RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BBS1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006464

Ensembl transcript IDs: ENSMUST00000053506.8, ENSMUST00000237085.2, ENSMUST00000237362.2, ENSMUST00000238170.2

Found 356 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGCGCAGGGCTCAGGCAGCTGCCAGACCCTCACTCACAGGCATGTTaGTGTGGGCACTCAGCAGGGGAGCACTCTGGCCTTCCCGAAGCA +
Preference number: 1 (lower is better)
Translates to: GAGLRQLPDPHSQAC*CGHSAGEHSGLPEA
Trigger: TGCTTCGGGAAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACATGCCTGTGAGTGAGGGTCTGGCAGCTGCCTGAGCCCTGCGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR CCA 90 bp TTGACATGGGGCTCAGGCTGGACTCCAGGGCCTGGACATAGGCTCTaGCAGCTCGCAGGCGCAGCAGGTAGAGGTCGGTCTGGAAGGTCC +
Preference number: 1 (lower is better)
Translates to: LTWGSGWTPGPGHRL*QLAGAAGRGRSGRS
Trigger: GGACCTTCCAGACCGACCTCTACCTGCTGCGCCTGCGAGCTGCCAGAGCCTATGTCCAGGCCCTGGAGTCCAGCCTGAGCCCCATGTCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR TCA 90 bp CCCGCAGGGTCTGATCCACATACAGCCGGGTCTTTCGGGGCACACTaGGTTTTGTGGTCTGTGCTAGCGGTGGGCCCACCTCACCCGTCC +
Preference number: 1 (lower is better)
Translates to: PAGSDPHTAGSFGAH*VLWSVLAVGPPHPS
Trigger: GGACGGGTGAGGTGGGCCCACCGCTAGCACAGACCACAAAACTCAGTGTGCCCCGAAAGACCCGGCTGTATGTGGATCAGACCCTGCGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CCA 90 bp AGGGCTCAGGCAGCTGCCAGACCCTCACTCACAGGCATGTTGATGTaGGCACTCAGCAGGGGAGCACTCTGGCCTTCCCGAAGCACTAGC +
Preference number: 1 (lower is better)
Translates to: RAQAAARPSLTGMLM*ALSRGALWPSRSTS
Trigger: GCTAGTGCTTCGGGAAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACATGCCTGTGAGTGAGGGTCTGGCAGCTGCCTGAGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
3UTR CCA 90 bp GGTGCTGCCCACCACCAGGACCTTGTGTACCCGGACCAGCCCCACTaGCTGGGCACTCAACTCGATGCAGTACTTGGGGTGTTTGGAGTC +
Preference number: 1 (lower is better)
Translates to: GAAHHQDLVYPDQPH*LGTQLDAVLGVFGV
Trigger: GACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR TCA 90 bp AAGGTCCGGTGCATGGCTGTGCCAGCTTCCCGCTCCCGCAGGGTCTaGTCCACATACAGCCGGGTCTTTCGGGGCACACTGAGTTTTGTG +
Preference number: 1 (lower is better)
Translates to: KVRCMAVPASRSRRV*STYSRVFRGTLSFV
Trigger: CACAAAACTCAGTGTGCCCCGAAAGACCCGGCTGTATGTGGATCAGACCCTGCGGGAGCGGGAAGCTGGCACAGCCATGCACCGGACCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR GCA 90 bp GGGTTCCGAGGAGGAGGAGCTGATTCCGAGCACCCCGTGTCTTGTTaGTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGACTGTGTCAGA +
Preference number: 1 (lower is better)
Translates to: GFRGGGADSEHPVSC*SGHWQRWGARDCVR
Trigger: TCTGACACAGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCTCGGAATCAGCTCCTCCTCCTCGGAACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 90 bp GCCTCTTGGGTCACTTCCCAGGTCCCAGGTCCAGACCTCTCCCAGTaGCACCAGCCCCAGCTCCGCTATCTAGCTCCGCATTCCATTTCA +
Preference number: 1 (lower is better)
Translates to: ASWVTSQVPGPDLSQ*HQPQLRYLAPHSIS
Trigger: TGAAATGGAATGCGGAGCTAGATAGCGGAGCTGGGGCTGGTGGCACTGGGAGAGGTCTGGACCTGGGACCTGGGAAGTGACCCAAGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp AGAACAGTGCCTCTGGCCATGAGCACCCATGTCGGGAGCAGCTGCTaGCTGTGTGGCTCTAGCTCCTCACACGGACCCCGTCTACTTCTG +
Preference number: 1 (lower is better)
Translates to: RTVPLAMSTHVGSSC*LCGSSSSHGPRLLL
Trigger: CAGAAGTAGACGGGGTCCGTGTGAGGAGCTAGAGCCACACAGCCAGCAGCTGCTCCCGACATGGGTGCTCATGGCCAGAGGCACTGTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp TGTCTCTTAGCCTGGGCCCTGAAGTACCCTTTGAAAGGGTCACCCTaGTCCCCGAGTGGGCGCAGAGGCTGTTACTGGGCAGTGGTGGTC +
Preference number: 1 (lower is better)
Translates to: CLLAWALKYPLKGSP*SPSGRRGCYWAVVV
Trigger: GACCACCACTGCCCAGTAACAGCCTCTGCGCCCACTCGGGGACCAGGGTGACCCTTTCAAAGGGTACTTCAGGGCCCAGGCTAAGAGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp GTCCACAGCTTCTTACCCTTGTGGGTGAAGCCATGCAGACTCTCTTaGGTGCTGCCCACCACCAGGACCTTGTGTACCCGGACCAGCCCC +
Preference number: 1 (lower is better)
Translates to: VHSFLPLWVKPCRLS*VLPTTRTLCTRTSP
Trigger: GGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAGGGTAAGAAGCTGTGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR GCA 90 bp TTCAGAACAGTGCCTCTGGCCATGAGCACCCATGTCGGGAGCAGCTaGTGGCTGTGTGGCTCTAGCTCCTCACACGGACCCCGTCTACTT +
Preference number: 1 (lower is better)
Translates to: FRTVPLAMSTHVGSS*WLCGSSSSHGPRLL
Trigger: AAGTAGACGGGGTCCGTGTGAGGAGCTAGAGCCACACAGCCAGCAGCTGCTCCCGACATGGGTGCTCATGGCCAGAGGCACTGTTCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp CTGCCCACCACCAGGACCTTGTGTACCCGGACCAGCCCCACTGGCTaGGCACTCAACTCGATGCAGTACTTGGGGTGTTTGGAGTCTCTT +
Preference number: 1 (lower is better)
Translates to: LPTTRTLCTRTSPTG*ALNSMQYLGCLESL
Trigger: AAGAGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CCA 90 bp CTTGCAGGCCTCGGGATCGCTGCTCCAGGAGGTTCATGGTCAGGATaGCTGCAGGCATCTGCACTGTCCACAGCTTCTTACCCTTGTGGG +
Preference number: 1 (lower is better)
Translates to: LAGLGIAAPGGSWSG*LQASALSTASYPCG
Trigger: CCCACAAGGGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR TCA 90 bp CCTCTGTCTCCTGGGATGAAAGGCAGGAGTCACCTTCCCTGGGCCTaGGCTTCTCACGGTCACTGTGCTCCAAGGTCCAGATCAAAGCCC +
Preference number: 1 (lower is better)
Translates to: PLSPGMKGRSHLPWA*ASHGHCAPRSRSKP
Trigger: GGGCTTTGATCTGGACCTTGGAGCACAGTGACCGTGAGAAGCTCAGGCCCAGGGAAGGTGACTCCTGCCTTTCATCCCAGGAGACAGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR TCA 90 bp CCTTGTCTCGGTAAATTCGGACTTCCCCATTGGCCAGAGCAGCCATaGCAGCTTGCAGGCCTCGGGATCGCTGCTCCAGGAGGTTCATGG +
Preference number: 1 (lower is better)
Translates to: PCLGKFGLPHWPEQP*QLAGLGIAAPGGSW
Trigger: CCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR GCA 90 bp GAGCTTCTCACGGTCACTGTGCTCCAAGGTCCAGATCAAAGCCCGTaGCTTCCAGCCTCCAGCTCTGGAGCACAGGGTGCTCCAATTCTG +
Preference number: 1 (lower is better)
Translates to: ELLTVTVLQGPDQSP*LPASSSGAQGAPIL
Trigger: CAGAATTGGAGCACCCTGTGCTCCAGAGCTGGAGGCTGGAAGGCACGGGCTTTGATCTGGACCTTGGAGCACAGTGACCGTGAGAAGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 90 bp CAGGCCTCGGGATCGCTGCTCCAGGAGGTTCATGGTCAGGATGGCTaGAGGCATCTGCACTGTCCACAGCTTCTTACCCTTGTGGGTGAA +
Preference number: 1 (lower is better)
Translates to: QASGSLLQEVHGQDG*RHLHCPQLLTLVGE
Trigger: TTCACCCACAAGGGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CCA 90 bp GATTCCGAGCACCCCGTGTCTTGTTGCTCAGGTCACTGGCAGAGGTaGGGAGCAAGGGACTGTGTCAGAGAAGAACAGGGAGCTGCTGTC +
Preference number: 1 (lower is better)
Translates to: DSEHPVSCCSGHWQR*GARDCVREEQGAAV
Trigger: GACAGCAGCTCCCTGTTCTTCTCTGACACAGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCTCGGAATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp GGAGGAGCTGATTCCGAGCACCCCGTGTCTTGTTGCTCAGGTCACTaGCAGAGGTGGGGAGCAAGGGACTGTGTCAGAGAAGAACAGGGA +
Preference number: 1 (lower is better)
Translates to: GGADSEHPVSCCSGH*QRWGARDCVREEQG
Trigger: TCCCTGTTCTTCTCTGACACAGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCTCGGAATCAGCTCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp CTCCCATTTCGGCAGGCAGCAGTCAACCGGAACTCCACATCAAACTaGCCGGAAACCTCCAGGAAGACAGGGACACTGGGCAGGCTCATC +
Preference number: 1 (lower is better)
Translates to: LPFRQAAVNRNSTSN*PETSRKTGTLGRLI
Trigger: GATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR TCA 90 bp CGCTATCTAGCTCCGCATTCCATTTCAGAACAGTGCCTCTGGCCATaGGCACCCATGTCGGGAGCAGCTGCTGGCTGTGTGGCTCTAGCT +
Preference number: 1 (lower is better)
Translates to: RYLAPHSISEQCLWP*APMSGAAAGCVALA
Trigger: AGCTAGAGCCACACAGCCAGCAGCTGCTCCCGACATGGGTGCTCATGGCCAGAGGCACTGTTCTGAAATGGAATGCGGAGCTAGATAGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 90 bp CAGCAAATCTGTCTGCTGGCTCAAGTGACAGGCTCCCGGCTTACCTaGCAAAGGAATGGCAAGGCTGGGGGTCTCTGCTGTGCTAACACC +
Preference number: 1 (lower is better)
Translates to: QQICLLAQVTGSRLT*QRNGKAGGLCCANT
Trigger: GGTGTTAGCACAGCAGAGACCCCCAGCCTTGCCATTCCTTTGGCAGGTAAGCCGGGAGCCTGTCACTTGAGCCAGCAGACAGATTTGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
3UTR TCA 90 bp GTTGTACAGGAAGCAGACATGCAGCCCCAGAACGGGTCGAGCCGTTaGGGTATTCTGCAGGTGAAGTGTGAGCTTAAAGGTGGGGCCCAG +
Preference number: 1 (lower is better)
Translates to: VVQEADMQPQNGSSR*GILQVKCELKGGAQ
Trigger: CTGGGCCCCACCTTTAAGCTCACACTTCACCTGCAGAATACCTCAACGGCTCGACCCGTTCTGGGGCTGCATGTCTGCTTCCTGTACAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR GCA 90 bp GATCGCTGCTCCAGGAGGTTCATGGTCAGGATGGCTGCAGGCATCTaGACTGTCCACAGCTTCTTACCCTTGTGGGTGAAGCCATGCAGA +
Preference number: 1 (lower is better)
Translates to: DRCSRRFMVRMAAGI*TVHSFLPLWVKPCR
Trigger: TCTGCATGGCTTCACCCACAAGGGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR TCA 90 bp TCAGTCTTCGGCTTTATGCCACACCCCTGGTGTGCACCTTTTCCGTaGGCTCAGGCATCTTCTGGCCACTGCACAGTGAACATTCCACCC +
Preference number: 1 (lower is better)
Translates to: SVFGFMPHPWCAPFP*AQASSGHCTVNIPP
Trigger: GGGTGGAATGTTCACTGTGCAGTGGCCAGAAGATGCCTGAGCTCACGGAAAAGGTGCACACCAGGGGTGTGGCATAAAGCCGAAGACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 90 bp CCTTGTGTACCCGGACCAGCCCCACTGGCTGGGCACTCAACTCGATaGAGTACTTGGGGTGTTTGGAGTCTCTTCTCAGGATATAGATGC +
Preference number: 1 (lower is better)
Translates to: PCVPGPAPLAGHSTR*STWGVWSLFSGYRC
Trigger: GCATCTATATCCTGAGAAGAGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CCA 90 bp AGCCCTGAGGAGGAATGCCCGTTACCCCCACCTCAGAGTAACAACTaGGACAGAGCACAGAAGACATGGGAGCTTCGCCTACAGGAAAAC +
Preference number: 1 (lower is better)
Translates to: SPEEECPLPPPQSNN*DRAQKTWELRLQEN
Trigger: GTTTTCCTGTAGGCGAAGCTCCCATGTCTTCTGTGCTCTGTCCCAGTTGTTACTCTGAGGTGGGGGTAACGGGCATTCCTCCTCAGGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp GCCCCACTGGCTGGGCACTCAACTCGATGCAGTACTTGGGGTGTTTaGAGTCTCTTCTCAGGATATAGATGCTCCCATTTCGGCAGGCAG +
Preference number: 1 (lower is better)
Translates to: APLAGHSTRCSTWGV*SLFSGYRCSHFGRQ
Trigger: CTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAGAGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CCA 90 bp CCCGGACCAGCCCCACTGGCTGGGCACTCAACTCGATGCAGTACTTaGGGTGTTTGGAGTCTCTTCTCAGGATATAGATGCTCCCATTTC +
Preference number: 1 (lower is better)
Translates to: PGPAPLAGHSTRCST*GVWSLFSGYRCSHF
Trigger: GAAATGGGAGCATCTATATCCTGAGAAGAGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR TCA 90 bp TGGAAGTCACTGAATCCGAAAGGCTCCATTTTGTTTGTGGAGACTTaGATGCTGGCGCAGGGCTCAGGCAGCTGCCAGACCCTCACTCAC +
Preference number: 1 (lower is better)
Translates to: WKSLNPKGSILFVET*MLAQGSGSCQTLTH
Trigger: GTGAGTGAGGGTCTGGCAGCTGCCTGAGCCCTGCGCCAGCATTCAAGTCTCCACAAACAAAATGGAGCCTTTCGGATTCAGTGACTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR GCA 90 bp GCGTGGTCCAGCTGTGCCTCACTGGATGATGCACAAAGAACCCTTTaGTCTCCTTGCTCAGGTAGTACTGTCTTGAGGGGGATGGGCAAT +
Preference number: 1 (lower is better)
Translates to: AWSSCASLDDAQRTL*SPCSGSTVLRGMGN
Trigger: ATTGCCCATCCCCCTCAAGACAGTACTACCTGAGCAAGGAGAGCAAAGGGTTCTTTGTGCATCATCCAGTGAGGCACAGCTGGACCACGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR TCA 90 bp AGTGATTCAGAACAGCCTCTGAGGAGGGCCAGGGGCCCTGACCCTTaGGATCTAAGCACATCTACCTTCAGTCTTCGGCTTTATGCCACA +
Preference number: 1 (lower is better)
Translates to: SDSEQPLRRARGPDP*DLSTSTFSLRLYAT
Trigger: TGTGGCATAAAGCCGAAGACTGAAGGTAGATGTGCTTAGATCTCAAGGGTCAGGGCCCCTGGCCCTCCTCAGAGGCTGTTCTGAATCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp AATGCAGTCCTCTCAGTAGCGACCATCTGTCAGACAGAGCTTAACTaGAGCCCCAGAGAGAGAATAACAGCCAGCCCTGAGGAGGAATGC +
Preference number: 1 (lower is better)
Translates to: NAVLSVATICQTELN*SPRERITASPEEEC
Trigger: GCATTCCTCCTCAGGGCTGGCTGTTATTCTCTCTCTGGGGCTCCAGTTAAGCTCTGTCTGACAGATGGTCGCTACTGAGAGGACTGCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 90 bp CTTATCTGCTGCAACAGGGATCAACAGGTAATGTCTAAGGACTCTTaGCAAGGACCCAGCACCCATACTGGGCAGCTCACAACCACCTGT +
Preference number: 1 (lower is better)
Translates to: LICCNRDQQVMSKDS*QGPSTHTGQLTTTC
Trigger: ACAGGTGGTTGTGAGCTGCCCAGTATGGGTGCTGGGTCCTTGGCAAGAGTCCTTAGACATTACCTGTTGATCCCTGTTGCAGCAGATAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp TCCCATCTTCAGTTAGACCTCCAGCGTGGTCCAGCTGTGCCTCACTaGATGATGCACAAAGAACCCTTTGCTCTCCTTGCTCAGGTAGTA +
Preference number: 1 (lower is better)
Translates to: SHLQLDLQRGPAVPH*MMHKEPFALLAQVV
Trigger: TACTACCTGAGCAAGGAGAGCAAAGGGTTCTTTGTGCATCATCCAGTGAGGCACAGCTGGACCACGCTGGAGGTCTAACTGAAGATGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 90 bp CGATGCAGTACTTGGGGTGTTTGGAGTCTCTTCTCAGGATATAGATaGTCCCATTTCGGCAGGCAGCAGTCAACCGGAACTCCACATCAA +
Preference number: 1 (lower is better)
Translates to: RCSTWGVWSLFSGYR*SHFGRQQSTGTPHQ
Trigger: TTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAGAGACTCCAAACACCCCAAGTACTGCATCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CCA 90 bp CCTCTTCAGTTGAGAAAGCTTAGCACATGTGCCTATAAACCAAGCTaGCAGCACCCACACCCCTGCAACTTCAAAGGACAGCAGAGGATC +
Preference number: 1 (lower is better)
Translates to: PLQLRKLSTCAYKPS*QHPHPCNFKGQQRI
Trigger: GATCCTCTGCTGTCCTTTGAAGTTGCAGGGGTGTGGGTGCTGCCAGCTTGGTTTATAGGCACATGTGCTAAGCTTTCTCAACTGAAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp GCTACTGAGACTCTCCACAAAGGTTTCCAGTGGGTAACTGAGTCCTaGTACCAGCAAGGGAACCTTAAAGAAAGCCTGAGGCAGGGCATA +
Preference number: 1 (lower is better)
Translates to: ATETLHKGFQWVTES*YQQGNLKESLRQGI
Trigger: TATGCCCTGCCTCAGGCTTTCTTTAAGGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CCA 90 bp CCTGGGTACGTTTTACCCAATGAGGGCGGAAGAAGAAAGAAGACATaGGACCCAGGAATCAGGGGATCTAACAGGAGAAGGAATTCTCTT +
Preference number: 1 (lower is better)
Translates to: PGYVLPNEGGRRKKT*DPGIRGSNRRRNSL
Trigger: AAGAGAATTCCTTCTCCTGTTAGATCCCCTGATTCCTGGGTCCCATGTCTTCTTTCTTCTTCCGCCCTCATTGGGTAAAACGTACCCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR TCA 90 bp AGCTGTGAATGGGAAGTCCAAGAGTCTAGTAGTTGCTCAGTCCCATaGGGCTGGGTGTTTCAGCTGGTCTTTTGTATAAGCTGGAATCCT +
Preference number: 1 (lower is better)
Translates to: SCEWEVQESSSCSVP*GWVFQLVFCISWNP
Trigger: AGGATTCCAGCTTATACAAAAGACCAGCTGAAACACCCAGCCTCATGGGACTGAGCAACTACTAGACTCTTGGACTTCCCATTCACAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp TGCTGTCTCACTACATTGCTACCGGGGGAAGTAGTCTGGCAATACTaGAAGTCACTGAATCCGAAAGGCTCCATTTTGTTTGTGGAGACT +
Preference number: 1 (lower is better)
Translates to: CCLTTLLPGEVVWQY*KSLNPKGSILFVET
Trigger: AGTCTCCACAAACAAAATGGAGCCTTTCGGATTCAGTGACTTCCAGTATTGCCAGACTACTTCCCCCGGTAGCAATGTAGTGAGACAGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
3UTR TCA 90 bp AGACTTTCACGAATCAATATAAACAGCAATGTAAACAGTGGGCACTaGCTACCTAAAGCATGGAGAGCAGGGGAGGGGTCTCAAGAGCAC +
Preference number: 1 (lower is better)
Translates to: RLSRININSNVNSGH*LPKAWRAGEGSQEH
Trigger: GTGCTCTTGAGACCCCTCCCCTGCTCTCCATGCTTTAGGTAGTCAGTGCCCACTGTTTACATTGCTGTTTATATTGATTCGTGAAAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp AGGCAAAGAAGCAGCAAGCCTTCCTTCTTCCATTGTCCTTATTTATaGAGGCCTCCAGCAGAAAGTATGGCTGAGATTAAAGGTGTGCAC +
Preference number: 1 (lower is better)
Translates to: RQRSSKPSFFHCPYL*RPPAESMAEIKGVH
Trigger: GTGCACACCTTTAATCTCAGCCATACTTTCTGCTGGAGGCCTCCATAAATAAGGACAATGGAAGAAGGAAGGCTTGCTGCTTCTTTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp CCAGACTGTCACAACAGTGTCCAGACAAGCAGTGATATAAAGACTTaGGTGGTATCTTGTCAGGGTTCTCTAGAGTCACAGAACTTATGG +
Preference number: 1 (lower is better)
Translates to: PDCHNSVQTSSDIKT*VVSCQGSLESQNLW
Trigger: CCATAAGTTCTGTGACTCTAGAGAACCCTGACAAGATACCACCCAAGTCTTTATATCACTGCTTGTCTGGACACTGTTGTGACAGTCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 90 bp GGAATGTCTCTATATATTATGGGAATTTATTGGAATGACTCAGGCTaGAATCCAACTAACCAACAATGGGCAGCTGTGAATGGGAAGTCC +
Preference number: 1 (lower is better)
Translates to: GMSLYIMGIYWNDSG*NPTNQQWAAVNGKS
Trigger: GGACTTCCCATTCACAGCTGCCCATTGTTGGTTAGTTGGATTGCAGCCTGAGTCATTCCAATAAATTCCCATAATATATAGAGACATTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp AGTCACAGAACTTATGGAATGTCTCTATATATTATGGGAATTTATTaGAATGACTCAGGCTGCAATCCAACTAACCAACAATGGGCAGCT +
Preference number: 1 (lower is better)
Translates to: SHRTYGMSLYIMGIY*NDSGCNPTNQQWAA
Trigger: AGCTGCCCATTGTTGGTTAGTTGGATTGCAGCCTGAGTCATTCCAATAAATTCCCATAATATATAGAGACATTCCATAAGTTCTGTGACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 90 bp GGGTTCTCTAGAGTCACAGAACTTATGGAATGTCTCTATATATTATaGGAATTTATTGGAATGACTCAGGCTGCAATCCAACTAACCAAC +
Preference number: 1 (lower is better)
Translates to: GFSRVTELMECLYIL*EFIGMTQAAIQLTN
Trigger: GTTGGTTAGTTGGATTGCAGCCTGAGTCATTCCAATAAATTCCCATAATATATAGAGACATTCCATAAGTTCTGTGACTCTAGAGAACCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CAA 90 bp TGGCGCAGGGCTCAGGCAGCTGCCAGACCCTCACTCACAGGCATGTaGATGTGGGCACTCAGCAGGGGAGCACTCTGGCCTTCCCGAAGC +
Preference number: 2 (lower is better)
Translates to: WRRAQAAARPSLTGM*MWALSRGALWPSRS
Trigger: GCTTCGGGAAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACATGCCTGTGAGTGAGGGTCTGGCAGCTGCCTGAGCCCTGCGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR-3UTR TCA 90 bp TCCGAGCACCCCGTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGCAGGCAGCCGGAACTaGGGGACAGGGCTTGAGTGG +
Preference number: 2 (lower is better)
Translates to: SEHPVSCCSGHWQRWGARAGSRN*GTGLEW
Trigger: CCACTCAAGCCCTGTCCCTCAGTTCCGGCTGCCTGC...CCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCTCGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR TCA 90 bp GGGCCTGGACATAGGCTCTGGCAGCTCGCAGGCGCAGCAGGTAGAGGTCGGTCTGCAGAGGGGGCAACTTaGCCTCCCCTCTTCACTAGC +
Preference number: 2 (lower is better)
Translates to: GPGHRLWQLAGAAGRGRSAEGAT*PPLFTS
Trigger: GCTAGTGAAGAGGGGAGGTCAAGTTGCCCCCTCTGC...AGACCGACCTCTACCTGCTGCGCCTGCGAGCTGCCAGAGCCTATGTCCAGGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR GCA 90 bp GGGCCTGGACATAGGCTCTGGCAGCTCGCAGGCGCAGCAGGTAGAGGTCGGTCTGGCTCCCGGCTTACCTaGCAAAGGAATGGCAAGGCT +
Preference number: 2 (lower is better)
Translates to: GPGHRLWQLAGAAGRGRSGSRLT*QRNGKA
Trigger: AGCCTTGCCATTCCTTTGGCAGGTAAGCCGGGAGCC...AGACCGACCTCTACCTGCTGCGCCTGCGAGCTGCCAGAGCCTATGTCCAGGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR CCA 90 bp TCCGAGCACCCCGTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGGGACAGGGCTTGAGTaGGTTCCGAGGAGGAGGAGC +
Preference number: 2 (lower is better)
Translates to: SEHPVSCCSGHWQRWGARGTGLE*VPRRRS
Trigger: GCTCCTCCTCCTCGGAACCCACTCAAGCCCTGTCCC...CCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCTCGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CCA 90 bp CTGGAAGGTCCGGTGCATGGCTGTGCCAGCTTCCCGCTCCCGCAGGGTCTGATCGGCCAAAGCACAGGCTaGTTACTGCATCCGGGGCAT +
Preference number: 2 (lower is better)
Translates to: LEGPVHGCASFPLPQGLIGQSTG*LLHPGH
Trigger: ATGCCCCGGATGCAGTAACCAGCCTGTGCTTTGGCC...GATCAGACCCTGCGGGAGCGGGAAGCTGGCACAGCCATGCACCGGACCTTCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CAA 90 bp GTGAAGCCATGCAGACTCTCTTGGGTGCTGCCCACCACCAGGACCTaGTGTACCCGGACCAGCCCCACTGGCTGGGCACTCAACTCGATG +
Preference number: 2 (lower is better)
Translates to: VKPCRLSWVLPTTRT*CTRTSPTGWALNSM
Trigger: CATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR TCA 90 bp TCCGAGCACCCCGTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGCACTCACAGGCATGTTaGTGTGGGCACTCAGCAGGG +
Preference number: 2 (lower is better)
Translates to: SEHPVSCCSGHWQRWGARHSQAC*CGHSAG
Trigger: CCCTGCTGAGTGCCCACATCAACATGCCTGTGAGTG...CCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCTCGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR-3UTR GCA 90 bp CGGGTCTTTCGGGGCACACTGAGTTTTGTGGTCTGTGCTAGCGGTGGGCCCACCGACTCTCTTGGGTGCTaGCCACCACCAGGACCTTGT +
Preference number: 2 (lower is better)
Translates to: RVFRGTLSFVVCASGGPTDSLGC*PPPGPC
Trigger: ACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTC...GGTGGGCCCACCGCTAGCACAGACCACAAAACTCAGTGTGCCCCGAAAGACCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR CCA 90 bp CCTTTGAAAGGGTCACCCTGGTCCCCGAGTGGGCGCAGAGGCTGTTACTGGGCATGTTGCTCAGGTCACTaGCAGAGGTGGGGAGCAAGG +
Preference number: 2 (lower is better)
Translates to: PLKGSPWSPSGRRGCYWACCSGH*QRWGAR
Trigger: CCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACA...TGCCCAGTAACAGCCTCTGCGCCCACTCGGGGACCAGGGTGACCCTTTCAAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CAA 90 bp TTGGTCCAGACCCACTGTCTCTTAGCCTGGGCCCTGAAGTACCCTTaGAAAGGGTCACCCTGGTCCCCGAGTGGGCGCAGAGGCTGTTAC +
Preference number: 2 (lower is better)
Translates to: LVQTHCLLAWALKYP*KGSPWSPSGRRGCY
Trigger: GTAACAGCCTCTGCGCCCACTCGGGGACCAGGGTGACCCTTTCAAAGGGTACTTCAGGGCCCAGGCTAAGAGACAGTGGGTCTGGACCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CAA 90 bp TGTCCACAGCTTCTTACCCTTGTGGGTGAAGCCATGCAGACTCTCTaGGGTGCTGCCCACCACCAGGACCTTGTGTACCCGGACCAGCCC +
Preference number: 2 (lower is better)
Translates to: CPQLLTLVGEAMQTL*GAAHHQDLVYPDQP
Trigger: GGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAGGGTAAGAAGCTGTGGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR GCA 90 bp CCTTTGAAAGGGTCACCCTGGTCCCCGAGTGGGCGCAGAGGCTGTTACTGGGCACAGCACCCACACCCCTaGAACTTCAAAGGACAGCAG +
Preference number: 2 (lower is better)
Translates to: PLKGSPWSPSGRRGCYWAQHPHP*NFKGQQ
Trigger: CTGCTGTCCTTTGAAGTTGCAGGGGTGTGGGTGCTG...TGCCCAGTAACAGCCTCTGCGCCCACTCGGGGACCAGGGTGACCCTTTCAAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR GCA 90 bp GGTCCAGCTGTGCCTCACTGGATGATGCACAAAGAACCCTTTGCTCTCCTTGCTCCAGACCTCTCCCAGTaGCACCAGCCCCAGCTCCGC +
Preference number: 2 (lower is better)
Translates to: GPAVPHWMMHKEPFALLAPDLSQ*HQPQLR
Trigger: GCGGAGCTGGGGCTGGTGGCACTGGGAGAGGTCTGG...AGCAAGGAGAGCAAAGGGTTCTTTGTGCATCATCCAGTGAGGCACAGCTGGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CCA 90 bp ACAGGCATGTTGATGTGGGCACTCAGCAGGGGAGCACTCTGGCCTTCCCGAAGCTGTTGCTCAGGTCACTaGCAGAGGTGGGGAGCAAGG +
Preference number: 2 (lower is better)
Translates to: TGMLMWALSRGALWPSRSCCSGH*QRWGAR
Trigger: CCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACA...GCTTCGGGAAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACATGCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR-3UTR CCA 90 bp CTCCCAGTGCCACCAGCCCCAGCTCCGCTATCTAGCTCCGCATTCCATTTCAGAGGCTCGTCTAGGACCTaGGGACAGAGCCCCATGACT +
Preference number: 2 (lower is better)
Translates to: LPVPPAPAPLSSSAFHFRGSSRT*GQSPMT
Trigger: AGTCATGGGGCTCTGTCCCCAGGTCCTAGACGAGCC...TCTGAAATGGAATGCGGAGCTAGATAGCGGAGCTGGGGCTGGTGGCACTGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR TCA 90 bp GTCTCTTGTACTGGAGAGGAGGTGGAAGCTTGCAAGCCTAAGCTGGGTGCCACACTGAGGGACAGGGCTTaGGTGGGTTCCGAGGAGGAG +
Preference number: 2 (lower is better)
Translates to: VSCTGEEVEACKPKLGATLRDRA*VGSEEE
Trigger: CTCCTCCTCGGAACCCACTCAAGCCCTGTCCCTCAG...TGTGGCACCCAGCTTAGGCTTGCAAGCTTCCACCTCCTCTCCAGTACAAGAGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR GCA 90 bp CTCCCAGTGCCACCAGCCCCAGCTCCGCTATCTAGCTCCGCATTCCATTTCAGACACCCCGTGTCTTGTTaGTCAGGTCACTGGCAGAGG +
Preference number: 2 (lower is better)
Translates to: LPVPPAPAPLSSSAFHFRHPVSC*SGHWQR
Trigger: CCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTG...TCTGAAATGGAATGCGGAGCTAGATAGCGGAGCTGGGGCTGGTGGCACTGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR GCA 90 bp CTGGAAGGTCCGGTGCATGGCTGTGCCAGCTTCCCGCTCCCGCAGGGTCTGATCTTCTCAGGATATAGATaGTCCCATTTCGGCAGGCAG +
Preference number: 2 (lower is better)
Translates to: LEGPVHGCASFPLPQGLIFSGYR*SHFGRQ
Trigger: CTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAA...GATCAGACCCTGCGGGAGCGGGAAGCTGGCACAGCCATGCACCGGACCTTCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR CCA 90 bp TCCGAGCACCCCGTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGTCTGAAAGAGGTGAGTaGAAGGAAGGACGGACGGAC +
Preference number: 2 (lower is better)
Translates to: SEHPVSCCSGHWQRWGARSERGE*KEGRTD
Trigger: GTCCGTCCGTCCTTCCTTCCACTCACCTCTTTCAGA...CCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCTCGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CAA 90 bp TCGGTAAATTCGGACTTCCCCATTGGCCAGAGCAGCCATGACAGCTaGCAGGCCTCGGGATCGCTGCTCCAGGAGGTTCATGGTCAGGAT +
Preference number: 2 (lower is better)
Translates to: SVNSDFPIGQSSHDS*QASGSLLQEVHGQD
Trigger: ATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR GCA 90 bp CCTTTGAAAGGGTCACCCTGGTCCCCGAGTGGGCGCAGAGGCTGTTACTGGGCATTTCTCCTGAGGAGCTaGCAAGCTCTAATGGTGCCA +
Preference number: 2 (lower is better)
Translates to: PLKGSPWSPSGRRGCYWAFLLRS*QALMVP
Trigger: TGGCACCATTAGAGCTTGGCAGCTCCTCAGGAGAAA...TGCCCAGTAACAGCCTCTGCGCCCACTCGGGGACCAGGGTGACCCTTTCAAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR GCA 90 bp CTCACAGGCATGTTGATGTGGGCACTCAGCAGGGGAGCACTCTGGCCTTCCCGAGCACTAGGAGTTCCTTaGTCTCAGTGCCTAGCACCA +
Preference number: 2 (lower is better)
Translates to: LTGMLMWALSRGALWPSRALGVP*SQCLAP
Trigger: TGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGC...TCGGGAAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACATGCCTGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR GCA 90 bp AGGCATGTTGATGTGGGCACTCAGCAGGGGAGCACTCTGGCCTTCCCGAAGCACGGGCACTCAACTCGATaGAGTACTTGGGGTGTTTGG +
Preference number: 2 (lower is better)
Translates to: RHVDVGTQQGSTLAFPKHGHSTR*STWGVW
Trigger: CCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCC...GTGCTTCGGGAAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACATGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR CCA 90 bp AGGCTGGGGGTCTCTGCTGTGCTAACACCCTATCACAGCCCTGGGTCCCATAGTGGTTCATGGTCAGGATaGCTGCAGGCATCTGCACTG +
Preference number: 2 (lower is better)
Translates to: RLGVSAVLTPYHSPGSHSGSWSG*LQASAL
Trigger: CAGTGCAGATGCCTGCAGCCATCCTGACCATGAACC...ACTATGGGACCCAGGGCTGTGATAGGGTGTTAGCACAGCAGAGACCCCCAGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CAA 90 bp TTGGCCAAAATGGTGAAGGCCTCAGGGTCCAGCACTAGGAGTTCCTaGCTCTCAGTGCCTAGCACCAGACAGGACGCTGCGTCCTCATCT +
Preference number: 2 (lower is better)
Translates to: LAKMVKASGSSTRSS*LSVPSTRQDAASSS
Trigger: AGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR CCA 90 bp GAAAGGCTCCATTTTGTTTGTGGAGACTTGAATGCTGGCGCAGGGCTCAGGCAGGGTCACTGGCAGAGGTaGGGAGCAAGGGACTGTGTC +
Preference number: 2 (lower is better)
Translates to: ERLHFVCGDLNAGAGLRQGHWQR*GARDCV
Trigger: GACACAGTCCCTTGCTCCCCACCTCTGCCAGTGACC...CTGCCTGAGCCCTGCGCCAGCATTCAAGTCTCCACAAACAAAATGGAGCCTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR-3UTR CCA 90 bp CTAGGGGAGTCTGCACAGAAGCAAGTTAGAAAGGAAGTGTCCCGCCCGAGAAATTCTCTTCCTGGGACCTaGGGAGTAGCAGGCAGCCGG +
Preference number: 2 (lower is better)
Translates to: LGESAQKQVRKEVSRPRNSLPGT*GVAGSR
Trigger: CCGGCTGCCTGCTACTCCCCAGGTCCCAGGAAGAGA...ATTTCTCGGGCGGGACACTTCCTTTCTAACTTGCTTCTGTGCAGACTCCCCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CCA 90 bp CCTGATCAGACTGGGGAAAATGTTGCTCTCCATGGAGCAGGGCTCCTGCTTCTCCCTCACATCTCTTCCTaGGACCTGGGGAGTAGCAGG +
Preference number: 2 (lower is better)
Translates to: PDQTGENVALHGAGLLLLPHISS*DLGSSR
Trigger: CCTGCTACTCCCCAGGTCCCAGGAAGAGATGTGAGG...GAGAAGCAGGAGCCCTGCTCCATGGAGAGCAACATTTTCCCCAGTCTGATCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CCA 90 bp AGCATGGAGAGCAGGGGAGGGGTCTCAAGAGCACCAAACGCTTATCTGCTGCAAGACCCCGTCTACTTCTaGCACCAGCTCCTCTGGCAA +
Preference number: 2 (lower is better)
Translates to: SMESRGGVSRAPNAYLLQDPVYF*HQLLWQ
Trigger: TTGCCAGAGGAGCTGGTGCCAGAAGTAGACGGGGTC...TTGCAGCAGATAAGCGTTTGGTGCTCTTGAGACCCCTCCCCTGCTCTCCATGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR TCA 90 bp GAGCTTAACTGGAGCCCCAGAGAGAGAATAACAGCCAGCCCTGAGGAGGAATGCTGTGCACCTTTTCCGTaGGCTCAGGCATCTTCTGGC +
Preference number: 2 (lower is better)
Translates to: ELNWSPRERITASPEEECCAPFP*AQASSG
Trigger: GCCAGAAGATGCCTGAGCTCACGGAAAAGGTGCACA...GCATTCCTCCTCAGGGCTGGCTGTTATTCTCTCTCTGGGGCTCCAGTTAAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR GCA 90 bp GAAAGGCTCCATTTTGTTTGTGGAGACTTGAATGCTGGCGCAGGGCTCAGGCAGGGCTCCCGGCTTACCTaGCAAAGGAATGGCAAGGCT +
Preference number: 2 (lower is better)
Translates to: ERLHFVCGDLNAGAGLRQGSRLT*QRNGKA
Trigger: AGCCTTGCCATTCCTTTGGCAGGTAAGCCGGGAGCC...CTGCCTGAGCCCTGCGCCAGCATTCAAGTCTCCACAAACAAAATGGAGCCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR-3UTR GCA 90 bp GCAGCAGTCAACCGGAACTCCACATCAAACTGGCCGGAAACCTCCAGGAAGACAGTTCCTTGCTCTCAGTaGCTAGCACCAGACAGGACG +
Preference number: 2 (lower is better)
Translates to: AAVNRNSTSNWPETSRKTVPCSQ*LAPDRT
Trigger: CGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAAC...TGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR GCA 90 bp ATCACAGCCCTGGGTCCCATAGTCTTCTCCAGCCTCATCCTACTGCTTCCCCAGTTGTGGGTGAAGCCATaGAGACTCTCTTGGGTGCTG +
Preference number: 2 (lower is better)
Translates to: ITALGPIVFSSLILLLPQLWVKP*RLSWVL
Trigger: CAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAA...CTGGGGAAGCAGTAGGATGAGGCTGGAGAAGACTATGGGACCCAGGGCTGTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR CCA 90 bp CTCACCCGTCCCTTCCACAAACACTGCTGTGCGCTTCAGGATCTTGATGATCAGGCTCCAGGAGGTTCATaGTCAGGATGGCTGCAGGCA +
Preference number: 2 (lower is better)
Translates to: LTRPFHKHCCALQDLDDQAPGGS*SGWLQA
Trigger: TGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGC...CTGATCATCAAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGGACGGGTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR CCA 90 bp AGGCTGGGGGTCTCTGCTGTGCTAACACCCTATCACAGCCCTGGGTCCCATAGTACCTTGGACTTGTGCTaGTTCACAAACGCCTCCATT +
Preference number: 2 (lower is better)
Translates to: RLGVSAVLTPYHSPGSHSTLDLC*FTNASI
Trigger: AATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGT...ACTATGGGACCCAGGGCTGTGATAGGGTGTTAGCACAGCAGAGACCCCCAGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CAA 90 bp ATCTTGATGATCAGGCCGCCACCTCTAGTAGTCATGATGAGGGTGTaGTCTTCTCGCCCGTATCGGCCAAAGCACAGGCTGGTTACTGCA +
Preference number: 2 (lower is better)
Translates to: ILMIRPPPLVVMMRV*SSRPYRPKHRLVTA
Trigger: TGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAGGTGGCGGCCTGATCATCAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR TCA 90 bp GTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGTTTGTTTGTGGAGACTTaGATGCTGGCGCAGGGCTCA +
Preference number: 2 (lower is better)
Translates to: VSEKNRELLSHYIATGGSLFVET*MLAQGS
Trigger: TGAGCCCTGCGCCAGCATTCAAGTCTCCACAAACAA...ACTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR-3UTR CCA 90 bp ATCCGAAAGGCTCCATTTTGTTTGTGGAGACTTGAATGCTGGCGCAGGGCTCAGTACCTGCCAAAGGAATaGCAAGGCTGGGGGTCTCTG +
Preference number: 2 (lower is better)
Translates to: IRKAPFCLWRLECWRRAQYLPKE*QGWGSL
Trigger: CAGAGACCCCCAGCCTTGCCATTCCTTTGGCAGGTA...CTGAGCCCTGCGCCAGCATTCAAGTCTCCACAAACAAAATGGAGCCTTTCGGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR-3UTR TCA 90 bp GGTCCAGCTGTGCCTCACTGGATGATGCACAAAGAACCCTTTGCTCTCCTTGCTCTCCTGCTTCTCAAGTaGTTCAGAACAGCCTCTGAG +
Preference number: 2 (lower is better)
Translates to: GPAVPHWMMHKEPFALLALLLLK*FRTASE
Trigger: CTCAGAGGCTGTTCTGAATCACTTGAGAAGCAGGAG...AGCAAGGAGAGCAAAGGGTTCTTTGTGCATCATCCAGTGAGGCACAGCTGGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CCA 90 bp GTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGACTGTGTCAGAGAGTAGTCTGGCAATACTaGAAGTCACTGAATCCGAAA +
Preference number: 2 (lower is better)
Translates to: VLLLRSLAEVGSKGLCQRVVWQY*KSLNPK
Trigger: TTTCGGATTCAGTGACTTCCAGTATTGCCAGACTAC...TCTCTGACACAGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
3UTR-3UTR CCA 90 bp CTCCCCTCTTCACTAGCAGCAAATCTGTCTGCTGGCTCAAGTGACAGGCTCCCGGTAGTCTGGCAATACTaGAAGTCACTGAATCCGAAA +
Preference number: 2 (lower is better)
Translates to: LPSSLAANLSAGSSDRLPVVWQY*KSLNPK
Trigger: TTTCGGATTCAGTGACTTCCAGTATTGCCAGACTAC...CGGGAGCCTGTCACTTGAGCCAGCAGACAGATTTGCTGCTAGTGAAGAGGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR-3UTR GCA 90 bp TGCAAGCAGGCAAAGAAGCAGCAAGCCTTCCTTCTTCCATTGTCCTTATTTATGGAGGAGGTGGAAGCTTaGAAGCCTAAGCTGGGTGCC +
Preference number: 2 (lower is better)
Translates to: CKQAKKQQAFLLPLSLFMEEVEA*KPKLGA
Trigger: GGCACCCAGCTTAGGCTTGCAAGCTTCCACCTCCTC...CATAAATAAGGACAATGGAAGAAGGAAGGCTTGCTGCTTCTTTGCCTGCTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CCA 90 bp CTAGGGGAGTCTGCACAGAAGCAAGTTAGAAAGGAAGTGTCCCGCCCGAGAAATTTTCACAGCATGACTTaGGTGAAAGGGACTGGGATG +
Preference number: 2 (lower is better)
Translates to: LGESAQKQVRKEVSRPRNFHSMT*VKGTGM
Trigger: CATCCCAGTCCCTTTCACCCAAGTCATGCTGTGAAA...ATTTCTCGGGCGGGACACTTCCTTTCTAACTTGCTTCTGTGCAGACTCCCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CAA 90 bp GATGCACAAAGAACCCTTTGCTCTCCTTGCTCAGGTAGTACTGTCTaGAGGGGGATGGGCAATATGAGAACGAGGATGTTTCTTTGGTCC +
Preference number: 2 (lower is better)
Translates to: DAQRTLCSPCSGSTV*RGMGNMRTRMFLWS
Trigger: GGACCAAAGAAACATCCTCGTTCTCATATTGCCCATCCCCCTCAAGACAGTACTACCTGAGCAAGGAGAGCAAAGGGTTCTTTGTGCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR GCA 90 bp GGCAGCTCACAACCACCTGTAACTCCAGCTCCTGGGGAATCCAAGGCCCTTTTCTCATGTTCTTTTATGTaGATAAGGTGCATGGCATAC +
Preference number: 2 (lower is better)
Translates to: GSSQPPVTPAPGESKALFSCSFM*IRCMAY
Trigger: GTATGCCATGCACCTTATGCACATAAAAGAACATGA...GAAAAGGGCCTTGGATTCCCCAGGAGCTGGAGTTACAGGTGGTTGTGAGCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CCA 90 bp TGCAAGCAGGCAAAGAAGCAGCAAGCCTTCCTTCTTCCATTGTCCTTATTTATGCACTGTCTCTTAGCCTaGGCCCTGAAGTACCCTTTG +
Preference number: 2 (lower is better)
Translates to: CKQAKKQQAFLLPLSLFMHCLLA*ALKYPL
Trigger: CAAAGGGTACTTCAGGGCCCAGGCTAAGAGACAGTG...CATAAATAAGGACAATGGAAGAAGGAAGGCTTGCTGCTTCTTTGCCTGCTTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CCA 90 bp GAGCTTAACTGGAGCCCCAGAGAGAGAATAACAGCCAGCCCTGAGGAGGAATGCATTATGGGAATTTATTaGAATGACTCAGGCTGCAAT +
Preference number: 2 (lower is better)
Translates to: ELNWSPRERITASPEEECIMGIY*NDSGCN
Trigger: ATTGCAGCCTGAGTCATTCCAATAAATTCCCATAAT...GCATTCCTCCTCAGGGCTGGCTGTTATTCTCTCTCTGGGGCTCCAGTTAAGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR GCA 90 bp TTACTAGGCAAGCATAGTATGACACTGTGTTTTATGGTAGGACCTGGTCATATGGCTCCTGGACCTAAGTaGACTCTGACAGGCTCTTGT +
Preference number: 2 (lower is better)
Translates to: LLGKHSMTLCFMVGPGHMAPGPK*TLTGSC
Trigger: ACAAGAGCCTGTCAGAGTGCACTTAGGTCCAGGAGC...CATATGACCAGGTCCTACCATAAAACACAGTGTCATACTATGCTTGCCTAGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CCA 90 bp TGCAAGCAGGCAAAGAAGCAGCAAGCCTTCCTTCTTCCATTGTCCTTATTTATGGCTGTTGTACAGGAATaGTCCTGTGGAATGGGAAGA +
Preference number: 2 (lower is better)
Translates to: CKQAKKQQAFLLPLSLFMAVVQE*SCGMGR
Trigger: TCTTCCCATTCCACAGGACCATTCCTGTACAACAGC...CATAAATAAGGACAATGGAAGAAGGAAGGCTTGCTGCTTCTTTGCCTGCTTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR GCA 90 bp TTACTAGGCAAGCATAGTATGACACTGTGTTTTATGGTAGGACCTGGTCATATGCCTTCCTGTTTACTGTaGAGGATAGGCTGGGGTTTG +
Preference number: 2 (lower is better)
Translates to: LLGKHSMTLCFMVGPGHMPSCLL*RIGWGL
Trigger: CAAACCCCAGCCTATCCTGCACAGTAAACAGGAAGG...CATATGACCAGGTCCTACCATAAAACACAGTGTCATACTATGCTTGCCTAGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR GCA 90 bp CTAGGGGAGTCTGCACAGAAGCAAGTTAGAAAGGAAGTGTCCCGCCCGAGAAATTTTATGTGCATAAGGTaGATGGCATACATTTCTTAC +
Preference number: 2 (lower is better)
Translates to: LGESAQKQVRKEVSRPRNFMCIR*MAYISY
Trigger: GTAAGAAATGTATGCCATGCACCTTATGCACATAAA...ATTTCTCGGGCGGGACACTTCCTTTCTAACTTGCTTCTGTGCAGACTCCCCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR GCA 90 bp CTAGGGGAGTCTGCACAGAAGCAAGTTAGAAAGGAAGTGTCCCGCCCGAGAAATAAAAGTCAAACCAAGTaGCAATTCCATGAAAACATC +
Preference number: 2 (lower is better)
Translates to: LGESAQKQVRKEVSRPRNKSQTK*QFHENI
Trigger: GATGTTTTCATGGAATTGGCACTTGGTTTGACTTTT...ATTTCTCGGGCGGGACACTTCCTTTCTAACTTGCTTCTGTGCAGACTCCCCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CCA 90 bp TTACTAGGCAAGCATAGTATGACACTGTGTTTTATGGTAGGACCTGGTCATATGAGCTCAGGCATCTTCTaGCCACTGCACAGTGAACAT +
Preference number: 2 (lower is better)
Translates to: LLGKHSMTLCFMVGPGHMSSGIF*PLHSEH
Trigger: ATGTTCACTGTGCAGTGGCCAGAAGATGCCTGAGCT...CATATGACCAGGTCCTACCATAAAACACAGTGTCATACTATGCTTGCCTAGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp GGCTCAGGCTGGACTCCAGGGCCTGGACATAGGCTCTaGCAGCTCGCAGGCGCAGCAGGTAGAGGTCGGTCT +
Preference number: 3 (lower is better)
Translates to: GSGWTPGPGHRL*QLAGAAGRGRS
Trigger: AGACCGACCTCTACCTGCTGCGCCTGCGAGCTGCCAGAGCCTATGTCCAGGCCCTGGAGTCCAGCCTGAGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CCA 72 bp GGGGCTCGCGAGCTGTGGTTGACATGGGGCTCAGGCTaGACTCCAGGGCCTGGACATAGGCTCTGGCAGCTC +
Preference number: 3 (lower is better)
Translates to: GARELWLTWGSG*TPGPGHRLWQL
Trigger: GAGCTGCCAGAGCCTATGTCCAGGCCCTGGAGTCCAGCCTGAGCCCCATGTCAACCACAGCTCGCGAGCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR TCA 72 bp CTTCCTGGGACCTGGGGAGTAGCAGGCAGCCGGAACTaGGGGACAGGGCTTGAGTGGGTTCCGAGGAGGAGG +
Preference number: 3 (lower is better)
Translates to: LPGTWGVAGSRN*GTGLEWVPRRR
Trigger: CCTCCTCCTCGGAACCCACTCAAGCCCTGTCCCTCAGTTCCGGCTGCCTGCTACTCCCCAGGTCCCAGGAAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 72 bp GTGCCTCTGGCCATGAGCACCCATGTCGGGAGCAGCTaGTGGCTGTGTGGCTCTAGCTCCTCACACGGACCC +
Preference number: 3 (lower is better)
Translates to: VPLAMSTHVGSS*WLCGSSSSHGP
Trigger: GGGTCCGTGTGAGGAGCTAGAGCCACACAGCCAGCAGCTGCTCCCGACATGGGTGCTCATGGCCAGAGGCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp CCTCTGGCCATGAGCACCCATGTCGGGAGCAGCTGCTaGCTGTGTGGCTCTAGCTCCTCACACGGACCCCGT +
Preference number: 3 (lower is better)
Translates to: PLAMSTHVGSSC*LCGSSSSHGPR
Trigger: ACGGGGTCCGTGTGAGGAGCTAGAGCCACACAGCCAGCAGCTGCTCCCGACATGGGTGCTCATGGCCAGAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp GCAGCAGGTAGAGGTCGGTCTGGAAGGTCCGGTGCATaGCTGTGCCAGCTTCCCGCTCCCGCAGGGTCTGAT +
Preference number: 3 (lower is better)
Translates to: AAGRGRSGRSGA*LCQLPAPAGSD
Trigger: ATCAGACCCTGCGGGAGCGGGAAGCTGGCACAGCCATGCACCGGACCTTCCAGACCGACCTCTACCTGCTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR TCA 72 bp GGGAGTAGCAGGCAGCCGGAACTGAGGGACAGGGCTTaGGTGGGTTCCGAGGAGGAGGAGCTGATTCCGAGC +
Preference number: 3 (lower is better)
Translates to: GSSRQPELRDRA*VGSEEEELIPS
Trigger: GCTCGGAATCAGCTCCTCCTCCTCGGAACCCACTCAAGCCCTGTCCCTCAGTTCCGGCTGCCTGCTACTCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp GCCTGGGCCCTGAAGTACCCTTTGAAAGGGTCACCCTaGTCCCCGAGTGGGCGCAGAGGCTGTTACTGGGCA +
Preference number: 3 (lower is better)
Translates to: AWALKYPLKGSP*SPSGRRGCYWA
Trigger: TGCCCAGTAACAGCCTCTGCGCCCACTCGGGGACCAGGGTGACCCTTTCAAAGGGTACTTCAGGGCCCAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CAA 90 bp CCTTTGAAAGGGTCACCCTGGTCCCCGAGTGGGCGCAGAGGCTGTTACTGGGCAGTCGGCATCTGCCTCTaGGGTCACTTCCCAGGTCCC +
Preference number: 3 (lower is better)
Translates to: PLKGSPWSPSGRRGCYWAVGICL*GHFPGP
Trigger: GGGACCTGGGAAGTGACCCAAGAGGCAGATGCCGAC...TGCCCAGTAACAGCCTCTGCGCCCACTCGGGGACCAGGGTGACCCTTTCAAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CAA 90 bp CTCGCAGGCGCAGCAGGTAGAGGTCGGTCTGGAAGGTCCGGTGCATGGCTGTGCCTGGGCAGGCTCATCTaGGCCAAAATGGTGAAGGCC +
Preference number: 3 (lower is better)
Translates to: LAGAAGRGRSGRSGAWLCLGRLI*AKMVKA
Trigger: GGCCTTCACCATTTTGGCCAAGATGAGCCTGCCCAG...GCACAGCCATGCACCGGACCTTCCAGACCGACCTCTACCTGCTGCGCCTGCGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR GCA 72 bp GGAGGAGGAGCTGATTCCGAGCACCCCGTGTCTTGTTaGTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGAC +
Preference number: 3 (lower is better)
Translates to: GGGADSEHPVSC*SGHWQRWGARD
Trigger: GTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCTCGGAATCAGCTCCTCCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 72 bp CGGACTTCCCCATTGGCCAGAGCAGCCATGACAGCTTaGAGGCCTCGGGATCGCTGCTCCAGGAGGTTCATG +
Preference number: 3 (lower is better)
Translates to: RTSPLARAAMTA*RPRDRCSRRFM
Trigger: CATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR GCA 72 bp CGGTGGGCCCACCTCACCCGTCCCTTCCACAAACACTaGTGTGCGCTTCAGGATCTTGATGATCAGGCCGCC +
Preference number: 3 (lower is better)
Translates to: RWAHLTRPFHKH*CALQDLDDQAA
Trigger: GGCGGCCTGATCATCAAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGGACGGGTGAGGTGGGCCCACCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CCA 72 bp CACCACCAGGACCTTGTGTACCCGGACCAGCCCCACTaGCTGGGCACTCAACTCGATGCAGTACTTGGGGTG +
Preference number: 3 (lower is better)
Translates to: HHQDLVYPDQPH*LGTQLDAVLGV
Trigger: CACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR TCA 72 bp GGGACAGGGCTTGAGTGGGTTCCGAGGAGGAGGAGCTaGTTCCGAGCACCCCGTGTCTTGTTGCTCAGGTCA +
Preference number: 3 (lower is better)
Translates to: GTGLEWVPRRRS*FRAPRVLLLRS
Trigger: TGACCTGAGCAACAAGACACGGGGTGCTCGGAATCAGCTCCTCCTCCTCGGAACCCACTCAAGCCCTGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR TCA 72 bp GAAGGAAGGACGGACGGACTGAGGCTATGCTCGCCCTaGCCACCTCACATCTCTTCCTGGGACCTGGGGAGT +
Preference number: 3 (lower is better)
Translates to: EGRTDGLRLCSP*PPHISSWDLGS
Trigger: ACTCCCCAGGTCCCAGGAAGAGATGTGAGGTGGTCAGGGCGAGCATAGCCTCAGTCCGTCCGTCCTTCCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR TCA 72 bp GTTGCTCTCCATGGAGCAGGGCTCCTGCTTCTCAAGTaGTTCAGAACAGCCTCTGAGGAGGGCCAGGGGCCC +
Preference number: 3 (lower is better)
Translates to: VALHGAGLLLLK*FRTASEEGQGP
Trigger: GGGCCCCTGGCCCTCCTCAGAGGCTGTTCTGAATCACTTGAGAAGCAGGAGCCCTGCTCCATGGAGAGCAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR TCA 72 bp CTCAGGCAGCTGCCAGACCCTCACTCACAGGCATGTTaGTGTGGGCACTCAGCAGGGGAGCACTCTGGCCTT +
Preference number: 3 (lower is better)
Translates to: LRQLPDPHSQAC*CGHSAGEHSGL
Trigger: AAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACATGCCTGTGAGTGAGGGTCTGGCAGCTGCCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
3UTR GCA 72 bp ACGGTCACTGTGCTCCAAGGTCCAGATCAAAGCCCGTaGCTTCCAGCCTCCAGCTCTGGAGCACAGGGTGCT +
Preference number: 3 (lower is better)
Translates to: TVTVLQGPDQSP*LPASSSGAQGA
Trigger: AGCACCCTGTGCTCCAGAGCTGGAGGCTGGAAGGCACGGGCTTTGATCTGGACCTTGGAGCACAGTGACCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp GTGCACTCTGACAGGCTCTTGTCGGCATCTGCCTCTTaGGTCACTTCCCAGGTCCCAGGTCCAGACCTCTCC +
Preference number: 3 (lower is better)
Translates to: VHSDRLLSASAS*VTSQVPGPDLS
Trigger: GGAGAGGTCTGGACCTGGGACCTGGGAAGTGACCCAAGAGGCAGATGCCGACAAGAGCCTGTCAGAGTGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp CGGCAGGCAGCAGTCAACCGGAACTCCACATCAAACTaGCCGGAAACCTCCAGGAAGACAGGGACACTGGGC +
Preference number: 3 (lower is better)
Translates to: RQAAVNRNSTSN*PETSRKTGTLG
Trigger: GCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR TCA 72 bp CCAACCTGGCCCCATGAGAGCACAGCCCCGCTCACATaGCACAGTGACAAGGGCTCAACAACTTGGACAGGC +
Preference number: 3 (lower is better)
Translates to: PTWPHESTAPLT*HSDKGSTTWTG
Trigger: GCCTGTCCAAGTTGTTGAGCCCTTGTCACTGTGTCATGTGAGCGGGGCTGTGCTCTCATGGGGCCAGGTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR TCA 72 bp GGTAAATTCGGACTTCCCCATTGGCCAGAGCAGCCATaGCAGCTTGCAGGCCTCGGGATCGCTGCTCCAGGA +
Preference number: 3 (lower is better)
Translates to: GKFGLPHWPEQP*QLAGLGIAAPG
Trigger: TCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR GCA 72 bp CCACCCTCAGGACCATCTCGGGCTCCTGGACCTAAGTaGACTCTGACAGGCTCTTGTCGGCATCTGCCTCTT +
Preference number: 3 (lower is better)
Translates to: PPSGPSRAPGPK*TLTGSCRHLPL
Trigger: AAGAGGCAGATGCCGACAAGAGCCTGTCAGAGTGCACTTAGGTCCAGGAGCCCGAGATGGTCCTGAGGGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 72 bp TGTCTGCTGGCTCAAGTGACAGGCTCCCGGCTTACCTaGCAAAGGAATGGCAAGGCTGGGGGTCTCTGCTGT +
Preference number: 3 (lower is better)
Translates to: CLLAQVTGSRLT*QRNGKAGGLCC
Trigger: ACAGCAGAGACCCCCAGCCTTGCCATTCCTTTGGCAGGTAAGCCGGGAGCCTGTCACTTGAGCCAGCAGACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
3UTR GCA 72 bp CCCGGACCAGCCCCACTGGCTGGGCACTCAACTCGATaGAGTACTTGGGGTGTTTGGAGTCTCTTCTCAGGA +
Preference number: 3 (lower is better)
Translates to: PGPAPLAGHSTR*STWGVWSLFSG
Trigger: TCCTGAGAAGAGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CCA 72 bp ACCAGGACCTTGTGTACCCGGACCAGCCCCACTGGCTaGGCACTCAACTCGATGCAGTACTTGGGGTGTTTG +
Preference number: 3 (lower is better)
Translates to: TRTLCTRTSPTG*ALNSMQYLGCL
Trigger: CAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR TCA 72 bp TTCCGTGAGCTCAGGCATCTTCTGGCCACTGCACAGTaGACATTCCACCCTCAGGACCATCTCGGGCTCCTG +
Preference number: 3 (lower is better)
Translates to: FRELRHLLATAQ*TFHPQDHLGLL
Trigger: CAGGAGCCCGAGATGGTCCTGAGGGTGGAATGTTCACTGTGCAGTGGCCAGAAGATGCCTGAGCTCACGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR TCA 72 bp TCTGATCCACATACAGCCGGGTCTTTCGGGGCACACTaGGTTTTGTGGTCTGTGCTAGCGGTGGGCCCACCT +
Preference number: 3 (lower is better)
Translates to: SDPHTAGSFGAH*VLWSVLAVGPP
Trigger: AGGTGGGCCCACCGCTAGCACAGACCACAAAACTCAGTGTGCCCCGAAAGACCCGGCTGTATGTGGATCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR GCA 72 bp CTTACCTGCCAAAGGAATGGCAAGGCTGGGGGTCTCTaGTGTGCTAACACCCTATCACAGCCCTGGGTCCCA +
Preference number: 3 (lower is better)
Translates to: LTCQRNGKAGGL*CANTLSQPWVP
Trigger: TGGGACCCAGGGCTGTGATAGGGTGTTAGCACAGCAGAGACCCCCAGCCTTGCCATTCCTTTGGCAGGTAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
3UTR CCA 72 bp GATTCCGAGCACCCCGTGTCTTGTTGCTCAGGTCACTaGCAGAGGTGGGGAGCAAGGGACTGTGTCAGAGAA +
Preference number: 3 (lower is better)
Translates to: DSEHPVSCCSGH*QRWGARDCVRE
Trigger: TTCTCTGACACAGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCTCGGAATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp TCACCCTGGTCCCCGAGTGGGCGCAGAGGCTGTTACTaGGCAGTGGTGGTCAGCTTAGGTTTTGTGGACAAA +
Preference number: 3 (lower is better)
Translates to: SPWSPSGRRGCY*AVVVSLGFVDK
Trigger: TTTGTCCACAAAACCTAAGCTGACCACCACTGCCCAGTAACAGCCTCTGCGCCCACTCGGGGACCAGGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp CAGCCTCCAGCTCTGGAGCACAGGGTGCTCCAATTCTaGACTGTAGCTCAGGCCAGGTACAGTCAACGTGAC +
Preference number: 3 (lower is better)
Translates to: QPPALEHRVLQF*TVAQARYSQRD
Trigger: GTCACGTTGACTGTACCTGGCCTGAGCTACAGTCCAGAATTGGAGCACCCTGTGCTCCAGAGCTGGAGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp TTCTTACCCTTGTGGGTGAAGCCATGCAGACTCTCTTaGGTGCTGCCCACCACCAGGACCTTGTGTACCCGG +
Preference number: 3 (lower is better)
Translates to: FLPLWVKPCRLS*VLPTTRTLCTR
Trigger: CCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAGGGTAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR CAA 90 bp CTAGCCTCTGTCTCCTGGGATGAAAGGCAGGAGTCACCTTCCCTGGGCCTGAGCCCTTTTCTGGTTTCTTaGGGCACCTGTATCCACCCA +
Preference number: 3 (lower is better)
Translates to: LASVSWDERQESPSLGLSPFLVS*GTCIHP
Trigger: TGGGTGGATACAGGTGCCCAAAGAAACCAGAAAAGG...GCTCAGGCCCAGGGAAGGTGACTCCTGCCTTTCATCCCAGGAGACAGAGGCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR TCA 72 bp GGCTTTATGCCACACCCCTGGTGTGCACCTTTTCCGTaGGCTCAGGCATCTTCTGGCCACTGCACAGTGAAC +
Preference number: 3 (lower is better)
Translates to: GFMPHPWCAPFP*AQASSGHCTVN
Trigger: GTTCACTGTGCAGTGGCCAGAAGATGCCTGAGCTCACGGAAAAGGTGCACACCAGGGGTGTGGCATAAAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 72 bp GGATCGCTGCTCCAGGAGGTTCATGGTCAGGATGGCTaGAGGCATCTGCACTGTCCACAGCTTCTTACCCTT +
Preference number: 3 (lower is better)
Translates to: GSLLQEVHGQDG*RHLHCPQLLTL
Trigger: AAGGGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CCA 72 bp GTACTGGAGAGGAGGTGGAAGCTTGCAAGCCTAAGCTaGGTGCCACACACCAGGCTGAACCTGATCAGACTG +
Preference number: 3 (lower is better)
Translates to: VLERRWKLASLS*VPHTRLNLIRL
Trigger: CAGTCTGATCAGGTTCAGCCTGGTGTGTGGCACCCAGCTTAGGCTTGCAAGCTTCCACCTCCTCTCCAGTAC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp CGAAAGGCTCCATTTTGTTTGTGGAGACTTGAATGCTaGCGCAGGGCTCAGGCAGCTGCCAGACCCTCACTC +
Preference number: 3 (lower is better)
Translates to: RKAPFCLWRLEC*RRAQAAARPSL
Trigger: GAGTGAGGGTCTGGCAGCTGCCTGAGCCCTGCGCCAGCATTCAAGTCTCCACAAACAAAATGGAGCCTTTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR-3UTR CAA 90 bp GAGGAGCTGCCAAGCTCTAATGGTGCCAGAGCTGACAACGGCTTAGAGTTAATCACTGAGGGACAGGGCTaGAGTGGGTTCCGAGGAGGA +
Preference number: 3 (lower is better)
Translates to: EELPSSNGARADNGLELITEGQG*SGFRGG
Trigger: TCCTCCTCGGAACCCACTCAAGCCCTGTCCCTCAGT...GATTAACTCTAAGCCGTTGTCAGCTCTGGCACCATTAGAGCTTGGCAGCTCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CAA 90 bp ATGATCAGGCCGCCACCTCTAGTAGTCATGATGAGGGTGTTGTCTTCTCGCCCGATTCGGACTTCCCCATaGGCCAGAGCAGCCATGACA +
Preference number: 3 (lower is better)
Translates to: MIRPPPLVVMMRVLSSRPIRTSP*ARAAMT
Trigger: TGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAAT...CGGGCGAGAAGACAACACCCTCATCATGACTACTAGAGGTGGCGGCCTGATCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR TCA 72 bp TCTGAAAGAGGTGAGTGGAAGGAAGGACGGACGGACTaGGGCTATGCTCGCCCTGACCACCTCACATCTCTT +
Preference number: 3 (lower is better)
Translates to: SERGEWKEGRTD*GYARPDHLTSL
Trigger: AAGAGATGTGAGGTGGTCAGGGCGAGCATAGCCTCAGTCCGTCCGTCCTTCCTTCCACTCACCTCTTTCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR TCA 72 bp CTGAATCCGAAAGGCTCCATTTTGTTTGTGGAGACTTaGATGCTGGCGCAGGGCTCAGGCAGCTGCCAGACC +
Preference number: 3 (lower is better)
Translates to: LNPKGSILFVET*MLAQGSGSCQT
Trigger: GGTCTGGCAGCTGCCTGAGCCCTGCGCCAGCATTCAAGTCTCCACAAACAAAATGGAGCCTTTCGGATTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR GCA 72 bp ACCTTCAGTCTTCGGCTTTATGCCACACCCCTGGTGTaGACCTTTTCCGTGAGCTCAGGCATCTTCTGGCCA +
Preference number: 3 (lower is better)
Translates to: TFSLRLYATPLV*TFSVSSGIFWP
Trigger: TGGCCAGAAGATGCCTGAGCTCACGGAAAAGGTGCACACCAGGGGTGTGGCATAAAGCCGAAGACTGAAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 72 bp ATCCGAAAGGCTCCATTTTGTTTGTGGAGACTTGAATaGTGGCGCAGGGCTCAGGCAGCTGCCAGACCCTCA +
Preference number: 3 (lower is better)
Translates to: IRKAPFCLWRLE*WRRAQAAARPS
Trigger: TGAGGGTCTGGCAGCTGCCTGAGCCCTGCGCCAGCATTCAAGTCTCCACAAACAAAATGGAGCCTTTCGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR GCA 72 bp TCCAGGAGGTTCATGGTCAGGATGGCTGCAGGCATCTaGACTGTCCACAGCTTCTTACCCTTGTGGGTGAAG +
Preference number: 3 (lower is better)
Translates to: SRRFMVRMAAGI*TVHSFLPLWVK
Trigger: CTTCACCCACAAGGGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR TCA 72 bp GAAGCAGACATGCAGCCCCAGAACGGGTCGAGCCGTTaGGGTATTCTGCAGGTGAAGTGTGAGCTTAAAGGT +
Preference number: 3 (lower is better)
Translates to: EADMQPQNGSSR*GILQVKCELKG
Trigger: ACCTTTAAGCTCACACTTCACCTGCAGAATACCTCAACGGCTCGACCCGTTCTGGGGCTGCATGTCTGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR GCA 72 bp TGTGCCTATAAACCAAGCTGGCAGCACCCACACCCCTaGAACTTCAAAGGACAGCAGAGGATCAGTACCAGC +
Preference number: 3 (lower is better)
Translates to: CAYKPSWQHPHP*NFKGQQRISTS
Trigger: GCTGGTACTGATCCTCTGCTGTCCTTTGAAGTTGCAGGGGTGTGGGTGCTGCCAGCTTGGTTTATAGGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 72 bp CTGGGGAAAATGTTGCTCTCCATGGAGCAGGGCTCCTaGTTCTCAAGTGATTCAGAACAGCCTCTGAGGAGG +
Preference number: 3 (lower is better)
Translates to: LGKMLLSMEQGS*FSSDSEQPLRR
Trigger: CCTCCTCAGAGGCTGTTCTGAATCACTTGAGAAGCAGGAGCCCTGCTCCATGGAGAGCAACATTTTCCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 72 bp CTTCTTGGAGCAATGCTTCCCTTTCTCCTGAGGAGCTaGCAAGCTCTAATGGTGCCAGAGCTGACAACGGCT +
Preference number: 3 (lower is better)
Translates to: LLGAMLPFLLRS*QALMVPELTTA
Trigger: AGCCGTTGTCAGCTCTGGCACCATTAGAGCTTGGCAGCTCCTCAGGAGAAAGGGAAGCATTGCTCCAAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp CAGTTAGACCTCCAGCGTGGTCCAGCTGTGCCTCACTaGATGATGCACAAAGAACCCTTTGCTCTCCTTGCT +
Preference number: 3 (lower is better)
Translates to: QLDLQRGPAVPH*MMHKEPFALLA
Trigger: AGCAAGGAGAGCAAAGGGTTCTTTGTGCATCATCCAGTGAGGCACAGCTGGACCACGCTGGAGGTCTAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp CTCTCAGTAGCGACCATCTGTCAGACAGAGCTTAACTaGAGCCCCAGAGAGAGAATAACAGCCAGCCCTGAG +
Preference number: 3 (lower is better)
Translates to: LSVATICQTELN*SPRERITASPE
Trigger: CTCAGGGCTGGCTGTTATTCTCTCTCTGGGGCTCCAGTTAAGCTCTGTCTGACAGATGGTCGCTACTGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp GCCCCACTGGCTGGGCACTCAACTCGATGCAGTACTTaGGGTGTTTGGAGTCTCTTCTCAGGATATAGATGC +
Preference number: 3 (lower is better)
Translates to: APLAGHSTRCST*GVWSLFSGYRC
Trigger: GCATCTATATCCTGAGAAGAGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR GCA 72 bp AGCTGTGCCTCACTGGATGATGCACAAAGAACCCTTTaGTCTCCTTGCTCAGGTAGTACTGTCTTGAGGGGG +
Preference number: 3 (lower is better)
Translates to: SCASLDDAQRTL*SPCSGSTVLRG
Trigger: CCCCCTCAAGACAGTACTACCTGAGCAAGGAGAGCAAAGGGTTCTTTGTGCATCATCCAGTGAGGCACAGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 72 bp TGCAACAGGGATCAACAGGTAATGTCTAAGGACTCTTaGCAAGGACCCAGCACCCATACTGGGCAGCTCACA +
Preference number: 3 (lower is better)
Translates to: CNRDQQVMSKDS*QGPSTHTGQLT
Trigger: TGTGAGCTGCCCAGTATGGGTGCTGGGTCCTTGGCAAGAGTCCTTAGACATTACCTGTTGATCCCTGTTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp GTAACTCCAGCTCCTGGGGAATCCAAGGCCCTTTTCTaGTTTCTTTGGGCACCTGTATCCACCCACACACAT +
Preference number: 3 (lower is better)
Translates to: VTPAPGESKALF*FLWAPVSTHTH
Trigger: ATGTGTGTGGGTGGATACAGGTGCCCAAAGAAACCAGAAAAGGGCCTTGGATTCCCCAGGAGCTGGAGTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp GCCCTTGCTACTGAGACTCTCCACAAAGGTTTCCAGTaGGTAACTGAGTCCTGGTACCAGCAAGGGAACCTT +
Preference number: 3 (lower is better)
Translates to: ALATETLHKGFQ*VTESWYQQGNL
Trigger: AAGGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR CAA 90 bp GGCAGCTCACAACCACCTGTAACTCCAGCTCCTGGGGAATCCAAGGCCCTTTTCAAGGCTCCATTTTGTTaGTGGAGACTTGAATGCTGG +
Preference number: 3 (lower is better)
Translates to: GSSQPPVTPAPGESKALFKAPFC*WRLECW
Trigger: CCAGCATTCAAGTCTCCACAAACAAAATGGAGCCTT...GAAAAGGGCCTTGGATTCCCCAGGAGCTGGAGTTACAGGTGGTTGTGAGCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CAA 90 bp GTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGACTGTGTCAGAAAGGCTCCATTTTGTTaGTGGAGACTTGAATGCTGG +
Preference number: 3 (lower is better)
Translates to: VSCCSGHWQRWGARDCVRKAPFC*WRLECW
Trigger: CCAGCATTCAAGTCTCCACAAACAAAATGGAGCCTT...TCTGACACAGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
3UTR-3UTR CAA 90 bp CTAGGGGAGTCTGCACAGAAGCAAGTTAGAAAGGAAGTGTCCCGCCCGAGAAATTTGAGTCTCGCCTTCTaGGAGCAATGCTTCCCTTTC +
Preference number: 3 (lower is better)
Translates to: LGESAQKQVRKEVSRPRNLSLAF*EQCFPF
Trigger: GAAAGGGAAGCATTGCTCCAAGAAGGCGAGACTCAA...ATTTCTCGGGCGGGACACTTCCTTTCTAACTTGCTTCTGTGCAGACTCCCCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CAA 90 bp ATCATGTCTGAGATGCCCTTGCTACTGAGACTCTCCACAAAGGTTTCCAGTGGGCACAGCTTCTTACCCTaGTGGGTGAAGCCATGCAGA +
Preference number: 3 (lower is better)
Translates to: IMSEMPLLLRLSTKVSSGHSFLP*WVKPCR
Trigger: TCTGCATGGCTTCACCCACAAGGGTAAGAAGCTGTG...CCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR GCA 72 bp AGATCTAAGCACATCTACCTTCAGTCTTCGGCTTTATaGCACACCCCTGGTGTGCACCTTTTCCGTGAGCTC +
Preference number: 3 (lower is better)
Translates to: RSKHIYLQSSAL*HTPGVHLFREL
Trigger: GAGCTCACGGAAAAGGTGCACACCAGGGGTGTGGCATAAAGCCGAAGACTGAAGGTAGATGTGCTTAGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 72 bp GGGGAGGGGTCTCAAGAGCACCAAACGCTTATCTGCTaGAACAGGGATCAACAGGTAATGTCTAAGGACTCT +
Preference number: 3 (lower is better)
Translates to: GEGSQEHQTLIC*NRDQQVMSKDS
Trigger: AGAGTCCTTAGACATTACCTGTTGATCCCTGTTGCAGCAGATAAGCGTTTGGTGCTCTTGAGACCCCTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 72 bp GGCCTCCAGCAGAAAGTATGGCTGAGATTAAAGGTGTaGACCACCACGCCTGGACCTAATTTGTTCTGTTCC +
Preference number: 3 (lower is better)
Translates to: GLQQKVWLRLKV*TTTPGPNLFCS
Trigger: GGAACAGAACAAATTAGGTCCAGGCGTGGTGGTGCACACCTTTAATCTCAGCCATACTTTCTGCTGGAGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 72 bp ACTTGGGGTGTTTGGAGTCTCTTCTCAGGATATAGATaGTCCCATTTCGGCAGGCAGCAGTCAACCGGAACT +
Preference number: 3 (lower is better)
Translates to: TWGVWSLFSGYR*SHFGRQQSTGT
Trigger: AGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAGAGACTCCAAACACCCCAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CCA 72 bp GTTCTGATTTCACAGCATGACTTGGGTGAAAGGGACTaGGATGTCATGATCCAACCTGGCCCCATGAGAGCA +
Preference number: 3 (lower is better)
Translates to: VLISQHDLGERD*DVMIQPGPMRA
Trigger: TGCTCTCATGGGGCCAGGTTGGATCATGACATCCCAGTCCCTTTCACCCAAGTCATGCTGTGAAATCAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CAA 90 bp TGGGCACTCAACTCGATGCAGTACTTGGGGTGTTTGGAGTCTCTTCTCAGGATATGGCGCTTGATAACCTaGGACTTGTGCTGGTTCACA +
Preference number: 3 (lower is better)
Translates to: WALNSMQYLGCLESLLRIWRLIT*DLCWFT
Trigger: TGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCA...TATCCTGAGAAGAGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR GCA 72 bp TCACTGGATGATGCACAAAGAACCCTTTGCTCTCCTTaGTCAGGTAGTACTGTCTTGAGGGGGATGGGCAAT +
Preference number: 3 (lower is better)
Translates to: SLDDAQRTLCSP*SGSTVLRGMGN
Trigger: ATTGCCCATCCCCCTCAAGACAGTACTACCTGAGCAAGGAGAGCAAAGGGTTCTTTGTGCATCATCCAGTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp TTGAGAAAGCTTAGCACATGTGCCTATAAACCAAGCTaGCAGCACCCACACCCCTGCAACTTCAAAGGACAG +
Preference number: 3 (lower is better)
Translates to: LRKLSTCAYKPS*QHPHPCNFKGQ
Trigger: CTGTCCTTTGAAGTTGCAGGGGTGTGGGTGCTGCCAGCTTGGTTTATAGGCACATGTGCTAAGCTTTCTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp GTTTTACCCAATGAGGGCGGAAGAAGAAAGAAGACATaGGACCCAGGAATCAGGGGATCTAACAGGAGAAGG +
Preference number: 3 (lower is better)
Translates to: VLPNEGGRRKKT*DPGIRGSNRRR
Trigger: CCTTCTCCTGTTAGATCCCCTGATTCCTGGGTCCCATGTCTTCTTTCTTCTTCCGCCCTCATTGGGTAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp TTCTTCTTCAGGGTGGTCATGGTGGTGATGACTGTCTaGCGCTTGATAACCTTGGACTTGTGCTGGTTCACA +
Preference number: 3 (lower is better)
Translates to: FFFRVVMVVMTV*RLITLDLCWFT
Trigger: TGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAGACAGTCATCACCACCATGACCACCCTGAAGAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CCA 72 bp GCTGGGCACTCAACTCGATGCAGTACTTGGGGTGTTTaGAGTCTCTTCTCAGGATATAGATGCTCCCATTTC +
Preference number: 3 (lower is better)
Translates to: AGHSTRCSTWGV*SLFSGYRCSHF
Trigger: GAAATGGGAGCATCTATATCCTGAGAAGAGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR CCA 72 bp ACTCTCCACAAAGGTTTCCAGTGGGTAACTGAGTCCTaGTACCAGCAAGGGAACCTTAAAGAAAGCCTGAGG +
Preference number: 3 (lower is better)
Translates to: TLHKGFQWVTES*YQQGNLKESLR
Trigger: CCTCAGGCTTTCTTTAAGGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR TCA 72 bp TTTAGAGTGATCTTACCCTGGGTACGTTTTACCCAATaGGGGCGGAAGAAGAAAGAAGACATGGGACCCAGG +
Preference number: 3 (lower is better)
Translates to: FRVILPWVRFTQ*GRKKKEDMGPR
Trigger: CCTGGGTCCCATGTCTTCTTTCTTCTTCCGCCCTCATTGGGTAAAACGTACCCAGGGTAAGATCACTCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR TCA 72 bp TGGGAAGTCCAAGAGTCTAGTAGTTGCTCAGTCCCATaGGGCTGGGTGTTTCAGCTGGTCTTTTGTATAAGC +
Preference number: 3 (lower is better)
Translates to: WEVQESSSCSVP*GWVFQLVFCIS
Trigger: GCTTATACAAAAGACCAGCTGAAACACCCAGCCTCATGGGACTGAGCAACTACTAGACTCTTGGACTTCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR-3UTR CAA 90 bp CCTACCTTGATCATGTCTGAGATGCCCTTGCTACTGAGACTCTCCACAAAGGTTCAGTACTTGGGGTGTTaGGAGTCTCTTCTCAGGATA +
Preference number: 3 (lower is better)
Translates to: PTLIMSEMPLLLRLSTKVQYLGC*ESLLRI
Trigger: TATCCTGAGAAGAGACTCCAAACACCCCAAGTACTG...AACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGGTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR CAA 90 bp CCTACCTTGATCATGTCTGAGATGCCCTTGCTACTGAGACTCTCCACAAAGGTTAACTCGATGCAGTACTaGGGGTGTTTGGAGTCTCTT +
Preference number: 3 (lower is better)
Translates to: PTLIMSEMPLLLRLSTKVNSMQY*GCLESL
Trigger: AAGAGACTCCAAACACCCCAAGTACTGCATCGAGTT...AACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGGTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
3UTR-3UTR CAA 90 bp TTACTAGGCAAGCATAGTATGACACTGTGTTTTATGGTAGGACCTGGTCATATGAGACTGGGGAAAATGTaGCTCTCCATGGAGCAGGGC +
Preference number: 3 (lower is better)
Translates to: LLGKHSMTLCFMVGPGHMRLGKM*LSMEQG
Trigger: GCCCTGCTCCATGGAGAGCAACATTTTCCCCAGTCT...CATATGACCAGGTCCTACCATAAAACACAGTGTCATACTATGCTTGCCTAGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR TCA 72 bp CGAATCAATATAAACAGCAATGTAAACAGTGGGCACTaGCTACCTAAAGCATGGAGAGCAGGGGAGGGGTCT +
Preference number: 3 (lower is better)
Translates to: RININSNVNSGH*LPKAWRAGEGS
Trigger: AGACCCCTCCCCTGCTCTCCATGCTTTAGGTAGTCAGTGCCCACTGTTTACATTGCTGTTTATATTGATTCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp TGGAATGACTCAGGCTGCAATCCAACTAACCAACAATaGGCAGCTGTGAATGGGAAGTCCAAGAGTCTAGTA +
Preference number: 3 (lower is better)
Translates to: WNDSGCNPTNQQ*AAVNGKSKSLV
Trigger: TACTAGACTCTTGGACTTCCCATTCACAGCTGCCCATTGTTGGTTAGTTGGATTGCAGCCTGAGTCATTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CCA 72 bp AGCAGCAAGCCTTCCTTCTTCCATTGTCCTTATTTATaGAGGCCTCCAGCAGAAAGTATGGCTGAGATTAAA +
Preference number: 3 (lower is better)
Translates to: SSKPSFFHCPYL*RPPAESMAEIK
Trigger: TTTAATCTCAGCCATACTTTCTGCTGGAGGCCTCCATAAATAAGGACAATGGAAGAAGGAAGGCTTGCTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR TCA 72 bp AGCTATGAAGAGTGCACACATCAAATATTTTTGTTCTaGTTTCACAGCATGACTTGGGTGAAAGGGACTGGG +
Preference number: 3 (lower is better)
Translates to: SYEECTHQIFLF*FHSMTWVKGTG
Trigger: CCCAGTCCCTTTCACCCAAGTCATGCTGTGAAATCAGAACAAAAATATTTGATGTGTGCACTCTTCATAGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR TCA 72 bp AGGACCTGGTCATATGTCTCACCCCTTGTATCATCATaGGTAGCTATGAAGAGTGCACACATCAAATATTTT +
Preference number: 3 (lower is better)
Translates to: RTWSYVSPLVSS*VAMKSAHIKYF
Trigger: AAAATATTTGATGTGTGCACTCTTCATAGCTACTCATGATGATACAAGGGGTGAGACATATGACCAGGTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR GCA 72 bp CTATATATTATGGGAATTTATTGGAATGACTCAGGCTaGAATCCAACTAACCAACAATGGGCAGCTGTGAAT +
Preference number: 3 (lower is better)
Translates to: LYIMGIYWNDSG*NPTNQQWAAVN
Trigger: ATTCACAGCTGCCCATTGTTGGTTAGTTGGATTGCAGCCTGAGTCATTCCAATAAATTCCCATAATATATAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp TGTGGAGACTTGAATGCTGGCGCAGGGCTCAGGCAGCTGCCAGACCCTCACTCAGGTGGCAGCCGAGGCTaGCAGGGCAGGCAGTGGGCT +
Preference number: 4 (lower is better)
Translates to: CGDLNAGAGLRQLPDPHSGGSRG*QGRQWA
Trigger: AGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACC...TGAGTGAGGGTCTGGCAGCTGCCTGAGCCCTGCGCCAGCATTCAAGTCTCCACA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp AGCACCCCGTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGACTACCTTCAGGCGGGGCTaGTGCCCACCTGGGCCAAGG +
Preference number: 4 (lower is better)
Translates to: STPCLVAQVTGRGGEQGTTFRRG*CPPGPR
Trigger: CCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGT...AGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR TCA 90 bp GTGACAGGCTCCCGGCTTACCTGCCAAAGGAATGGCAAGGCTGGGGGTCTCTGCCTCGCGAGCTGTGGTTaGCATGGGGCTCAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: VTGSRLTCQRNGKAGGLCLASCG*HGAQAG
Trigger: TCCAGCCTGAGCCCCATGTCAACCACAGCTCGCGAG...GCAGAGACCCCCAGCCTTGCCATTCCTTTGGCAGGTAAGCCGGGAGCCTGTCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp CTCACAGGCATGTTGATGTGGGCACTCAGCAGGGGAGCACTCTGGCCTTCCCGATTCAGGCGGGGCTGCTaGCCACCTGGGCCAAGGTCT +
Preference number: 4 (lower is better)
Translates to: LTGMLMWALSRGALWPSRFRRGC*PPGPRS
Trigger: AGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAA...TCGGGAAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACATGCCTGTGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp CTAGCACCTAGGGAGGGAAAGACAAGGCAGAGGGGGCAACTTGACCTCCCCTCTACCTTCAGGCGGGGCTaGTGCCCACCTGGGCCAAGG +
Preference number: 4 (lower is better)
Translates to: LAPREGKTRQRGQLDLPSTFRRG*CPPGPR
Trigger: CCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGT...AGAGGGGAGGTCAAGTTGCCCCCTCTGCCTTGTCTTTCCCTCCCTAGGTGCTAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp AGGAATGGCAAGGCTGGGGGTCTCTGCTGTGCTAACACCCTATCACAGCCCTGGACCTTCAGGCGGGGCTaGTGCCCACCTGGGCCAAGG +
Preference number: 4 (lower is better)
Translates to: RNGKAGGLCCANTLSQPWTFRRG*CPPGPR
Trigger: CCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGT...CCAGGGCTGTGATAGGGTGTTAGCACAGCAGAGACCCCCAGCCTTGCCATTCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp GGCAGCTCACAACCACCTGTAACTCCAGCTCCTGGGGAATCCAAGGCCCTTTTCGGTGGCAGCCGAGGCTaGCAGGGCAGGCAGTGGGCT +
Preference number: 4 (lower is better)
Translates to: GSSQPPVTPAPGESKALFGGSRG*QGRQWA
Trigger: AGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACC...GAAAAGGGCCTTGGATTCCCCAGGAGCTGGAGTTACAGGTGGTTGTGAGCTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp AGGCTGGGGGTCTCTGCTGTGCTAACACCCTATCACAGCCCTGGGTCCCATAGTGGGGCTCGCGAGCTGTaGTTGACATGGGGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: RLGVSAVLTPYHSPGSHSGAREL*LTWGSG
Trigger: GCCTGAGCCCCATGTCAACCACAGCTCGCGAGCCCC...ACTATGGGACCCAGGGCTGTGATAGGGTGTTAGCACAGCAGAGACCCCCAGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS-3UTR TCA 90 bp GTGTTGTCTTCTCGCCCGTATCGGCCAAAGCACAGGCTGGTTACTGCATCCGGGGCACTGTGGGTCCTTTaGGCACCTTCAGGCGGGGCT +
Preference number: 4 (lower is better)
Translates to: VLSSRPYRPKHRLVTASGALWVL*APSGGA
Trigger: AGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGC...CCCGGATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR TCA 90 bp TCTTGGGTGCTGCCCACCACCAGGACCTTGTGTACCCGGACCAGCCCCACTGGCCTGCAGAAACCTGAGTaGCTGCACAGACAAAGGCAC +
Preference number: 4 (lower is better)
Translates to: SWVLPTTRTLCTRTSPTGLQKPE*LHRQRH
Trigger: GTGCCTTTGTCTGTGCAGTCACTCAGGTTTCTGCAG...GCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR TCA 90 bp CTAGCACCTAGGGAGGGAAAGACAAGGCAGAGGGGGCAACTTGACCTCCCCTCTGTGGGGCCCAGGCCTTaGACCACAGCATGCAGCTTG +
Preference number: 4 (lower is better)
Translates to: LAPREGKTRQRGQLDLPSVGPRP*TTACSL
Trigger: CAAGCTGCATGCTGTGGTTCAAGGCCTGGGCCCCAC...AGAGGGGAGGTCAAGTTGCCCCCTCTGCCTTGTCTTTCCCTCCCTAGGTGCTAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp TCTTGGGTGCTGCCCACCACCAGGACCTTGTGTACCCGGACCAGCCCCACTGGCTACTCCCCATCGCCATaGAAATCTGCCAGTGACAGG +
Preference number: 4 (lower is better)
Translates to: SWVLPTTRTLCTRTSPTGYSPSP*KSASDR
Trigger: CCTGTCACTGGCAGATTTGCATGGCGATGGGGAGTA...GCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR GCA 90 bp CTAGCCTCTGTCTCCTGGGATGAAAGGCAGGAGTCACCTTCCCTGGGCCTGAGCGTCTGGAAGGTCCGGTaGATGGCTGTGCCAGCTTCC +
Preference number: 4 (lower is better)
Translates to: LASVSWDERQESPSLGLSVWKVR*MAVPAS
Trigger: GGAAGCTGGCACAGCCATGCACCGGACCTTCCAGAC...GCTCAGGCCCAGGGAAGGTGACTCCTGCCTTTCATCCCAGGAGACAGAGGCTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp AGCCGGGTCTTTCGGGGCACACTGAGTTTTGTGGTCTGTGCTAGCGGTGGGCCCCAGGAGGAGAAGGTGTaGATGTTGGCCATGGGGTCG +
Preference number: 4 (lower is better)
Translates to: SRVFRGTLSFVVCASGGPQEEKV*MLAMGS
Trigger: CGACCCCATGGCCAACATCCACACCTTCTCCTCCTG...GGGCCCACCGCTAGCACAGACCACAAAACTCAGTGTGCCCCGAAAGACCCGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR CCA 90 bp AGGCATCTGCACTGTCCACAGCTTCTTACCCTTGTGGGTGAAGCCATGCAGACTGGTGGCAGCCGAGGCTaGCAGGGCAGGCAGTGGGCT +
Preference number: 4 (lower is better)
Translates to: RHLHCPQLLTLVGEAMQTGGSRG*QGRQWA
Trigger: AGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACC...AGTCTGCATGGCTTCACCCACAAGGGTAAGAAGCTGTGGACAGTGCAGATGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR CCA 90 bp CTGTGCTCCAAGGTCCAGATCAAAGCCCGTGCCTTCCAGCCTCCAGCTCTGGAGCCATGCAGACTCTCTTaGGTGCTGCCCACCACCAGG +
Preference number: 4 (lower is better)
Translates to: LCSKVQIKARAFQPPALEPCRLS*VLPTTR
Trigger: CCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGG...CTCCAGAGCTGGAGGCTGGAAGGCACGGGCTTTGATCTGGACCTTGGAGCACAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp GGCAGCTCACAACCACCTGTAACTCCAGCTCCTGGGGAATCCAAGGCCCTTTTCGGGGCTCGCGAGCTGTaGTTGACATGGGGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: GSSQPPVTPAPGESKALFGAREL*LTWGSG
Trigger: GCCTGAGCCCCATGTCAACCACAGCTCGCGAGCCCC...GAAAAGGGCCTTGGATTCCCCAGGAGCTGGAGTTACAGGTGGTTGTGAGCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CAA 72 bp ACCCACTGTCTCTTAGCCTGGGCCCTGAAGTACCCTTaGAAAGGGTCACCCTGGTCCCCGAGTGGGCGCAGA +
Preference number: 4 (lower is better)
Translates to: THCLLAWALKYP*KGSPWSPSGRR
Trigger: TCTGCGCCCACTCGGGGACCAGGGTGACCCTTTCAAAGGGTACTTCAGGGCCCAGGCTAAGAGACAGTGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CAA 72 bp TCGGACTTCCCCATTGGCCAGAGCAGCCATGACAGCTaGCAGGCCTCGGGATCGCTGCTCCAGGAGGTTCAT +
Preference number: 4 (lower is better)
Translates to: SDFPIGQSSHDS*QASGSLLQEVH
Trigger: ATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR TCA 90 bp GGCAGCTCACAACCACCTGTAACTCCAGCTCCTGGGGAATCCAAGGCCCTTTTCCTCGCGAGCTGTGGTTaGCATGGGGCTCAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: GSSQPPVTPAPGESKALFLASCG*HGAQAG
Trigger: TCCAGCCTGAGCCCCATGTCAACCACAGCTCGCGAG...GAAAAGGGCCTTGGATTCCCCAGGAGCTGGAGTTACAGGTGGTTGTGAGCTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR TCA 90 bp GAGGTGGGGAGCAAGGGACTGTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTGTGGGGCCCAGGCCTTaGACCACAGCATGCAGCTTG +
Preference number: 4 (lower is better)
Translates to: EVGSKGLCQRRTGSCCLTVGPRP*TTACSL
Trigger: CAAGCTGCATGCTGTGGTTCAAGGCCTGGGCCCCAC...AGTGAGACAGCAGCTCCCTGTTCTTCTCTGACACAGTCCCTTGCTCCCCACCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR TCA 90 bp CTGTGCTCCAAGGTCCAGATCAAAGCCCGTGCCTTCCAGCCTCCAGCTCTGGAGCACTCACAGGCATGTTaGTGTGGGCACTCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: LCSKVQIKARAFQPPALEHSQAC*CGHSAG
Trigger: CCCTGCTGAGTGCCCACATCAACATGCCTGTGAGTG...CTCCAGAGCTGGAGGCTGGAAGGCACGGGCTTTGATCTGGACCTTGGAGCACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp TCCGAGCACCCCGTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGTGTGGATGTTGGCCATaGGGTCGTAGTGTGCGTCCA +
Preference number: 4 (lower is better)
Translates to: SEHPVSCCSGHWQRWGARCGCWP*GRSVRP
Trigger: TGGACGCACACTACGACCCCATGGCCAACATCCACA...CCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCTCGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp TCCGAGCACCCCGTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGGTTCATGGTCAGGATaGCTGCAGGCATCTGCACTG +
Preference number: 4 (lower is better)
Translates to: SEHPVSCCSGHWQRWGARGSWSG*LQASAL
Trigger: CAGTGCAGATGCCTGCAGCCATCCTGACCATGAACC...CCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCTCGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp CTAGCACCTAGGGAGGGAAAGACAAGGCAGAGGGGGCAACTTGACCTCCCCTCTACATGGGGCTCAGGCTaGACTCCAGGGCCTGGACAT +
Preference number: 4 (lower is better)
Translates to: LAPREGKTRQRGQLDLPSTWGSG*TPGPGH
Trigger: ATGTCCAGGCCCTGGAGTCCAGCCTGAGCCCCATGT...AGAGGGGAGGTCAAGTTGCCCCCTCTGCCTTGTCTTTCCCTCCCTAGGTGCTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp AGCACCCCGTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGACTGAGCTGTGGTTGACATaGGGCTCAGGCTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: STPCLVAQVTGRGGEQGTELWLT*GSGWTP
Trigger: TGGAGTCCAGCCTGAGCCCCATGTCAACCACAGCTC...AGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp TGTGGAGACTTGAATGCTGGCGCAGGGCTCAGGCAGCTGCCAGACCCTCACTCAGAGCTGTGGTTGACATaGGGCTCAGGCTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: CGDLNAGAGLRQLPDPHSELWLT*GSGWTP
Trigger: TGGAGTCCAGCCTGAGCCCCATGTCAACCACAGCTC...TGAGTGAGGGTCTGGCAGCTGCCTGAGCCCTGCGCCAGCATTCAAGTCTCCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR CAA 72 bp ATGGTGAAGGCCTCAGGGTCCAGCACTAGGAGTTCCTaGCTCTCAGTGCCTAGCACCAGACAGGACGCTGCG +
Preference number: 4 (lower is better)
Translates to: MVKASGSSTRSS*LSVPSTRQDAA
Trigger: CGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR TCA 90 bp GAGCTTAACTGGAGCCCCAGAGAGAGAATAACAGCCAGCCCTGAGGAGGAATGCGCACTGTGGGTCCTTTaGGCACCTTCAGGCGGGGCT +
Preference number: 4 (lower is better)
Translates to: ELNWSPRERITASPEEECALWVL*APSGGA
Trigger: AGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGC...GCATTCCTCCTCAGGGCTGGCTGTTATTCTCTCTCTGGGGCTCCAGTTAAGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR TCA 90 bp TCCGAGCACCCCGTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGCTGCAGAAACCTGAGTaGCTGCACAGACAAAGGCAC +
Preference number: 4 (lower is better)
Translates to: SEHPVSCCSGHWQRWGARLQKPE*LHRQRH
Trigger: GTGCCTTTGTCTGTGCAGTCACTCAGGTTTCTGCAG...CCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCTCGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR TCA 90 bp CAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGTAGTCCCACAGCATGCAGCTTaGGGGGCTCGCGAGCTGTGG +
Preference number: 4 (lower is better)
Translates to: QRRTGSCCLTTLLPGEVVPQHAA*GARELW
Trigger: CCACAGCTCGCGAGCCCCTCAAGCTGCATGCTGTGG...GACTACTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp CTCACCCGTCCCTTCCACAAACACTGCTGTGCGCTTCAGGATCTTGATGATCAGTTCAGGCGGGGCTGCTaGCCACCTGGGCCAAGGTCT +
Preference number: 4 (lower is better)
Translates to: LTRPFHKHCCALQDLDDQFRRGC*PPGPRS
Trigger: AGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAA...CTGATCATCAAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGGACGGGTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR GCA 90 bp GAGGGAAAGACAAGGCAGAGGGGGCAACTTGACCTCCCCTCTTCACTAGCAGCAGTCTGGAAGGTCCGGTaGATGGCTGTGCCAGCTTCC +
Preference number: 4 (lower is better)
Translates to: EGKTRQRGQLDLPSSLAAVWKVR*MAVPAS
Trigger: GGAAGCTGGCACAGCCATGCACCGGACCTTCCAGAC...TGCTGCTAGTGAAGAGGGGAGGTCAAGTTGCCCCCTCTGCCTTGTCTTTCCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp GCAGAGGTGGGGAGCAAGGGACTGTGTCAGAGAAGAACAGGGAGCTGCTGTCTCGTCCTGGGCTCGTGTTaGTCCATGAGGAAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: AEVGSKGLCQRRTGSCCLVLGSC*SMRKVA
Trigger: TGCCACCTTCCTCATGGACCAACACGAGCCCAGGAC...GAGACAGCAGCTCCCTGTTCTTCTCTGACACAGTCCCTTGCTCCCCACCTCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR TCA 90 bp CTAGCACCTAGGGAGGGAAAGACAAGGCAGAGGGGGCAACTTGACCTCCCCTCTCGTCTGCCTTTTCCCTaGTGTCCTCCAGCATCTCCT +
Preference number: 4 (lower is better)
Translates to: LAPREGKTRQRGQLDLPSRLPFP*CPPASP
Trigger: AGGAGATGCTGGAGGACATCAGGGAAAAGGCAGACG...AGAGGGGAGGTCAAGTTGCCCCCTCTGCCTTGTCTTTCCCTCCCTAGGTGCTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp AGCACCCCGTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGACTGCACTAGGAGTTCCTTaGTCTCAGTGCCTAGCACCA +
Preference number: 4 (lower is better)
Translates to: STPCLVAQVTGRGGEQGTALGVP*SQCLAP
Trigger: TGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGC...AGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp GAGGTGGGGAGCAAGGGACTGTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTCAGGAGGAGAAGGTGTaGATGTTGGCCATGGGGTCG +
Preference number: 4 (lower is better)
Translates to: EVGSKGLCQRRTGSCCLTQEEKV*MLAMGS
Trigger: CGACCCCATGGCCAACATCCACACCTTCTCCTCCTG...AGTGAGACAGCAGCTCCCTGTTCTTCTCTGACACAGTCCCTTGCTCCCCACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp GGAATGGCAAGGCTGGGGGTCTCTGCTGTGCTAACACCCTATCACAGCCCTGGGGGGTTTGGAGGTAACTaGGGCAGGCTGAACTTGAAG +
Preference number: 4 (lower is better)
Translates to: GMARLGVSAVLTPYHSPGGFGGN*GRLNLK
Trigger: CTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCC...CCCAGGGCTGTGATAGGGTGTTAGCACAGCAGAGACCCCCAGCCTTGCCATTCC
58% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR TCA 90 bp GCACCTAGGGAGGGAAAGACAAGGCAGAGGGGGCAACTTGACCTCCCCTCTTCAATGCAAATCTGCCAGTaGCAGGCAGGAGGAGAAGGT +
Preference number: 4 (lower is better)
Translates to: APREGKTRQRGQLDLPSSMQICQ*QAGGEG
Trigger: ACCTTCTCCTCCTGCCTGTCACTGGCAGATTTGCAT...TGAAGAGGGGAGGTCAAGTTGCCCCCTCTGCCTTGTCTTTCCCTCCCTAGGTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR TCA 90 bp CTGTGCTCCAAGGTCCAGATCAAAGCCCGTGCCTTCCAGCCTCCAGCTCTGGAGCACCTTGATCATGTCTaGGATGCCCTTGCTACTGAG +
Preference number: 4 (lower is better)
Translates to: LCSKVQIKARAFQPPALEHLDHV*DALATE
Trigger: CTCAGTAGCAAGGGCATCTCAGACATGATCAAGGTG...CTCCAGAGCTGGAGGCTGGAAGGCACGGGCTTTGATCTGGACCTTGGAGCACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR TCA 90 bp TGTGGAGACTTGAATGCTGGCGCAGGGCTCAGGCAGCTGCCAGACCCTCACTCAAGTAGCCACCTACCTTaGTCATGTCTGAGATGCCCT +
Preference number: 4 (lower is better)
Translates to: CGDLNAGAGLRQLPDPHSSSHLP*SCLRCP
Trigger: AGGGCATCTCAGACATGATCAAGGTAGGTGGCTACT...TGAGTGAGGGTCTGGCAGCTGCCTGAGCCCTGCGCCAGCATTCAAGTCTCCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp GTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGACTGTGTCAGAGATACAGGAAGCAGACATaGAGCCCCAGAACGGGTCGA +
Preference number: 4 (lower is better)
Translates to: VLLLRSLAEVGSKGLCQRYRKQT*SPRTGR
Trigger: TCGACCCGTTCTGGGGCTGCATGTCTGCTTCCTGTA...TCTCTGACACAGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp GTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGACTGTGTCAGAGATGTGGATGTTGGCCATaGGGTCGTAGTGTGCGTCCA +
Preference number: 4 (lower is better)
Translates to: VLLLRSLAEVGSKGLCQRCGCWP*GRSVRP
Trigger: TGGACGCACACTACGACCCCATGGCCAACATCCACA...TCTCTGACACAGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp GTGACAGGCTCCCGGCTTACCTGCCAAAGGAATGGCAAGGCTGGGGGTCTCTGCACCTTGGACTTGTGCTaGTTCACAAACGCCTCCATT +
Preference number: 4 (lower is better)
Translates to: VTGSRLTCQRNGKAGGLCTLDLC*FTNASI
Trigger: AATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGT...GCAGAGACCCCCAGCCTTGCCATTCCTTTGGCAGGTAAGCCGGGAGCCTGTCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp CTGTGCTCCAAGGTCCAGATCAAAGCCCGTGCCTTCCAGCCTCCAGCTCTGGAGAGCTTCTTACCCTTGTaGGTGAAGCCATGCAGACTC +
Preference number: 4 (lower is better)
Translates to: LCSKVQIKARAFQPPALESFLPL*VKPCRL
Trigger: GAGTCTGCATGGCTTCACCCACAAGGGTAAGAAGCT...CTCCAGAGCTGGAGGCTGGAAGGCACGGGCTTTGATCTGGACCTTGGAGCACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp GTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGACTGTGTCAGAACAGGCATGTTGATGTaGGCACTCAGCAGGGGAGCA +
Preference number: 4 (lower is better)
Translates to: VSCCSGHWQRWGARDCVRTGMLM*ALSRGA
Trigger: TGCTCCCCTGCTGAGTGCCCACATCAACATGCCTGT...TCTGACACAGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp GTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGACTGTGTCAGAGGCCAAAGCACAGGCTaGTTACTGCATCCTTGGCCA +
Preference number: 4 (lower is better)
Translates to: VSCCSGHWQRWGARDCVRGQSTG*LLHPWP
Trigger: TGGCCAAGGATGCAGTAACCAGCCTGTGCTTTGGCC...TCTGACACAGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR CAA 72 bp ATCAGGCCGCCACCTCTAGTAGTCATGATGAGGGTGTaGTCTTCTCGCCCGTATCGGCCAAAGCACAGGCTG +
Preference number: 4 (lower is better)
Translates to: IRPPPLVVMMRV*SSRPYRPKHRL
Trigger: CAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAGGTGGCGGCCTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR TCA 90 bp GGATGTTTCTTTGGTCCAGACCCACTGTCTCTTAGCCTGGGCCCTGAAGTACCCCGTCTGCCTTTTCCCTaGTGTCCTCCAGCATCTCCT +
Preference number: 4 (lower is better)
Translates to: GCFFGPDPLSLSLGPEVPRLPFP*CPPASP
Trigger: AGGAGATGCTGGAGGACATCAGGGAAAAGGCAGACG...GGGTACTTCAGGGCCCAGGCTAAGAGACAGTGGGTCTGGACCAAAGAAACATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR TCA 90 bp AGCACCCCGTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGACTGAGGTATTCTGCAGGTaGAGTGTGAGCTTAAAGGTG +
Preference number: 4 (lower is better)
Translates to: STPCLVAQVTGRGGEQGTEVFCR*SVSLKV
Trigger: CACCTTTAAGCTCACACTTCACCTGCAGAATACCTC...AGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR TCA 90 bp CTCACAGGCATGTTGATGTGGGCACTCAGCAGGGGAGCACTCTGGCCTTCCCGATACCTTGATCATGTCTaGGATGCCCTTGCTACTGAG +
Preference number: 4 (lower is better)
Translates to: LTGMLMWALSRGALWPSRYLDHV*DALATE
Trigger: CTCAGTAGCAAGGGCATCTCAGACATGATCAAGGTA...TCGGGAAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACATGCCTGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp AGTGACAGGCTCCCGGCTTACCTGCCAAAGGAATGGCAAGGCTGGGGGTCTCTGCATGGGGTCGTAGTGTaGGTCCAGCCATTTAGAATT +
Preference number: 4 (lower is better)
Translates to: SDRLPAYLPKEWQGWGSLHGVVV*VQPFRI
Trigger: AATTCTAAATGGCTGGACGCACACTACGACCCCATG...CAGAGACCCCCAGCCTTGCCATTCCTTTGGCAGGTAAGCCGGGAGCCTGTCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp GGAATGGCAAGGCTGGGGGTCTCTGCTGTGCTAACACCCTATCACAGCCCTGGGCATGGGGTCGTAGTGTaGGTCCAGCCATTTAGAATT +
Preference number: 4 (lower is better)
Translates to: GMARLGVSAVLTPYHSPGHGVVV*VQPFRI
Trigger: AATTCTAAATGGCTGGACGCACACTACGACCCCATG...CCCAGGGCTGTGATAGGGTGTTAGCACAGCAGAGACCCCCAGCCTTGCCATTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp GGCAGCTCACAACCACCTGTAACTCCAGCTCCTGGGGAATCCAAGGCCCTTTTCTACTCCCCATCGCCATaGAAATCTGCCAGTGACAGG +
Preference number: 4 (lower is better)
Translates to: GSSQPPVTPAPGESKALFYSPSP*KSASDR
Trigger: CCTGTCACTGGCAGATTTGCATGGCGATGGGGAGTA...GAAAAGGGCCTTGGATTCCCCAGGAGCTGGAGTTACAGGTGGTTGTGAGCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR GCA 90 bp AGGCTCTTGTCGGCATCTGCCTCTTGGGTCACTTCCCAGGTCCCAGGTCCAGACTTCTCAGGATATAGATaGTCCCATTTCGGCAGGCAG +
Preference number: 4 (lower is better)
Translates to: RLLSASASWVTSQVPGPDFSGYR*SHFGRQ
Trigger: CTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAA...GTCTGGACCTGGGACCTGGGAAGTGACCCAAGAGGCAGATGCCGACAAGAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR GCA 90 bp GTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGACTGTGTCAGAGAGGGCACTCAACTCGATaGAGTACTTGGGGTGTTTGG +
Preference number: 4 (lower is better)
Translates to: VLLLRSLAEVGSKGLCQRGHSTR*STWGVW
Trigger: CCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCC...TCTCTGACACAGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR GCA 90 bp GTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGTGACTCTCTTGGGTGCTaGCCACCACCAGGACCTTGT +
Preference number: 4 (lower is better)
Translates to: VSEKNRELLSHYIATGGSDSLGC*PPPGPC
Trigger: ACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTC...ACTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR GCA 90 bp AGTGGGTTCCGAGGAGGAGGAGCTGATTCCGAGCACCCCGTGTCTTGTTGCTCACCCTTCCACAAACACTaGTGTGCGCTTCAGGATCTT +
Preference number: 4 (lower is better)
Translates to: SGFRGGGADSEHPVSCCSPFHKH*CALQDL
Trigger: AAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGG...TGAGCAACAAGACACGGGGTGCTCGGAATCAGCTCCTCCTCCTCGGAACCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp ATGATCAGGCCGCCACCTCTAGTAGTCATGATGAGGGTGTTGTCTTCTCGCCCGTGTGGATGTTGGCCATaGGGTCGTAGTGTGCGTCCA +
Preference number: 4 (lower is better)
Translates to: MIRPPPLVVMMRVLSSRPCGCWP*GRSVRP
Trigger: TGGACGCACACTACGACCCCATGGCCAACATCCACA...CGGGCGAGAAGACAACACCCTCATCATGACTACTAGAGGTGGCGGCCTGATCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR CCA 90 bp GAGGGAAAGACAAGGCAGAGGGGGCAACTTGACCTCCCCTCTTCACTAGCAGCAAGAAGGTGTGGATGTTaGCCATGGGGTCGTAGTGTG +
Preference number: 4 (lower is better)
Translates to: EGKTRQRGQLDLPSSLAARRCGC*PWGRSV
Trigger: CACACTACGACCCCATGGCCAACATCCACACCTTCT...TGCTGCTAGTGAAGAGGGGAGGTCAAGTTGCCCCCTCTGCCTTGTCTTTCCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp GGTCCAGCTGTGCCTCACTGGATGATGCACAAAGAACCCTTTGCTCTCCTTGCTCAGGAGGAGAAGGTGTaGATGTTGGCCATGGGGTCG +
Preference number: 4 (lower is better)
Translates to: GPAVPHWMMHKEPFALLAQEEKV*MLAMGS
Trigger: CGACCCCATGGCCAACATCCACACCTTCTCCTCCTG...AGCAAGGAGAGCAAAGGGTTCTTTGTGCATCATCCAGTGAGGCACAGCTGGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp ATCACAGCCCTGGGTCCCATAGTCTTCTCCAGCCTCATCCTACTGCTTCCCCAGGGGTTTGGAGGTAACTaGGGCAGGCTGAACTTGAAG +
Preference number: 4 (lower is better)
Translates to: ITALGPIVFSSLILLLPQGFGGN*GRLNLK
Trigger: CTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCC...CTGGGGAAGCAGTAGGATGAGGCTGGAGAAGACTATGGGACCCAGGGCTGTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR CCA 90 bp AGCACCCCGTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGACTGTTAAGGGGTCAATCTaGTCCTCTTTGGCTTGGTTC +
Preference number: 4 (lower is better)
Translates to: STPCLVAQVTGRGGEQGTVKGSI*SSLAWF
Trigger: GAACCAAGCCAAAGAGGACCAGATTGACCCCTTAAC...AGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACACGGGGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp GTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGTGCTCCAGGAGGTTCATaGTCAGGATGGCTGCAGGCA +
Preference number: 4 (lower is better)
Translates to: VSEKNRELLSHYIATGGSAPGGS*SGWLQA
Trigger: TGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGC...ACTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp GTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGTACTGCATCCGGGGCATaGATGACATTGAGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: VSEKNRELLSHYIATGGSTASGA*MTLSRA
Trigger: GGCCCTGCTCAATGTCATCCATGCCCCGGATGCAGT...ACTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp GGTCCAGCTGTGCCTCACTGGATGATGCACAAAGAACCCTTTGCTCTCCTTGCTGGCCAAAGCACAGGCTaGTTACTGCATCCGGGGCAT +
Preference number: 4 (lower is better)
Translates to: GPAVPHWMMHKEPFALLAGQSTG*LLHPGH
Trigger: ATGCCCCGGATGCAGTAACCAGCCTGTGCTTTGGCC...AGCAAGGAGAGCAAAGGGTTCTTTGTGCATCATCCAGTGAGGCACAGCTGGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp AGGCTGGGGGTCTCTGCTGTGCTAACACCCTATCACAGCCCTGGGTCCCATAGTTGGGTAACTGAGTCCTaGTACCAGCAAGGGAACCTT +
Preference number: 4 (lower is better)
Translates to: RLGVSAVLTPYHSPGSHSWVTES*YQQGNL
Trigger: AAGGTTCCCTTGCTGGTACCAGGACTCAGTTACCCA...ACTATGGGACCCAGGGCTGTGATAGGGTGTTAGCACAGCAGAGACCCCCAGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR CAA 72 bp GAGGGGGATGGGCAATATGAGAACGAGGATGTTTCTTaGGTCCAGACCCACTGTCTCTTAGCCTGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: EGDGQYENEDVS*VQTHCLLAWAL
Trigger: CAGGGCCCAGGCTAAGAGACAGTGGGTCTGGACCAAAGAAACATCCTCGTTCTCATATTGCCCATCCCCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR TCA 90 bp CCTGATCAGACTGGGGAAAATGTTGCTCTCCATGGAGCAGGGCTCCTGCTTCTCATGCAAATCTGCCAGTaGCAGGCAGGAGGAGAAGGT +
Preference number: 4 (lower is better)
Translates to: PDQTGENVALHGAGLLLLMQICQ*QAGGEG
Trigger: ACCTTCTCCTCCTGCCTGTCACTGGCAGATTTGCAT...GAGAAGCAGGAGCCCTGCTCCATGGAGAGCAACATTTTCCCCAGTCTGATCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR TCA 90 bp GTCTGGCAATACTGGAAGTCACTGAATCCGAAAGGCTCCATTTTGTTTGTGGAGCCACAGCATGCAGCTTaGGGGGCTCGCGAGCTGTGG +
Preference number: 4 (lower is better)
Translates to: VWQYWKSLNPKGSILFVEPQHAA*GARELW
Trigger: CCACAGCTCGCGAGCCCCTCAAGCTGCATGCTGTGG...CTCCACAAACAAAATGGAGCCTTTCGGATTCAGTGACTTCCAGTATTGCCAGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp AGGAATGGCAAGGCTGGGGGTCTCTGCTGTGCTAACACCCTATCACAGCCCTGGAGAAACCTGAGTGACTaGACAGACAAAGGCACGTCT +
Preference number: 4 (lower is better)
Translates to: RNGKAGGLCCANTLSQPWRNLSD*TDKGTS
Trigger: AGACGTGCCTTTGTCTGTGCAGTCACTCAGGTTTCT...CCAGGGCTGTGATAGGGTGTTAGCACAGCAGAGACCCCCAGCCTTGCCATTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp TGTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGCATGGTCAGGATGGCTaGAGGCATCTGCACTGTCCA +
Preference number: 4 (lower is better)
Translates to: CVREEQGAAVSLHCYRGKHGQDG*RHLHCP
Trigger: TGGACAGTGCAGATGCCTGCAGCCATCCTGACCATG...CTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR GCA 90 bp GAGGTGGGGAGCAAGGGACTGTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTCCCTTCCACAAACACTaGTGTGCGCTTCAGGATCTT +
Preference number: 4 (lower is better)
Translates to: EVGSKGLCQRRTGSCCLTPFHKH*CALQDL
Trigger: AAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGG...AGTGAGACAGCAGCTCCCTGTTCTTCTCTGACACAGTCCCTTGCTCCCCACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp TGGGGAGCAAGGGACTGTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTACAGGAAGCAGACATaGAGCCCCAGAACGGGTCGA +
Preference number: 4 (lower is better)
Translates to: WGARDCVREEQGAAVSLHYRKQT*SPRTGR
Trigger: TCGACCCGTTCTGGGGCTGCATGTCTGCTTCCTGTA...ATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACACAGTCCCTTGCTCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp GAGCTTAACTGGAGCCCCAGAGAGAGAATAACAGCCAGCCCTGAGGAGGAATGCGGGTTTGGAGGTAACTaGGGCAGGCTGAACTTGAAG +
Preference number: 4 (lower is better)
Translates to: ELNWSPRERITASPEEECGFGGN*GRLNLK
Trigger: CTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCC...GCATTCCTCCTCAGGGCTGGCTGTTATTCTCTCTCTGGGGCTCCAGTTAAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp AGGCTGGGGGTCTCTGCTGTGCTAACACCCTATCACAGCCCTGGGTCCCATAGTCAATCTGGTCCTCTTTaGCTTGGTTCCAAACGTCCT +
Preference number: 4 (lower is better)
Translates to: RLGVSAVLTPYHSPGSHSQSGPL*LGSKRP
Trigger: AGGACGTTTGGAACCAAGCCAAAGAGGACCAGATTG...ACTATGGGACCCAGGGCTGTGATAGGGTGTTAGCACAGCAGAGACCCCCAGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR CAA 72 bp CACACCAGGCTGAACCTGATCAGACTGGGGAAAATGTaGCTCTCCATGGAGCAGGGCTCCTGCTTCTCAAGT +
Preference number: 4 (lower is better)
Translates to: HTRLNLIRLGKM*LSMEQGSCFSS
Trigger: ACTTGAGAAGCAGGAGCCCTGCTCCATGGAGAGCAACATTTTCCCCAGTCTGATCAGGTTCAGCCTGGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR GCA 90 bp TGCAAGCAGGCAAAGAAGCAGCAAGCCTTCCTTCTTCCATTGTCCTTATTTATGTTCAGGCGGGGCTGCTaGCCACCTGGGCCAAGGTCT +
Preference number: 4 (lower is better)
Translates to: CKQAKKQQAFLLPLSLFMFRRGC*PPGPRS
Trigger: AGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAA...CATAAATAAGGACAATGGAAGAAGGAAGGCTTGCTGCTTCTTTGCCTGCTTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR GCA 90 bp GCAGGCAGCAGTCAACCGGAACTCCACATCAAACTGGCCGGAAACCTCCAGGAAAGAAACCTGAGTGACTaGACAGACAAAGGCACGTCT +
Preference number: 4 (lower is better)
Translates to: AGSSQPELHIKLAGNLQERNLSD*TDKGTS
Trigger: AGACGTGCCTTTGTCTGTGCAGTCACTCAGGTTTCT...TTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR GCA 90 bp ATCCGAAAGGCTCCATTTTGTTTGTGGAGACTTGAATGCTGGCGCAGGGCTCAGGTTCCTTGCTCTCAGTaGCTAGCACCAGACAGGACG +
Preference number: 4 (lower is better)
Translates to: IRKAPFCLWRLECWRRAQVPCSQ*LAPDRT
Trigger: CGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAAC...CTGAGCCCTGCGCCAGCATTCAAGTCTCCACAAACAAAATGGAGCCTTTCGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp TGTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGTTGTGGGTGAAGCCATaGAGACTCTCTTGGGTGCTG +
Preference number: 4 (lower is better)
Translates to: CVREEQGAAVSLHCYRGKLWVKP*RLSWVL
Trigger: CAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAA...CTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp ATCATGTCTGAGATGCCCTTGCTACTGAGACTCTCCACAAAGGTTTCCAGTGGGGTCCTGGGCTCGTGTTaGTCCATGAGGAAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: IMSEMPLLLRLSTKVSSGVLGSC*SMRKVA
Trigger: TGCCACCTTCCTCATGGACCAACACGAGCCCAGGAC...CCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR CCA 90 bp GAGCTTAACTGGAGCCCCAGAGAGAGAATAACAGCCAGCCCTGAGGAGGAATGCTGGGTAACTGAGTCCTaGTACCAGCAAGGGAACCTT +
Preference number: 4 (lower is better)
Translates to: ELNWSPRERITASPEEECWVTES*YQQGNL
Trigger: AAGGTTCCCTTGCTGGTACCAGGACTCAGTTACCCA...GCATTCCTCCTCAGGGCTGGCTGTTATTCTCTCTCTGGGGCTCCAGTTAAGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CAA 72 bp GTCCCTTCCACAAACACTGCTGTGCGCTTCAGGATCTaGATGATCAGGCCGCCACCTCTAGTAGTCATGATG +
Preference number: 4 (lower is better)
Translates to: VPSTNTAVRFRI*MIRPPPLVVMM
Trigger: CATCATGACTACTAGAGGTGGCGGCCTGATCATCAAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR TCA 90 bp CATGGTGGTGATGACTGTCTGGCGCTTGATAACCTTGGACTTGTGCTGGTTCACATGCAAATCTGCCAGTaGCAGGCAGGAGGAGAAGGT +
Preference number: 4 (lower is better)
Translates to: HGGDDCLALDNLGLVLVHMQICQ*QAGGEG
Trigger: ACCTTCTCCTCCTGCCTGTCACTGGCAGATTTGCAT...GTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAGACAGTCATCACCACCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR TCA 90 bp GGATGTTTCTTTGGTCCAGACCCACTGTCTCTTAGCCTGGGCCCTGAAGTACCCAGATGCCCTTGCTACTaGGACTCTCCACAAAGGTTT +
Preference number: 4 (lower is better)
Translates to: GCFFGPDPLSLSLGPEVPRCPCY*DSPQRF
Trigger: AAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCT...GGGTACTTCAGGGCCCAGGCTAAGAGACAGTGGGTCTGGACCAAAGAAACATCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR TCA 90 bp GACCTCCCCTCTTCACTAGCAGCAAATCTGTCTGCTGGCTCAAGTGACAGGCTCAGATGCCCTTGCTACTaGGACTCTCCACAAAGGTTT +
Preference number: 4 (lower is better)
Translates to: DLPSSLAANLSAGSSDRLRCPCY*DSPQRF
Trigger: AAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCT...GAGCCTGTCACTTGAGCCAGCAGACAGATTTGCTGCTAGTGAAGAGGGGAGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS-3UTR GCA 90 bp GTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGTATGGCTGCAGGCATCTaGACTGTCCACAGCTTCTTA +
Preference number: 4 (lower is better)
Translates to: VSEKNRELLSHYIATGGSMAAGI*TVHSFL
Trigger: TAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCAT...ACTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR GCA 90 bp TGGGGAGCAAGGGACTGTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATCATGGGGTCGTAGTGTaGGTCCAGCCATTTAGAATT +
Preference number: 4 (lower is better)
Translates to: WGARDCVREEQGAAVSLHHGVVV*VQPFRI
Trigger: AATTCTAAATGGCTGGACGCACACTACGACCCCATG...ATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACACAGTCCCTTGCTCCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp GTCTGGCAATACTGGAAGTCACTGAATCCGAAAGGCTCCATTTTGTTTGTGGAGGTCCTGGGCTCGTGTTaGTCCATGAGGAAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: VWQYWKSLNPKGSILFVEVLGSC*SMRKVA
Trigger: TGCCACCTTCCTCATGGACCAACACGAGCCCAGGAC...CTCCACAAACAAAATGGAGCCTTTCGGATTCAGTGACTTCCAGTATTGCCAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp TGGGGAGCAAGGGACTGTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATCAATCTGGTCCTCTTTaGCTTGGTTCCAAACGTCCT +
Preference number: 4 (lower is better)
Translates to: WGARDCVREEQGAAVSLHQSGPL*LGSKRP
Trigger: AGGACGTTTGGAACCAAGCCAAAGAGGACCAGATTG...ATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACACAGTCCCTTGCTCCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CCA 90 bp AAGGCTCCATTTTGTTTGTGGAGACTTGAATGCTGGCGCAGGGCTCAGGCAGCTGTTAAGGGGTCAATCTaGTCCTCTTTGGCTTGGTTC +
Preference number: 4 (lower is better)
Translates to: KAPFCLWRLECWRRAQAAVKGSI*SSLAWF
Trigger: GAACCAAGCCAAAGAGGACCAGATTGACCCCTTAAC...AGCTGCCTGAGCCCTGCGCCAGCATTCAAGTCTCCACAAACAAAATGGAGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
3UTR CAA 72 bp TGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATaGCTACCGGGGGAAGTAGTCTGGCAATACTGGAAG +
Preference number: 4 (lower is better)
Translates to: CQRRTGSCCLTT*LPGEVVWQYWK
Trigger: CTTCCAGTATTGCCAGACTACTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR TCA 90 bp CTAGGGGAGTCTGCACAGAAGCAAGTTAGAAAGGAAGTGTCCCGCCCGAGAAATGAGGTATTCTGCAGGTaGAGTGTGAGCTTAAAGGTG +
Preference number: 4 (lower is better)
Translates to: LGESAQKQVRKEVSRPRNEVFCR*SVSLKV
Trigger: CACCTTTAAGCTCACACTTCACCTGCAGAATACCTC...ATTTCTCGGGCGGGACACTTCCTTTCTAACTTGCTTCTGTGCAGACTCCCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR GCA 90 bp GAGGAGCTGCCAAGCTCTAATGGTGCCAGAGCTGACAACGGCTTAGAGTTAATCAGAAACCTGAGTGACTaGACAGACAAAGGCACGTCT +
Preference number: 4 (lower is better)
Translates to: EELPSSNGARADNGLELIRNLSD*TDKGTS
Trigger: AGACGTGCCTTTGTCTGTGCAGTCACTCAGGTTTCT...GATTAACTCTAAGCCGTTGTCAGCTCTGGCACCATTAGAGCTTGGCAGCTCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp GAGGAGCTGCCAAGCTCTAATGGTGCCAGAGCTGACAACGGCTTAGAGTTAATCACCTTGGACTTGTGCTaGTTCACAAACGCCTCCATT +
Preference number: 4 (lower is better)
Translates to: EELPSSNGARADNGLELITLDLC*FTNASI
Trigger: AATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGT...GATTAACTCTAAGCCGTTGTCAGCTCTGGCACCATTAGAGCTTGGCAGCTCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CAA 72 bp GTGGTCAGCTTAGGTTTTGTGGACAAAGCTGTGCAGTaGAGTCTCGCCTTCTTGGAGCAATGCTTCCCTTTC +
Preference number: 4 (lower is better)
Translates to: VVSLGFVDKAVQ*SLAFLEQCFPF
Trigger: GAAAGGGAAGCATTGCTCCAAGAAGGCGAGACTCAACTGCACAGCTTTGTCCACAAAACCTAAGCTGACCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR GCA 90 bp TGCAAGCAGGCAAAGAAGCAGCAAGCCTTCCTTCTTCCATTGTCCTTATTTATGGTTCCTTGCTCTCAGTaGCTAGCACCAGACAGGACG +
Preference number: 4 (lower is better)
Translates to: CKQAKKQQAFLLPLSLFMVPCSQ*LAPDRT
Trigger: CGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAAC...CATAAATAAGGACAATGGAAGAAGGAAGGCTTGCTGCTTCTTTGCCTGCTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR GCA 90 bp TGGGCACTCAACTCGATGCAGTACTTGGGGTGTTTGGAGTCTCTTCTCAGGATAAGACAAAGGCACGTCTaGCTTTTCCCTCTTTGGCTT +
Preference number: 4 (lower is better)
Translates to: WALNSMQYLGCLESLLRIRQRHV*LFPLWL
Trigger: AAGCCAAAGAGGGAAAAGGCAGACGTGCCTTTGTCT...TATCCTGAGAAGAGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR CCA 90 bp TTACTAGGCAAGCATAGTATGACACTGTGTTTTATGGTAGGACCTGGTCATATGACATGGGGCTCAGGCTaGACTCCAGGGCCTGGACAT +
Preference number: 4 (lower is better)
Translates to: LLGKHSMTLCFMVGPGHMTWGSG*TPGPGH
Trigger: ATGTCCAGGCCCTGGAGTCCAGCCTGAGCCCCATGT...CATATGACCAGGTCCTACCATAAAACACAGTGTCATACTATGCTTGCCTAGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp CTAGGGGAGTCTGCACAGAAGCAAGTTAGAAAGGAAGTGTCCCGCCCGAGAAATAGTACTTGGGGTGTTTaGAGTCTCTTCTCAGGATAT +
Preference number: 4 (lower is better)
Translates to: LGESAQKQVRKEVSRPRNSTWGV*SLFSGY
Trigger: ATATCCTGAGAAGAGACTCCAAACACCCCAAGTACT...ATTTCTCGGGCGGGACACTTCCTTTCTAACTTGCTTCTGTGCAGACTCCCCTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR TCA 90 bp TGCAAGCAGGCAAAGAAGCAGCAAGCCTTCCTTCTTCCATTGTCCTTATTTATGGAAGCACTAGCACCTTaGTCATGTCTGAGATGCCCT +
Preference number: 4 (lower is better)
Translates to: CKQAKKQQAFLLPLSLFMEALAP*SCLRCP
Trigger: AGGGCATCTCAGACATGATCAAGGTGCTAGTGCTTC...CATAAATAAGGACAATGGAAGAAGGAAGGCTTGCTGCTTCTTTGCCTGCTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp GTCTGGCAATACTGGAAGTCACTGAATCCGAAAGGCTCCATTTTGTTTGTGGAGACTCGATGCAGTACTTaGGGTGTTTGGAGTCTCTTC +
Preference number: 4 (lower is better)
Translates to: VWQYWKSLNPKGSILFVETRCST*GVWSLF
Trigger: GAAGAGACTCCAAACACCCCAAGTACTGCATCGAGT...CTCCACAAACAAAATGGAGCCTTTCGGATTCAGTGACTTCCAGTATTGCCAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR TCA 90 bp TTACTAGGCAAGCATAGTATGACACTGTGTTTTATGGTAGGACCTGGTCATATGCTGCAGAAACCTGAGTaGCTGCACAGACAAAGGCAC +
Preference number: 4 (lower is better)
Translates to: LLGKHSMTLCFMVGPGHMLQKPE*LHRQRH
Trigger: GTGCCTTTGTCTGTGCAGTCACTCAGGTTTCTGCAG...CATATGACCAGGTCCTACCATAAAACACAGTGTCATACTATGCTTGCCTAGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CCA 90 bp TTACTAGGCAAGCATAGTATGACACTGTGTTTTATGGTAGGACCTGGTCATATGAGAAGGTGTGGATGTTaGCCATGGGGTCGTAGTGTG +
Preference number: 4 (lower is better)
Translates to: LLGKHSMTLCFMVGPGHMRRCGC*PWGRSV
Trigger: CACACTACGACCCCATGGCCAACATCCACACCTTCT...CATATGACCAGGTCCTACCATAAAACACAGTGTCATACTATGCTTGCCTAGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
3UTR CAA 72 bp ACATCAAATATTTTTGTTCTGATTTCACAGCATGACTaGGGTGAAAGGGACTGGGATGTCATGATCCAACCT +
Preference number: 4 (lower is better)
Translates to: TSNIFVLISQHD*GERDWDVMIQP
Trigger: AGGTTGGATCATGACATCCCAGTCCCTTTCACCCAAGTCATGCTGTGAAATCAGAACAAAAATATTTGATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS GCA 90 bp TCCGTCAGCACTGTGGGTCCTTTGAGCACCTTCAGGCGGGGCTGCTaGCCACCTGGGCCAAGGTCTCCCACCACCAGCTTGTACTCCCCA +
Preference number: 5 (lower is better)
Translates to: SVSTVGPLSTFRRGC*PPGPRSPTTSLYSP
Trigger: TGGGGAGTACAAGCTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053506.8
ENSMUST00000237085.2
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS CCA 90 bp CACTGTGGGTCCTTTGAGCACCTTCAGGCGGGGCTGCTGCCCACCTaGGCCAAGGTCTCCCACCACCAGCTTGTACTCCCCATCGCCATG +
Preference number: 5 (lower is better)
Translates to: HCGSFEHLQAGLLPT*AKVSHHQLVLPIAM
Trigger: CATGGCGATGGGGAGTACAAGCTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053506.8
ENSMUST00000237085.2
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp GGGAGCAGCTGCTGGCTGTGTGGCTCTAGCTCCTCACACGGACCCCGTCTACTTGGTGGGGCCCAGGCCTaGAACCACAGCATGCAGCTT +
Preference number: 5 (lower is better)
Translates to: GSSCWLCGSSSSHGPRLLGGAQA*NHSMQL
Trigger: AAGCTGCATGCTGTGGTTCAAGGCCTGGGCCCCACC...AAGTAGACGGGGTCCGTGTGAGGAGCTAGAGCCACACAGCCAGCAGCTGCTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CAA 90 bp CTGTGCTCCAAGGTCCAGATCAAAGCCCGTGCCTTCCAGCCTCCAGCTCTGGAGGCCATGCAGACTCTCTaGGGTGCTGCCCACCACCAG +
Preference number: 5 (lower is better)
Translates to: LCSKVQIKARAFQPPALEAMQTL*GAAHHQ
Trigger: CTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGC...CTCCAGAGCTGGAGGCTGGAAGGCACGGGCTTTGATCTGGACCTTGGAGCACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CAA 90 bp CCTGATCAGACTGGGGAAAATGTTGCTCTCCATGGAGCAGGGCTCCTGCTTCTCCCCACCACCAGGACCTaGTGTACCCGGACCAGCCCC +
Preference number: 5 (lower is better)
Translates to: PDQTGENVALHGAGLLLLPTTRT*CTRTSP
Trigger: GGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGG...GAGAAGCAGGAGCCCTGCTCCATGGAGAGCAACATTTTCCCCAGTCTGATCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CAA 90 bp CTAGCACCTAGGGAGGGAAAGACAAGGCAGAGGGGGCAACTTGACCTCCCCTCTTGTCCTGGGCTCGTGTaGGTCCATGAGGAAGGTGGC +
Preference number: 5 (lower is better)
Translates to: LAPREGKTRQRGQLDLPSCPGLV*VHEEGG
Trigger: GCCACCTTCCTCATGGACCAACACGAGCCCAGGACA...AGAGGGGAGGTCAAGTTGCCCCCTCTGCCTTGTCTTTCCCTCCCTAGGTGCTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp GCACCTAGGGAGGGAAAGACAAGGCAGAGGGGGCAACTTGACCTCCCCTCTTCATGTCCTGGGCTCGTGTaGGTCCATGAGGAAGGTGGC +
Preference number: 5 (lower is better)
Translates to: APREGKTRQRGQLDLPSSCPGLV*VHEEGG
Trigger: GCCACCTTCCTCATGGACCAACACGAGCCCAGGACA...TGAAGAGGGGAGGTCAAGTTGCCCCCTCTGCCTTGTCTTTCCCTCCCTAGGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp GAGGTGGGGAGCAAGGGACTGTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACCACAGCATGCAGCTaGAGGGGCTCGCGAGCTGTG +
Preference number: 5 (lower is better)
Translates to: EVGSKGLCQRRTGSCCLTTTACS*RGSRAV
Trigger: CACAGCTCGCGAGCCCCTCAAGCTGCATGCTGTGGT...AGTGAGACAGCAGCTCCCTGTTCTTCTCTGACACAGTCCCTTGCTCCCCACCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp GTGTCTTGTTGCTCAGGTCACTGGCAGAGGTGGGGAGCAAGGGACTGTGTCAGAGGTGGGGCCCAGGCCTaGAACCACAGCATGCAGCTT +
Preference number: 5 (lower is better)
Translates to: VSCCSGHWQRWGARDCVRGGAQA*NHSMQL
Trigger: AAGCTGCATGCTGTGGTTCAAGGCCTGGGCCCCACC...TCTGACACAGTCCCTTGCTCCCCACCTCTGCCAGTGACCTGAGCAACAAGACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp CTCCCAGTGCCACCAGCCCCAGCTCCGCTATCTAGCTCCGCATTCCATTTCAGAGTGCGCTTCAGGATCTaGATGATCAGGCCGCCACCT +
Preference number: 5 (lower is better)
Translates to: LPVPPAPAPLSSSAFHFRVRFRI*MIRPPP
Trigger: AGGTGGCGGCCTGATCATCAAGATCCTGAAGCGCAC...TCTGAAATGGAATGCGGAGCTAGATAGCGGAGCTGGGGCTGGTGGCACTGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS GCA 90 bp CAGGCAGGAGGAGAAGGTGTGGATGTTGGCCATGGGGTCGTAGTGTaGGTCCAGCCATTTAGAATTGGCTTCGTTGCTCTCAGCTCGCCC +
Preference number: 5 (lower is better)
Translates to: QAGGEGVDVGHGVVV*VQPFRIGFVALSSP
Trigger: GGGCGAGCTGAGAGCAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053506.8
ENSMUST00000237085.2
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp TGTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGAGCACTGTGGGTCCTTaGAGCACCTTCAGGCGGGGC +
Preference number: 5 (lower is better)
Translates to: CVREEQGAAVSLHCYRGKSTVGP*STFRRG
Trigger: GCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCT...CTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp CTAGCCTCTGTCTCCTGGGATGAAAGGCAGGAGTCACCTTCCCTGGGCCTGAGCCTGGTCCTCTTTGGCTaGGTTCCAAACGTCCTGTTC +
Preference number: 5 (lower is better)
Translates to: LASVSWDERQESPSLGLSLVLFG*VPNVLF
Trigger: GAACAGGACGTTTGGAACCAAGCCAAAGAGGACCAG...GCTCAGGCCCAGGGAAGGTGACTCCTGCCTTTCATCCCAGGAGACAGAGGCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CAA 90 bp GGCAGCTCACAACCACCTGTAACTCCAGCTCCTGGGGAATCCAAGGCCCTTTTCCTGGGCAGGCTCATCTaGGCCAAAATGGTGAAGGCC +
Preference number: 5 (lower is better)
Translates to: GSSQPPVTPAPGESKALFLGRLI*AKMVKA
Trigger: GGCCTTCACCATTTTGGCCAAGATGAGCCTGCCCAG...GAAAAGGGCCTTGGATTCCCCAGGAGCTGGAGTTACAGGTGGTTGTGAGCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CAA 90 bp AGCATGGAGAGCAGGGGAGGGGTCTCAAGAGCACCAAACGCTTATCTGCTGCAAGGGGCATGGATGACATaGAGCAGGGCCTTGTCTCGG +
Preference number: 5 (lower is better)
Translates to: SMESRGGVSRAPNAYLLQGAWMT*SRALSR
Trigger: CCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCC...TTGCAGCAGATAAGCGTTTGGTGCTCTTGAGACCCCTCCCCTGCTCTCCATGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CAA 90 bp GGTCCAGCTGTGCCTCACTGGATGATGCACAAAGAACCCTTTGCTCTCCTTGCTACCACAGCATGCAGCTaGAGGGGCTCGCGAGCTGTG +
Preference number: 5 (lower is better)
Translates to: GPAVPHWMMHKEPFALLATTACS*RGSRAV
Trigger: CACAGCTCGCGAGCCCCTCAAGCTGCATGCTGTGGT...AGCAAGGAGAGCAAAGGGTTCTTTGTGCATCATCCAGTGAGGCACAGCTGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CAA 90 bp ACAGGCATGTTGATGTGGGCACTCAGCAGGGGAGCACTCTGGCCTTCCCGAAGCCTGCCTTTTCCCTCTTaGGCTTGGTTCCAAACGTCC +
Preference number: 5 (lower is better)
Translates to: TGMLMWALSRGALWPSRSLPFPS*AWFQTS
Trigger: GGACGTTTGGAACCAAGCCAAAGAGGGAAAAGGCAG...GCTTCGGGAAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACATGCCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS CCA 90 bp TCACTCACAGGCATGTTGATGTGGGCACTCAGCAGGGGAGCACTCTaGCCTTCCCGAAGCACTAGCACCTTGATCATGTCTGAGATGCCC +
Preference number: 5 (lower is better)
Translates to: SLTGMLMWALSRGAL*PSRSTSTLIMSEMP
Trigger: GGGCATCTCAGACATGATCAAGGTGCTAGTGCTTCGGGAAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACATGCCTGTGAGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000237085.2
CDS-3UTR CAA 90 bp CAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGTAGTCTGTCCTGGGCTCGTGTaGGTCCATGAGGAAGGTGGC +
Preference number: 5 (lower is better)
Translates to: QRRTGSCCLTTLLPGEVVCPGLV*VHEEGG
Trigger: GCCACCTTCCTCATGGACCAACACGAGCCCAGGACA...GACTACTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp ACAGGCATGTTGATGTGGGCACTCAGCAGGGGAGCACTCTGGCCTTCCCGAAGCTGGCGCTTGATAACCTaGGACTTGTGCTGGTTCACA +
Preference number: 5 (lower is better)
Translates to: TGMLMWALSRGALWPSRSWRLIT*DLCWFT
Trigger: TGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCA...GCTTCGGGAAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACATGCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp GAGGTGGGGAGCAAGGGACTGTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTGTCATGATGAGGGTGTaGTCTTCTCGCCCGTATCGG +
Preference number: 5 (lower is better)
Translates to: EVGSKGLCQRRTGSCCLTVMMRV*SSRPYR
Trigger: CCGATACGGGCGAGAAGACAACACCCTCATCATGAC...AGTGAGACAGCAGCTCCCTGTTCTTCTCTGACACAGTCCCTTGCTCCCCACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp GACCTCCCCTCTTCACTAGCAGCAAATCTGTCTGCTGGCTCAAGTGACAGGCTCGTGCGCTTCAGGATCTaGATGATCAGGCCGCCACCT +
Preference number: 5 (lower is better)
Translates to: DLPSSLAANLSAGSSDRLVRFRI*MIRPPP
Trigger: AGGTGGCGGCCTGATCATCAAGATCCTGAAGCGCAC...GAGCCTGTCACTTGAGCCAGCAGACAGATTTGCTGCTAGTGAAGAGGGGAGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS TCA 90 bp ATCGGCCAAAGCACAGGCTGGTTACTGCATCCTTGGCCAAAATGGTaGAGGCCTCAGGGTCCAGCACTAGGAGTTCCTTGCTCTCAGTGC +
Preference number: 5 (lower is better)
Translates to: IGQSTGWLLHPWPKW*RPQGPALGVPCSQC
Trigger: GCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAGGATGCAGTAACCAGCCTGTGCTTTGGCCGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238170.2
CDS CCA 90 bp ACCTCCAGGAAGACAGGGACACTGGGCAGGCTCATCTCTTTGGCTTaGTTCCAAACGTCCTGTTCCAAAGGGTTTGGAGGTAACTGGGGC +
Preference number: 5 (lower is better)
Translates to: TSRKTGTLGRLISLA*FQTSCSKGFGGNWG
Trigger: GCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAGATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237085.2
CDS-3UTR CAA 90 bp CACAGGCATGTTGATGTGGGCACTCAGCAGGGGAGCACTCTGGCCTTCCCGAAGTCCAGCCATTTAGAATaGGCTTCGTTGCTCTCAGCT +
Preference number: 5 (lower is better)
Translates to: HRHVDVGTQQGSTLAFPKSSHLE*ASLLSA
Trigger: AGCTGAGAGCAACGAAGCCAATTCTAAATGGCTGGA...CTTCGGGAAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACATGCCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp TGGGCACTCAACTCGATGCAGTACTTGGGGTGTTTGGAGTCTCTTCTCAGGATAAGCACTGTGGGTCCTTaGAGCACCTTCAGGCGGGGC +
Preference number: 5 (lower is better)
Translates to: WALNSMQYLGCLESLLRISTVGP*STFRRG
Trigger: GCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCT...TATCCTGAGAAGAGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS-3UTR CAA 90 bp CTCCCAGTGCCACCAGCCCCAGCTCCGCTATCTAGCTCCGCATTCCATTTCAGAATGTCTGAGATGCCCTaGCTACTGAGACTCTCCACA +
Preference number: 5 (lower is better)
Translates to: LPVPPAPAPLSSSAFHFRMSEMP*LLRLST
Trigger: TGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACAT...TCTGAAATGGAATGCGGAGCTAGATAGCGGAGCTGGGGCTGGTGGCACTGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS CCA 90 bp ACTCCACATCAAACTGGCCGGAAACCTCCAGGAAGACAGGGACACTaGGCAGGCTCATCTCTTTGGCTTGGTTCCAAACGTCCTGTTCCA +
Preference number: 5 (lower is better)
Translates to: TPHQTGRKPPGRQGH*AGSSLWLGSKRPVP
Trigger: TGGAACAGGACGTTTGGAACCAAGCCAAAGAGATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237085.2
CDS-3UTR CAA 90 bp CTAGCACCTAGGGAGGGAAAGACAAGGCAGAGGGGGCAACTTGACCTCCCCTCTTCCAGCCATTTAGAATaGGCTTCGTTGCTCTCAGCT +
Preference number: 5 (lower is better)
Translates to: LAPREGKTRQRGQLDLPSSSHLE*ASLLSA
Trigger: AGCTGAGAGCAACGAAGCCAATTCTAAATGGCTGGA...AGAGGGGAGGTCAAGTTGCCCCCTCTGCCTTGTCTTTCCCTCCCTAGGTGCTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp TGTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGGTCATGATGAGGGTGTaGTCTTCTCGCCCGTATCGG +
Preference number: 5 (lower is better)
Translates to: CVREEQGAAVSLHCYRGKVMMRV*SSRPYR
Trigger: CCGATACGGGCGAGAAGACAACACCCTCATCATGAC...CTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS CCA 90 bp GTGACTGCACAGACAAAGGCACGTCTGCCTTTTCCCTCTTTGGCTTaGTTCCAAACGTCCTGTTCCAAAGGGTTTGGAGGTAACTGGGGC +
Preference number: 5 (lower is better)
Translates to: VTAQTKARLPFPSLA*FQTSCSKGFGGNWG
Trigger: GCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAGGGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS CCA 90 bp CGGAAACCTCCAGGAAGACAGGGACACTGGGCAGGCTCATCTCTTTaGCTTGGTTCCAAACGTCCTGTTCCAAAGGGTTTGGAGGTAACT +
Preference number: 5 (lower is better)
Translates to: RKPPGRQGHWAGSSL*LGSKRPVPKGLEVT
Trigger: AGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAGATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237085.2
CDS-3UTR CAA 90 bp CAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGTAGTCCTGGTCCTCTTTGGCTaGGTTCCAAACGTCCTGTTC +
Preference number: 5 (lower is better)
Translates to: QRRTGSCCLTTLLPGEVVLVLFG*VPNVLF
Trigger: GAACAGGACGTTTGGAACCAAGCCAAAGAGGACCAG...GACTACTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp GTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGTCACAGCTTCTTACCCTaGTGGGTGAAGCCATGCAGA +
Preference number: 5 (lower is better)
Translates to: VSEKNRELLSHYIATGGSHSFLP*WVKPCR
Trigger: TCTGCATGGCTTCACCCACAAGGGTAAGAAGCTGTG...ACTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CAA 90 bp GTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGTCGAAGCACTAGCACCTaGATCATGTCTGAGATGCCC +
Preference number: 5 (lower is better)
Translates to: VSEKNRELLSHYIATGGSRSTST*IMSEMP
Trigger: GGGCATCTCAGACATGATCAAGGTGCTAGTGCTTCG...ACTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS GCA 90 bp GTCATGGTGGTGATGACTGTCTGGCGCTTGATAACCTTGGACTTGTaGTGGTTCACAAACGCCTCCATTTCACTCAGCTCCAGCTGCAGA +
Preference number: 5 (lower is better)
Translates to: VMVVMTVWRLITLDL*WFTNASISLSSSCR
Trigger: TCTGCAGCTGGAGCTGAGTGAAATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAGACAGTCATCACCACCATGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS CCA 90 bp AGCATCTCCTTCAGGGTTAAGGGGTCAATCTGGTCCTCTTTGGCTTaGTTCCAAACGTCCTGTTCCAAAGGGTTTGGAGGTAACTGGGGC +
Preference number: 5 (lower is better)
Translates to: SISFRVKGSIWSSLA*FQTSCSKGFGGNWG
Trigger: GCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAGGACCAGATTGACCCCTTAACCCTGAAGGAGATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp GAGCTTAACTGGAGCCCCAGAGAGAGAATAACAGCCAGCCCTGAGGAGGAATGCTCCAGCCATTTAGAATaGGCTTCGTTGCTCTCAGCT +
Preference number: 5 (lower is better)
Translates to: ELNWSPRERITASPEEECSSHLE*ASLLSA
Trigger: AGCTGAGAGCAACGAAGCCAATTCTAAATGGCTGGA...GCATTCCTCCTCAGGGCTGGCTGTTATTCTCTCTCTGGGGCTCCAGTTAAGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CAA 90 bp TGTGTCAGAGAAGAACAGGGAGCTGCTGTCTCACTACATTGCTACCGGGGGAAGATGTCTGAGATGCCCTaGCTACTGAGACTCTCCACA +
Preference number: 5 (lower is better)
Translates to: CVREEQGAAVSLHCYRGKMSEMP*LLRLST
Trigger: TGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACAT...CTTCCCCCGGTAGCAATGTAGTGAGACAGCAGCTCCCTGTTCTTCTCTGACACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS CCA 90 bp TCCCTGATGTCCTCCAGCATCTCCTTCAGGGTTAAGGGGTCAATCTaGTCCTCTTTGGCTTGGTTCCAAACGTCCTGTTCCAAAGGGTTT +
Preference number: 5 (lower is better)
Translates to: SLMSSSISFRVKGSI*SSLAWFQTSCSKGF
Trigger: AAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAGGACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS CCA 90 bp ATGGTGGTGATGACTGTCTGGCGCTTGATAACCTTGGACTTGTGCTaGTTCACAAACGCCTCCATTTCACTCAGCTCCAGCTGCAGAAAC +
Preference number: 5 (lower is better)
Translates to: MVVMTVWRLITLDLC*FTNASISLSSSCRN
Trigger: GTTTCTGCAGCTGGAGCTGAGTGAAATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAGACAGTCATCACCACCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS-3UTR CAA 90 bp GAGGAGCTGCCAAGCTCTAATGGTGCCAGAGCTGACAACGGCTTAGAGTTAATCTGGCGCTTGATAACCTaGGACTTGTGCTGGTTCACA +
Preference number: 5 (lower is better)
Translates to: EELPSSNGARADNGLELIWRLIT*DLCWFT
Trigger: TGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCA...GATTAACTCTAAGCCGTTGTCAGCTCTGGCACCATTAGAGCTTGGCAGCTCCTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CAA 90 bp CTAGGGGAGTCTGCACAGAAGCAAGTTAGAAAGGAAGTGTCCCGCCCGAGAAATCAGTACTTGGGGTGTTaGGAGTCTCTTCTCAGGATA +
Preference number: 5 (lower is better)
Translates to: LGESAQKQVRKEVSRPRNQYLGC*ESLLRI
Trigger: TATCCTGAGAAGAGACTCCAAACACCCCAAGTACTG...ATTTCTCGGGCGGGACACTTCCTTTCTAACTTGCTTCTGTGCAGACTCCCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CAA 90 bp TGCAAGCAGGCAAAGAAGCAGCAAGCCTTCCTTCTTCCATTGTCCTTATTTATGATTCGGACTTCCCCATaGGCCAGAGCAGCCATGACA +
Preference number: 5 (lower is better)
Translates to: CKQAKKQQAFLLPLSLFMIRTSP*ARAAMT
Trigger: TGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAAT...CATAAATAAGGACAATGGAAGAAGGAAGGCTTGCTGCTTCTTTGCCTGCTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS-3UTR CAA 90 bp TTACTAGGCAAGCATAGTATGACACTGTGTTTTATGGTAGGACCTGGTCATATGAACTCGATGCAGTACTaGGGGTGTTTGGAGTCTCTT +
Preference number: 5 (lower is better)
Translates to: LLGKHSMTLCFMVGPGHMNSMQY*GCLESL
Trigger: AAGAGACTCCAAACACCCCAAGTACTGCATCGAGTT...CATATGACCAGGTCCTACCATAAAACACAGTGTCATACTATGCTTGCCTAGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053506.8
CDS TCA 72 bp CAGGCAGTGGGCTCTCCGTCAGCACTGTGGGTCCTTTaGGCACCTTCAGGCGGGGCTGCTGCCCACCTGGGC +
Preference number: 6 (lower is better)
Translates to: QAVGSPSALWVL*APSGGAAAHLG
Trigger: GCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053506.8
ENSMUST00000237085.2
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS CAA 72 bp GCAGGCAGTGGGCTCTCCGTCAGCACTGTGGGTCCTTaGAGCACCTTCAGGCGGGGCTGCTGCCCACCTGGG +
Preference number: 6 (lower is better)
Translates to: AGSGLSVSTVGP*STFRRGCCPPG
Trigger: CCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053506.8
ENSMUST00000237085.2
ENSMUST00000237362.2
ENSMUST00000238170.2
CDS CCA 72 bp GGCATGTTGATGTGGGCACTCAGCAGGGGAGCACTCTaGCCTTCCCGAAGCACTAGCACCTTGATCATGTCT +
Preference number: 6 (lower is better)
Translates to: GMLMWALSRGAL*PSRSTSTLIMS
Trigger: AGACATGATCAAGGTGCTAGTGCTTCGGGAAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000237085.2
CDS CCA 72 bp CAAACTGGCCGGAAACCTCCAGGAAGACAGGGACACTaGGCAGGCTCATCTCTTTGGCTTGGTTCCAAACGT +
Preference number: 6 (lower is better)
Translates to: QTGRKPPGRQGH*AGSSLWLGSKR
Trigger: ACGTTTGGAACCAAGCCAAAGAGATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237085.2
CDS CAA 72 bp AGGGGAGCACTCTGGCCTTCCCGAAGCACTAGCACCTaGATCATGTCTGAGATGCCCTTGCTACTGAGACTC +
Preference number: 6 (lower is better)
Translates to: RGALWPSRSTST*IMSEMPLLLRL
Trigger: GAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGGTGCTAGTGCTTCGGGAAGGCCAGAGTGCTCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000237085.2
CDS CAA 90 bp CCGGAAACCTCCAGGAAGACAGGGACACTGGGCAGGCTCATCTCTTaGGCTTGGTTCCAAACGTCCTGTTCCAAAGGGTTTGGAGGTAAC +
Preference number: 6 (lower is better)
Translates to: PETSRKTGTLGRLIS*AWFQTSCSKGFGGN
Trigger: GTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAGATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237085.2
CDS CAA 72 bp GAAGACAGGGACACTGGGCAGGCTCATCTCTTTGGCTaGGTTCCAAACGTCCTGTTCCAAAGGGTTTGGAGG +
Preference number: 6 (lower is better)
Translates to: EDRDTGQAHLFG*VPNVLFQRVWR
Trigger: CCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAGATGAGCCTGCCCAGTGTCCCTGTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237085.2
CDS GCA 72 bp TGGTTCACAAACGCCTCCATTTCACTCAGCTCCAGCTaGAGAAACCTGAGTGACTGCACAGACAAAGGCACG +
Preference number: 6 (lower is better)
Translates to: WFTNASISLSSS*RNLSDCTDKGT
Trigger: CGTGCCTTTGTCTGTGCAGTCACTCAGGTTTCTGCAGCTGGAGCTGAGTGAAATGGAGGCGTTTGTGAACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS CCA 72 bp TCCTCCAGCATCTCCTTCAGGGTTAAGGGGTCAATCTaGTCCTCTTTGGCTTGGTTCCAAACGTCCTGTTCC +
Preference number: 6 (lower is better)
Translates to: SSSISFRVKGSI*SSLAWFQTSCS
Trigger: GGAACAGGACGTTTGGAACCAAGCCAAAGAGGACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS CCA 72 bp AAGACAGGGACACTGGGCAGGCTCATCTCTTTGGCTTaGTTCCAAACGTCCTGTTCCAAAGGGTTTGGAGGT +
Preference number: 6 (lower is better)
Translates to: KTGTLGRLISLA*FQTSCSKGFGG
Trigger: ACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAGATGAGCCTGCCCAGTGTCCCTGTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237085.2
CDS CAA 90 bp TCCTCCAGCATCTCCTTCAGGGTTAAGGGGTCAATCTGGTCCTCTTaGGCTTGGTTCCAAACGTCCTGTTCCAAAGGGTTTGGAGGTAAC +
Preference number: 6 (lower is better)
Translates to: SSSISFRVKGSIWSS*AWFQTSCSKGFGGN
Trigger: GTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAGGACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS GCA 72 bp GTGATGACTGTCTGGCGCTTGATAACCTTGGACTTGTaGTGGTTCACAAACGCCTCCATTTCACTCAGCTCC +
Preference number: 6 (lower is better)
Translates to: VMTVWRLITLDL*WFTNASISLSS
Trigger: GGAGCTGAGTGAAATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAGACAGTCATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS CCA 72 bp ATGACTGTCTGGCGCTTGATAACCTTGGACTTGTGCTaGTTCACAAACGCCTCCATTTCACTCAGCTCCAGC +
Preference number: 6 (lower is better)
Translates to: MTVWRLITLDLC*FTNASISLSSS
Trigger: GCTGGAGCTGAGTGAAATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAGACAGTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS CCA 72 bp CAGACAAAGGCACGTCTGCCTTTTCCCTCTTTGGCTTaGTTCCAAACGTCCTGTTCCAAAGGGTTTGGAGGT +
Preference number: 6 (lower is better)
Translates to: QTKARLPFPSLA*FQTSCSKGFGG
Trigger: ACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAGGGAAAAGGCAGACGTGCCTTTGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS CCA 72 bp CTGCACAGACAAAGGCACGTCTGCCTTTTCCCTCTTTaGCTTGGTTCCAAACGTCCTGTTCCAAAGGGTTTG +
Preference number: 6 (lower is better)
Translates to: LHRQRHVCLFPL*LGSKRPVPKGL
Trigger: CAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAGGGAAAAGGCAGACGTGCCTTTGTCTGTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS CAA 72 bp GTGGTGATGACTGTCTGGCGCTTGATAACCTTGGACTaGTGCTGGTTCACAAACGCCTCCATTTCACTCAGC +
Preference number: 6 (lower is better)
Translates to: VVMTVWRLITLD*CWFTNASISLS
Trigger: GCTGAGTGAAATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAGACAGTCATCACCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2
CDS CAA 72 bp CGAAGCACTAGCACCTTGATCATGTCTGAGATGCCCTaGCTACTGAGACTCTCCACAAAGGTTTCCAGTGGG +
Preference number: 6 (lower is better)
Translates to: RSTSTLIMSEMP*LLRLSTKVSSG
Trigger: CCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGGTGCTAGTGCTTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000237085.2
CDS CAA 72 bp ACAGACAAAGGCACGTCTGCCTTTTCCCTCTTTGGCTaGGTTCCAAACGTCCTGTTCCAAAGGGTTTGGAGG +
Preference number: 6 (lower is better)
Translates to: TDKGTSAFSLFG*VPNVLFQRVWR
Trigger: CCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAGGGAAAAGGCAGACGTGCCTTTGTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237362.2
CDS CAA 72 bp ATCTCCTTCAGGGTTAAGGGGTCAATCTGGTCCTCTTaGGCTTGGTTCCAAACGTCCTGTTCCAAAGGGTTT +
Preference number: 6 (lower is better)
Translates to: ISFRVKGSIWSS*AWFQTSCSKGF
Trigger: AAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAGGACCAGATTGACCCCTTAACCCTGAAGGAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053506.8
ENSMUST00000238170.2