Pregenerated sensors for BBOX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041660Ensembl transcript IDs: ENSMUST00000046233.9
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTGCTCTaGCATTTGAGTTCTATCACTAGGGGAGTGGCCATGCAAAAAGAT | + |
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Preference number: 1 (lower is better) Translates to: HPYGRLNRLQLHSVL*HLSSITRGVAMQKD Trigger: ATCTTTTTGCATGGCCACTCCCCTAGTGATAGAACTCAAATGTCAGAGCACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR CCA 90 bp | AAGGCTGTCCAGAGGCAAGCAGCCATCTTGTCCATTCAGGTAGGTTaGCAGTATCTTTTAAAAATTCATGAGTTGAAGACAAGGAATGAA | + |
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Preference number: 1 (lower is better) Translates to: KAVQRQAAILSIQVG*QYLLKIHELKTRNE Trigger: TTCATTCCTTGTCTTCAACTCATGAATTTTTAAAAGATACTGCCAACCTACCTGAATGGACAAGATGGCTGCTTGCCTCTGGACAGCCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR CCA 90 bp | GTCAACAAAATGAAATATGTTGGTACTATCAGAATCTCATCAAATTaGAATTCCAAAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACA | + |
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Preference number: 1 (lower is better) Translates to: VNKMKYVGTIRISSN*NSKASFLIRMGGST Trigger: TGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTTTGGAATTCCAATTTGATGAGATTCTGATAGTACCAACATATTTCATTTTGTTGAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR TCA 90 bp | GGACTAGATTTTTCTCTTCATTTGGCTTACTTGGGTTTACTGTCATaGCTTAAGGATGACAAACAATGTTGGGATTATCAAGTAAATGAG | + |
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Preference number: 1 (lower is better) Translates to: GLDFSLHLAYLGLLS*LKDDKQCWDYQVNE Trigger: CTCATTTACTTGATAATCCCAACATTGTTTGTCATCCTTAAGTCATGACAGTAAACCCAAGTAAGCCAAATGAAGAGAAAAATCTAGTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR CAA 90 bp | ACCACTGCAGACAAAGGGCCACTGGAACACTCACTTAGCAGAGGTTaGGAGATGGACCAAATAAACAAGAGTGCCAGAGGCTGTCTGCAC | + |
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Preference number: 2 (lower is better) Translates to: TTADKGPLEHSLSRG*EMDQINKSARGCLH Trigger: GTGCAGACAGCCTCTGGCACTCTTGTTTATTTGGTCCATCTCCAAACCTCTGCTAAGTGAGTGTTCCAGTGGCCCTTTGTCTGCAGTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR-3UTR CCA 90 bp | AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTAACACTGGCAGTCTGTaGGAACATTTCTCTAGTCAA | + |
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Preference number: 2 (lower is better) Translates to: KLLFSSVWEAQQITTSFCNTGSL*EHFSSQ Trigger: TTGACTAGAGAAATGTTCCCACAGACTGCCAGTGTT...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR-3UTR TCA 90 bp | AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTAGAGCTTCGAAAATATaGACACTTTTCCAAGCATGC | + |
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Preference number: 2 (lower is better) Translates to: KLLFSSVWEAQQITTSFCRASKI*TLFQAC Trigger: GCATGCTTGGAAAAGTGTTCATATTTTCGAAGCTCT...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR-3UTR GCA 90 bp | AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTCCTGATGAGAGAAGCTaGATGTTCAGTTTTAAAGAA | + |
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Preference number: 2 (lower is better) Translates to: KLLFSSVWEAQQITTSFCPDERS*MFSFKE Trigger: TTCTTTAAAACTGAACATGCAGCTTCTCTCATCAGG...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR CAA 90 bp | TGTCAACAAAATGAAATATGTTGGTACTATCAGAATCTCATCAAATaGGAATTCCAAAGCTTCTTTTCTCATCCGTATGGGAGGCTCAAC | + |
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Preference number: 2 (lower is better) Translates to: CQQNEICWYYQNLIK*EFQSFFSHPYGRLN Trigger: GTTGAGCCTCCCATACGGATGAGAAAAGAAGCTTTGGAATTCCAATTTGATGAGATTCTGATAGTACCAACATATTTCATTTTGTTGACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR CCA 72 bp | AAACAAGAGTGCCAGAGGCTGTCTGCACATGCCATGTaGAGTGCCATCATGGTCACTTGTAGCCTGGAAAAA | + |
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Preference number: 3 (lower is better) Translates to: KQECQRLSAHAM*SAIMVTCSLEK Trigger: TTTTTCCAGGCTACAAGTGACCATGATGGCACTCCACATGGCATGTGCAGACAGCCTCTGGCACTCTTGTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR TCA 72 bp | GGGAGGCTCAACAGATTACAACTTCATTCTGTGCTCTaGCATTTGAGTTCTATCACTAGGGGAGTGGCCATG | + |
|
Preference number: 3 (lower is better) Translates to: GRLNRLQLHSVL*HLSSITRGVAM Trigger: CATGGCCACTCCCCTAGTGATAGAACTCAAATGTCAGAGCACAGAATGAAGTTGTAATCTGTTGAGCCTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR TCA 72 bp | TGCTCTGGGTTAGTGATACAGAGATACACATTTGTTTaGTGGTGGGGCCACAGGTACAGAAGAGTCAATAAA | + |
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Preference number: 3 (lower is better) Translates to: CSGLVIQRYTFV*WWGHRYRRVNK Trigger: TTTATTGACTCTTCTGTACCTGTGGCCCCACCATCAAACAAATGTGTATCTCTGTATCACTAACCCAGAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR TCA 72 bp | TCAACAGATTACAACTTCATTCTGTGCTCTGACATTTaGGTTCTATCACTAGGGGAGTGGCCATGCAAAAAG | + |
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Preference number: 3 (lower is better) Translates to: STDYNFILCSDI*VLSLGEWPCKK Trigger: CTTTTTGCATGGCCACTCCCCTAGTGATAGAACTCAAATGTCAGAGCACAGAATGAAGTTGTAATCTGTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR CCA 72 bp | CAAATTGGAATTCCAAAGCTTCTTTTCTCATCCGTATaGGAGGCTCAACAGATTACAACTTCATTCTGTGCT | + |
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Preference number: 3 (lower is better) Translates to: QIGIPKLLFSSV*EAQQITTSFCA Trigger: AGCACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTTTGGAATTCCAATTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR-3UTR CAA 90 bp | AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTGATTTTTCTCTTCATTaGGCTTACTTGGGTTTACTG | + |
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Preference number: 3 (lower is better) Translates to: KLLFSSVWEAQQITTSFCDFSLH*AYLGLL Trigger: CAGTAAACCCAAGTAAGCCAAATGAAGAGAAAAATC...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR TCA 72 bp | TTTTCTCTTCATTTGGCTTACTTGGGTTTACTGTCATaGCTTAAGGATGACAAACAATGTTGGGATTATCAA | + |
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Preference number: 3 (lower is better) Translates to: FSLHLAYLGLLS*LKDDKQCWDYQ Trigger: TTGATAATCCCAACATTGTTTGTCATCCTTAAGTCATGACAGTAAACCCAAGTAAGCCAAATGAAGAGAAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR GCA 72 bp | GATCATACACAGGATAAAGTTGGTTTTATTTGGGGATaGCAGGATGCTTTCAACATATACAAGTTGATAAAT | + |
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Preference number: 3 (lower is better) Translates to: DHTQDKVGFIWG*QDAFNIYKLIN Trigger: ATTTATCAACTTGTATATGTTGAAAGCATCCTGGCATCCCCAAATAAAACCAACTTTATCCTGTGTATGATC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR CCA 72 bp | ATGAAATATGTTGGTACTATCAGAATCTCATCAAATTaGAATTCCAAAGCTTCTTTTCTCATCCGTATGGGA | + |
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Preference number: 3 (lower is better) Translates to: MKYVGTIRISSN*NSKASFLIRMG Trigger: TCCCATACGGATGAGAAAAGAAGCTTTGGAATTCCAATTTGATGAGATTCTGATAGTACCAACATATTTCAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR CCA 90 bp | GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTAAGCTGAACCCCAGGTaGATGGTGGAGGGCTGGGTA | + |
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Preference number: 4 (lower is better) Translates to: VLSLGEWPCKKMRPAGKAKLNPR*MVEGWV Trigger: TACCCAGCCCTCCACCATCCACCTGGGGTTCAGCTT...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR CCA 90 bp | GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTTACGCTCCTTCCAGATaGCGGGATATCTCAGTTCCC | + |
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Preference number: 4 (lower is better) Translates to: VLSLGEWPCKKMRPAGKAYAPSR*RDISVP Trigger: GGGAACTGAGATATCCCGCCATCTGGAAGGAGCGTA...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR TCA 90 bp | GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTCAGAATACGAAGCCTTaGCATCACTACATCCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: VLSLGEWPCKKMRPAGKAQNTKP*HHYIPV Trigger: GACTGGGATGTAGTGATGTCAAGGCTTCGTATTCTG...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR GCA 90 bp | GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTGACTCTGCCCCATCGTaGCAAAAGATCTGCATCAAA | + |
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Preference number: 4 (lower is better) Translates to: VLSLGEWPCKKMRPAGKADSAPS*QKICIK Trigger: TTTGATGCAGATCTTTTGGCACGATGGGGCAGAGTC...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR CAA 72 bp | CCAGCTGGTAAGGCTGTCCAGAGGCAAGCAGCCATCTaGTCCATTCAGGTAGGTTGGCAGTATCTTTTAAAA | + |
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Preference number: 4 (lower is better) Translates to: PAGKAVQRQAAI*SIQVGWQYLLK Trigger: TTTTAAAAGATACTGCCAACCTACCTGAATGGACAAGATGGCTGCTTGCCTCTGGACAGCCTTACCAGCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR TCA 90 bp | GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTTGTGTCCATAAAATGTaGGGTACAGGAAGCCAATTC | + |
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Preference number: 4 (lower is better) Translates to: VLSLGEWPCKKMRPAGKACVHKM*GTGSQF Trigger: GAATTGGCTTCCTGTACCTCACATTTTATGGACACA...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR CCA 90 bp | AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTTTCAGAGTTGGCAGCTaGAGTTCTGAGCCCCAGTAC | + |
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Preference number: 4 (lower is better) Translates to: KLLFSSVWEAQQITTSFCFRVGS*SSEPQY Trigger: GTACTGGGGCTCAGAACTCCAGCTGCCAACTCTGAA...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR TCA 90 bp | CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATATACAATGCAGAAGCTaGACCCCAGGTGGATGGTGG | + |
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Preference number: 4 (lower is better) Translates to: HRRDALRLTLTMTLNKRYIQCRS*TPGGWW Trigger: CCACCATCCACCTGGGGTTCAGCTTCTGCATTGTAT...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR TCA 90 bp | GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTATTCTTTGCTGTTCATaGGGTCAACAAACTCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: VLSLGEWPCKKMRPAGKAILCCS*GQQTLS Trigger: TGAAAGAGTTTGTTGACCTCATGAACAGCAAAGAAT...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR TCA 90 bp | GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTCACCTGGATTCATCTTaGAGGTATACTTGTATTCTT | + |
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Preference number: 4 (lower is better) Translates to: VLSLGEWPCKKMRPAGKAHLDSS*RYTCIL Trigger: AAGAATACAAGTATACCTTCAAGATGAATCCAGGTG...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR GCA 90 bp | CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATTGGGTAGAGGGACTCTaGCCCATCGTGCCAAAAGAT | + |
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Preference number: 4 (lower is better) Translates to: HRRDALRLTLTMTLNKRYWVEGL*PIVPKD Trigger: ATCTTTTGGCACGATGGGGCAGAGTCCCTCTACCCA...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR CCA 90 bp | GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTGGTAATCACATCACCTaGATTCATCTTGAAGGTATA | + |
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Preference number: 4 (lower is better) Translates to: VLSLGEWPCKKMRPAGKAGNHIT*IHLEGI Trigger: TATACCTTCAAGATGAATCCAGGTGATGTGATTACC...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR TCA 90 bp | AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTAAGATCTGCATCAAATaGGCCCCATCCACTGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: KLLFSSVWEAQQITTSFCKICIK*APSTAS Trigger: AGAAGCAGTGGATGGGGCTCATTTGATGCAGATCTT...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR TCA 90 bp | AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTAGAATATGGAAAGCCTaGGGGTTCTTCTCCTTGAGC | + |
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Preference number: 4 (lower is better) Translates to: KLLFSSVWEAQQITTSFCRIWKA*GFFSLS Trigger: GCTCAAGGAGAAGAACCCTCAGGCTTTCCATATTCT...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR GCA 90 bp | AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTGCATCAATCTTGTCCTaGACTTGCCAAGTGTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: KLLFSSVWEAQQITTSFCASILS*TCQVCP Trigger: TGGACACACTTGGCAAGTGCAGGACAAGATTGATGC...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR CCA 90 bp | GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTAGCCATTTGTATGCATaGTCATCATCATTTAACACA | + |
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Preference number: 4 (lower is better) Translates to: VLSLGEWPCKKMRPAGKASHLYA*SSSFNT Trigger: TGTGTTAAATGATGATGACCATGCATACAAATGGCT...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR TCA 90 bp | CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATAGTCAGTGTGGAAGCTaGGCTTCCCAGTTGTATAAG | + |
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Preference number: 4 (lower is better) Translates to: HRRDALRLTLTMTLNKRYSQCGS*ASQLYK Trigger: CTTATACAACTGGGAAGCTCAGCTTCCACACTGACT...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR CCA 90 bp | AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTTTCTCCTTGAGCTTTTaGCACACGTTAAACCCATCC | + |
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Preference number: 4 (lower is better) Translates to: KLLFSSVWEAQQITTSFCFSLSF*HTLNPS Trigger: GGATGGGTTTAACGTGTGCCAAAAGCTCAAGGAGAA...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR TCA 90 bp | CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATGGTCATTGGGCCATGTaGTATAAACCTTTTTCCGGT | + |
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Preference number: 4 (lower is better) Translates to: HRRDALRLTLTMTLNKRYGHWAM*YKPFSG Trigger: ACCGGAAAAAGGTTTATATCACATGGCCCAATGACC...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR TCA 90 bp | AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTTCTGAGCCCCAGTACTaGCATTCTGGTAAAAACAAT | + |
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Preference number: 4 (lower is better) Translates to: KLLFSSVWEAQQITTSFCSEPQY*HSGKNN Trigger: ATTGTTTTTACCAGAATGTCAGTACTGGGGCTCAGA...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR GCA 90 bp | CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATGACTGTATCTCTGGTTaGATTGTTGAAGTTGACGCG | + |
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Preference number: 4 (lower is better) Translates to: HRRDALRLTLTMTLNKRYDCISG*IVEVDA Trigger: CGCGTCAACTTCAACAATGCAACCAGAGATACAGTC...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR CCA 90 bp | CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATAAAAACAATTCTCCTTaGAGCCTTGCTCTGGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: HRRDALRLTLTMTLNKRYKNNSP*SLALAC Trigger: ACAGGCCAGAGCAAGGCTCCAAGGAGAATTGTTTTT...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR CAA 72 bp | CAGATTTTAGGCTGTGTATTTACCATGTTGGGGCACTaGAATGACATTGAAATCACTTGTGATAGCGATCAG | + |
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Preference number: 4 (lower is better) Translates to: QILGCVFTMLGH*NDIEITCDSDQ Trigger: CTGATCGCTATCACAAGTGATTTCAATGTCATTCAAGTGCCCCAACATGGTAAATACACAGCCTAAAATCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR CCA 90 bp | CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATTATAAGCCACATTGTTaGCATCAATCTTGTCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: HRRDALRLTLTMTLNKRYYKPHC*HQSCPA Trigger: TGCAGGACAAGATTGATGCCAACAATGTGGCTTATA...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR CAA 72 bp | AGACAAATTAGAGAAGGAAGCCATGCTAACAAACTCTaGGTAAGCCAGTATTATCCTGATATCAAAACCAGA | + |
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Preference number: 4 (lower is better) Translates to: RQIREGSHANKL*VSQYYPDIKTR Trigger: TCTGGTTTTGATATCAGGATAATACTGGCTTACCAAGAGTTTGTTAGCATGGCTTCCTTCTCTAATTTGTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR CAA 72 bp | AATTGCTTTCAGATTTTAGGCTGTGTATTTACCATGTaGGGGCACTTGAATGACATTGAAATCACTTGTGAT | + |
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Preference number: 4 (lower is better) Translates to: NCFQILGCVFTM*GHLNDIEITCD Trigger: ATCACAAGTGATTTCAATGTCATTCAAGTGCCCCAACATGGTAAATACACAGCCTAAAATCTGAAAGCAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| 3UTR CAA 72 bp | AATGAAATATGTTGGTACTATCAGAATCTCATCAAATaGGAATTCCAAAGCTTCTTTTCTCATCCGTATGGG | + |
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Preference number: 4 (lower is better) Translates to: NEICWYYQNLIK*EFQSFFSHPYG Trigger: CCCATACGGATGAGAAAAGAAGCTTTGGAATTCCAATTTGATGAGATTCTGATAGTACCAACATATTTCATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CCA 90 bp | CTTGATACAATGCAGAAGCTGAACCCCAGGTGGATGGTGGAGGGCTaGGTAGTCAGTGTGGAAGCTGAGCTTCCCAGTTGTATAAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: LDTMQKLNPRWMVEG*VVSVEAELPSCISH Trigger: GTGGCTTATACAACTGGGAAGCTCAGCTTCCACACTGACTACCCAGCCCTCCACCATCCACCTGGGGTTCAGCTTCTGCATTGTATCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS TCA 90 bp | GAACCCCAGGTGGATGGTGGAGGGCTGGGTAGTCAGTGTGGAAGCTaGGCTTCCCAGTTGTATAAGCCACATTGTTGGCATCAATCTTGT | + |
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Preference number: 5 (lower is better) Translates to: EPQVDGGGLGSQCGS*ASQLYKPHCWHQSC Trigger: ACAAGATTGATGCCAACAATGTGGCTTATACAACTGGGAAGCTCAGCTTCCACACTGACTACCCAGCCCTCCACCATCCACCTGGGGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR CAA 90 bp | GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTCCTTGCTCTGGCCTGTaGAGAAAAGCATCTTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: VLSLGEWPCKKMRPAGKAPCSGL*RKASFL Trigger: AAGAAAAGATGCTTTTCTCAACAGGCCAGAGCAAGG...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS GCA 90 bp | GCCAATTCTTTTCCCAAGTTTTATGATCTCACCACGTTTGTCAGCTaGTCCGGTGAGTCTCACAATGCCTACTTTCTTGAGACTGGAAAG | + |
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Preference number: 5 (lower is better) Translates to: ANSFPKFYDLTTFVS*SGESHNAYFLETGK Trigger: CTTTCCAGTCTCAAGAAAGTAGGCATTGTGAGACTCACCGGAGCAGCTGACAAACGTGGTGAGATCATAAAACTTGGGAAAAGAATTGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS GCA 90 bp | AGGCTGAACTCTTTCGATGGGGACATCAAAGACTGTATCTCTGGTTaGATTGTTGAAGTTGACGCGAACCACTTGGCCTTTATCATCCAA | + |
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Preference number: 5 (lower is better) Translates to: RLNSFDGDIKDCISG*IVEVDANHLAFIIQ Trigger: TTGGATGATAAAGGCCAAGTGGTTCGCGTCAACTTCAACAATGCAACCAGAGATACAGTCTTTGATGTCCCCATCGAAAGAGTTCAGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR CAA 90 bp | GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTTCCAACTCTATAATCTaGTGTTTAGATTGCACAGAG | + |
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Preference number: 5 (lower is better) Translates to: VLSLGEWPCKKMRPAGKASNSII*CLDCTE Trigger: CTCTGTGCAATCTAAACACAAGATTATAGAGTTGGA...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR CAA 90 bp | AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTTTGTTGGCATCAATCTaGTCCTGCACTTGCCAAGTG | + |
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Preference number: 5 (lower is better) Translates to: KLLFSSVWEAQQITTSFCLLASI*SCTCQV Trigger: CACTTGGCAAGTGCAGGACAAGATTGATGCCAACAA...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR CAA 90 bp | CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATCTTCTCCTTGAGCTTTaGGCACACGTTAAACCCATC | + |
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Preference number: 5 (lower is better) Translates to: HRRDALRLTLTMTLNKRYLLLEL*AHVKPI Trigger: GATGGGTTTAACGTGTGCCAAAAGCTCAAGGAGAAG...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR CAA 90 bp | AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTTCAGAATACGAAGCCTaGACATCACTACATCCCAGT | + |
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Preference number: 5 (lower is better) Translates to: KLLFSSVWEAQQITTSFCSEYEA*TSLHPS Trigger: ACTGGGATGTAGTGATGTCAAGGCTTCGTATTCTGA...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CCA 90 bp | CTCACAATGCCTACTTTCTTGAGACTGGAAAGCCATTTGTATGCATaGTCATCATCATTTAACACATCTTCAAAATTCAGAGTTGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LTMPTFLRLESHLYA*SSSFNTSSKFRVGS Trigger: GCTGCCAACTCTGAATTTTGAAGATGTGTTAAATGATGATGACCATGCATACAAATGGCTTTCCAGTCTCAAGAAAGTAGGCATTGTGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CCA 90 bp | AAGACTGTATCTCTGGTTGCATTGTTGAAGTTGACGCGAACCACTTaGCCTTTATCATCCAACTCTATAATCTTGTGTTTAGATTGCACA | + |
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Preference number: 5 (lower is better) Translates to: KTVSLVALLKLTRTT*PLSSNSIILCLDCT Trigger: TGTGCAATCTAAACACAAGATTATAGAGTTGGATGATAAAGGCCAAGTGGTTCGCGTCAACTTCAACAATGCAACCAGAGATACAGTCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS-3UTR CAA 90 bp | CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATTCACCTGGATTCATCTaGAAGGTATACTTGTATTCT | + |
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Preference number: 5 (lower is better) Translates to: HRRDALRLTLTMTLNKRYSPGFI*KVYLYS Trigger: AGAATACAAGTATACCTTCAAGATGAATCCAGGTGA...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CCA 72 bp | ATGCAGAAGCTGAACCCCAGGTGGATGGTGGAGGGCTaGGTAGTCAGTGTGGAAGCTGAGCTTCCCAGTTGT | + |
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Preference number: 6 (lower is better) Translates to: MQKLNPRWMVEG*VVSVEAELPSC Trigger: ACAACTGGGAAGCTCAGCTTCCACACTGACTACCCAGCCCTCCACCATCCACCTGGGGTTCAGCTTCTGCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS TCA 72 bp | GTGGATGGTGGAGGGCTGGGTAGTCAGTGTGGAAGCTaGGCTTCCCAGTTGTATAAGCCACATTGTTGGCAT | + |
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Preference number: 6 (lower is better) Translates to: VDGGGLGSQCGS*ASQLYKPHCWH Trigger: ATGCCAACAATGTGGCTTATACAACTGGGAAGCTCAGCTTCCACACTGACTACCCAGCCCTCCACCATCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS TCA 72 bp | CCCATTCGTGACTCTCTGTCTCAGAATACGAAGCCTTaGCATCACTACATCCCAGTCAGCATACGCTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: PIRDSLSQNTKP*HHYIPVSIRSF Trigger: GAAGGAGCGTATGCTGACTGGGATGTAGTGATGTCAAGGCTTCGTATTCTGAGACAGAGAGTCACGAATGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 90 bp | CGAGGAGAGAATATGGAAAGCCTGAGGGTTCTTCTCCTTGAGCTTTaGGCACACGTTAAACCCATCCACAATTTCAGAGTCACCTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: RGENMESLRVLLLEL*AHVKPIHNFRVTSC Trigger: ACAGGAGGTGACTCTGAAATTGTGGATGGGTTTAACGTGTGCCAAAAGCTCAAGGAGAAGAACCCTCAGGCTTTCCATATTCTCTCCTCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 72 bp | TCAGCTGCTCCGGTGAGTCTCACAATGCCTACTTTCTaGAGACTGGAAAGCCATTTGTATGCATGGTCATCA | + |
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Preference number: 6 (lower is better) Translates to: SAAPVSLTMPTF*RLESHLYAWSS Trigger: TGATGACCATGCATACAAATGGCTTTCCAGTCTCAAGAAAGTAGGCATTGTGAGACTCACCGGAGCAGCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 90 bp | CCACGTTTGTCAGCTGCTCCGGTGAGTCTCACAATGCCTACTTTCTaGAGACTGGAAAGCCATTTGTATGCATGGTCATCATCATTTAAC | + |
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Preference number: 6 (lower is better) Translates to: PRLSAAPVSLTMPTF*RLESHLYAWSSSFN Trigger: GTTAAATGATGATGACCATGCATACAAATGGCTTTCCAGTCTCAAGAAAGTAGGCATTGTGAGACTCACCGGAGCAGCTGACAAACGTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS GCA 72 bp | TTTCCCAAGTTTTATGATCTCACCACGTTTGTCAGCTaGTCCGGTGAGTCTCACAATGCCTACTTTCTTGAG | + |
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Preference number: 6 (lower is better) Translates to: FPKFYDLTTFVS*SGESHNAYFLE Trigger: CTCAAGAAAGTAGGCATTGTGAGACTCACCGGAGCAGCTGACAAACGTGGTGAGATCATAAAACTTGGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS GCA 72 bp | TCTTTCGATGGGGACATCAAAGACTGTATCTCTGGTTaGATTGTTGAAGTTGACGCGAACCACTTGGCCTTT | + |
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Preference number: 6 (lower is better) Translates to: SFDGDIKDCISG*IVEVDANHLAF Trigger: AAAGGCCAAGTGGTTCGCGTCAACTTCAACAATGCAACCAGAGATACAGTCTTTGATGTCCCCATCGAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CCA 72 bp | CTTTCAGAGCAGCGTAGAAAGGCTGAACTCTTTCGATaGGGACATCAAAGACTGTATCTCTGGTTGCATTGT | + |
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Preference number: 6 (lower is better) Translates to: LSEQRRKAELFR*GHQRLYLWLHC Trigger: ACAATGCAACCAGAGATACAGTCTTTGATGTCCCCATCGAAAGAGTTCAGCCTTTCTACGCTGCTCTGAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 72 bp | CCAATTCTTTTCCCAAGTTTTATGATCTCACCACGTTaGTCAGCTGCTCCGGTGAGTCTCACAATGCCTACT | + |
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Preference number: 6 (lower is better) Translates to: PILFPSFMISPR*SAAPVSLTMPT Trigger: AGTAGGCATTGTGAGACTCACCGGAGCAGCTGACAAACGTGGTGAGATCATAAAACTTGGGAAAAGAATTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 90 bp | TACAGGAAGCCAATTCTTTTCCCAAGTTTTATGATCTCACCACGTTaGTCAGCTGCTCCGGTGAGTCTCACAATGCCTACTTTCTTGAGA | + |
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Preference number: 6 (lower is better) Translates to: YRKPILFPSFMISPR*SAAPVSLTMPTFLR Trigger: TCTCAAGAAAGTAGGCATTGTGAGACTCACCGGAGCAGCTGACAAACGTGGTGAGATCATAAAACTTGGGAAAAGAATTGGCTTCCTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 90 bp | CCCAGTTGTATAAGCCACATTGTTGGCATCAATCTTGTCCTGCACTaGCCAAGTGTGTCCATAAAATGTGAGGTACAGGAAGCCAATTCT | + |
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Preference number: 6 (lower is better) Translates to: PSCISHIVGINLVLH*PSVSIKCEVQEANS Trigger: AGAATTGGCTTCCTGTACCTCACATTTTATGGACACACTTGGCAAGTGCAGGACAAGATTGATGCCAACAATGTGGCTTATACAACTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 72 bp | AATATGGAAAGCCTGAGGGTTCTTCTCCTTGAGCTTTaGGCACACGTTAAACCCATCCACAATTTCAGAGTC | + |
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Preference number: 6 (lower is better) Translates to: NMESLRVLLLEL*AHVKPIHNFRV Trigger: GACTCTGAAATTGTGGATGGGTTTAACGTGTGCCAAAAGCTCAAGGAGAAGAACCCTCAGGCTTTCCATATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 90 bp | TCGATGGGGACATCAAAGACTGTATCTCTGGTTGCATTGTTGAAGTaGACGCGAACCACTTGGCCTTTATCATCCAACTCTATAATCTTG | + |
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Preference number: 6 (lower is better) Translates to: SMGTSKTVSLVALLK*TRTTWPLSSNSIIL Trigger: CAAGATTATAGAGTTGGATGATAAAGGCCAAGTGGTTCGCGTCAACTTCAACAATGCAACCAGAGATACAGTCTTTGATGTCCCCATCGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 72 bp | ATAAGCCACATTGTTGGCATCAATCTTGTCCTGCACTaGCCAAGTGTGTCCATAAAATGTGAGGTACAGGAA | + |
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Preference number: 6 (lower is better) Translates to: ISHIVGINLVLH*PSVSIKCEVQE Trigger: TTCCTGTACCTCACATTTTATGGACACACTTGGCAAGTGCAGGACAAGATTGATGCCAACAATGTGGCTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 72 bp | ACATCAAAGACTGTATCTCTGGTTGCATTGTTGAAGTaGACGCGAACCACTTGGCCTTTATCATCCAACTCT | + |
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Preference number: 6 (lower is better) Translates to: TSKTVSLVALLK*TRTTWPLSSNS Trigger: AGAGTTGGATGATAAAGGCCAAGTGGTTCGCGTCAACTTCAACAATGCAACCAGAGATACAGTCTTTGATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 90 bp | CCGGTGAGTCTCACAATGCCTACTTTCTTGAGACTGGAAAGCCATTaGTATGCATGGTCATCATCATTTAACACATCTTCAAAATTCAGA | + |
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Preference number: 6 (lower is better) Translates to: PVSLTMPTFLRLESH*YAWSSSFNTSSKFR Trigger: TCTGAATTTTGAAGATGTGTTAAATGATGATGACCATGCATACAAATGGCTTTCCAGTCTCAAGAAAGTAGGCATTGTGAGACTCACCGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 90 bp | AAAGACTGTATCTCTGGTTGCATTGTTGAAGTTGACGCGAACCACTaGGCCTTTATCATCCAACTCTATAATCTTGTGTTTAGATTGCAC | + |
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Preference number: 6 (lower is better) Translates to: KDCISGCIVEVDANH*AFIIQLYNLVFRLH Trigger: GTGCAATCTAAACACAAGATTATAGAGTTGGATGATAAAGGCCAAGTGGTTCGCGTCAACTTCAACAATGCAACCAGAGATACAGTCTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 72 bp | CAGTTGTCGAAGGTAATCACATCACCTGGATTCATCTaGAAGGTATACTTGTATTCTTTGCTGTTCATGAGG | + |
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Preference number: 6 (lower is better) Translates to: QLSKVITSPGFI*KVYLYSLLFMR Trigger: CCTCATGAACAGCAAAGAATACAAGTATACCTTCAAGATGAATCCAGGTGATGTGATTACCTTCGACAACTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 90 bp | TTGTCGAAGGTAATCACATCACCTGGATTCATCTTGAAGGTATACTaGTATTCTTTGCTGTTCATGAGGTCAACAAACTCTTTCAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: LSKVITSPGFILKVY*YSLLFMRSTNSFRA Trigger: TGCTCTGAAAGAGTTTGTTGACCTCATGAACAGCAAAGAATACAAGTATACCTTCAAGATGAATCCAGGTGATGTGATTACCTTCGACAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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| CDS CAA 72 bp | GTAATCACATCACCTGGATTCATCTTGAAGGTATACTaGTATTCTTTGCTGTTCATGAGGTCAACAAACTCT | + |
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Preference number: 6 (lower is better) Translates to: VITSPGFILKVY*YSLLFMRSTNS Trigger: AGAGTTTGTTGACCTCATGAACAGCAAAGAATACAAGTATACCTTCAAGATGAATCCAGGTGATGTGATTAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046233.9 |
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