Pregenerated sensors for BBIP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000084957Ensembl transcript IDs: ENSMUST00000135402.4, ENSMUST00000235348.2, ENSMUST00000235688.2, ENSMUST00000236370.2, ENSMUST00000236885.2
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAAGGTGTAGGGGATCAGCTGTCTTCTCGTGCTTCCATGGGCACCTaGATACAGGTGCATACACACCGACATGTATTACACATTTTAAAA | + |
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Preference number: 1 (lower is better) Translates to: KGVGDQLSSRASMGT*IQVHTHRHVLHILK Trigger: TTTTAAAATGTGTAATACATGTCGGTGTGTATGCACCTGTATGCAGGTGCCCATGGAAGCACGAGAAGACAGCTGATCCCCTACACCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR GCA 90 bp | TGTTCAAACTTCACGGCTCTTTTAGGCTCATGTCACCTGAGTTTTTaGTATAATAAGCAGCTCAGGGTTTGTATTTGGGACTTGAGTAGC | + |
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Preference number: 1 (lower is better) Translates to: CSNFTALLGSCHLSF*YNKQLRVCIWDLSS Trigger: GCTACTCAAGTCCCAAATACAAACCCTGAGCTGCTTATTATAGCAAAAACTCAGGTGACATGAGCCTAAAAGAGCCGTGAAGTTTGAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR GCA 90 bp | CTTGTGTTCAATCCTAACAGTGCAAACCAAACAAAAATGTTTCATTaGTTCTTGAGACAGAACCTGCTCTATAGCTCTGGCTGGCCTGAT | + |
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Preference number: 1 (lower is better) Translates to: LVFNPNSANQTKMFH*FLRQNLLYSSGWPD Trigger: ATCAGGCCAGCCAGAGCTATAGAGCAGGTTCTGTCTCAAGAAGCAATGAAACATTTTTGTTTGGTTTGCACTGTTAGGATTGAACACAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR TCA 90 bp | AAAAAGATTGTATCTAAGTACAGTGTAGCTGTCTTCAGACACACCTaGAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCTACCAT | + |
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Preference number: 1 (lower is better) Translates to: KKIVSKYSVAVFRHT*RGHQISLQMVVSYH Trigger: ATGGTAGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCAGGTGTGTCTGAAGACAGCTACACTGTACTTAGATACAATCTTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR CCA 90 bp | CGTAGCAGTCAGCATGATGTGGCCCACACTTGCTTATGTGTATTTTaGGTAGTGTACAAGCCCAACAATATATTCACATTAAAGTTTATT | + |
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Preference number: 1 (lower is better) Translates to: RSSQHDVAHTCLCVF*VVYKPNNIFTLKFI Trigger: AATAAACTTTAATGTGAATATATTGTTGGGCTTGTACACTACCCAAAATACACATAAGCAAGTGTGGGCCACATCATGCTGACTGCTACG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR CCA 90 bp | TGTCACCTGAGTTTTTGCTATAATAAGCAGCTCAGGGTTTGTATTTaGGACTTGAGTAGCAGTTGTGTAATTCTCTGTTTCTTAACATTG | + |
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Preference number: 1 (lower is better) Translates to: CHLSFCYNKQLRVCI*DLSSSCVILCFLTL Trigger: CAATGTTAAGAAACAGAGAATTACACAACTGCTACTCAAGTCCCAAATACAAACCCTGAGCTGCTTATTATAGCAAAAACTCAGGTGACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR-3UTR GCA 90 bp | TCTGGTAGAGAGCAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGACCTATTTTCTAGCCTGCAGATaGAGAATAGTTTCTAGTTAC | + |
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Preference number: 2 (lower is better) Translates to: SGREQSVLLTSEPSLQTYFLACR*RIVSSY Trigger: GTAACTAGAAACTATTCTGCATCTGCAGGCTAGAAA...ATAGGTCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGACTGCTCTCTACCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR-3UTR GCA 90 bp | CTGAGTTTTTGCTATAATAAGCAGCTCAGGGTTTGTATTTGGGACTTGAGTAGCCTTGCTTCAGAGTTTTaGTTTGAACACAAACCAATG | + |
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Preference number: 2 (lower is better) Translates to: LSFCYNKQLRVCIWDLSSLASEF*FEHKPM Trigger: CATTGGTTTGTGTTCAAAGCAAAACTCTGAAGCAAG...GCTACTCAAGTCCCAAATACAAACCCTGAGCTGCTTATTATAGCAAAAACTCAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR-3UTR GCA 90 bp | TCCATGAAACTTGCTTCAGAGTTTTGCTTTGAACACAAACCAATGTTTGAACACTTTCTAGCCTGCAGATaGAGAATAGTTTCTAGTTAC | + |
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Preference number: 2 (lower is better) Translates to: SMKLASEFCFEHKPMFEHFLACR*RIVSSY Trigger: GTAACTAGAAACTATTCTGCATCTGCAGGCTAGAAA...GTGTTCAAACATTGGTTTGTGTTCAAAGCAAAACTCTGAAGCAAGTTTCATGGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000135402.4 ENSMUST00000235348.2 ENSMUST00000235688.2 ENSMUST00000236370.2 ENSMUST00000236885.2 |
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| 3UTR-3UTR GCA 90 bp | TCAGAGTTTTGCTTTGAACACAAACCAATGTTTGAACACCCACATTTTGTGTTTTTTCTAGCCTGCAGATaGAGAATAGTTTCTAGTTAC | + |
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Preference number: 2 (lower is better) Translates to: SEFCFEHKPMFEHPHFVFFLACR*RIVSSY Trigger: GTAACTAGAAACTATTCTGCATCTGCAGGCTAGAAA...AAACACAAAATGTGGGTGTTCAAACATTGGTTTGTGTTCAAAGCAAAACTCTGA 36% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 5 transcripts: ENSMUST00000135402.4 ENSMUST00000235348.2 ENSMUST00000235688.2 ENSMUST00000236370.2 ENSMUST00000236885.2 |
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| 3UTR GCA 72 bp | GGGGATCAGCTGTCTTCTCGTGCTTCCATGGGCACCTaGATACAGGTGCATACACACCGACATGTATTACAC | + |
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Preference number: 3 (lower is better) Translates to: GDQLSSRASMGT*IQVHTHRHVLH Trigger: GTGTAATACATGTCGGTGTGTATGCACCTGTATGCAGGTGCCCATGGAAGCACGAGAAGACAGCTGATCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR CCA 72 bp | CTCTCCAGACCTATTGAAGGTTTCCTAAAGACCAGTTaGTTATTCCTGCTGTCACTGGTCAGGCTCCGTAGC | + |
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Preference number: 3 (lower is better) Translates to: LSRPIEGFLKTS*LFLLSLVRLRS Trigger: GCTACGGAGCCTGACCAGTGACAGCAGGAATAACCAACTGGTCTTTAGGAAACCTTCAATAGGTCTGGAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR TCA 72 bp | CCTGAAGAGGGCATCAGATCTCATTACAGATGGTTGTaGGCTACCATGTGGTTGCTGGGATTTGAACTCAGG | + |
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Preference number: 3 (lower is better) Translates to: PEEGIRSHYRWL*ATMWLLGFELR Trigger: CCTGAGTTCAAATCCCAGCAACCACATGGTAGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR GCA 72 bp | GATCTCATTACAGATGGTTGTGAGCTACCATGTGGTTaGTGGGATTTGAACTCAGGACCTCTGGTAGAGAGC | + |
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Preference number: 3 (lower is better) Translates to: DLITDGCELPCG*WDLNSGPLVES Trigger: GCTCTCTACCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTAGCTCACAACCATCTGTAATGAGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR CCA 72 bp | CTCATTACAGATGGTTGTGAGCTACCATGTGGTTGCTaGGATTTGAACTCAGGACCTCTGGTAGAGAGCAGT | + |
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Preference number: 3 (lower is better) Translates to: LITDGCELPCGC*DLNSGPLVESS Trigger: ACTGCTCTCTACCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTAGCTCACAACCATCTGTAATGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR CCA 72 bp | TGCTTCTTGAGACAGAACCTGCTCTATAGCTCTGGCTaGCCTGATAATTGTTTAGGTAGTCCAGTCTTTCTG | + |
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Preference number: 3 (lower is better) Translates to: CFLRQNLLYSSG*PDNCLGSPVFL Trigger: CAGAAAGACTGGACTACCTAAACAATTATCAGGCCAGCCAGAGCTATAGAGCAGGTTCTGTCTCAAGAAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR-3UTR CAA 90 bp | TCTGGTAGAGAGCAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGACCTATAACACAAACCAATGTTaGAACACCCACATTTTGTGT | + |
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Preference number: 3 (lower is better) Translates to: SGREQSVLLTSEPSLQTYNTNQC*NTHILC Trigger: ACACAAAATGTGGGTGTTCAAACATTGGTTTGTGTT...ATAGGTCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGACTGCTCTCTACCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR TCA 72 bp | GTATCTAAGTACAGTGTAGCTGTCTTCAGACACACCTaGAGAGGGCATCAGATCTCATTACAGATGGTTGTG | + |
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Preference number: 3 (lower is better) Translates to: VSKYSVAVFRHT*RGHQISLQMVV Trigger: CACAACCATCTGTAATGAGATCTGATGCCCTCTTCAGGTGTGTCTGAAGACAGCTACACTGTACTTAGATAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR GCA 72 bp | TTCACGGCTCTTTTAGGCTCATGTCACCTGAGTTTTTaGTATAATAAGCAGCTCAGGGTTTGTATTTGGGAC | + |
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Preference number: 3 (lower is better) Translates to: FTALLGSCHLSF*YNKQLRVCIWD Trigger: GTCCCAAATACAAACCCTGAGCTGCTTATTATAGCAAAAACTCAGGTGACATGAGCCTAAAAGAGCCGTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| 3UTR CCA 72 bp | AGTTTTTGCTATAATAAGCAGCTCAGGGTTTGTATTTaGGACTTGAGTAGCAGTTGTGTAATTCTCTGTTTC | + |
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Preference number: 3 (lower is better) Translates to: SFCYNKQLRVCI*DLSSSCVILCF Trigger: GAAACAGAGAATTACACAACTGCTACTCAAGTCCCAAATACAAACCCTGAGCTGCTTATTATAGCAAAAACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| CDS-3UTR CCA 90 bp | TGGTTATTCCTGCTGTCACTGGTCAGGCTCCGTAGCAGTCAGCATGATGTGGCCCAACTGCCCTTGTTTTaGAAGGACTTCTCGGAACAT | + |
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Preference number: 4 (lower is better) Translates to: WLFLLSLVRLRSSQHDVAQLPLF*KDFSEH Trigger: ATGTTCCGAGAAGTCCTTCCAAAACAAGGGCAGTTG...GGCCACATCATGCTGACTGCTACGGAGCCTGACCAGTGACAGCAGGAATAACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| CDS-3UTR GCA 90 bp | CTGAGTTTTTGCTATAATAAGCAGCTCAGGGTTTGTATTTGGGACTTGAGTAGCGCTCGTTGCCTTTTCTaGCATTTCTTGTTGACGGAC | + |
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Preference number: 4 (lower is better) Translates to: LSFCYNKQLRVCIWDLSSARCLF*HFLLTD Trigger: GTCCGTCAACAAGAAATGGCAGAAAAGGCAACGAGC...GCTACTCAAGTCCCAAATACAAACCCTGAGCTGCTTATTATAGCAAAAACTCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| CDS-3UTR GCA 90 bp | TTGCTTCAGAGTTTTGCTTTGAACACAAACCAATGTTTGAACACCCACATTTTGGCTCGTTGCCTTTTCTaGCATTTCTTGTTGACGGAC | + |
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Preference number: 4 (lower is better) Translates to: LLQSFALNTNQCLNTHILARCLF*HFLLTD Trigger: GTCCGTCAACAAGAAATGGCAGAAAAGGCAACGAGC...CAAAATGTGGGTGTTCAAACATTGGTTTGTGTTCAAAGCAAAACTCTGAAGCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000135402.4 ENSMUST00000235348.2 ENSMUST00000235688.2 ENSMUST00000236370.2 ENSMUST00000236885.2 |
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| CDS-3UTR GCA 90 bp | TCAGAGTTTTGCTTTGAACACAAACCAATGTTTGAACACCCACATTTTGTGTTTGCTCGTTGCCTTTTCTaGCATTTCTTGTTGACGGAC | + |
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Preference number: 4 (lower is better) Translates to: SEFCFEHKPMFEHPHFVFARCLF*HFLLTD Trigger: GTCCGTCAACAAGAAATGGCAGAAAAGGCAACGAGC...AAACACAAAATGTGGGTGTTCAAACATTGGTTTGTGTTCAAAGCAAAACTCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000135402.4 ENSMUST00000235348.2 ENSMUST00000235688.2 ENSMUST00000236370.2 ENSMUST00000236885.2 |
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| CDS-3UTR CCA 90 bp | TTGCTTCAGAGTTTTGCTTTGAACACAAACCAATGTTTGAACACCCACATTTTGCAACTGCCCTTGTTTTaGAAGGACTTCTCGGAACAT | + |
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Preference number: 4 (lower is better) Translates to: LLQSFALNTNQCLNTHILQLPLF*KDFSEH Trigger: ATGTTCCGAGAAGTCCTTCCAAAACAAGGGCAGTTG...CAAAATGTGGGTGTTCAAACATTGGTTTGTGTTCAAAGCAAAACTCTGAAGCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000135402.4 ENSMUST00000235348.2 ENSMUST00000235688.2 ENSMUST00000236370.2 ENSMUST00000236885.2 |
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| CDS-3UTR CCA 90 bp | TCAGAGTTTTGCTTTGAACACAAACCAATGTTTGAACACCCACATTTTGTGTTTCAACTGCCCTTGTTTTaGAAGGACTTCTCGGAACAT | + |
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Preference number: 4 (lower is better) Translates to: SEFCFEHKPMFEHPHFVFQLPLF*KDFSEH Trigger: ATGTTCCGAGAAGTCCTTCCAAAACAAGGGCAGTTG...AAACACAAAATGTGGGTGTTCAAACATTGGTTTGTGTTCAAAGCAAAACTCTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000135402.4 ENSMUST00000235348.2 ENSMUST00000235688.2 ENSMUST00000236370.2 ENSMUST00000236885.2 |
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| 3UTR CAA 72 bp | TGCTATAATAAGCAGCTCAGGGTTTGTATTTGGGACTaGAGTAGCAGTTGTGTAATTCTCTGTTTCTTAACA | + |
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Preference number: 4 (lower is better) Translates to: CYNKQLRVCIWD*SSSCVILCFLT Trigger: TGTTAAGAAACAGAGAATTACACAACTGCTACTCAAGTCCCAAATACAAACCCTGAGCTGCTTATTATAGCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| CDS-3UTR CAA 90 bp | TCTGGTAGAGAGCAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGACCTATACAACTGCCCTTGTTTaGGAAGGACTTCTCGGAACA | + |
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Preference number: 5 (lower is better) Translates to: SGREQSVLLTSEPSLQTYTTALV*EGLLGT Trigger: TGTTCCGAGAAGTCCTTCCAAAACAAGGGCAGTTGT...ATAGGTCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGACTGCTCTCTACCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135402.4 |
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| CDS-3UTR CAA 90 bp | ATGAAACTTGCTTCAGAGTTTTGCTTTGAACACAAACCAATGTTTGAACACCCAACAACTGCCCTTGTTTaGGAAGGACTTCTCGGAACA | + |
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Preference number: 5 (lower is better) Translates to: MKLASEFCFEHKPMFEHPTTALV*EGLLGT Trigger: TGTTCCGAGAAGTCCTTCCAAAACAAGGGCAGTTGT...TGGGTGTTCAAACATTGGTTTGTGTTCAAAGCAAAACTCTGAAGCAAGTTTCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000135402.4 ENSMUST00000235348.2 ENSMUST00000235688.2 ENSMUST00000236370.2 ENSMUST00000236885.2 |
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| CDS-3UTR CAA 90 bp | TCCATGAAACTTGCTTCAGAGTTTTGCTTTGAACACAAACCAATGTTTGAACACACAACTGCCCTTGTTTaGGAAGGACTTCTCGGAACA | + |
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Preference number: 5 (lower is better) Translates to: SMKLASEFCFEHKPMFEHTTALV*EGLLGT Trigger: TGTTCCGAGAAGTCCTTCCAAAACAAGGGCAGTTGT...GTGTTCAAACATTGGTTTGTGTTCAAAGCAAAACTCTGAAGCAAGTTTCATGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000135402.4 ENSMUST00000235348.2 ENSMUST00000235688.2 ENSMUST00000236370.2 ENSMUST00000236885.2 |
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| CDS-3UTR CAA 90 bp | TTGCTTCAGAGTTTTGCTTTGAACACAAACCAATGTTTGAACACCCACATTTTGACAACTGCCCTTGTTTaGGAAGGACTTCTCGGAACA | + |
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Preference number: 5 (lower is better) Translates to: LLQSFALNTNQCLNTHILTTALV*EGLLGT Trigger: TGTTCCGAGAAGTCCTTCCAAAACAAGGGCAGTTGT...CAAAATGTGGGTGTTCAAACATTGGTTTGTGTTCAAAGCAAAACTCTGAAGCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000135402.4 ENSMUST00000235348.2 ENSMUST00000235688.2 ENSMUST00000236370.2 ENSMUST00000236885.2 |
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