RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BBOX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041660

Ensembl transcript IDs: ENSMUST00000046233.9

Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTGCTCTaGCATTTGAGTTCTATCACTAGGGGAGTGGCCATGCAAAAAGAT +
Preference number: 1 (lower is better)
Translates to: HPYGRLNRLQLHSVL*HLSSITRGVAMQKD
Trigger: ATCTTTTTGCATGGCCACTCCCCTAGTGATAGAACTCAAATGTCAGAGCACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR CCA 90 bp AAGGCTGTCCAGAGGCAAGCAGCCATCTTGTCCATTCAGGTAGGTTaGCAGTATCTTTTAAAAATTCATGAGTTGAAGACAAGGAATGAA +
Preference number: 1 (lower is better)
Translates to: KAVQRQAAILSIQVG*QYLLKIHELKTRNE
Trigger: TTCATTCCTTGTCTTCAACTCATGAATTTTTAAAAGATACTGCCAACCTACCTGAATGGACAAGATGGCTGCTTGCCTCTGGACAGCCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR CCA 90 bp GTCAACAAAATGAAATATGTTGGTACTATCAGAATCTCATCAAATTaGAATTCCAAAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACA +
Preference number: 1 (lower is better)
Translates to: VNKMKYVGTIRISSN*NSKASFLIRMGGST
Trigger: TGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTTTGGAATTCCAATTTGATGAGATTCTGATAGTACCAACATATTTCATTTTGTTGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR TCA 90 bp GGACTAGATTTTTCTCTTCATTTGGCTTACTTGGGTTTACTGTCATaGCTTAAGGATGACAAACAATGTTGGGATTATCAAGTAAATGAG +
Preference number: 1 (lower is better)
Translates to: GLDFSLHLAYLGLLS*LKDDKQCWDYQVNE
Trigger: CTCATTTACTTGATAATCCCAACATTGTTTGTCATCCTTAAGTCATGACAGTAAACCCAAGTAAGCCAAATGAAGAGAAAAATCTAGTCC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR CAA 90 bp ACCACTGCAGACAAAGGGCCACTGGAACACTCACTTAGCAGAGGTTaGGAGATGGACCAAATAAACAAGAGTGCCAGAGGCTGTCTGCAC +
Preference number: 2 (lower is better)
Translates to: TTADKGPLEHSLSRG*EMDQINKSARGCLH
Trigger: GTGCAGACAGCCTCTGGCACTCTTGTTTATTTGGTCCATCTCCAAACCTCTGCTAAGTGAGTGTTCCAGTGGCCCTTTGTCTGCAGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR-3UTR CCA 90 bp AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTAACACTGGCAGTCTGTaGGAACATTTCTCTAGTCAA +
Preference number: 2 (lower is better)
Translates to: KLLFSSVWEAQQITTSFCNTGSL*EHFSSQ
Trigger: TTGACTAGAGAAATGTTCCCACAGACTGCCAGTGTT...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR-3UTR TCA 90 bp AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTAGAGCTTCGAAAATATaGACACTTTTCCAAGCATGC +
Preference number: 2 (lower is better)
Translates to: KLLFSSVWEAQQITTSFCRASKI*TLFQAC
Trigger: GCATGCTTGGAAAAGTGTTCATATTTTCGAAGCTCT...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR-3UTR GCA 90 bp AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTCCTGATGAGAGAAGCTaGATGTTCAGTTTTAAAGAA +
Preference number: 2 (lower is better)
Translates to: KLLFSSVWEAQQITTSFCPDERS*MFSFKE
Trigger: TTCTTTAAAACTGAACATGCAGCTTCTCTCATCAGG...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR CAA 90 bp TGTCAACAAAATGAAATATGTTGGTACTATCAGAATCTCATCAAATaGGAATTCCAAAGCTTCTTTTCTCATCCGTATGGGAGGCTCAAC +
Preference number: 2 (lower is better)
Translates to: CQQNEICWYYQNLIK*EFQSFFSHPYGRLN
Trigger: GTTGAGCCTCCCATACGGATGAGAAAAGAAGCTTTGGAATTCCAATTTGATGAGATTCTGATAGTACCAACATATTTCATTTTGTTGACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR CCA 72 bp AAACAAGAGTGCCAGAGGCTGTCTGCACATGCCATGTaGAGTGCCATCATGGTCACTTGTAGCCTGGAAAAA +
Preference number: 3 (lower is better)
Translates to: KQECQRLSAHAM*SAIMVTCSLEK
Trigger: TTTTTCCAGGCTACAAGTGACCATGATGGCACTCCACATGGCATGTGCAGACAGCCTCTGGCACTCTTGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR TCA 72 bp GGGAGGCTCAACAGATTACAACTTCATTCTGTGCTCTaGCATTTGAGTTCTATCACTAGGGGAGTGGCCATG +
Preference number: 3 (lower is better)
Translates to: GRLNRLQLHSVL*HLSSITRGVAM
Trigger: CATGGCCACTCCCCTAGTGATAGAACTCAAATGTCAGAGCACAGAATGAAGTTGTAATCTGTTGAGCCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR TCA 72 bp TGCTCTGGGTTAGTGATACAGAGATACACATTTGTTTaGTGGTGGGGCCACAGGTACAGAAGAGTCAATAAA +
Preference number: 3 (lower is better)
Translates to: CSGLVIQRYTFV*WWGHRYRRVNK
Trigger: TTTATTGACTCTTCTGTACCTGTGGCCCCACCATCAAACAAATGTGTATCTCTGTATCACTAACCCAGAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR TCA 72 bp TCAACAGATTACAACTTCATTCTGTGCTCTGACATTTaGGTTCTATCACTAGGGGAGTGGCCATGCAAAAAG +
Preference number: 3 (lower is better)
Translates to: STDYNFILCSDI*VLSLGEWPCKK
Trigger: CTTTTTGCATGGCCACTCCCCTAGTGATAGAACTCAAATGTCAGAGCACAGAATGAAGTTGTAATCTGTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR CCA 72 bp CAAATTGGAATTCCAAAGCTTCTTTTCTCATCCGTATaGGAGGCTCAACAGATTACAACTTCATTCTGTGCT +
Preference number: 3 (lower is better)
Translates to: QIGIPKLLFSSV*EAQQITTSFCA
Trigger: AGCACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTTTGGAATTCCAATTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR-3UTR CAA 90 bp AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTGATTTTTCTCTTCATTaGGCTTACTTGGGTTTACTG +
Preference number: 3 (lower is better)
Translates to: KLLFSSVWEAQQITTSFCDFSLH*AYLGLL
Trigger: CAGTAAACCCAAGTAAGCCAAATGAAGAGAAAAATC...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR TCA 72 bp TTTTCTCTTCATTTGGCTTACTTGGGTTTACTGTCATaGCTTAAGGATGACAAACAATGTTGGGATTATCAA +
Preference number: 3 (lower is better)
Translates to: FSLHLAYLGLLS*LKDDKQCWDYQ
Trigger: TTGATAATCCCAACATTGTTTGTCATCCTTAAGTCATGACAGTAAACCCAAGTAAGCCAAATGAAGAGAAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR GCA 72 bp GATCATACACAGGATAAAGTTGGTTTTATTTGGGGATaGCAGGATGCTTTCAACATATACAAGTTGATAAAT +
Preference number: 3 (lower is better)
Translates to: DHTQDKVGFIWG*QDAFNIYKLIN
Trigger: ATTTATCAACTTGTATATGTTGAAAGCATCCTGGCATCCCCAAATAAAACCAACTTTATCCTGTGTATGATC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR CCA 72 bp ATGAAATATGTTGGTACTATCAGAATCTCATCAAATTaGAATTCCAAAGCTTCTTTTCTCATCCGTATGGGA +
Preference number: 3 (lower is better)
Translates to: MKYVGTIRISSN*NSKASFLIRMG
Trigger: TCCCATACGGATGAGAAAAGAAGCTTTGGAATTCCAATTTGATGAGATTCTGATAGTACCAACATATTTCAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR CCA 90 bp GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTAAGCTGAACCCCAGGTaGATGGTGGAGGGCTGGGTA +
Preference number: 4 (lower is better)
Translates to: VLSLGEWPCKKMRPAGKAKLNPR*MVEGWV
Trigger: TACCCAGCCCTCCACCATCCACCTGGGGTTCAGCTT...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR CCA 90 bp GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTTACGCTCCTTCCAGATaGCGGGATATCTCAGTTCCC +
Preference number: 4 (lower is better)
Translates to: VLSLGEWPCKKMRPAGKAYAPSR*RDISVP
Trigger: GGGAACTGAGATATCCCGCCATCTGGAAGGAGCGTA...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR TCA 90 bp GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTCAGAATACGAAGCCTTaGCATCACTACATCCCAGTC +
Preference number: 4 (lower is better)
Translates to: VLSLGEWPCKKMRPAGKAQNTKP*HHYIPV
Trigger: GACTGGGATGTAGTGATGTCAAGGCTTCGTATTCTG...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR GCA 90 bp GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTGACTCTGCCCCATCGTaGCAAAAGATCTGCATCAAA +
Preference number: 4 (lower is better)
Translates to: VLSLGEWPCKKMRPAGKADSAPS*QKICIK
Trigger: TTTGATGCAGATCTTTTGGCACGATGGGGCAGAGTC...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR CAA 72 bp CCAGCTGGTAAGGCTGTCCAGAGGCAAGCAGCCATCTaGTCCATTCAGGTAGGTTGGCAGTATCTTTTAAAA +
Preference number: 4 (lower is better)
Translates to: PAGKAVQRQAAI*SIQVGWQYLLK
Trigger: TTTTAAAAGATACTGCCAACCTACCTGAATGGACAAGATGGCTGCTTGCCTCTGGACAGCCTTACCAGCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR TCA 90 bp GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTTGTGTCCATAAAATGTaGGGTACAGGAAGCCAATTC +
Preference number: 4 (lower is better)
Translates to: VLSLGEWPCKKMRPAGKACVHKM*GTGSQF
Trigger: GAATTGGCTTCCTGTACCTCACATTTTATGGACACA...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR CCA 90 bp AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTTTCAGAGTTGGCAGCTaGAGTTCTGAGCCCCAGTAC +
Preference number: 4 (lower is better)
Translates to: KLLFSSVWEAQQITTSFCFRVGS*SSEPQY
Trigger: GTACTGGGGCTCAGAACTCCAGCTGCCAACTCTGAA...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR TCA 90 bp CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATATACAATGCAGAAGCTaGACCCCAGGTGGATGGTGG +
Preference number: 4 (lower is better)
Translates to: HRRDALRLTLTMTLNKRYIQCRS*TPGGWW
Trigger: CCACCATCCACCTGGGGTTCAGCTTCTGCATTGTAT...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR TCA 90 bp GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTATTCTTTGCTGTTCATaGGGTCAACAAACTCTTTCA +
Preference number: 4 (lower is better)
Translates to: VLSLGEWPCKKMRPAGKAILCCS*GQQTLS
Trigger: TGAAAGAGTTTGTTGACCTCATGAACAGCAAAGAAT...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR TCA 90 bp GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTCACCTGGATTCATCTTaGAGGTATACTTGTATTCTT +
Preference number: 4 (lower is better)
Translates to: VLSLGEWPCKKMRPAGKAHLDSS*RYTCIL
Trigger: AAGAATACAAGTATACCTTCAAGATGAATCCAGGTG...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR GCA 90 bp CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATTGGGTAGAGGGACTCTaGCCCATCGTGCCAAAAGAT +
Preference number: 4 (lower is better)
Translates to: HRRDALRLTLTMTLNKRYWVEGL*PIVPKD
Trigger: ATCTTTTGGCACGATGGGGCAGAGTCCCTCTACCCA...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR CCA 90 bp GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTGGTAATCACATCACCTaGATTCATCTTGAAGGTATA +
Preference number: 4 (lower is better)
Translates to: VLSLGEWPCKKMRPAGKAGNHIT*IHLEGI
Trigger: TATACCTTCAAGATGAATCCAGGTGATGTGATTACC...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR TCA 90 bp AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTAAGATCTGCATCAAATaGGCCCCATCCACTGCTTCT +
Preference number: 4 (lower is better)
Translates to: KLLFSSVWEAQQITTSFCKICIK*APSTAS
Trigger: AGAAGCAGTGGATGGGGCTCATTTGATGCAGATCTT...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR TCA 90 bp AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTAGAATATGGAAAGCCTaGGGGTTCTTCTCCTTGAGC +
Preference number: 4 (lower is better)
Translates to: KLLFSSVWEAQQITTSFCRIWKA*GFFSLS
Trigger: GCTCAAGGAGAAGAACCCTCAGGCTTTCCATATTCT...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR GCA 90 bp AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTGCATCAATCTTGTCCTaGACTTGCCAAGTGTGTCCA +
Preference number: 4 (lower is better)
Translates to: KLLFSSVWEAQQITTSFCASILS*TCQVCP
Trigger: TGGACACACTTGGCAAGTGCAGGACAAGATTGATGC...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR CCA 90 bp GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTAGCCATTTGTATGCATaGTCATCATCATTTAACACA +
Preference number: 4 (lower is better)
Translates to: VLSLGEWPCKKMRPAGKASHLYA*SSSFNT
Trigger: TGTGTTAAATGATGATGACCATGCATACAAATGGCT...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR TCA 90 bp CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATAGTCAGTGTGGAAGCTaGGCTTCCCAGTTGTATAAG +
Preference number: 4 (lower is better)
Translates to: HRRDALRLTLTMTLNKRYSQCGS*ASQLYK
Trigger: CTTATACAACTGGGAAGCTCAGCTTCCACACTGACT...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR CCA 90 bp AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTTTCTCCTTGAGCTTTTaGCACACGTTAAACCCATCC +
Preference number: 4 (lower is better)
Translates to: KLLFSSVWEAQQITTSFCFSLSF*HTLNPS
Trigger: GGATGGGTTTAACGTGTGCCAAAAGCTCAAGGAGAA...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR TCA 90 bp CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATGGTCATTGGGCCATGTaGTATAAACCTTTTTCCGGT +
Preference number: 4 (lower is better)
Translates to: HRRDALRLTLTMTLNKRYGHWAM*YKPFSG
Trigger: ACCGGAAAAAGGTTTATATCACATGGCCCAATGACC...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR TCA 90 bp AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTTCTGAGCCCCAGTACTaGCATTCTGGTAAAAACAAT +
Preference number: 4 (lower is better)
Translates to: KLLFSSVWEAQQITTSFCSEPQY*HSGKNN
Trigger: ATTGTTTTTACCAGAATGTCAGTACTGGGGCTCAGA...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR GCA 90 bp CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATGACTGTATCTCTGGTTaGATTGTTGAAGTTGACGCG +
Preference number: 4 (lower is better)
Translates to: HRRDALRLTLTMTLNKRYDCISG*IVEVDA
Trigger: CGCGTCAACTTCAACAATGCAACCAGAGATACAGTC...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR CCA 90 bp CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATAAAAACAATTCTCCTTaGAGCCTTGCTCTGGCCTGT +
Preference number: 4 (lower is better)
Translates to: HRRDALRLTLTMTLNKRYKNNSP*SLALAC
Trigger: ACAGGCCAGAGCAAGGCTCCAAGGAGAATTGTTTTT...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR CAA 72 bp CAGATTTTAGGCTGTGTATTTACCATGTTGGGGCACTaGAATGACATTGAAATCACTTGTGATAGCGATCAG +
Preference number: 4 (lower is better)
Translates to: QILGCVFTMLGH*NDIEITCDSDQ
Trigger: CTGATCGCTATCACAAGTGATTTCAATGTCATTCAAGTGCCCCAACATGGTAAATACACAGCCTAAAATCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR CCA 90 bp CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATTATAAGCCACATTGTTaGCATCAATCTTGTCCTGCA +
Preference number: 4 (lower is better)
Translates to: HRRDALRLTLTMTLNKRYYKPHC*HQSCPA
Trigger: TGCAGGACAAGATTGATGCCAACAATGTGGCTTATA...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR CAA 72 bp AGACAAATTAGAGAAGGAAGCCATGCTAACAAACTCTaGGTAAGCCAGTATTATCCTGATATCAAAACCAGA +
Preference number: 4 (lower is better)
Translates to: RQIREGSHANKL*VSQYYPDIKTR
Trigger: TCTGGTTTTGATATCAGGATAATACTGGCTTACCAAGAGTTTGTTAGCATGGCTTCCTTCTCTAATTTGTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR CAA 72 bp AATTGCTTTCAGATTTTAGGCTGTGTATTTACCATGTaGGGGCACTTGAATGACATTGAAATCACTTGTGAT +
Preference number: 4 (lower is better)
Translates to: NCFQILGCVFTM*GHLNDIEITCD
Trigger: ATCACAAGTGATTTCAATGTCATTCAAGTGCCCCAACATGGTAAATACACAGCCTAAAATCTGAAAGCAATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
3UTR CAA 72 bp AATGAAATATGTTGGTACTATCAGAATCTCATCAAATaGGAATTCCAAAGCTTCTTTTCTCATCCGTATGGG +
Preference number: 4 (lower is better)
Translates to: NEICWYYQNLIK*EFQSFFSHPYG
Trigger: CCCATACGGATGAGAAAAGAAGCTTTGGAATTCCAATTTGATGAGATTCTGATAGTACCAACATATTTCATT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CCA 90 bp CTTGATACAATGCAGAAGCTGAACCCCAGGTGGATGGTGGAGGGCTaGGTAGTCAGTGTGGAAGCTGAGCTTCCCAGTTGTATAAGCCAC +
Preference number: 5 (lower is better)
Translates to: LDTMQKLNPRWMVEG*VVSVEAELPSCISH
Trigger: GTGGCTTATACAACTGGGAAGCTCAGCTTCCACACTGACTACCCAGCCCTCCACCATCCACCTGGGGTTCAGCTTCTGCATTGTATCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS TCA 90 bp GAACCCCAGGTGGATGGTGGAGGGCTGGGTAGTCAGTGTGGAAGCTaGGCTTCCCAGTTGTATAAGCCACATTGTTGGCATCAATCTTGT +
Preference number: 5 (lower is better)
Translates to: EPQVDGGGLGSQCGS*ASQLYKPHCWHQSC
Trigger: ACAAGATTGATGCCAACAATGTGGCTTATACAACTGGGAAGCTCAGCTTCCACACTGACTACCCAGCCCTCCACCATCCACCTGGGGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR CAA 90 bp GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTCCTTGCTCTGGCCTGTaGAGAAAAGCATCTTTTCTT +
Preference number: 5 (lower is better)
Translates to: VLSLGEWPCKKMRPAGKAPCSGL*RKASFL
Trigger: AAGAAAAGATGCTTTTCTCAACAGGCCAGAGCAAGG...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS GCA 90 bp GCCAATTCTTTTCCCAAGTTTTATGATCTCACCACGTTTGTCAGCTaGTCCGGTGAGTCTCACAATGCCTACTTTCTTGAGACTGGAAAG +
Preference number: 5 (lower is better)
Translates to: ANSFPKFYDLTTFVS*SGESHNAYFLETGK
Trigger: CTTTCCAGTCTCAAGAAAGTAGGCATTGTGAGACTCACCGGAGCAGCTGACAAACGTGGTGAGATCATAAAACTTGGGAAAAGAATTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS GCA 90 bp AGGCTGAACTCTTTCGATGGGGACATCAAAGACTGTATCTCTGGTTaGATTGTTGAAGTTGACGCGAACCACTTGGCCTTTATCATCCAA +
Preference number: 5 (lower is better)
Translates to: RLNSFDGDIKDCISG*IVEVDANHLAFIIQ
Trigger: TTGGATGATAAAGGCCAAGTGGTTCGCGTCAACTTCAACAATGCAACCAGAGATACAGTCTTTGATGTCCCCATCGAAAGAGTTCAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR CAA 90 bp GTTCTATCACTAGGGGAGTGGCCATGCAAAAAGATGAGACCAGCTGGTAAGGCTTCCAACTCTATAATCTaGTGTTTAGATTGCACAGAG +
Preference number: 5 (lower is better)
Translates to: VLSLGEWPCKKMRPAGKASNSII*CLDCTE
Trigger: CTCTGTGCAATCTAAACACAAGATTATAGAGTTGGA...AGCCTTACCAGCTGGTCTCATCTTTTTGCATGGCCACTCCCCTAGTGATAGAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR CAA 90 bp AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTTTGTTGGCATCAATCTaGTCCTGCACTTGCCAAGTG +
Preference number: 5 (lower is better)
Translates to: KLLFSSVWEAQQITTSFCLLASI*SCTCQV
Trigger: CACTTGGCAAGTGCAGGACAAGATTGATGCCAACAA...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR CAA 90 bp CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATCTTCTCCTTGAGCTTTaGGCACACGTTAAACCCATC +
Preference number: 5 (lower is better)
Translates to: HRRDALRLTLTMTLNKRYLLLEL*AHVKPI
Trigger: GATGGGTTTAACGTGTGCCAAAAGCTCAAGGAGAAG...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR CAA 90 bp AAGCTTCTTTTCTCATCCGTATGGGAGGCTCAACAGATTACAACTTCATTCTGTTCAGAATACGAAGCCTaGACATCACTACATCCCAGT +
Preference number: 5 (lower is better)
Translates to: KLLFSSVWEAQQITTSFCSEYEA*TSLHPS
Trigger: ACTGGGATGTAGTGATGTCAAGGCTTCGTATTCTGA...ACAGAATGAAGTTGTAATCTGTTGAGCCTCCCATACGGATGAGAAAAGAAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CCA 90 bp CTCACAATGCCTACTTTCTTGAGACTGGAAAGCCATTTGTATGCATaGTCATCATCATTTAACACATCTTCAAAATTCAGAGTTGGCAGC +
Preference number: 5 (lower is better)
Translates to: LTMPTFLRLESHLYA*SSSFNTSSKFRVGS
Trigger: GCTGCCAACTCTGAATTTTGAAGATGTGTTAAATGATGATGACCATGCATACAAATGGCTTTCCAGTCTCAAGAAAGTAGGCATTGTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CCA 90 bp AAGACTGTATCTCTGGTTGCATTGTTGAAGTTGACGCGAACCACTTaGCCTTTATCATCCAACTCTATAATCTTGTGTTTAGATTGCACA +
Preference number: 5 (lower is better)
Translates to: KTVSLVALLKLTRTT*PLSSNSIILCLDCT
Trigger: TGTGCAATCTAAACACAAGATTATAGAGTTGGATGATAAAGGCCAAGTGGTTCGCGTCAACTTCAACAATGCAACCAGAGATACAGTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS-3UTR CAA 90 bp CACAGAAGGGATGCTTTGAGACTAACCCTTACCATGACACTAAATAAGAGATATTCACCTGGATTCATCTaGAAGGTATACTTGTATTCT +
Preference number: 5 (lower is better)
Translates to: HRRDALRLTLTMTLNKRYSPGFI*KVYLYS
Trigger: AGAATACAAGTATACCTTCAAGATGAATCCAGGTGA...ATATCTCTTATTTAGTGTCATGGTAAGGGTTAGTCTCAAAGCATCCCTTCTGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CCA 72 bp ATGCAGAAGCTGAACCCCAGGTGGATGGTGGAGGGCTaGGTAGTCAGTGTGGAAGCTGAGCTTCCCAGTTGT +
Preference number: 6 (lower is better)
Translates to: MQKLNPRWMVEG*VVSVEAELPSC
Trigger: ACAACTGGGAAGCTCAGCTTCCACACTGACTACCCAGCCCTCCACCATCCACCTGGGGTTCAGCTTCTGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS TCA 72 bp GTGGATGGTGGAGGGCTGGGTAGTCAGTGTGGAAGCTaGGCTTCCCAGTTGTATAAGCCACATTGTTGGCAT +
Preference number: 6 (lower is better)
Translates to: VDGGGLGSQCGS*ASQLYKPHCWH
Trigger: ATGCCAACAATGTGGCTTATACAACTGGGAAGCTCAGCTTCCACACTGACTACCCAGCCCTCCACCATCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS TCA 72 bp CCCATTCGTGACTCTCTGTCTCAGAATACGAAGCCTTaGCATCACTACATCCCAGTCAGCATACGCTCCTTC +
Preference number: 6 (lower is better)
Translates to: PIRDSLSQNTKP*HHYIPVSIRSF
Trigger: GAAGGAGCGTATGCTGACTGGGATGTAGTGATGTCAAGGCTTCGTATTCTGAGACAGAGAGTCACGAATGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 90 bp CGAGGAGAGAATATGGAAAGCCTGAGGGTTCTTCTCCTTGAGCTTTaGGCACACGTTAAACCCATCCACAATTTCAGAGTCACCTCCTGT +
Preference number: 6 (lower is better)
Translates to: RGENMESLRVLLLEL*AHVKPIHNFRVTSC
Trigger: ACAGGAGGTGACTCTGAAATTGTGGATGGGTTTAACGTGTGCCAAAAGCTCAAGGAGAAGAACCCTCAGGCTTTCCATATTCTCTCCTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 72 bp TCAGCTGCTCCGGTGAGTCTCACAATGCCTACTTTCTaGAGACTGGAAAGCCATTTGTATGCATGGTCATCA +
Preference number: 6 (lower is better)
Translates to: SAAPVSLTMPTF*RLESHLYAWSS
Trigger: TGATGACCATGCATACAAATGGCTTTCCAGTCTCAAGAAAGTAGGCATTGTGAGACTCACCGGAGCAGCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 90 bp CCACGTTTGTCAGCTGCTCCGGTGAGTCTCACAATGCCTACTTTCTaGAGACTGGAAAGCCATTTGTATGCATGGTCATCATCATTTAAC +
Preference number: 6 (lower is better)
Translates to: PRLSAAPVSLTMPTF*RLESHLYAWSSSFN
Trigger: GTTAAATGATGATGACCATGCATACAAATGGCTTTCCAGTCTCAAGAAAGTAGGCATTGTGAGACTCACCGGAGCAGCTGACAAACGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS GCA 72 bp TTTCCCAAGTTTTATGATCTCACCACGTTTGTCAGCTaGTCCGGTGAGTCTCACAATGCCTACTTTCTTGAG +
Preference number: 6 (lower is better)
Translates to: FPKFYDLTTFVS*SGESHNAYFLE
Trigger: CTCAAGAAAGTAGGCATTGTGAGACTCACCGGAGCAGCTGACAAACGTGGTGAGATCATAAAACTTGGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS GCA 72 bp TCTTTCGATGGGGACATCAAAGACTGTATCTCTGGTTaGATTGTTGAAGTTGACGCGAACCACTTGGCCTTT +
Preference number: 6 (lower is better)
Translates to: SFDGDIKDCISG*IVEVDANHLAF
Trigger: AAAGGCCAAGTGGTTCGCGTCAACTTCAACAATGCAACCAGAGATACAGTCTTTGATGTCCCCATCGAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CCA 72 bp CTTTCAGAGCAGCGTAGAAAGGCTGAACTCTTTCGATaGGGACATCAAAGACTGTATCTCTGGTTGCATTGT +
Preference number: 6 (lower is better)
Translates to: LSEQRRKAELFR*GHQRLYLWLHC
Trigger: ACAATGCAACCAGAGATACAGTCTTTGATGTCCCCATCGAAAGAGTTCAGCCTTTCTACGCTGCTCTGAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 72 bp CCAATTCTTTTCCCAAGTTTTATGATCTCACCACGTTaGTCAGCTGCTCCGGTGAGTCTCACAATGCCTACT +
Preference number: 6 (lower is better)
Translates to: PILFPSFMISPR*SAAPVSLTMPT
Trigger: AGTAGGCATTGTGAGACTCACCGGAGCAGCTGACAAACGTGGTGAGATCATAAAACTTGGGAAAAGAATTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 90 bp TACAGGAAGCCAATTCTTTTCCCAAGTTTTATGATCTCACCACGTTaGTCAGCTGCTCCGGTGAGTCTCACAATGCCTACTTTCTTGAGA +
Preference number: 6 (lower is better)
Translates to: YRKPILFPSFMISPR*SAAPVSLTMPTFLR
Trigger: TCTCAAGAAAGTAGGCATTGTGAGACTCACCGGAGCAGCTGACAAACGTGGTGAGATCATAAAACTTGGGAAAAGAATTGGCTTCCTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 90 bp CCCAGTTGTATAAGCCACATTGTTGGCATCAATCTTGTCCTGCACTaGCCAAGTGTGTCCATAAAATGTGAGGTACAGGAAGCCAATTCT +
Preference number: 6 (lower is better)
Translates to: PSCISHIVGINLVLH*PSVSIKCEVQEANS
Trigger: AGAATTGGCTTCCTGTACCTCACATTTTATGGACACACTTGGCAAGTGCAGGACAAGATTGATGCCAACAATGTGGCTTATACAACTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 72 bp AATATGGAAAGCCTGAGGGTTCTTCTCCTTGAGCTTTaGGCACACGTTAAACCCATCCACAATTTCAGAGTC +
Preference number: 6 (lower is better)
Translates to: NMESLRVLLLEL*AHVKPIHNFRV
Trigger: GACTCTGAAATTGTGGATGGGTTTAACGTGTGCCAAAAGCTCAAGGAGAAGAACCCTCAGGCTTTCCATATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 90 bp TCGATGGGGACATCAAAGACTGTATCTCTGGTTGCATTGTTGAAGTaGACGCGAACCACTTGGCCTTTATCATCCAACTCTATAATCTTG +
Preference number: 6 (lower is better)
Translates to: SMGTSKTVSLVALLK*TRTTWPLSSNSIIL
Trigger: CAAGATTATAGAGTTGGATGATAAAGGCCAAGTGGTTCGCGTCAACTTCAACAATGCAACCAGAGATACAGTCTTTGATGTCCCCATCGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 72 bp ATAAGCCACATTGTTGGCATCAATCTTGTCCTGCACTaGCCAAGTGTGTCCATAAAATGTGAGGTACAGGAA +
Preference number: 6 (lower is better)
Translates to: ISHIVGINLVLH*PSVSIKCEVQE
Trigger: TTCCTGTACCTCACATTTTATGGACACACTTGGCAAGTGCAGGACAAGATTGATGCCAACAATGTGGCTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 72 bp ACATCAAAGACTGTATCTCTGGTTGCATTGTTGAAGTaGACGCGAACCACTTGGCCTTTATCATCCAACTCT +
Preference number: 6 (lower is better)
Translates to: TSKTVSLVALLK*TRTTWPLSSNS
Trigger: AGAGTTGGATGATAAAGGCCAAGTGGTTCGCGTCAACTTCAACAATGCAACCAGAGATACAGTCTTTGATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 90 bp CCGGTGAGTCTCACAATGCCTACTTTCTTGAGACTGGAAAGCCATTaGTATGCATGGTCATCATCATTTAACACATCTTCAAAATTCAGA +
Preference number: 6 (lower is better)
Translates to: PVSLTMPTFLRLESH*YAWSSSFNTSSKFR
Trigger: TCTGAATTTTGAAGATGTGTTAAATGATGATGACCATGCATACAAATGGCTTTCCAGTCTCAAGAAAGTAGGCATTGTGAGACTCACCGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 90 bp AAAGACTGTATCTCTGGTTGCATTGTTGAAGTTGACGCGAACCACTaGGCCTTTATCATCCAACTCTATAATCTTGTGTTTAGATTGCAC +
Preference number: 6 (lower is better)
Translates to: KDCISGCIVEVDANH*AFIIQLYNLVFRLH
Trigger: GTGCAATCTAAACACAAGATTATAGAGTTGGATGATAAAGGCCAAGTGGTTCGCGTCAACTTCAACAATGCAACCAGAGATACAGTCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 72 bp CAGTTGTCGAAGGTAATCACATCACCTGGATTCATCTaGAAGGTATACTTGTATTCTTTGCTGTTCATGAGG +
Preference number: 6 (lower is better)
Translates to: QLSKVITSPGFI*KVYLYSLLFMR
Trigger: CCTCATGAACAGCAAAGAATACAAGTATACCTTCAAGATGAATCCAGGTGATGTGATTACCTTCGACAACTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 90 bp TTGTCGAAGGTAATCACATCACCTGGATTCATCTTGAAGGTATACTaGTATTCTTTGCTGTTCATGAGGTCAACAAACTCTTTCAGAGCA +
Preference number: 6 (lower is better)
Translates to: LSKVITSPGFILKVY*YSLLFMRSTNSFRA
Trigger: TGCTCTGAAAGAGTTTGTTGACCTCATGAACAGCAAAGAATACAAGTATACCTTCAAGATGAATCCAGGTGATGTGATTACCTTCGACAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9
CDS CAA 72 bp GTAATCACATCACCTGGATTCATCTTGAAGGTATACTaGTATTCTTTGCTGTTCATGAGGTCAACAAACTCT +
Preference number: 6 (lower is better)
Translates to: VITSPGFILKVY*YSLLFMRSTNS
Trigger: AGAGTTTGTTGACCTCATGAACAGCAAAGAATACAAGTATACCTTCAAGATGAATCCAGGTGATGTGATTAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046233.9