Pregenerated sensors for BBS10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035759Ensembl transcript IDs: ENSMUST00000040454.5
Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTAGACAGACTAGCGCAGACCAGAGACAAGGAGACAGATTTAGCCAGTTTTTGTAATGCCTTTGCCCACTaGGCCATTTCTCTGGCCCCA | + |
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Preference number: 2 (lower is better) Translates to: LDRLAQTRDKETDLASFCNAFAH*AISLAP Trigger: TGGGGCCAGAGAAATGGCTCAGTGGGCAAAGGCATT...ACAAAAACTGGCTAAATCTGTCTCCTTGTCTCTGGTCTGCGCTAGTCTGTCTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| 3UTR-3UTR CCA 90 bp | GACAGATTTAGCCAGTTTTTGTTCCATAGAGCTGATACCTGTTGTCTGAATGGTCCTCTCCTTCCACCCTaGGTGATGACCGCAGGCAGT | + |
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Preference number: 2 (lower is better) Translates to: DRFSQFLFHRADTCCLNGPLLPP*VMTAGS Trigger: ACTGCCTGCGGTCATCACCCAGGGTGGAAGGAGAGG...ACCATTCAGACAACAGGTATCAGCTCTATGGAACAAAAACTGGCTAAATCTGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| 3UTR-3UTR CCA 90 bp | AGGACTGGGTTGACTTCAGTCAGCCAGAAGCCTGTTTTAATATTTAGCTTGAGCACTGAGCCATTTCTCTaGCCCCAGACTGAAAGTTCG | + |
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Preference number: 2 (lower is better) Translates to: RTGLTSVSQKPVLIFSLSTEPFL*PQTESS Trigger: CGAACTTTCAGTCTGGGGCCAGAGAAATGGCTCAGT...GCTCAAGCTAAATATTAAAACAGGCTTCTGGCTGACTGAAGTCAACCCAGTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR CCA 90 bp | CACCCTCTCCTTCCACCCTGGGTGATGACCGCAGGCAGTCAGTCAGGTTTGCCAGCAGCACCTCGCCGGTaGGCTTCGTACACAACACTT | + |
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Preference number: 4 (lower is better) Translates to: HPLLPPWVMTAGSQSGLPAAPRR*ASYTTL Trigger: AAGTGTTGTGTACGAAGCCCACCGGCGAGGTGCTGC...TGGCAAACCTGACTGACTGCCTGCGGTCATCACCCAGGGTGGAAGGAGAGGGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR GCA 90 bp | GTGTTTGTCTGCGAACATGTGTGTACAACAAAGGACATGTCTCAGGACTTCACCCGCAGCGGTTCGCGATaGTCTCCAGCACCTCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: VFVCEHVCTTKDMSQDFTRSGSR*SPAPRP Trigger: TGGCCGAGGTGCTGGAGAGCATCGCGAACCGCTGCG...GGTGAAGTCCTGAGACATGTCCTTTGTTGTACACACATGTTCGCAGACAAACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | AGCTCCCTTAGACAGACTAGCGCAGACCAGAGACAAGGAGACAGATTTAGCCAGTGTCTTCTTGTGTGCTaGCCACGGCTTACCTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: SSLRQTSADQRQGDRFSQCLLVC*PRLTCS Trigger: AGAGCAGGTAAGCCGTGGTCAGCACACAAGAAGACA...CTGGCTAAATCTGTCTCCTTGTCTCTGGTCTGCGCTAGTCTGTCTAAGGGAGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | GACTCAATGGACTTAAGGACTGGGTTGACTTCAGTCAGCCAGAAGCCTGTTTTACTCCGAGCCAGCCGATaGAAACTGAGGCTGGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: DSMDLRTGLTSVSQKPVLLRASR*KLRLED Trigger: ATCCTCCAGCCTCAGTTTTCATCGGCTGGCTCGGAG...TAAAACAGGCTTCTGGCTGACTGAAGTCAACCCAGTCCTTAAGTCCATTGAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | CACCCTCTCCTTCCACCCTGGGTGATGACCGCAGGCAGTCAGTCAGGTTTGCCAGGAATGATTCTCAATTaGCAGGTCACAGTTATCAAT | + |
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Preference number: 4 (lower is better) Translates to: HPLLPPWVMTAGSQSGLPGMILN*QVTVIN Trigger: ATTGATAACTGTGACCTGTCAATTGAGAATCATTCC...TGGCAAACCTGACTGACTGCCTGCGGTCATCACCCAGGGTGGAAGGAGAGGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR GCA 90 bp | GTTCAAGGAAACAAAGTGGGAAAAGGTACAGAAGAGGGAGCTATAGAGGCAAGCAAGGGATGCTCTAAGTaGAGCGCCTCCAGGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: VQGNKVGKGTEEGAIEASKGCSK*SASRRQ Trigger: CTGCCTCCTGGAGGCGCTGCACTTAGAGCATCCCTT...GCTTGCCTCTATAGCTCCCTCTTCTGTACCTTTTCCCACTTTGTTTCCTTGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR CCA 90 bp | CTTCCACCCTGGGTGATGACCGCAGGCAGTCAGTCAGGTTTGCCATTAAATGCCCCGCATGTATATGTGTaGGAAACTGTCCTTTCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: LPPWVMTAGSQSGLPLNAPHVYV*ETVLSL Trigger: AAGGGAAAGGACAGTTTCCCACACATATACATGCGG...GGCATTTAATGGCAAACCTGACTGACTGCCTGCGGTCATCACCCAGGGTGGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR CCA 90 bp | CTTCCACCCTGGGTGATGACCGCAGGCAGTCAGTCAGGTTTGCCATTAAATGCCAATGTCACCATCTGCTaGGCAGTACATAGAAAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: LPPWVMTAGSQSGLPLNANVTIC*AVHRKV Trigger: GACTTTTCTATGTACTGCCCAGCAGATGGTGACATT...GGCATTTAATGGCAAACCTGACTGACTGCCTGCGGTCATCACCCAGGGTGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR CCA 90 bp | AGCTCCCTTAGACAGACTAGCGCAGACCAGAGACAAGGAGACAGATTTAGCCAGAGACCAGTGATCCTCTaGACAAGGGAAACTTCTTCG | + |
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Preference number: 4 (lower is better) Translates to: SSLRQTSADQRQGDRFSQRPVIL*TRETSS Trigger: CGAAGAAGTTTCCCTTGTCCAGAGGATCACTGGTCT...CTGGCTAAATCTGTCTCCTTGTCTCTGGTCTGCGCTAGTCTGTCTAAGGGAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | CTTCCACCCTGGGTGATGACCGCAGGCAGTCAGTCAGGTTTGCCATTAAATGCCCTGAAACTGTGTTTCTaGATTGAGAACAAACTCCGA | + |
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Preference number: 4 (lower is better) Translates to: LPPWVMTAGSQSGLPLNALKLCF*IENKLR Trigger: TCGGAGTTTGTTCTCAATTCAGAAACACAGTTTCAG...GGCATTTAATGGCAAACCTGACTGACTGCCTGCGGTCATCACCCAGGGTGGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | CTCAATGGACTTAAGGACTGGGTTGACTTCAGTCAGCCAGAAGCCTGTTTTAATCCACTTACCATGGGTTaGCTGGCTTGCAGTGCATGG | + |
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Preference number: 4 (lower is better) Translates to: LNGLKDWVDFSQPEACFNPLTMG*LACSAW Trigger: CCATGCACTGCAAGCCAGTCAACCCATGGTAAGTGG...ATTAAAACAGGCTTCTGGCTGACTGAAGTCAACCCAGTCCTTAAGTCCATTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR GCA 90 bp | ACTGAGCCATTTCTCTGGCCCCAGACTGAAAGTTCGAGCAACAGAAAACTGAGTATAACCAGGTCTGGTTaGTTCACACTGGTCAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: TEPFLWPQTESSSNRKLSITRSG*FTLVRS Trigger: GCTCCTGACCAGTGTGAAGCAACCAGACCTGGTTAT...ACTCAGTTTTCTGTTGCTCGAACTTTCAGTCTGGGGCCAGAGAAATGGCTCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR GCA 90 bp | ACTGAGCCATTTCTCTGGCCCCAGACTGAAAGTTCGAGCAACAGAAAACTGAGTTTGACTGGCTTGCAGTaGATGGAGAGACCGCATGTA | + |
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Preference number: 4 (lower is better) Translates to: TEPFLWPQTESSSNRKLSLTGLQ*MERPHV Trigger: TACATGCGGTCTCTCCATGCACTGCAAGCCAGTCAA...ACTCAGTTTTCTGTTGCTCGAACTTTCAGTCTGGGGCCAGAGAAATGGCTCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | GTTCAAGGAAACAAAGTGGGAAAAGGTACAGAAGAGGGAGCTATAGAGGCAAGCCCAGCCGATGAAAACTaGGGCTGGAGGATTTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: VQGNKVGKGTEEGAIEASPADEN*GWRISV Trigger: AACAGAAATCCTCCAGCCTCAGTTTTCATCGGCTGG...GCTTGCCTCTATAGCTCCCTCTTCTGTACCTTTTCCCACTTTGTTTCCTTGAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | ACTGAGCCATTTCTCTGGCCCCAGACTGAAAGTTCGAGCAACAGAAAACTGAGTTGGTCAGCAGTTTTCTaGGGTTGCCTCTTGATGTTG | + |
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Preference number: 4 (lower is better) Translates to: TEPFLWPQTESSSNRKLSWSAVF*GCLLML Trigger: CAACATCAAGAGGCAACCTCAGAAAACTGCTGACCA...ACTCAGTTTTCTGTTGCTCGAACTTTCAGTCTGGGGCCAGAGAAATGGCTCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR CCA 90 bp | TTTATACTCATGTTCACAAACAATGTAAGATGGCATGTGAAGACCTCGTTCAAGTTCGTACACAACACTTaGCCGCCCTCGGGCCCCACG | + |
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Preference number: 4 (lower is better) Translates to: FILMFTNNVRWHVKTSFKFVHNT*PPSGPT Trigger: CGTGGGGCCCGAGGGCGGCCAAGTGTTGTGTACGAA...CTTGAACGAGGTCTTCACATGCCATCTTACATTGTTTGTGAACATGAGTATAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR CCA 90 bp | CTTCCACCCTGGGTGATGACCGCAGGCAGTCAGTCAGGTTTGCCATTAAATGCCACTGAAGTTAGTAATTaGTACTTACCAGCTACTGAC | + |
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Preference number: 4 (lower is better) Translates to: LPPWVMTAGSQSGLPLNATEVSN*YLPATD Trigger: GTCAGTAGCTGGTAAGTACCAATTACTAACTTCAGT...GGCATTTAATGGCAAACCTGACTGACTGCCTGCGGTCATCACCCAGGGTGGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR CCA 90 bp | CTCAATGGACTTAAGGACTGGGTTGACTTCAGTCAGCCAGAAGCCTGTTTTAATCTGGCTTGCAGTGCATaGAGAGACCGCATGTATATG | + |
|
Preference number: 4 (lower is better) Translates to: LNGLKDWVDFSQPEACFNLACSA*RDRMYM Trigger: CATATACATGCGGTCTCTCCATGCACTGCAAGCCAG...ATTAAAACAGGCTTCTGGCTGACTGAAGTCAACCCAGTCCTTAAGTCCATTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR CCA 90 bp | CTCAATGGACTTAAGGACTGGGTTGACTTCAGTCAGCCAGAAGCCTGTTTTAATTTACCATGGGTTGACTaGCTTGCAGTGCATGGAGAG | + |
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Preference number: 4 (lower is better) Translates to: LNGLKDWVDFSQPEACFNLPWVD*LAVHGE Trigger: CTCTCCATGCACTGCAAGCCAGTCAACCCATGGTAA...ATTAAAACAGGCTTCTGGCTGACTGAAGTCAACCCAGTCCTTAAGTCCATTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR CCA 90 bp | GTTCAAGGAAACAAAGTGGGAAAAGGTACAGAAGAGGGAGCTATAGAGGCAAGCGTAAATAACCAGGTCTaGTTGCTTCACACTGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: VQGNKVGKGTEEGAIEASVNNQV*LLHTGQ Trigger: CTGACCAGTGTGAAGCAACCAGACCTGGTTATTTAC...GCTTGCCTCTATAGCTCCCTCTTCTGTACCTTTTCCCACTTTGTTTCCTTGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR CCA 90 bp | CTCAATGGACTTAAGGACTGGGTTGACTTCAGTCAGCCAGAAGCCTGTTTTAATTATCCCGCTTCTTTCTaGAGGCAAGCACTTCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: LNGLKDWVDFSQPEACFNYPASF*RQALQH Trigger: ATGCTGAAGTGCTTGCCTCCAGAAAGAAGCGGGATA...ATTAAAACAGGCTTCTGGCTGACTGAAGTCAACCCAGTCCTTAAGTCCATTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | GTTCAAGGAAACAAAGTGGGAAAAGGTACAGAAGAGGGAGCTATAGAGGCAAGCTCTTCCTTCAGTGGATaGAGAAAAGACAGACAGGTA | + |
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Preference number: 4 (lower is better) Translates to: VQGNKVGKGTEEGAIEASSSFSG*RKDRQV Trigger: TACCTGTCTGTCTTTTCTTCATCCACTGAAGGAAGA...GCTTGCCTCTATAGCTCCCTCTTCTGTACCTTTTCCCACTTTGTTTCCTTGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | GTGTTTGTCTGCGAACATGTGTGTACAACAAAGGACATGTCTCAGGACTTCACCCACAAGCCATACACTTaGAAACGTAGTCACACATCA | + |
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Preference number: 4 (lower is better) Translates to: VFVCEHVCTTKDMSQDFTHKPYT*KRSHTS Trigger: TGATGTGTGACTACGTTTTCAAGTGTATGGCTTGTG...GGTGAAGTCCTGAGACATGTCCTTTGTTGTACACACATGTTCGCAGACAAACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | GTGTTTGTCTGCGAACATGTGTGTACAACAAAGGACATGTCTCAGGACTTCACCTATGATTCTAGAATCTaGAACAGGAAGGCCTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: VFVCEHVCTTKDMSQDFTYDSRI*NRKACH Trigger: GTGACAGGCCTTCCTGTTTCAGATTCTAGAATCATA...GGTGAAGTCCTGAGACATGTCCTTTGTTGTACACACATGTTCGCAGACAAACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | TTAGACAGACTAGCGCAGACCAGAGACAAGGAGACAGATTTAGCCAGTTTTTGTCAGAGGACCATAGAGTaGGGTATAAATGCACATGTG | + |
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Preference number: 4 (lower is better) Translates to: LDRLAQTRDKETDLASFCQRTIE*GINAHV Trigger: CACATGTGCATTTATACCTCACTCTATGGTCCTCTG...ACAAAAACTGGCTAAATCTGTCTCCTTGTCTCTGGTCTGCGCTAGTCTGTCTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | GACTCAATGGACTTAAGGACTGGGTTGACTTCAGTCAGCCAGAAGCCTGTTTTAATCTTAAATGCTCCGTaGAAAGCTCTCTCATGCTGT | + |
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Preference number: 4 (lower is better) Translates to: DSMDLRTGLTSVSQKPVLILNAP*KALSCC Trigger: ACAGCATGAGAGAGCTTTTCACGGAGCATTTAAGAT...TAAAACAGGCTTCTGGCTGACTGAAGTCAACCCAGTCCTTAAGTCCATTGAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR GCA 90 bp | ACTGAGCCATTTCTCTGGCCCCAGACTGAAAGTTCGAGCAACAGAAAACTGAGTGCCAACATTCAACTCTaGAAAACAGTGATCCAACAA | + |
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Preference number: 4 (lower is better) Translates to: TEPFLWPQTESSSNRKLSANIQL*KTVIQQ Trigger: TTGTTGGATCACTGTTTTGCAGAGTTGAATGTTGGC...ACTCAGTTTTCTGTTGCTCGAACTTTCAGTCTGGGGCCAGAGAAATGGCTCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR GCA 90 bp | AGCTCCCTTAGACAGACTAGCGCAGACCAGAGACAAGGAGACAGATTTAGCCAGTATGCTATTAAGTCTTaGACAGTAAATAACCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: SSLRQTSADQRQGDRFSQYAIKS*TVNNQV Trigger: GACCTGGTTATTTACTGTGCAAGACTTAATAGCATA...CTGGCTAAATCTGTCTCCTTGTCTCTGGTCTGCGCTAGTCTGTCTAAGGGAGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR GCA 90 bp | AGGACTGGGTTGACTTCAGTCAGCCAGAAGCCTGTTTTAATATTTAGCTTGAGCTGTTCCAGTGTCTTCTaGTGTAGGATTTCCAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: RTGLTSVSQKPVLIFSLSCSSVF*CRISSG Trigger: TCCACTGGAAATCCTACAGCAGAAGACACTGGAACA...GCTCAAGCTAAATATTAAAACAGGCTTCTGGCTGACTGAAGTCAACCCAGTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR GCA 90 bp | GACAGATTTAGCCAGTTTTTGTTCCATAGAGCTGATACCTGTTGTCTGAATGGTAGGTATCTAGTGACTTaGGCATCACTGGCAGCGTGT | + |
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Preference number: 4 (lower is better) Translates to: DRFSQFLFHRADTCCLNGRYLVT*ASLAAC Trigger: ACACGCTGCCAGTGATGCGCAAGTCACTAGATACCT...ACCATTCAGACAACAGGTATCAGCTCTATGGAACAAAAACTGGCTAAATCTGTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR CCA 90 bp | GTTCAAGGAAACAAAGTGGGAAAAGGTACAGAAGAGGGAGCTATAGAGGCAAGCAGCATTTCATCTGTTTaGGATGGAGCTATTGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: VQGNKVGKGTEEGAIEASSISSV*DGAIGV Trigger: GACACCAATAGCTCCATCCCAAACAGATGAAATGCT...GCTTGCCTCTATAGCTCCCTCTTCTGTACCTTTTCCCACTTTGTTTCCTTGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| 3UTR CAA 72 bp | GCAGACCAGAGACAAGGAGACAGATTTAGCCAGTTTTaGTTCCATAGAGCTGATACCTGTTGTCTGAATGGT | + |
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Preference number: 4 (lower is better) Translates to: ADQRQGDRFSQF*FHRADTCCLNG Trigger: ACCATTCAGACAACAGGTATCAGCTCTATGGAACAAAAACTGGCTAAATCTGTCTCCTTGTCTCTGGTCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR GCA 90 bp | AGATTTAGCCAGTTTTTGTTCCATAGAGCTGATACCTGTTGTCTGAATGGTCTGAGCAACTCTAGCGAGTaGCTGCACAGTTTTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: RFSQFLFHRADTCCLNGLSNSSE*LHSFLP Trigger: AGGAAGAAAACTGTGCAGGCACTCGCTAGAGTTGCT...CAGACCATTCAGACAACAGGTATCAGCTCTATGGAACAAAAACTGGCTAAATCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR GCA 90 bp | GACTCAATGGACTTAAGGACTGGGTTGACTTCAGTCAGCCAGAAGCCTGTTTTAGGACTTGGGTTACATTaGTGTTTGGTTTGTATGATG | + |
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Preference number: 4 (lower is better) Translates to: DSMDLRTGLTSVSQKPVLGLGLH*CLVCMM Trigger: CATCATACAAACCAAACAGCAATGTAACCCAAGTCC...TAAAACAGGCTTCTGGCTGACTGAAGTCAACCCAGTCCTTAAGTCCATTGAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR CCA 90 bp | AGATTTAGCCAGTTTTTGTTCCATAGAGCTGATACCTGTTGTCTGAATGGTCTGACGCCACTATCATCCTaGCTAAGGGATGCTCTAAGT | + |
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Preference number: 4 (lower is better) Translates to: RFSQFLFHRADTCCLNGLTPLSS*LRDALS Trigger: ACTTAGAGCATCCCTTAGCCAGGATGATAGTGGCGT...CAGACCATTCAGACAACAGGTATCAGCTCTATGGAACAAAAACTGGCTAAATCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | GTGTTTGTCTGCGAACATGTGTGTACAACAAAGGACATGTCTCAGGACTTCACCGTCACACATCAACTGTaGAATGAATCTGTGATTGTT | + |
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Preference number: 4 (lower is better) Translates to: VFVCEHVCTTKDMSQDFTVTHQL*NESVIV Trigger: AACAATCACAGATTCATTTCACAGTTGATGTGTGAC...GGTGAAGTCCTGAGACATGTCCTTTGTTGTACACACATGTTCGCAGACAAACAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | GTTCAAGGAAACAAAGTGGGAAAAGGTACAGAAGAGGGAGCTATAGAGGCAAGCAACTCTGCAAAACAGTaGTCCAACAACTCAAATACT | + |
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Preference number: 4 (lower is better) Translates to: VQGNKVGKGTEEGAIEASNSAKQ*SNNSNT Trigger: AGTATTTGAGTTGTTGGATCACTGTTTTGCAGAGTT...GCTTGCCTCTATAGCTCCCTCTTCTGTACCTTTTCCCACTTTGTTTCCTTGAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR GCA 90 bp | CTCAATGGACTTAAGGACTGGGTTGACTTCAGTCAGCCAGAAGCCTGTTTTAATAGGTCAGTAAATAGCTaGCGAAGCATCTTAAATGCT | + |
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Preference number: 4 (lower is better) Translates to: LNGLKDWVDFSQPEACFNRSVNS*RSILNA Trigger: AGCATTTAAGATGCTTCGGCAGCTATTTACTGACCT...ATTAAAACAGGCTTCTGGCTGACTGAAGTCAACCCAGTCCTTAAGTCCATTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR GCA 90 bp | CTCAATGGACTTAAGGACTGGGTTGACTTCAGTCAGCCAGAAGCCTGTTTTAATAGTGATTACGCTCTCTaGTATTGTCATAAGCAAGAG | + |
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Preference number: 4 (lower is better) Translates to: LNGLKDWVDFSQPEACFNSDYAL*YCHKQE Trigger: CTCTTGCTTATGACAATAGCAGAGAGCGTAATCACT...ATTAAAACAGGCTTCTGGCTGACTGAAGTCAACCCAGTCCTTAAGTCCATTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | TTTATACTCATGTTCACAAACAATGTAAGATGGCATGTGAAGACCTCGTTCAAGCCTGTCTTTTTAAGGTaGCTGGAAACACACGCCACT | + |
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Preference number: 4 (lower is better) Translates to: FILMFTNNVRWHVKTSFKPVFLR*LETHAT Trigger: AGTGGCGTGTGTTTCCAGTCACCTTAAAAAGACAGG...CTTGAACGAGGTCTTCACATGCCATCTTACATTGTTTGTGAACATGAGTATAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR CCA 90 bp | CAGAGACAAGGAGACAGATTTAGCCAGTTTTTGTTCCATAGAGCTGATACCTGTATAAGCAAGAGGACTTaGGTTACATTGCTGTTTGGT | + |
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Preference number: 4 (lower is better) Translates to: QRQGDRFSQFLFHRADTCISKRT*VTLLFG Trigger: ACCAAACAGCAATGTAACCCAAGTCCTCTTGCTTAT...ACAGGTATCAGCTCTATGGAACAAAAACTGGCTAAATCTGTCTCCTTGTCTCTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR TCA 90 bp | GACAGATTTAGCCAGTTTTTGTTCCATAGAGCTGATACCTGTTGTCTGAATGGTGAAATAGATTTCCACTaGCAACAGTTTTTCCAATGC | + |
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Preference number: 4 (lower is better) Translates to: DRFSQFLFHRADTCCLNGEIDFH*QQFFQC Trigger: GCATTGGAAAAACTGTTGTCAGTGGAAATCTATTTC...ACCATTCAGACAACAGGTATCAGCTCTATGGAACAAAAACTGGCTAAATCTGTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS-3UTR GCA 90 bp | TTTATACTCATGTTCACAAACAATGTAAGATGGCATGTGAAGACCTCGTTCAAGCCTAATGTCACCATCTaGTGGGCAGTACATAGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: FILMFTNNVRWHVKTSFKPNVTI*WAVHRK Trigger: TTTTCTATGTACTGCCCAGCAGATGGTGACATTAGG...CTTGAACGAGGTCTTCACATGCCATCTTACATTGTTTGTGAACATGAGTATAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS-3UTR TCA 90 bp | TTTTATACTCATGTTCACAAACAATGTAAGATGGCATGTGAAGACCTCGTTCAAATTGTTTGGCATAGCTaGGAAGGTAGTAACTCATCA | + |
|
Preference number: 4 (lower is better) Translates to: FYTHVHKQCKMACEDLVQIVWHS*EGSNSS Trigger: TGATGAGTTACTACCTTCTCAGCTATGCCAAACAAT...TTGAACGAGGTCTTCACATGCCATCTTACATTGTTTGTGAACATGAGTATAAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS GCA 90 bp | TACACAACACTTGGCCGCCCTCGGGCCCCACGCAGCGGTTCGCGATaGTCTCCAGCACCTCGGCCACCCGCAAAGCCGCCGTCACCGACC | + |
|
Preference number: 5 (lower is better) Translates to: YTTLGRPRAPRSGSR*SPAPRPPAKPPSPT Trigger: GGTCGGTGACGGCGGCTTTGCGGGTGGCCGAGGTGCTGGAGAGCATCGCGAACCGCTGCGTGGGGCCCGAGGGCGGCCAAGTGTTGTGTA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CCA 90 bp | TCCCTGCTAAGCAGCACCTCGCCGGTGGGCTTCGTACACAACACTTaGCCGCCCTCGGGCCCCACGCAGCGGTTCGCGATGCTCTCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: SLLSSTSPVGFVHNT*PPSGPTQRFAMLSS Trigger: GCTGGAGAGCATCGCGAACCGCTGCGTGGGGCCCGAGGGCGGCCAAGTGTTGTGTACGAAGCCCACCGGCGAGGTGCTGCTTAGCAGGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS-3UTR CAA 90 bp | AGCTCCCTTAGACAGACTAGCGCAGACCAGAGACAAGGAGACAGATTTAGCCAGCTTCGTACACAACACTaGGCCGCCCTCGGGCCCCAC | + |
|
Preference number: 5 (lower is better) Translates to: SSLRQTSADQRQGDRFSQLRTQH*AALGPH Trigger: GTGGGGCCCGAGGGCGGCCAAGTGTTGTGTACGAAG...CTGGCTAAATCTGTCTCCTTGTCTCTGGTCTGCGCTAGTCTGTCTAAGGGAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CCA 90 bp | CAGCTACTGACTCGAACCCTGATTGACCACTTACCATGGGTTGACTaGCTTGCAGTGCATGGAGAGACCGCATGTATATGTGTGGGAAAC | + |
|
Preference number: 5 (lower is better) Translates to: QLLTRTLIDHLPWVD*LAVHGETACICVGN Trigger: GTTTCCCACACATATACATGCGGTCTCTCCATGCACTGCAAGCCAGTCAACCCATGGTAAGTGGTCAATCAGGGTTCGAGTCAGTAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS-3UTR CAA 90 bp | GTTCAAGGAAACAAAGTGGGAAAAGGTACAGAAGAGGGAGCTATAGAGGCAAGCCATGGGTTGACTGGCTaGCAGTGCATGGAGAGACCG | + |
|
Preference number: 5 (lower is better) Translates to: VQGNKVGKGTEEGAIEASHGLTG*QCMERP Trigger: CGGTCTCTCCATGCACTGCAAGCCAGTCAACCCATG...GCTTGCCTCTATAGCTCCCTCTTCTGTACCTTTTCCCACTTTGTTTCCTTGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CCA 90 bp | GGTACTTACCAGCTACTGACTCGAACCCTGATTGACCACTTACCATaGGTTGACTGGCTTGCAGTGCATGGAGAGACCGCATGTATATGT | + |
|
Preference number: 5 (lower is better) Translates to: GTYQLLTRTLIDHLP*VDWLAVHGETACIC Trigger: ACATATACATGCGGTCTCTCCATGCACTGCAAGCCAGTCAACCCATGGTAAGTGGTCAATCAGGGTTCGAGTCAGTAGCTGGTAAGTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS-3UTR CAA 90 bp | AGCTCCCTTAGACAGACTAGCGCAGACCAGAGACAAGGAGACAGATTTAGCCAGTTTGGGATGGAGCTATaGGTGTCTTCTTGTGTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: SSLRQTSADQRQGDRFSQFGMEL*VSSCVL Trigger: CAGCACACAAGAAGACACCAATAGCTCCATCCCAAA...CTGGCTAAATCTGTCTCCTTGTCTCTGGTCTGCGCTAGTCTGTCTAAGGGAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS TCA 90 bp | CACACTGTGAAGCAACCTCTGGTAGGACACAAGGAGAAAGACCAGTaGTCCTCTGGACAAGGGAAACTTCTTCGGCTGATAAACACTCCA | + |
|
Preference number: 5 (lower is better) Translates to: HTVKQPLVGHKEKDQ*SSGQGKLLRLINTP Trigger: TGGAGTGTTTATCAGCCGAAGAAGTTTCCCTTGTCCAGAGGATCACTGGTCTTTCTCCTTGTGTCCTACCAGAGGTTGCTTCACAGTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS GCA 90 bp | AGGCTGGAGGATTTCTGTTACTATCACCATCCTAATGTCACCATCTaGTGGGCAGTACATAGAAAAGTCCCTGGGAAGCACAAGGCCATC | + |
|
Preference number: 5 (lower is better) Translates to: RLEDFCYYHHPNVTI*WAVHRKVPGKHKAI Trigger: GATGGCCTTGTGCTTCCCAGGGACTTTTCTATGTACTGCCCAGCAGATGGTGACATTAGGATGGTGATAGTAACAGAAATCCTCCAGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CCA 90 bp | ATCCCGCTTCTTTCTGGAGGCAAGCACTTCAGCATTTCATCTGTTTaGGATGGAGCTATTGGTGTCTTCTTGTGTGCTGACCACGGCTTA | + |
|
Preference number: 5 (lower is better) Translates to: IPLLSGGKHFSISSV*DGAIGVFLCADHGL Trigger: TAAGCCGTGGTCAGCACACAAGAAGACACCAATAGCTCCATCCCAAACAGATGAAATGCTGAAGTGCTTGCCTCCAGAAAGAAGCGGGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS TCA 90 bp | ACCAGGTCTGGTTGCTTCACACTGGTCAGGAGCAGTTTTACATTCTaGCCACGCAAGTGGTTCATTACTGTTTTTGTCCTGTCCGTGATC | + |
|
Preference number: 5 (lower is better) Translates to: TRSGCFTLVRSSFTF*PRKWFITVFVLSVI Trigger: GATCACGGACAGGACAAAAACAGTAATGAACCACTTGCGTGGTCAGAATGTAAAACTGCTCCTGACCAGTGTGAAGCAACCAGACCTGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS-3UTR CAA 90 bp | CTCAATGGACTTAAGGACTGGGTTGACTTCAGTCAGCCAGAAGCCTGTTTTAATACCACTTACCATGGGTaGACTGGCTTGCAGTGCATG | + |
|
Preference number: 5 (lower is better) Translates to: LNGLKDWVDFSQPEACFNTTYHG*TGLQCM Trigger: CATGCACTGCAAGCCAGTCAACCCATGGTAAGTGGT...ATTAAAACAGGCTTCTGGCTGACTGAAGTCAACCCAGTCCTTAAGTCCATTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS TCA 90 bp | AGATCAAGGTCAGTAAATAGCTGCCGAAGCATCTTAAATGCTCCGTaGAAAGCTCTCTCATGCTGTTCAACAAGACCCAGAACCGGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: RSRSVNSCRSILNAP*KALSCCSTRPRTGP Trigger: TGGACCGGTTCTGGGTCTTGTTGAACAGCATGAGAGAGCTTTTCACGGAGCATTTAAGATGCTTCGGCAGCTATTTACTGACCTTGATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS GCA 90 bp | AAGACCCAGAACCGGTCCACAGAGGACCATAGAGTGAGGTATAAATaGACATGTGCTAATCAAGCCGAGATGAACATACCTCTTGGATCT | + |
|
Preference number: 5 (lower is better) Translates to: KTQNRSTEDHRVRYK*TCANQAEMNIPLGS Trigger: AGATCCAAGAGGTATGTTCATCTCGGCTTGATTAGCACATGTGCATTTATACCTCACTCTATGGTCCTCTGTGGACCGGTTCTGGGTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CCA 90 bp | CTGGAGGATTTCTGTTACTATCACCATCCTAATGTCACCATCTGCTaGGCAGTACATAGAAAAGTCCCTGGGAAGCACAAGGCCATCTAT | + |
|
Preference number: 5 (lower is better) Translates to: LEDFCYYHHPNVTIC*AVHRKVPGKHKAIY Trigger: ATAGATGGCCTTGTGCTTCCCAGGGACTTTTCTATGTACTGCCCAGCAGATGGTGACATTAGGATGGTGATAGTAACAGAAATCCTCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CCA 90 bp | GGGTTGACTGGCTTGCAGTGCATGGAGAGACCGCATGTATATGTGTaGGAAACTGTCCTTTCCCTTCTTAGGCTTATAAAGGATTTTAGG | + |
|
Preference number: 5 (lower is better) Translates to: GLTGLQCMERPHVYV*ETVLSLLRLIKDFR Trigger: CCTAAAATCCTTTATAAGCCTAAGAAGGGAAAGGACAGTTTCCCACACATATACATGCGGTCTCTCCATGCACTGCAAGCCAGTCAACCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS TCA 90 bp | AGAAAAGTCCCTGGGAAGCACAAGGCCATCTATGATTCTAGAATCTaGAACAGGAAGGCCTGTCACGCCAACATTCAACTCTGCAAAACA | + |
|
Preference number: 5 (lower is better) Translates to: RKVPGKHKAIYDSRI*NRKACHANIQLCKT Trigger: TGTTTTGCAGAGTTGAATGTTGGCGTGACAGGCCTTCCTGTTTCAGATTCTAGAATCATAGATGGCCTTGTGCTTCCCAGGGACTTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS TCA 90 bp | GAAACAGGAAGGCCTGTCACGCCAACATTCAACTCTGCAAAACAGTaGTCCAACAACTCAAATACTTCAACCCCACTTTCACAAGCCATA | + |
|
Preference number: 5 (lower is better) Translates to: ETGRPVTPTFNSAKQ*SNNSNTSTPLSQAI Trigger: TATGGCTTGTGAAAGTGGGGTTGAAGTATTTGAGTTGTTGGATCACTGTTTTGCAGAGTTGAATGTTGGCGTGACAGGCCTTCCTGTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS TCA 90 bp | TGTGTTTCTGAATTGAGAACAAACTCCGAGCCAGCCGATGAAAACTaGGGCTGGAGGATTTCTGTTACTATCACCATCCTAATGTCACCA | + |
|
Preference number: 5 (lower is better) Translates to: CVSELRTNSEPADEN*GWRISVTITILMSP Trigger: TGGTGACATTAGGATGGTGATAGTAACAGAAATCCTCCAGCCTCAGTTTTCATCGGCTGGCTCGGAGTTTGTTCTCAATTCAGAAACACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS TCA 90 bp | TCCAGTGTCTTCTGCTGTAGGATTTCCAGTGGAATGATTCTCAATTaGCAGGTCACAGTTATCAATTATCCCGCTTCTTTCTGGAGGCAA | + |
|
Preference number: 5 (lower is better) Translates to: SSVFCCRISSGMILN*QVTVINYPASFWRQ Trigger: TTGCCTCCAGAAAGAAGCGGGATAATTGATAACTGTGACCTGTCAATTGAGAATCATTCCACTGGAAATCCTACAGCAGAAGACACTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS GCA 90 bp | GTTTTCTTCCTTCAGTGGATGAAGAAAAGACAGACAGGTAGTGCCTaGTTAAACTCCGGTCTACAATACAACCTAGGGTTTGTGTCTGAA | + |
|
Preference number: 5 (lower is better) Translates to: VFFLQWMKKRQTGSA*LNSGLQYNLGFVSE Trigger: TTCAGACACAAACCCTAGGTTGTATTGTAGACCGGAGTTTAAGCAGGCACTACCTGTCTGTCTTTTCTTCATCCACTGAAGGAAGAAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS-3UTR CAA 90 bp | GTTCAAGGAAACAAAGTGGGAAAAGGTACAGAAGAGGGAGCTATAGAGGCAAGCAGGACTTGGGTTACATaGCTGTTTGGTTTGTATGAT | + |
|
Preference number: 5 (lower is better) Translates to: VQGNKVGKGTEEGAIEASRTWVT*LFGLYD Trigger: ATCATACAAACCAAACAGCAATGTAACCCAAGTCCT...GCTTGCCTCTATAGCTCCCTCTTCTGTACCTTTTCCCACTTTGTTTCCTTGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS-3UTR CAA 90 bp | GTTCAAGGAAACAAAGTGGGAAAAGGTACAGAAGAGGGAGCTATAGAGGCAAGCAGCAGTTTTCTGAGGTaGCCTCTTGATGTTGATTAT | + |
|
Preference number: 5 (lower is better) Translates to: VQGNKVGKGTEEGAIEASSSFLR*PLDVDY Trigger: ATAATCAACATCAAGAGGCAACCTCAGAAAACTGCT...GCTTGCCTCTATAGCTCCCTCTTCTGTACCTTTTCCCACTTTGTTTCCTTGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS-3UTR CAA 90 bp | AGATTTAGCCAGTTTTTGTTCCATAGAGCTGATACCTGTTGTCTGAATGGTCTGTTGTGTCTGAAACGTTaGCAGAGCCTGGGAAATAGA | + |
|
Preference number: 5 (lower is better) Translates to: RFSQFLFHRADTCCLNGLLCLKR*QSLGNR Trigger: TCTATTTCCCAGGCTCTGCAAACGTTTCAGACACAA...CAGACCATTCAGACAACAGGTATCAGCTCTATGGAACAAAAACTGGCTAAATCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS-3UTR CAA 90 bp | GACAGATTTAGCCAGTTTTTGTTCCATAGAGCTGATACCTGTTGTCTGAATGGTCTAAGGATGAGGGGCTaGCAAAACTTCACCAAAGTA | + |
|
Preference number: 5 (lower is better) Translates to: DRFSQFLFHRADTCCLNGLRMRG*QNFTKV Trigger: TACTTTGGTGAAGTTTTGCAAGCCCCTCATCCTTAG...ACCATTCAGACAACAGGTATCAGCTCTATGGAACAAAAACTGGCTAAATCTGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS-3UTR CAA 90 bp | GTGTTTGTCTGCGAACATGTGTGTACAACAAAGGACATGTCTCAGGACTTCACCTGGAATGATTCTCAATaGACAGGTCACAGTTATCAA | + |
|
Preference number: 5 (lower is better) Translates to: VFVCEHVCTTKDMSQDFTWNDSQ*TGHSYQ Trigger: TTGATAACTGTGACCTGTCAATTGAGAATCATTCCA...GGTGAAGTCCTGAGACATGTCCTTTGTTGTACACACATGTTCGCAGACAAACAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS-3UTR CAA 90 bp | AGATTTAGCCAGTTTTTGTTCCATAGAGCTGATACCTGTTGTCTGAATGGTCTGAACTGTGTTTCTGAATaGAGAACAAACTCCGAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: RFSQFLFHRADTCCLNGLNCVSE*RTNSEP Trigger: TGGCTCGGAGTTTGTTCTCAATTCAGAAACACAGTT...CAGACCATTCAGACAACAGGTATCAGCTCTATGGAACAAAAACTGGCTAAATCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS GCA 72 bp | CTTGGCCGCCCTCGGGCCCCACGCAGCGGTTCGCGATaGTCTCCAGCACCTCGGCCACCCGCAAAGCCGCCG | + |
|
Preference number: 6 (lower is better) Translates to: LGRPRAPRSGSR*SPAPRPPAKPP Trigger: CGGCGGCTTTGCGGGTGGCCGAGGTGCTGGAGAGCATCGCGAACCGCTGCGTGGGGCCCGAGGGCGGCCAAG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CCA 72 bp | AGCAGCACCTCGCCGGTGGGCTTCGTACACAACACTTaGCCGCCCTCGGGCCCCACGCAGCGGTTCGCGATG | + |
|
Preference number: 6 (lower is better) Translates to: SSTSPVGFVHNT*PPSGPTQRFAM Trigger: CATCGCGAACCGCTGCGTGGGGCCCGAGGGCGGCCAAGTGTTGTGTACGAAGCCCACCGGCGAGGTGCTGCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CAA 90 bp | ATCCCTGCTAAGCAGCACCTCGCCGGTGGGCTTCGTACACAACACTaGGCCGCCCTCGGGCCCCACGCAGCGGTTCGCGATGCTCTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: IPAKQHLAGGLRTQH*AALGPHAAVRDALQ Trigger: CTGGAGAGCATCGCGAACCGCTGCGTGGGGCCCGAGGGCGGCCAAGTGTTGTGTACGAAGCCCACCGGCGAGGTGCTGCTTAGCAGGGAT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS GCA 72 bp | CACGCCACTATCATCCTGGCTAAGGGATGCTCTAAGTaGAGCGCCTCCAGGAGGCAGCCTCCATCCCTGCTA | + |
|
Preference number: 6 (lower is better) Translates to: HATIILAKGCSK*SASRRQPPSLL Trigger: TAGCAGGGATGGAGGCTGCCTCCTGGAGGCGCTGCACTTAGAGCATCCCTTAGCCAGGATGATAGTGGCGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CCA 72 bp | CAGCTACTGACTCGAACCCTGATTGACCACTTACCATaGGTTGACTGGCTTGCAGTGCATGGAGAGACCGCA | + |
|
Preference number: 6 (lower is better) Translates to: QLLTRTLIDHLP*VDWLAVHGETA Trigger: TGCGGTCTCTCCATGCACTGCAAGCCAGTCAACCCATGGTAAGTGGTCAATCAGGGTTCGAGTCAGTAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CCA 72 bp | TTCCACCCACTGGCAGCACACAGCCTGCTGGCACAGTaGATGAACAATAACCCTGACAAGTACAGGTATCTA | + |
|
Preference number: 6 (lower is better) Translates to: FHPLAAHSLLAQ*MNNNPDKYRYL Trigger: TAGATACCTGTACTTGTCAGGGTTATTGTTCATCCACTGTGCCAGCAGGCTGTGTGCTGCCAGTGGGTGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CCA 72 bp | ACTCGAACCCTGATTGACCACTTACCATGGGTTGACTaGCTTGCAGTGCATGGAGAGACCGCATGTATATGT | + |
|
Preference number: 6 (lower is better) Translates to: TRTLIDHLPWVD*LAVHGETACIC Trigger: ACATATACATGCGGTCTCTCCATGCACTGCAAGCCAGTCAACCCATGGTAAGTGGTCAATCAGGGTTCGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CAA 90 bp | CTGGAGGCAAGCACTTCAGCATTTCATCTGTTTGGGATGGAGCTATaGGTGTCTTCTTGTGTGCTGACCACGGCTTACCTGCTCTCAATT | + |
|
Preference number: 6 (lower is better) Translates to: LEASTSAFHLFGMEL*VSSCVLTTAYLLSI Trigger: AATTGAGAGCAGGTAAGCCGTGGTCAGCACACAAGAAGACACCAATAGCTCCATCCCAAACAGATGAAATGCTGAAGTGCTTGCCTCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS TCA 72 bp | ACAAGACCCAGAACCGGTCCACAGAGGACCATAGAGTaGGGTATAAATGCACATGTGCTAATCAAGCCGAGA | + |
|
Preference number: 6 (lower is better) Translates to: TRPRTGPQRTIE*GINAHVLIKPR Trigger: TCTCGGCTTGATTAGCACATGTGCATTTATACCTCACTCTATGGTCCTCTGTGGACCGGTTCTGGGTCTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS GCA 72 bp | AACAATAACCCTGACAAGTACAGGTATCTAGTGACTTaGGCATCACTGGCAGCGTGTAACCCTTTCCGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: NNNPDKYRYLVT*ASLAACNPFRH Trigger: ATGCCGGAAAGGGTTACACGCTGCCAGTGATGCGCAAGTCACTAGATACCTGTACTTGTCAGGGTTATTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CAA 72 bp | AGCACTTCAGCATTTCATCTGTTTGGGATGGAGCTATaGGTGTCTTCTTGTGTGCTGACCACGGCTTACCTG | + |
|
Preference number: 6 (lower is better) Translates to: STSAFHLFGMEL*VSSCVLTTAYL Trigger: CAGGTAAGCCGTGGTCAGCACACAAGAAGACACCAATAGCTCCATCCCAAACAGATGAAATGCTGAAGTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CCA 72 bp | GGCTTGCAGTGCATGGAGAGACCGCATGTATATGTGTaGGAAACTGTCCTTTCCCTTCTTAGGCTTATAAAG | + |
|
Preference number: 6 (lower is better) Translates to: GLQCMERPHVYV*ETVLSLLRLIK Trigger: CTTTATAAGCCTAAGAAGGGAAAGGACAGTTTCCCACACATATACATGCGGTCTCTCCATGCACTGCAAGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS TCA 72 bp | GAATTGAGAACAAACTCCGAGCCAGCCGATGAAAACTaGGGCTGGAGGATTTCTGTTACTATCACCATCCTA | + |
|
Preference number: 6 (lower is better) Translates to: ELRTNSEPADEN*GWRISVTITIL Trigger: TAGGATGGTGATAGTAACAGAAATCCTCCAGCCTCAGTTTTCATCGGCTGGCTCGGAGTTTGTTCTCAATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS GCA 72 bp | AACCGGTCCACAGAGGACCATAGAGTGAGGTATAAATaGACATGTGCTAATCAAGCCGAGATGAACATACCT | + |
|
Preference number: 6 (lower is better) Translates to: NRSTEDHRVRYK*TCANQAEMNIP Trigger: AGGTATGTTCATCTCGGCTTGATTAGCACATGTGCATTTATACCTCACTCTATGGTCCTCTGTGGACCGGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CCA 72 bp | TTCTGTTACTATCACCATCCTAATGTCACCATCTGCTaGGCAGTACATAGAAAAGTCCCTGGGAAGCACAAG | + |
|
Preference number: 6 (lower is better) Translates to: FCYYHHPNVTIC*AVHRKVPGKHK Trigger: CTTGTGCTTCCCAGGGACTTTTCTATGTACTGCCCAGCAGATGGTGACATTAGGATGGTGATAGTAACAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS CAA 72 bp | ATTTCATCTGTTTGGGATGGAGCTATTGGTGTCTTCTaGTGTGCTGACCACGGCTTACCTGCTCTCAATTCT | + |
|
Preference number: 6 (lower is better) Translates to: ISSVWDGAIGVF*CADHGLPALNS Trigger: AGAATTGAGAGCAGGTAAGCCGTGGTCAGCACACAAGAAGACACCAATAGCTCCATCCCAAACAGATGAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS TCA 72 bp | AAACTCCGGTCTACAATACAACCTAGGGTTTGTGTCTaGAACGTTTGCAGAGCCTGGGAAATAGATTTCCAC | + |
|
Preference number: 6 (lower is better) Translates to: KLRSTIQPRVCV*NVCRAWEIDFH Trigger: GTGGAAATCTATTTCCCAGGCTCTGCAAACGTTTCAGACACAAACCCTAGGTTGTATTGTAGACCGGAGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS TCA 72 bp | AGGCCTGTCACGCCAACATTCAACTCTGCAAAACAGTaGTCCAACAACTCAAATACTTCAACCCCACTTTCA | + |
|
Preference number: 6 (lower is better) Translates to: RPVTPTFNSAKQ*SNNSNTSTPLS Trigger: TGAAAGTGGGGTTGAAGTATTTGAGTTGTTGGATCACTGTTTTGCAGAGTTGAATGTTGGCGTGACAGGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
||
| CDS GCA 72 bp | CTTCAGTGGATGAAGAAAAGACAGACAGGTAGTGCCTaGTTAAACTCCGGTCTACAATACAACCTAGGGTTT | + |
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Preference number: 6 (lower is better) Translates to: LQWMKKRQTGSA*LNSGLQYNLGF Trigger: AAACCCTAGGTTGTATTGTAGACCGGAGTTTAAGCAGGCACTACCTGTCTGTCTTTTCTTCATCCACTGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS CAA 72 bp | GCTATTAAGTCTTGCACAGTAAATAACCAGGTCTGGTaGCTTCACACTGGTCAGGAGCAGTTTTACATTCTG | + |
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Preference number: 6 (lower is better) Translates to: AIKSCTVNNQVW*LHTGQEQFYIL Trigger: CAGAATGTAAAACTGCTCCTGACCAGTGTGAAGCAACCAGACCTGGTTATTTACTGTGCAAGACTTAATAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS TCA 72 bp | AGCCATACACTTGAAAACGTAGTCACACATCAACTGTaGAATGAATCTGTGATTGTTTCTTCCCACTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: SHTLENVVTHQL*NESVIVSSHSS Trigger: GGAAGAGTGGGAAGAAACAATCACAGATTCATTTCACAGTTGATGTGTGACTACGTTTTCAAGTGTATGGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS TCA 72 bp | TTCTGCTGTAGGATTTCCAGTGGAATGATTCTCAATTaGCAGGTCACAGTTATCAATTATCCCGCTTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: FCCRISSGMILN*QVTVINYPASF Trigger: GAAAGAAGCGGGATAATTGATAACTGTGACCTGTCAATTGAGAATCATTCCACTGGAAATCCTACAGCAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS TCA 72 bp | GTTCCAGTGTCTTCTGCTGTAGGATTTCCAGTGGAATaGTTCTCAATTGACAGGTCACAGTTATCAATTATC | + |
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Preference number: 6 (lower is better) Translates to: VPVSSAVGFPVE*FSIDRSQLSII Trigger: GATAATTGATAACTGTGACCTGTCAATTGAGAATCATTCCACTGGAAATCCTACAGCAGAAGACACTGGAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS CCA 72 bp | TATGCTATTAAGTCTTGCACAGTAAATAACCAGGTCTaGTTGCTTCACACTGGTCAGGAGCAGTTTTACATT | + |
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Preference number: 6 (lower is better) Translates to: YAIKSCTVNNQV*LLHTGQEQFYI Trigger: AATGTAAAACTGCTCCTGACCAGTGTGAAGCAACCAGACCTGGTTATTTACTGTGCAAGACTTAATAGCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS TCA 72 bp | CAGTTTCATCTGATTGTCGGCATTGTTTGGCATAGCTaGGAAGGTAGTAACTCATCAAAATCTCAAAACTTC | + |
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Preference number: 6 (lower is better) Translates to: QFHLIVGIVWHS*EGSNSSKSQNF Trigger: GAAGTTTTGAGATTTTGATGAGTTACTACCTTCTCAGCTATGCCAAACAATGCCGACAATCAGATGAAACTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS CCA 72 bp | ATTACGCTCTCTGCTATTGTCATAAGCAAGAGGACTTaGGTTACATTGCTGTTTGGTTTGTATGATGTAATT | + |
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Preference number: 6 (lower is better) Translates to: ITLSAIVISKRT*VTLLFGLYDVI Trigger: AATTACATCATACAAACCAAACAGCAATGTAACCCAAGTCCTCTTGCTTATGACAATAGCAGAGAGCGTAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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| CDS TCA 72 bp | GAAGCCCCCAAACCTGAATATACTTCTAAATGTGTTTaGGTTTCCAATTTATTTTTGCTCTTTGCTACTATG | + |
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Preference number: 6 (lower is better) Translates to: EAPKPEYTSKCV*VSNLFLLFATM Trigger: CATAGTAGCAAAGAGCAAAAATAAATTGGAAACTCAAACACATTTAGAAGTATATTCAGGTTTGGGGGCTTC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040454.5 |
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