACA...GGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGACCATATAGAAGGTGGTCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | TCTCACTTAAGAGACCCCCTACTCCAGGGTCATCCTCGGTTTTTCCTGTTTGTTCTATATCTTCCAGGTTaGTCAGAGCCACAGCCAAGA | + |
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Preference number: 4 (lower is better) Translates to: SHLRDPLLQGHPRFFLFVLYLPG*SEPQPR Trigger: TCTTGGCTGTGGCTCTGACCAACCTGGAAGATATAG...AACAAACAGGAAAAACCGAGGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | TCTCACTTAAGAGACCCCCTACTCCAGGGTCATCCTCGGTTTTTCCTGTTTGTTCTCTTCTTCTCACCCTaGTTATACAGCAGCACAGCA | + |
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Preference number: 4 (lower is better) Translates to: SHLRDPLLQGHPRFFLFVLFFSP*LYSSTA Trigger: TGCTGTGCTGCTGTATAACCAGGGTGAGAAGAAGAG...AACAAACAGGAAAAACCGAGGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | GTGGAGACTTCTATCTTCCCACAGTCAGTTAAAATGAGGCTTCATTACCACAGCGAACCCAGAGGCTGCTaGAGAGTAGCAGATTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: VETSIFPQSVKMRLHYHSEPRGC*RVADLL Trigger: CAGCAAATCTGCTACTCTCCAGCAGCCTCTGGGTTC...GCTGTGGTAATGAAGCCTCATTTTAACTGACTGTGGGAAGATAGAAGTCTCCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR TCA 90 bp | TCTCACTTAAGAGACCCCCTACTCCAGGGTCATCCTCGGTTTTTCCTGTTTGTTGAGAAAATGGAATGCTaGTGCATACTGCTGCATAGT | + |
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Preference number: 4 (lower is better) Translates to: SHLRDPLLQGHPRFFLFVEKMEC*CILLHS Trigger: ACTATGCAGCAGTATGCATCAGCATTCCATTTTCTC...AACAAACAGGAAAAACCGAGGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR GCA 90 bp | CCTTCTATATGGTCTCACTTAAGAGACCCCCTACTCCAGGGTCATCCTCGGTTTAATGCTGATGCATACTaGTGCATAGTCAAATGGACA | + |
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Preference number: 4 (lower is better) Translates to: PSIWSHLRDPLLQGHPRFNADAY*CIVKWT Trigger: TGTCCATTTGACTATGCAGCAGTATGCATCAGCATT...AAACCGAGGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGACCATATAGAAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | TGTTTTAATTCTGCAGTGCCCACCCAGGGACGAAGTGTTAGCCTCCATCTGCCTCATTATATACTTCAGTaGCAGCTTTGTGTTTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: CFNSAVPTQGRSVSLHLPHYILQ*QLCVFP Trigger: TGGGAAAACACAAAGCTGCCACTGAAGTATATAATG...AGGCAGATGGAGGCTAACACTTCGTCCCTGGGTGGGCACTGCAGAATTAAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR GCA 90 bp | CAAAGGCTGCTAATGGGTTGTGAGAGCGTTTGTCAGCATTCATCATTGATTGTCAAAGATCTGGCCACCTaGTTGAGATTATCAGCACAC | + |
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Preference number: 4 (lower is better) Translates to: QRLLMGCESVCQHSSLIVKDLAT*LRLSAH Trigger: GTGTGCTGATAATCTCAAGCAGGTGGCCAGATCTTT...GACAATCAATGATGAATGCTGACAAACGCTCTCACAACCCATTAGCAGCCTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR GCA 90 bp | AAGCCCTCTTTAACTAGGTTCTTAATACAAGGTTTGTGTTTCCAGTGGAGACTTCATGAGTCTGCATCATaGTGCCTGCTGCCAAGATGG | + |
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Preference number: 4 (lower is better) Translates to: KPSLTRFLIQGLCFQWRLHESAS*CLLPRW Trigger: CCATCTTGGCAGCAGGCAGCATGATGCAGACTCATG...AAGTCTCCACTGGAAACACAAACCTTGTATTAAGAACCTAGTTAAAGAGGGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | CAAAGGCTGCTAATGGGTTGTGAGAGCGTTTGTCAGCATTCATCATTGATTGTCATTATCAGCACACTGTaGGCTGAGAACAGCACATGT | + |
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Preference number: 4 (lower is better) Translates to: QRLLMGCESVCQHSSLIVIISTL*AENSTC Trigger: ACATGTGCTGTTCTCAGCCCACAGTGTGCTGATAAT...GACAATCAATGATGAATGCTGACAAACGCTCTCACAACCCATTAGCAGCCTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR GCA 90 bp | CCTCTCTTAAGAATGGAGATAAGGACTTGTTTTAGAGTCTCTTTGGGCAAATATTGCTTCTGTTGGACTTaGTTCCACAGTGGGCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: PLLRMEIRTCFRVSLGKYCFCWT*FHSGLW Trigger: CCAGAGCCCACTGTGGAAGCAAGTCCAACAGAAGCA...ATATTTGCCCAAAGAGACTCTAAAACAAGTCCTTATCTCCATTCTTAAGAGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | CAAAGGCTGCTAATGGGTTGTGAGAGCGTTTGTCAGCATTCATCATTGATTGTCAGTTCTAGGGATTCTTaGATATTTCCTTCCAGGCGA | + |
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Preference number: 4 (lower is better) Translates to: QRLLMGCESVCQHSSLIVSSRDS*IFPSRR Trigger: TCGCCTGGAAGGAAATATCCAAGAATCCCTAGAACT...GACAATCAATGATGAATGCTGACAAACGCTCTCACAACCCATTAGCAGCCTTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | AAGCCCTCTTTAACTAGGTTCTTAATACAAGGTTTGTGTTTCCAGTGGAGACTTTCATGCTTGTTAAGCTaGAGGGCACTGTGCAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: KPSLTRFLIQGLCFQWRLSCLLS*RALCSW Trigger: CCAACTGCACAGTGCCCTCCAGCTTAACAAGCATGA...AAGTCTCCACTGGAAACACAAACCTTGTATTAAGAACCTAGTTAAAGAGGGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | ACTTCTATCTTCCCACAGTCAGTTAAAATGAGGCTTCATTACCACAGCCTACTGGCTGCACTGAGAAAATaGAATGCTGATGCATACTGC | + |
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Preference number: 4 (lower is better) Translates to: TSIFPQSVKMRLHYHSLLAALRK*NADAYC Trigger: GCAGTATGCATCAGCATTCCATTTTCTCAGTGCAGC...CAGTAGGCTGTGGTAATGAAGCCTCATTTTAACTGACTGTGGGAAGATAGAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | AAGCCCTCTTTAACTAGGTTCTTAATACAAGGTTTGTGTTTCCAGTGGAGACTTCTTGGGATCTTTGACTaGTTTGGTCCAGACCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: KPSLTRFLIQGLCFQWRLLGIFD*FGPDQC Trigger: GCACTGGTCTGGACCAAACCAGTCAAAGATCCCAAG...AAGTCTCCACTGGAAACACAAACCTTGTATTAAGAACCTAGTTAAAGAGGGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| 3UTR CAA 72 bp | GGGAAGCCCTCTTTAACTAGGTTCTTAATACAAGGTTaGTGTTTCCAGTGGAGACTTCTATCTTCCCACAGT | + |
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Preference number: 4 (lower is better) Translates to: GKPSLTRFLIQG*CFQWRLLSSHS Trigger: ACTGTGGGAAGATAGAAGTCTCCACTGGAAACACAAACCTTGTATTAAGAACCTAGTTAAAGAGGGCTTCCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR TCA 90 bp | GTTCTTAATACAAGGTTTGTGTTTCCAGTGGAGACTTCTATCTTCCCACAGTCAAGAACAGCACATGTCTaGAAGAGTTCTAGGGATTCT | + |
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Preference number: 4 (lower is better) Translates to: VLNTRFVFPVETSIFPQSRTAHV*KSSRDS Trigger: AGAATCCCTAGAACTCTTTCAGACATGTGCTGTTCT...TGACTGTGGGAAGATAGAAGTCTCCACTGGAAACACAAACCTTGTATTAAGAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CCA 90 bp | GTGGAGACTTCTATCTTCCCACAGTCAGTTAAAATGAGGCTTCATTACCACAGCCTACATAAGCTCTTCTaGCATTCTCTATATCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: VETSIFPQSVKMRLHYHSLHKLF*HSLYLP Trigger: TGGAAGATATAGAGAATGCCAGAAGAGCTTATGTAG...GCTGTGGTAATGAAGCCTCATTTTAACTGACTGTGGGAAGATAGAAGTCTCCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR GCA 90 bp | CCTCTCTTAAGAATGGAGATAAGGACTTGTTTTAGAGTCTCTTTGGGCAAATATCCCAAGATGTTCAAATaGCTTCTGGTACACACCAAG | + |
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Preference number: 4 (lower is better) Translates to: PLLRMEIRTCFRVSLGKYPKMFK*LLVHTK Trigger: CTTGGTGTGTACCAGAAGGCATTTGAACATCTTGGG...ATATTTGCCCAAAGAGACTCTAAAACAAGTCCTTATCTCCATTCTTAAGAGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS-3UTR GCA 90 bp | CCTCTCTTAAGAATGGAGATAAGGACTTGTTTTAGAGTCTCTTTGGGCAAATATAGGGTCGTAGGTCAGTaGATTCCCAAGATGTTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: PLLRMEIRTCFRVSLGKYRVVGQ*IPKMFK Trigger: TTTGAACATCTTGGGAATGCACTGACCTACGACCCT...ATATTTGCCCAAAGAGACTCTAAAACAAGTCCTTATCTCCATTCTTAAGAGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS-3UTR GCA 90 bp | CCTCTCTTAAGAATGGAGATAAGGACTTGTTTTAGAGTCTCTTTGGGCAAATATGCTGATGCATACTGCTaGATAGTCAAATGGACAAGG | + |
|
Preference number: 4 (lower is better) Translates to: PLLRMEIRTCFRVSLGKYADAYC*IVKWTR Trigger: CCTTGTCCATTTGACTATGCAGCAGTATGCATCAGC...ATATTTGCCCAAAGAGACTCTAAAACAAGTCCTTATCTCCATTCTTAAGAGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS-3UTR TCA 90 bp | GTTCTTAATACAAGGTTTGTGTTTCCAGTGGAGACTTCTATCTTCCCACAGTCATTCAGTATTTTCTGGTaGGAACTCTACTGCTTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: VLNTRFVFPVETSIFPQSFSIFW*ELYCFL Trigger: AAGAAAGCAGTAGAGTTCTCACCAGAAAATACTGAA...TGACTGTGGGAAGATAGAAGTCTCCACTGGAAACACAAACCTTGTATTAAGAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS-3UTR GCA 90 bp | AAGCCCTCTTTAACTAGGTTCTTAATACAAGGTTTGTGTTTCCAGTGGAGACTTCAGGCGAAAAATCAGTaGTTGGACATAGATAGCATA | + |
|
Preference number: 4 (lower is better) Translates to: KPSLTRFLIQGLCFQWRLQAKNQ*LDIDSI Trigger: TATGCTATCTATGTCCAAGCACTGATTTTTCGCCTG...AAGTCTCCACTGGAAACACAAACCTTGTATTAAGAACCTAGTTAAAGAGGGCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS-3UTR CCA 90 bp | CCTCTCTTAAGAATGGAGATAAGGACTTGTTTTAGAGTCTCTTTGGGCAAATATTCTCCCTGCAGTAAATaGATCTTCCCCAACATTATG | + |
|
Preference number: 4 (lower is better) Translates to: PLLRMEIRTCFRVSLGKYSPCSK*IFPNIM Trigger: CATAATGTTGGGGAAGATCCATTTACTGCAGGGAGA...ATATTTGCCCAAAGAGACTCTAAAACAAGTCCTTATCTCCATTCTTAAGAGAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS-3UTR CCA 90 bp | CCTCTCTTAAGAATGGAGATAAGGACTTGTTTTAGAGTCTCTTTGGGCAAATATAATGTTATTCCAAAGTaGAGGACTTTCTGGAATAGC | + |
|
Preference number: 4 (lower is better) Translates to: PLLRMEIRTCFRVSLGKYNVIPK*RTFWNS Trigger: GCTATTCCAGAAAGTCCTCCACTTTGGAATAACATT...ATATTTGCCCAAAGAGACTCTAAAACAAGTCCTTATCTCCATTCTTAAGAGAGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS CCA 90 bp | GGCTCTGGCTCTGGCTCCAGTGGCAGTGATGGTGGCTTTGGGAGCTaGGCTCCTACAGCACCTGAAAGGATCTTTCTGTATGCAGCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: GSGSGSSGSDGGFGS*APTAPERIFLYAAA Trigger: AGCAGCTGCATACAGAAAGATCCTTTCAGGTGCTGTAGGAGCCCAGCTCCCAAAGCCACCATCACTGCCACTGGAGCCAGAGCCAGAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS GCA 90 bp | CCGGTGCTTTGTCTTGGGATCTTTGACTGGTTTGGTCCAGACCAGTaGCTCTCCCACCTGAAGGGCAGCTCCCAACTTCTGAGCCATCTC | + |
|
Preference number: 5 (lower is better) Translates to: PVLCLGIFDWFGPDQ*LSHLKGSSQLLSHL Trigger: GAGATGGCTCAGAAGTTGGGAGCTGCCCTTCAGGTGGGAGAGGCACTGGTCTGGACCAAACCAGTCAAAGATCCCAAGACAAAGCACCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS TCA 90 bp | CAGATTTGCTGCCTGAATTGGTCCGGTGCTTTGTCTTGGGATCTTTaGCTGGTTTGGTCCAGACCAGTGCCTCTCCCACCTGAAGGGCAG | + |
|
Preference number: 5 (lower is better) Translates to: QICCLNWSGALSWDL*LVWSRPVPLPPEGQ Trigger: CTGCCCTTCAGGTGGGAGAGGCACTGGTCTGGACCAAACCAGTCAAAGATCCCAAGACAAAGCACCGGACCAATTCAGGCAGCAAATCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS-3UTR CAA 90 bp | CCTTCTATATGGTCTCACTTAAGAGACCCCCTACTCCAGGGTCATCCTCGGTTTGCAGTGATGGTGGCTTaGGGAGCTGGGCTCCTACAG | + |
|
Preference number: 5 (lower is better) Translates to: PSIWSHLRDPLLQGHPRFAVMVA*GAGLLQ Trigger: CTGTAGGAGCCCAGCTCCCAAAGCCACCATCACTGC...AAACCGAGGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGACCATATAGAAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS GCA 90 bp | AGAGGCTGCTGGAGAGTAGCAGATTTGCTGCCTGAATTGGTCCGGTaGTTTGTCTTGGGATCTTTGACTGGTTTGGTCCAGACCAGTGCC | + |
|
Preference number: 5 (lower is better) Translates to: RGCWRVADLLPELVR*FVLGSLTGLVQTSA Trigger: GGCACTGGTCTGGACCAAACCAGTCAAAGATCCCAAGACAAAGCACCGGACCAATTCAGGCAGCAAATCTGCTACTCTCCAGCAGCCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS-3UTR CAA 90 bp | TGTTTTAATTCTGCAGTGCCCACCCAGGGACGAAGTGTTAGCCTCCATCTGCCTGAGGGCACTGTGCAGTaGGTCTTGTGCCTTGTTGAA | + |
|
Preference number: 5 (lower is better) Translates to: CFNSAVPTQGRSVSLHLPEGTVQ*VLCLVE Trigger: TTCAACAAGGCACAAGACCAACTGCACAGTGCCCTC...AGGCAGATGGAGGCTAACACTTCGTCCCTGGGTGGGCACTGCAGAATTAAAACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS GCA 90 bp | CAGGTCATGCTTGTTAAGCTGGAGGGCACTGTGCAGTTGGTCTTGTaGCTTGTTGAACTGCTTCAGGTAAGTGTAGCACACTCCCAGGTT | + |
|
Preference number: 5 (lower is better) Translates to: QVMLVKLEGTVQLVL*LVELLQVSVAHSQV Trigger: AACCTGGGAGTGTGCTACACTTACCTGAAGCAGTTCAACAAGGCACAAGACCAACTGCACAGTGCCCTCCAGCTTAACAAGCATGACCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS CCA 90 bp | TTTCTTTCTTTTGTTCTGATGCTTCTGTTGGACTTGCTTCCACAGTaGGCTCTGGCTCTGGCTCCAGTGGCAGTGATGGTGGCTTTGGGA | + |
|
Preference number: 5 (lower is better) Translates to: FLSFVLMLLLDLLPQ*ALALAPVAVMVALG Trigger: TCCCAAAGCCACCATCACTGCCACTGGAGCCAGAGCCAGAGCCCACTGTGGAAGCAAGTCCAACAGAAGCATCAGAACAAAAGAAAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CAA 90 bp | CCTTCTATATGGTCTCACTTAAGAGACCCCCTACTCCAGGGTCATCCTCGGTTTGGATCTTTGACTGGTTaGGTCCAGACCAGTGCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: PSIWSHLRDPLLQGHPRFGSLTG*VQTSAS Trigger: AGAGGCACTGGTCTGGACCAAACCAGTCAAAGATCC...AAACCGAGGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGACCATATAGAAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS-3UTR CAA 90 bp | TGTTTTAATTCTGCAGTGCCCACCCAGGGACGAAGTGTTAGCCTCCATCTGCCTGTCCGGTGCTTTGTCTaGGGATCTTTGACTGGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: CFNSAVPTQGRSVSLHLPVRCFV*GSLTGL Trigger: CAAACCAGTCAAAGATCCCAAGACAAAGCACCGGAC...AGGCAGATGGAGGCTAACACTTCGTCCCTGGGTGGGCACTGCAGAATTAAAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS CCA 90 bp | GCACTGAGAAAATGGAATGCTGATGCATACTGCTGCATAGTCAAATaGACAAGGCCCAGGTTGTACAGAATCTTCCAGTCGAAGGGTGCC | + |
|
Preference number: 5 (lower is better) Translates to: ALRKWNADAYCCIVK*TRPRLYRIFQSKGA Trigger: GGCACCCTTCGACTGGAAGATTCTGTACAACCTGGGCCTTGTCCATTTGACTATGCAGCAGTATGCATCAGCATTCCATTTTCTCAGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026265.8 ENSMUST00000217367.2 |
||
| CDS CCA 90 bp | AGTTCCCCCATCTTTGGCTGGAAGTTGATGGCTGCACTGAGAAAATaGAATGCTGATGCATACTGCTGCATAGTCAAATGGACAAGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: SSPIFGWKLMAALRK*NADAYCCIVKWTRP Trigger: GGGCCTTGTCCATTTGACTATGCAGCAGTATGCATCAGCATTCCATTTTCTCAGTGCAGCCATCAACTTCCAGCCAAAGATGGGGGAACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026265.8 ENSMUST00000217367.2 |
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| CDS-3UTR CAA 90 bp | GTGGAGACTTCTATCTTCCCACAGTCAGTTAAAATGAGGCTTCATTACCACAGCTGGACAAGGCCCAGGTaGTACAGAATCTTCCAGTCG | + |
|
Preference number: 5 (lower is better) Translates to: VETSIFPQSVKMRLHYHSWTRPR*YRIFQS Trigger: CGACTGGAAGATTCTGTACAACCTGGGCCTTGTCCA...GCTGTGGTAATGAAGCCTCATTTTAACTGACTGTGGGAAGATAGAAGTCTCCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS TCA 90 bp | CATCTTTGGCTGGAAGTTGATGGCTGCACTGAGAAAATGGAATGCTaGTGCATACTGCTGCATAGTCAAATGGACAAGGCCCAGGTTGTA | + |
|
Preference number: 5 (lower is better) Translates to: HLWLEVDGCTEKMEC*CILLHSQMDKAQVV Trigger: TACAACCTGGGCCTTGTCCATTTGACTATGCAGCAGTATGCATCAGCATTCCATTTTCTCAGTGCAGCCATCAACTTCCAGCCAAAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026265.8 ENSMUST00000217367.2 |
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| CDS CCA 90 bp | AAGGGTTACACTTATCCAGGCGAACAGCTTCTACATAAGCTCTTCTaGCATTCTCTATATCTTCCAGGTTGGTCAGAGCCACAGCCAAGA | + |
|
Preference number: 5 (lower is better) Translates to: KGYTYPGEQLLHKLF*HSLYLPGWSEPQPR Trigger: TCTTGGCTGTGGCTCTGACCAACCTGGAAGATATAGAGAATGCCAGAAGAGCTTATGTAGAAGCTGTTCGCCTGGATAAGTGTAACCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026265.8 ENSMUST00000217367.2 |
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| CDS-3UTR CAA 90 bp | TGTTTTAATTCTGCAGTGCCCACCCAGGGACGAAGTGTTAGCCTCCATCTGCCTGCGAAAAATCAGTGCTaGGACATAGATAGCATATTC | + |
|
Preference number: 5 (lower is better) Translates to: CFNSAVPTQGRSVSLHLPAKNQC*DIDSIF Trigger: GAATATGCTATCTATGTCCAAGCACTGATTTTTCGC...AGGCAGATGGAGGCTAACACTTCGTCCCTGGGTGGGCACTGCAGAATTAAAACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CAA 90 bp | TCTCACTTAAGAGACCCCCTACTCCAGGGTCATCCTCGGTTTTTCCTGTTTGTTGCTACAACTCTGTATTaGGTAAGGGCGACATCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: SHLRDPLLQGHPRFFLFVATTLY*VRATSK Trigger: CTTTGATGTCGCCCTTACCAAATACAGAGTTGTAGC...AACAAACAGGAAAAACCGAGGATGACCCTGGAGTAGGGGGTCTCTTAAGTGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS GCA 90 bp | AAGTTGATGGCTGCACTGAGAAAATGGAATGCTGATGCATACTGCTaGATAGTCAAATGGACAAGGCCCAGGTTGTACAGAATCTTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: KLMAALRKWNADAYC*IVKWTRPRLYRIFQ Trigger: CTGGAAGATTCTGTACAACCTGGGCCTTGTCCATTTGACTATGCAGCAGTATGCATCAGCATTCCATTTTCTCAGTGCAGCCATCAACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026265.8 ENSMUST00000217367.2 |
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| CDS GCA 90 bp | TGGAAGTTGATGGCTGCACTGAGAAAATGGAATGCTGATGCATACTaGTGCATAGTCAAATGGACAAGGCCCAGGTTGTACAGAATCTTC | + |
|
Preference number: 5 (lower is better) Translates to: WKLMAALRKWNADAY*CIVKWTRPRLYRIF Trigger: GAAGATTCTGTACAACCTGGGCCTTGTCCATTTGACTATGCAGCAGTATGCATCAGCATTCCATTTTCTCAGTGCAGCCATCAACTTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026265.8 ENSMUST00000217367.2 |
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| CDS CCA 90 bp | CAGTATTTTCTGGTGAGAACTCTACTGCTTTCTTGTAGATCTCGATaGCTTTATCCAGGTCTCCCTGCAGTAAATGGATCTTCCCCAACA | + |
|
Preference number: 5 (lower is better) Translates to: QYFLVRTLLLSCRSR*LYPGLPAVNGSSPT Trigger: TGTTGGGGAAGATCCATTTACTGCAGGGAGACCTGGATAAAGCCATCGAGATCTACAAGAAAGCAGTAGAGTTCTCACCAGAAAATACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CAA 90 bp | GTTCTTAATACAAGGTTTGTGTTTCCAGTGGAGACTTCTATCTTCCCACAGTCATCTATATCTTCCAGGTaGGTCAGAGCCACAGCCAAG | + |
|
Preference number: 5 (lower is better) Translates to: VLNTRFVFPVETSIFPQSSISSR*VRATAK Trigger: CTTGGCTGTGGCTCTGACCAACCTGGAAGATATAGA...TGACTGTGGGAAGATAGAAGTCTCCACTGGAAACACAAACCTTGTATTAAGAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CAA 90 bp | ACTTCTATCTTCCCACAGTCAGTTAAAATGAGGCTTCATTACCACAGCCTACTGTTTGTCTTGGGATCTTaGACTGGTTTGGTCCAGACC | + |
|
Preference number: 5 (lower is better) Translates to: TSIFPQSVKMRLHYHSLLFVLGS*TGLVQT Trigger: GGTCTGGACCAAACCAGTCAAAGATCCCAAGACAAA...CAGTAGGCTGTGGTAATGAAGCCTCATTTTAACTGACTGTGGGAAGATAGAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS GCA 90 bp | TCCCAGGTTATGGCAGATCTCCCAGTCTTTCTGGTTAAGTTTAGCTaGTTCATTATATACTTCAGTGGCAGCTTTGTGTTTTCCCAGAAG | + |
|
Preference number: 5 (lower is better) Translates to: SQVMADLPVFLVKFS*FIIYFSGSFVFSQK Trigger: CTTCTGGGAAAACACAAAGCTGCCACTGAAGTATATAATGAAGCAGCTAAACTTAACCAGAAAGACTGGGAGATCTGCCATAACCTGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CAA 90 bp | ACTTCTATCTTCCCACAGTCAGTTAAAATGAGGCTTCATTACCACAGCCTACTGACTTCAGTGGCAGCTTaGTGTTTTCCCAGAAGAAAC | + |
|
Preference number: 5 (lower is better) Translates to: TSIFPQSVKMRLHYHSLLTSVAA*CFPRRN Trigger: GTTTCTTCTGGGAAAACACAAAGCTGCCACTGAAGT...CAGTAGGCTGTGGTAATGAAGCCTCATTTTAACTGACTGTGGGAAGATAGAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CAA 90 bp | AAGCCCTCTTTAACTAGGTTCTTAATACAAGGTTTGTGTTTCCAGTGGAGACTTAATTCCAGAGGGCTGTaGTCCTTGAGAAAGTTGACC | + |
|
Preference number: 5 (lower is better) Translates to: KPSLTRFLIQGLCFQWRLNSRGL*SLRKLT Trigger: GGTCAACTTTCTCAAGGACAACAGCCCTCTGGAATT...AAGTCTCCACTGGAAACACAAACCTTGTATTAAGAACCTAGTTAAAGAGGGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CAA 90 bp | ACTTCTATCTTCCCACAGTCAGTTAAAATGAGGCTTCATTACCACAGCCTACTGGCCACATATTTCTTCTaGCCAAAGAAACACATTCCA | + |
|
Preference number: 5 (lower is better) Translates to: TSIFPQSVKMRLHYHSLLATYFF*PKKHIP Trigger: TGGAATGTGTTTCTTTGGCAAGAAGAAATATGTGGC...CAGTAGGCTGTGGTAATGAAGCCTCATTTTAACTGACTGTGGGAAGATAGAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS-3UTR CAA 90 bp | CCTCTCTTAAGAATGGAGATAAGGACTTGTTTTAGAGTCTCTTTGGGCAAATATATCTTTGGCTGGAAGTaGATGGCTGCACTGAGAAAA | + |
|
Preference number: 5 (lower is better) Translates to: PLLRMEIRTCFRVSLGKYIFGWK*MAALRK Trigger: TTTTCTCAGTGCAGCCATCAACTTCCAGCCAAAGAT...ATATTTGCCCAAAGAGACTCTAAAACAAGTCCTTATCTCCATTCTTAAGAGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS GCA 72 bp | TGTCTTGGGATCTTTGACTGGTTTGGTCCAGACCAGTaGCTCTCCCACCTGAAGGGCAGCTCCCAACTTCTG | + |
|
Preference number: 6 (lower is better) Translates to: CLGIFDWFGPDQ*LSHLKGSSQLL Trigger: CAGAAGTTGGGAGCTGCCCTTCAGGTGGGAGAGGCACTGGTCTGGACCAAACCAGTCAAAGATCCCAAGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS TCA 72 bp | TGCCTGAATTGGTCCGGTGCTTTGTCTTGGGATCTTTaGCTGGTTTGGTCCAGACCAGTGCCTCTCCCACCT | + |
|
Preference number: 6 (lower is better) Translates to: CLNWSGALSWDL*LVWSRPVPLPP Trigger: AGGTGGGAGAGGCACTGGTCTGGACCAAACCAGTCAAAGATCCCAAGACAAAGCACCGGACCAATTCAGGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS CAA 90 bp | TGGAGAGTAGCAGATTTGCTGCCTGAATTGGTCCGGTGCTTTGTCTaGGGATCTTTGACTGGTTTGGTCCAGACCAGTGCCTCTCCCACC | + |
|
Preference number: 6 (lower is better) Translates to: WRVADLLPELVRCFV*GSLTGLVQTSASPT Trigger: GGTGGGAGAGGCACTGGTCTGGACCAAACCAGTCAAAGATCCCAAGACAAAGCACCGGACCAATTCAGGCAGCAAATCTGCTACTCTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS TCA 72 bp | ACTCTGTATTTGGTAAGGGCGACATCAAAGTCCCCATaGGTCTGCATCATGCTGCCTGCTGCCAAGATGGCC | + |
|
Preference number: 6 (lower is better) Translates to: TLYLVRATSKSP*VCIMLPAAKMA Trigger: GGCCATCTTGGCAGCAGGCAGCATGATGCAGACTCATGGGGACTTTGATGTCGCCCTTACCAAATACAGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS TCA 72 bp | ACCCAGAGGCTGCTGGAGAGTAGCAGATTTGCTGCCTaGATTGGTCCGGTGCTTTGTCTTGGGATCTTTGAC | + |
|
Preference number: 6 (lower is better) Translates to: TQRLLESSRFAA*IGPVLCLGIFD Trigger: GTCAAAGATCCCAAGACAAAGCACCGGACCAATTCAGGCAGCAAATCTGCTACTCTCCAGCAGCCTCTGGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS CAA 72 bp | GCAGATTTGCTGCCTGAATTGGTCCGGTGCTTTGTCTaGGGATCTTTGACTGGTTTGGTCCAGACCAGTGCC | + |
|
Preference number: 6 (lower is better) Translates to: ADLLPELVRCFV*GSLTGLVQTSA Trigger: GGCACTGGTCTGGACCAAACCAGTCAAAGATCCCAAGACAAAGCACCGGACCAATTCAGGCAGCAAATCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS CAA 72 bp | AGAGGCTGCTGGAGAGTAGCAGATTTGCTGCCTGAATaGGTCCGGTGCTTTGTCTTGGGATCTTTGACTGGT | + |
|
Preference number: 6 (lower is better) Translates to: RGCWRVADLLPE*VRCFVLGSLTG Trigger: ACCAGTCAAAGATCCCAAGACAAAGCACCGGACCAATTCAGGCAGCAAATCTGCTACTCTCCAGCAGCCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS GCA 72 bp | CTTGTTAAGCTGGAGGGCACTGTGCAGTTGGTCTTGTaGCTTGTTGAACTGCTTCAGGTAAGTGTAGCACAC | + |
|
Preference number: 6 (lower is better) Translates to: LVKLEGTVQLVL*LVELLQVSVAH Trigger: GTGTGCTACACTTACCTGAAGCAGTTCAACAAGGCACAAGACCAACTGCACAGTGCCCTCCAGCTTAACAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS GCA 72 bp | CAAGATGGCCTTGTAGTTGGCAGGGTCGTAGGTCAGTaGATTCCCAAGATGTTCAAATGCCTTCTGGTACAC | + |
|
Preference number: 6 (lower is better) Translates to: QDGLVVGRVVGQ*IPKMFKCLLVH Trigger: GTGTACCAGAAGGCATTTGAACATCTTGGGAATGCACTGACCTACGACCCTGCCAACTACAAGGCCATCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS GCA 72 bp | TGGAGAGTAGCAGATTTGCTGCCTGAATTGGTCCGGTaGTTTGTCTTGGGATCTTTGACTGGTTTGGTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: WRVADLLPELVR*FVLGSLTGLVQ Trigger: CTGGACCAAACCAGTCAAAGATCCCAAGACAAAGCACCGGACCAATTCAGGCAGCAAATCTGCTACTCTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS CCA 72 bp | AGCCACAGCCAAGAGCATGTAGAGTTCCCCCATCTTTaGCTGGAAGTTGATGGCTGCACTGAGAAAATGGAA | + |
|
Preference number: 6 (lower is better) Translates to: SHSQEHVEFPHL*LEVDGCTEKME Trigger: TTCCATTTTCTCAGTGCAGCCATCAACTTCCAGCCAAAGATGGGGGAACTCTACATGCTCTTGGCTGTGGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026265.8 ENSMUST00000217367.2 |
||
| CDS GCA 72 bp | AGGGTCGTAGGTCAGTGCATTCCCAAGATGTTCAAATaGCTTCTGGTACACACCAAGCTGCAAGTAGAGCAA | + |
|
Preference number: 6 (lower is better) Translates to: RVVGQCIPKMFK*LLVHTKLQVEQ Trigger: TTGCTCTACTTGCAGCTTGGTGTGTACCAGAAGGCATTTGAACATCTTGGGAATGCACTGACCTACGACCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
||
| CDS TCA 72 bp | CTGGAAGTTGATGGCTGCACTGAGAAAATGGAATGCTaGTGCATACTGCTGCATAGTCAAATGGACAAGGCC | + |
|
Preference number: 6 (lower is better) Translates to: LEVDGCTEKMEC*CILLHSQMDKA Trigger: GGCCTTGTCCATTTGACTATGCAGCAGTATGCATCAGCATTCCATTTTCTCAGTGCAGCCATCAACTTCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026265.8 ENSMUST00000217367.2 |
||
| CDS GCA 72 bp | TTGTGTTTTCCCAGAAGAAACAAAGATCTGGCCACCTaGTTGAGATTATCAGCACACTGTGGGCTGAGAACA | + |
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Preference number: 6 (lower is better) Translates to: LCFPRRNKDLAT*LRLSAHCGLRT Trigger: TGTTCTCAGCCCACAGTGTGCTGATAATCTCAAGCAGGTGGCCAGATCTTTGTTTCTTCTGGGAAAACACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS CCA 72 bp | CTGGTGAGAACTCTACTGCTTTCTTGTAGATCTCGATaGCTTTATCCAGGTCTCCCTGCAGTAAATGGATCT | + |
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Preference number: 6 (lower is better) Translates to: LVRTLLLSCRSR*LYPGLPAVNGS Trigger: AGATCCATTTACTGCAGGGAGACCTGGATAAAGCCATCGAGATCTACAAGAAAGCAGTAGAGTTCTCACCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS CCA 72 bp | AAATGGAATGCTGATGCATACTGCTGCATAGTCAAATaGACAAGGCCCAGGTTGTACAGAATCTTCCAGTCG | + |
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Preference number: 6 (lower is better) Translates to: KWNADAYCCIVK*TRPRLYRIFQS Trigger: CGACTGGAAGATTCTGTACAACCTGGGCCTTGTCCATTTGACTATGCAGCAGTATGCATCAGCATTCCATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026265.8 ENSMUST00000217367.2 |
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| CDS CCA 72 bp | ATCTTTGGCTGGAAGTTGATGGCTGCACTGAGAAAATaGAATGCTGATGCATACTGCTGCATAGTCAAATGG | + |
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Preference number: 6 (lower is better) Translates to: IFGWKLMAALRK*NADAYCCIVKW Trigger: CCATTTGACTATGCAGCAGTATGCATCAGCATTCCATTTTCTCAGTGCAGCCATCAACTTCCAGCCAAAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026265.8 ENSMUST00000217367.2 |
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| CDS CCA 72 bp | CTTGCCAAAGAAACACATTCCAATGTTATTCCAAAGTaGAGGACTTTCTGGAATAGCACAGGCTACAACTCT | + |
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Preference number: 6 (lower is better) Translates to: LAKETHSNVIPK*RTFWNSTGYNS Trigger: AGAGTTGTAGCCTGTGCTATTCCAGAAAGTCCTCCACTTTGGAATAACATTGGAATGTGTTTCTTTGGCAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026265.8 |
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| CDS CAA 72 bp | CGTTTTAGGCAGCTGATAGCTGCCACATATTTCTTCTaGCCAAAGAAACACATTCCAATGTTATTCCAAAGT | + |
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Preference number: 6 (lower is better) Translates to: RFRQLIAATYFF*PKKHIPMLFQS Trigger: ACTTTGGAATAACATTGGAATGTGTTTCTTTGGCAAGAAGAAATATGTGGCAGCTATCAGCTGCCTAAAACG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026265.8 ENSMUST00000217367.2 |
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