Pregenerated sensors for BBC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002083Ensembl transcript IDs: ENSMUST00000002152.13, ENSMUST00000136781.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGCGGCAGAGGCGGGCGGCTCGGTCCCCACCCCCTCAGTCACCATaGGTCCTTCAGCCCTCCCTTCCCTGGCTTTCGGGAGGCCAGGGT | + |
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Preference number: 1 (lower is better) Translates to: GRQRRAARSPPPQSP*VLQPSLPWLSGGQG Trigger: ACCCTGGCCTCCCGAAAGCCAGGGAAGGGAGGGCTGAAGGACTCATGGTGACTGAGGGGGTGGGGACCGAGCCGCCCGCCTCTGCCGCCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CCA 90 bp | GCTGGAACGGGCAGCCAGCACCAGCAGCCTTTCCTGAGATGGTGGTaGGCGGCAGAGGCGGGCGGCTCGGTCCCCACCCCCTCAGTCACC | + |
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Preference number: 1 (lower is better) Translates to: AGTGSQHQQPFLRWW*AAEAGGSVPTPSVT Trigger: GGTGACTGAGGGGGTGGGGACCGAGCCGCCCGCCTCTGCCGCCCACCACCATCTCAGGAAAGGCTGCTGGTGCTGGCTGCCCGTTCCAGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CCA 90 bp | GCAGCTGGAACGGGCAGCCAGCACCAGCAGCCTTTCCTGAGATGGTaGTGGGCGGCAGAGGCGGGCGGCTCGGTCCCCACCCCCTCAGTC | + |
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Preference number: 1 (lower is better) Translates to: AAGTGSQHQQPFLRW*WAAEAGGSVPTPSV Trigger: GACTGAGGGGGTGGGGACCGAGCCGCCCGCCTCTGCCGCCCACCACCATCTCAGGAAAGGCTGCTGGTGCTGGCTGCCCGTTCCAGCTGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CCA 90 bp | CAAGTCCGTATCTCCATCAGTGCACCCAGGCTGCCCGGGCTCGAGTaGCATCCCTTGCCTGCCCCTGGGACGGGCAAGGCTGGCAGTCCA | + |
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Preference number: 1 (lower is better) Translates to: QVRISISAPRLPGLE*HPLPAPGTGKAGSP Trigger: TGGACTGCCAGCCTTGCCCGTCCCAGGGGCAGGCAAGGGATGCCACTCGAGCCCGGGCAGCCTGGGTGCACTGATGGAGATACGGACTTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR GCA 90 bp | CATCAGTGCACCCAGGCTGCCCGGGCTCGAGTGGCATCCCTTGCCTaGCCCTGGGACGGGCAAGGCTGGCAGTCCAGTATGCTACATGGT | + |
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Preference number: 1 (lower is better) Translates to: HQCTQAARARVASLA*PWDGQGWQSSMLHG Trigger: ACCATGTAGCATACTGGACTGCCAGCCTTGCCCGTCCCAGGGGCAGGCAAGGGATGCCACTCGAGCCCGGGCAGCCTGGGTGCACTGATG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR GCA 90 bp | TCTCCATCAGTGCACCCAGGCTGCCCGGGCTCGAGTGGCATCCCTTaGCTGCCCCTGGGACGGGCAAGGCTGGCAGTCCAGTATGCTACA | + |
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Preference number: 1 (lower is better) Translates to: SPSVHPGCPGSSGIP*LPLGRARLAVQYAT Trigger: TGTAGCATACTGGACTGCCAGCCTTGCCCGTCCCAGGGGCAGGCAAGGGATGCCACTCGAGCCCGGGCAGCCTGGGTGCACTGATGGAGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CCA 90 bp | TGCACCCAGGCTGCCCGGGCTCGAGTGGCATCCCTTGCCTGCCCCTaGGACGGGCAAGGCTGGCAGTCCAGTATGCTACATGGTGCAGAA | + |
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Preference number: 1 (lower is better) Translates to: CTQAARARVASLACP*DGQGWQSSMLHGAE Trigger: TTCTGCACCATGTAGCATACTGGACTGCCAGCCTTGCCCGTCCCAGGGGCAGGCAAGGGATGCCACTCGAGCCCGGGCAGCCTGGGTGCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CCA 90 bp | GGGTGGTCCCGGGCAGAGCACAGGATTCACAGTCTGGACCCCTCCTaGACACCCCCAGATGAAGGTGAGGCAGGCATCGTTCACCGCCCG | + |
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Preference number: 1 (lower is better) Translates to: GWSRAEHRIHSLDPS*TPPDEGEAGIVHRP Trigger: CGGGCGGTGAACGATGCCTGCCTCACCTTCATCTGGGGGTGTCCAGGAGGGGTCCAGACTGTGAATCCTGTGCTCTGCCCGGGACCACCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CAA 90 bp | ATCTCCATCAGTGCACCCAGGCTGCCCGGGCTCGAGTGGCATCCCTaGCCTGCCCCTGGGACGGGCAAGGCTGGCAGTCCAGTATGCTAC | + |
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Preference number: 2 (lower is better) Translates to: ISISAPRLPGLEWHP*PAPGTGKAGSPVCY Trigger: GTAGCATACTGGACTGCCAGCCTTGCCCGTCCCAGGGGCAGGCAAGGGATGCCACTCGAGCCCGGGCAGCCTGGGTGCACTGATGGAGAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR-3UTR TCA 90 bp | CGTTCACCGCCCGCCGGCGGCTCAGGGAAGATGGCTGGGCACTGGGTTAAGAAGCCCCCTCAGTCACCATaGGTCCTTCAGCCCTCCCTT | + |
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Preference number: 2 (lower is better) Translates to: RSPPAGGSGKMAGHWVKKPPQSP*VLQPSL Trigger: AAGGGAGGGCTGAAGGACTCATGGTGACTGAGGGGG...CTTCTTAACCCAGTGCCCAGCCATCTTCCCTGAGCCGCCGGCGGGCGGTGAACG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR-3UTR CCA 90 bp | ACAGCAGTGCATGTACAGTATCTTACAGGCTGGGCCGTCCCTCCCCGCTCCCAGCAGCCTTTCCTGAGATaGTGGTGGGCGGCAGAGGCG | + |
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Preference number: 2 (lower is better) Translates to: TAVHVQYLTGWAVPPRSQQPFLR*WWAAEA Trigger: CGCCTCTGCCGCCCACCACCATCTCAGGAAAGGCTG...CTGGGAGCGGGGAGGGACGGCCCAGCCTGTAAGATACTGTACATGCACTGCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR-3UTR CCA 90 bp | GAGCACAGGATTCACAGTCTGGACCCCTCCTGGACACCCCCAGATGAAGGTGAGGCGGCTCAGGGAAGATaGCTGGGCACTGGGTTAAGA | + |
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Preference number: 2 (lower is better) Translates to: EHRIHSLDPSWTPPDEGEAAQGR*LGTGLR Trigger: TCTTAACCCAGTGCCCAGCCATCTTCCCTGAGCCGC...CTCACCTTCATCTGGGGGTGTCCAGGAGGGGTCCAGACTGTGAATCCTGTGCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR-3UTR CCA 90 bp | TCTACAGCAGTGCATGTACAGTATCTTACAGGCTGGGCCGTCCCTCCCCGCTCCACAGGATTCACAGTCTaGACCCCTCCTGGACACCCC | + |
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Preference number: 2 (lower is better) Translates to: STAVHVQYLTGWAVPPRSTGFTV*TPPGHP Trigger: GGGGTGTCCAGGAGGGGTCCAGACTGTGAATCCTGT...GGAGCGGGGAGGGACGGCCCAGCCTGTAAGATACTGTACATGCACTGCTGTAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR-3UTR CCA 90 bp | AGCACAGGATTCACAGTCTGGACCCCTCCTGGACACCCCCAGATGAAGGTGAGGTGGGACGGGCAAGGCTaGCAGTCCAGTATGCTACAT | + |
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Preference number: 2 (lower is better) Translates to: STGFTVWTPPGHPQMKVRWDGQG*QSSMLH Trigger: ATGTAGCATACTGGACTGCCAGCCTTGCCCGTCCCA...CCTCACCTTCATCTGGGGGTGTCCAGGAGGGGTCCAGACTGTGAATCCTGTGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR-3UTR TCA 90 bp | TTCCAGTATATCTACAGCAGTGCATGTACAGTATCTTACAGGCTGGGCCGTCCCACCAGCAGCCTTTCCTaGGATGGTGGTGGGCGGCAG | + |
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Preference number: 2 (lower is better) Translates to: FQYIYSSACTVSYRLGRPTSSLS*DGGGRQ Trigger: CTGCCGCCCACCACCATCTCAGGAAAGGCTGCTGGT...GGGACGGCCCAGCCTGTAAGATACTGTACATGCACTGCTGTAGATATACTGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR-3UTR CCA 90 bp | AGCACAGGATTCACAGTCTGGACCCCTCCTGGACACCCCCAGATGAAGGTGAGGAAGATGGCTGGGCACTaGGTTAAGAAGGCCTTCACA | + |
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Preference number: 2 (lower is better) Translates to: STGFTVWTPPGHPQMKVRKMAGH*VKKAFT Trigger: TGTGAAGGCCTTCTTAACCCAGTGCCCAGCCATCTT...CCTCACCTTCATCTGGGGGTGTCCAGGAGGGGTCCAGACTGTGAATCCTGTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR-3UTR GCA 90 bp | CCATTCTCTGGCTCCAGGAGGCTAGTGGTCAGGTTTGGCTCATATGCTCTTCACCAGTATGCTACATGGTaGAGAAAAAGTCCCCCGCGC | + |
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Preference number: 2 (lower is better) Translates to: PFSGSRRLVVRFGSYALHQYATW*RKSPPR Trigger: GCGCGGGGGACTTTTTCTGCACCATGTAGCATACTG...GTGAAGAGCATATGAGCCAAACCTGACCACTAGCCTCCTGGAGCCAGAGAATGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR-3UTR CCA 90 bp | CCATTCTCTGGCTCCAGGAGGCTAGTGGTCAGGTTTGGCTCATATGCTCTTCACGTCCAGTATGCTACATaGTGCAGAAAAAGTCCCCCG | + |
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Preference number: 2 (lower is better) Translates to: PFSGSRRLVVRFGSYALHVQYAT*CRKSPP Trigger: CGGGGGACTTTTTCTGCACCATGTAGCATACTGGAC...GTGAAGAGCATATGAGCCAAACCTGACCACTAGCCTCCTGGAGCCAGAGAATGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR-3UTR GCA 90 bp | GAAAATTCATTCCAGTATATCTACAGCAGTGCATGTACAGTATCTTACAGGCTGTCGAGTGGCATCCCTTaGCTGCCCCTGGGACGGGCA | + |
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Preference number: 2 (lower is better) Translates to: ENSFQYIYSSACTVSYRLSSGIP*LPLGRA Trigger: TGCCCGTCCCAGGGGCAGGCAAGGGATGCCACTCGA...CAGCCTGTAAGATACTGTACATGCACTGCTGTAGATATACTGGAATGAATTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR-3UTR CCA 90 bp | GAAAATTCATTCCAGTATATCTACAGCAGTGCATGTACAGTATCTTACAGGCTGAAAAGTCCCCCGCGCTaGCCAGGGTGTCAGAAGGCG | + |
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Preference number: 2 (lower is better) Translates to: ENSFQYIYSSACTVSYRLKSPPR*PGCQKA Trigger: CGCCTTCTGACACCCTGGCCAGCGCGGGGGACTTTT...CAGCCTGTAAGATACTGTACATGCACTGCTGTAGATATACTGGAATGAATTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR-3UTR GCA 90 bp | GAAAATTCATTCCAGTATATCTACAGCAGTGCATGTACAGTATCTTACAGGCTGCAGGTTTGGCTCATATaGTCTTCACAGACCCCCTCC | + |
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Preference number: 2 (lower is better) Translates to: ENSFQYIYSSACTVSYRLQVWLI*SSQTPS Trigger: GGAGGGGGTCTGTGAAGAGCATATGAGCCAAACCTG...CAGCCTGTAAGATACTGTACATGCACTGCTGTAGATATACTGGAATGAATTTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR-3UTR CCA 90 bp | GAAAATTCATTCCAGTATATCTACAGCAGTGCATGTACAGTATCTTACAGGCTGCCAAATGAATGCCAGTaGTCACACGTGCTCTCTCTA | + |
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Preference number: 2 (lower is better) Translates to: ENSFQYIYSSACTVSYRLPNECQ*SHVLSL Trigger: TAGAGAGAGCACGTGTGACCACTGGCATTCATTTGG...CAGCCTGTAAGATACTGTACATGCACTGCTGTAGATATACTGGAATGAATTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CCA 72 bp | ACGGGCAGCCAGCACCAGCAGCCTTTCCTGAGATGGTaGTGGGCGGCAGAGGCGGGCGGCTCGGTCCCCACC | + |
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Preference number: 3 (lower is better) Translates to: TGSQHQQPFLRW*WAAEAGGSVPT Trigger: GGTGGGGACCGAGCCGCCCGCCTCTGCCGCCCACCACCATCTCAGGAAAGGCTGCTGGTGCTGGCTGCCCGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR TCA 72 bp | AGGCGGGCGGCTCGGTCCCCACCCCCTCAGTCACCATaGGTCCTTCAGCCCTCCCTTCCCTGGCTTTCGGGA | + |
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Preference number: 3 (lower is better) Translates to: RRAARSPPPQSP*VLQPSLPWLSG Trigger: TCCCGAAAGCCAGGGAAGGGAGGGCTGAAGGACTCATGGTGACTGAGGGGGTGGGGACCGAGCCGCCCGCCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CCA 72 bp | ATCTCCATCAGTGCACCCAGGCTGCCCGGGCTCGAGTaGCATCCCTTGCCTGCCCCTGGGACGGGCAAGGCT | + |
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Preference number: 3 (lower is better) Translates to: ISISAPRLPGLE*HPLPAPGTGKA Trigger: AGCCTTGCCCGTCCCAGGGGCAGGCAAGGGATGCCACTCGAGCCCGGGCAGCCTGGGTGCACTGATGGAGAT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CCA 72 bp | GCTGCCCGGGCTCGAGTGGCATCCCTTGCCTGCCCCTaGGACGGGCAAGGCTGGCAGTCCAGTATGCTACAT | + |
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Preference number: 3 (lower is better) Translates to: AARARVASLACP*DGQGWQSSMLH Trigger: ATGTAGCATACTGGACTGCCAGCCTTGCCCGTCCCAGGGGCAGGCAAGGGATGCCACTCGAGCCCGGGCAGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CCA 72 bp | GGCATCGTTCACCGCCCGCCGGCGGCTCAGGGAAGATaGCTGGGCACTGGGTTAAGAAGGCCTTCACACGCC | + |
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Preference number: 3 (lower is better) Translates to: GIVHRPPAAQGR*LGTGLRRPSHA Trigger: GGCGTGTGAAGGCCTTCTTAACCCAGTGCCCAGCCATCTTCCCTGAGCCGCCGGCGGGCGGTGAACGATGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR GCA 72 bp | GGACGGGCAAGGCTGGCAGTCCAGTATGCTACATGGTaGAGAAAAAGTCCCCCGCGCTGGCCAGGGTGTCAG | + |
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Preference number: 3 (lower is better) Translates to: GRARLAVQYATW*RKSPPRWPGCQ Trigger: CTGACACCCTGGCCAGCGCGGGGGACTTTTTCTGCACCATGTAGCATACTGGACTGCCAGCCTTGCCCGTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CCA 72 bp | CTGGGACGGGCAAGGCTGGCAGTCCAGTATGCTACATaGTGCAGAAAAAGTCCCCCGCGCTGGCCAGGGTGT | + |
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Preference number: 3 (lower is better) Translates to: LGRARLAVQYAT*CRKSPPRWPGC Trigger: ACACCCTGGCCAGCGCGGGGGACTTTTTCTGCACCATGTAGCATACTGGACTGCCAGCCTTGCCCGTCCCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CCA 72 bp | CGGGCAGAGCACAGGATTCACAGTCTGGACCCCTCCTaGACACCCCCAGATGAAGGTGAGGCAGGCATCGTT | + |
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Preference number: 3 (lower is better) Translates to: RAEHRIHSLDPS*TPPDEGEAGIV Trigger: AACGATGCCTGCCTCACCTTCATCTGGGGGTGTCCAGGAGGGGTCCAGACTGTGAATCCTGTGCTCTGCCCG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CCA 72 bp | GTGGCATCCCTTGCCTGCCCCTGGGACGGGCAAGGCTaGCAGTCCAGTATGCTACATGGTGCAGAAAAAGTC | + |
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Preference number: 3 (lower is better) Translates to: VASLACPWDGQG*QSSMLHGAEKV Trigger: GACTTTTTCTGCACCATGTAGCATACTGGACTGCCAGCCTTGCCCGTCCCAGGGGCAGGCAAGGGATGCCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR-3UTR CAA 90 bp | TGCCAGTGGTCACACGTGCTCTCTCTAAACCTATGCAATGAGATGGATGGGGATCTCGAGTGGCATCCCTaGCCTGCCCCTGGGACGGGC | + |
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Preference number: 3 (lower is better) Translates to: CQWSHVLSLNLCNEMDGDLEWHP*PAPGTG Trigger: GCCCGTCCCAGGGGCAGGCAAGGGATGCCACTCGAG...ATCCCCATCCATCTCATTGCATAGGTTTAGAGAGAGCACGTGTGACCACTGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CCA 72 bp | CCCATTCTCTGGCTCCAGGAGGCTAGTGGTCAGGTTTaGCTCATATGCTCTTCACAGACCCCCTCCTCAGGA | + |
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Preference number: 3 (lower is better) Translates to: PILWLQEASGQV*LICSSQTPSSG Trigger: TCCTGAGGAGGGGGTCTGTGAAGAGCATATGAGCCAAACCTGACCACTAGCCTCCTGGAGCCAGAGAATGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| 3UTR CCA 72 bp | ATATCTACAGCAGTGCATGTACAGTATCTTACAGGCTaGGCCGTCCCTCCCCGCTCCCAGACTCCTCCCTCT | + |
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Preference number: 3 (lower is better) Translates to: ISTAVHVQYLTG*AVPPRSQTPPS Trigger: AGAGGGAGGAGTCTGGGAGCGGGGAGGGACGGCCCAGCCTGTAAGATACTGTACATGCACTGCTGTAGATAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS-3UTR CCA 90 bp | GGGCCTGAGGCCAGGCCCAAAGTGAAGGCGCACTGGGGACACCCCCAGCGTCCCCCGGGGCAGCTTGGGTaGGGCCTCCTGCCAGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: GPEARPKVKAHWGHPQRPPGQLG*GLLPGP Trigger: AGGCCCTGGCAGGAGGCCCCACCCAAGCTGCCCCGG...GGGACGCTGGGGGTGTCCCCAGTGCGCCTTCACTTTGGGCCTGGCCTCAGGCCC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS-3UTR CCA 90 bp | CGTTCACCGCCCGCCGGCGGCTCAGGGAAGATGGCTGGGCACTGGGTTAAGAAGCGGCAGGTGGAGCGGTaGGGGCGCAGAGGTAGGCGG | + |
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Preference number: 4 (lower is better) Translates to: RSPPAGGSGKMAGHWVKKRQVER*GRRGRR Trigger: CCGCCTACCTCTGCGCCCCCACCGCTCCACCTGCCG...CTTCTTAACCCAGTGCCCAGCCATCTTCCCTGAGCCGCCGGCGGGCGGTGAACG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS-3UTR TCA 90 bp | AGGCATCGTTCACCGCCCGCCGGCGGCTCAGGGAAGATGGCTGGGCACTGGGTTGCTCGTACTGCGCGTTaGGGTCGTCCGCCATCCGCC | + |
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Preference number: 4 (lower is better) Translates to: RHRSPPAGGSGKMAGHWVARTAR*GRPPSA Trigger: GGCGGATGGCGGACGACCTCAACGCGCAGTACGAGC...AACCCAGTGCCCAGCCATCTTCCCTGAGCCGCCGGCGGGCGGTGAACGATGCCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS-3UTR CCA 90 bp | AGGCATCGTTCACCGCCCGCCGGCGGCTCAGGGAAGATGGCTGGGCACTGGGTTGGGCTCCAGGATCCCTaGGTAAGGGGAGGAGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: RHRSPPAGGSGKMAGHWVGLQDP*VRGGVP Trigger: TGGGACTCCTCCCCTTACCCAGGGATCCTGGAGCCC...AACCCAGTGCCCAGCCATCTTCCCTGAGCCGCCGGCGGGCGGTGAACGATGCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS-3UTR GCA 90 bp | CGTTCACCGCCCGCCGGCGGCTCAGGGAAGATGGCTGGGCACTGGGTTAAGAAGACGGGCGACTCTAAGTaGTGCTGGGCTGGTGACAGG | + |
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Preference number: 4 (lower is better) Translates to: RSPPAGGSGKMAGHWVKKTGDSK*CWAGDR Trigger: CCTGTCACCAGCCCAGCAGCACTTAGAGTCGCCCGT...CTTCTTAACCCAGTGCCCAGCCATCTTCCCTGAGCCGCCGGCGGGCGGTGAACG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS-3UTR CCA 90 bp | GGCAAGGCTGGCAGTCCAGTATGCTACATGGTGCAGAAAAAGTCCCCCGCGCTGACTCCCGGGGCAGCTTaGGTGGGGCCTCCTGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: GKAGSPVCYMVQKKSPALTPGAA*VGPPAR Trigger: CCTGGCAGGAGGCCCCACCCAAGCTGCCCCGGGAGT...CAGCGCGGGGGACTTTTTCTGCACCATGTAGCATACTGGACTGCCAGCCTTGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS-3UTR GCA 90 bp | TCTACAGCAGTGCATGTACAGTATCTTACAGGCTGGGCCGTCCCTCCCCGCTCCCTCCGCCGCTCGTACTaGGCGTTGAGGTCGTCCGCC | + |
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Preference number: 4 (lower is better) Translates to: STAVHVQYLTGWAVPPRSLRRSY*ALRSSA Trigger: GGCGGACGACCTCAACGCGCAGTACGAGCGGCGGAG...GGAGCGGGGAGGGACGGCCCAGCCTGTAAGATACTGTACATGCACTGCTGTAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS-3UTR GCA 90 bp | CCATTCTCTGGCTCCAGGAGGCTAGTGGTCAGGTTTGGCTCATATGCTCTTCACTTGGGTGGGGCCTCCTaGCAGGGCCTCCGGGGCGCT | + |
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Preference number: 4 (lower is better) Translates to: PFSGSRRLVVRFGSYALHLGGAS*QGLRGA Trigger: AGCGCCCCGGAGGCCCTGGCAGGAGGCCCCACCCAA...GTGAAGAGCATATGAGCCAAACCTGACCACTAGCCTCCTGGAGCCAGAGAATGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS-3UTR CCA 90 bp | CCATTCTCTGGCTCCAGGAGGCTAGTGGTCAGGTTTGGCTCATATGCTCTTCACGGCGGTGACGGCAGGTaGAGCGGTGGGGGCGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: PFSGSRRLVVRFGSYALHGGDGR*SGGGAE Trigger: CTCTGCGCCCCCACCGCTCCACCTGCCGTCACCGCC...GTGAAGAGCATATGAGCCAAACCTGACCACTAGCCTCCTGGAGCCAGAGAATGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS-3UTR TCA 90 bp | TGGCTCCAGGAGGCTAGTGGTCAGGTTTGGCTCATATGCTCTTCACAGACCCCCCATGACCCTCCAGGGTaGGGGTCGGTGTCGATGCTG | + |
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Preference number: 4 (lower is better) Translates to: WLQEASGQVWLICSSQTPHDPPG*GSVSML Trigger: CAGCATCGACACCGACCCTCACCCTGGAGGGTCATG...GGGGGTCTGTGAAGAGCATATGAGCCAAACCTGACCACTAGCCTCCTGGAGCCA 60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS-3UTR GCA 90 bp | TCTACAGCAGTGCATGTACAGTATCTTACAGGCTGGGCCGTCCCTCCCCGCTCCGGCGACTCTAAGTGCTaGTGGGCTGGTGACAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: STAVHVQYLTGWAVPPRSGDSKC*WAGDRE Trigger: CTCCCTGTCACCAGCCCAGCAGCACTTAGAGTCGCC...GGAGCGGGGAGGGACGGCCCAGCCTGTAAGATACTGTACATGCACTGCTGTAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS-3UTR CCA 90 bp | GAGCACAGGATTCACAGTCTGGACCCCTCCTGGACACCCCCAGATGAAGGTGAGGACTCTAAGTGCTGCTaGGCTGGTGACAGGGAGGGC | + |
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Preference number: 4 (lower is better) Translates to: EHRIHSLDPSWTPPDEGEDSKCC*AGDREG Trigger: GCCCTCCCTGTCACCAGCCCAGCAGCACTTAGAGTC...CTCACCTTCATCTGGGGGTGTCCAGGAGGGGTCCAGACTGTGAATCCTGTGCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS CCA 90 bp | CGCCGCTCGTACTGCGCGTTGAGGTCGTCCGCCATCCGCCGCAGCTaGGCCCCGATCTCCCGGGCCCACTCCTCCTCCTCCACACGCACT | + |
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Preference number: 5 (lower is better) Translates to: RRSYCALRSSAIRRS*APISRAHSSSSTRT Trigger: AGTGCGTGTGGAGGAGGAGGAGTGGGCCCGGGAGATCGGGGCCCAGCTGCGGCGGATGGCGGACGACCTCAACGCGCAGTACGAGCGGCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS TCA 90 bp | GGTGTCGATGCTGCTCTTCTTGTCTCCGCCGCTCGTACTGCGCGTTaGGGTCGTCCGCCATCCGCCGCAGCTGGGCCCCGATCTCCCGGG | + |
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Preference number: 5 (lower is better) Translates to: GVDAALLVSAARTAR*GRPPSAAAGPRSPG Trigger: CCCGGGAGATCGGGGCCCAGCTGCGGCGGATGGCGGACGACCTCAACGCGCAGTACGAGCGGCGGAGACAAGAAGAGCAGCATCGACACC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS GCA 90 bp | GAGGGTCGGTGTCGATGCTGCTCTTCTTGTCTCCGCCGCTCGTACTaGGCGTTGAGGTCGTCCGCCATCCGCCGCAGCTGGGCCCCGATC | + |
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Preference number: 5 (lower is better) Translates to: EGRCRCCSSCLRRSY*ALRSSAIRRSWAPI Trigger: GATCGGGGCCCAGCTGCGGCGGATGGCGGACGACCTCAACGCGCAGTACGAGCGGCGGAGACAAGAAGAGCAGCATCGACACCGACCCTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS-3UTR CAA 90 bp | GTCCAGTATGCTACATGGTGCAGAAAAAGTCCCCCGCGCTGGCCAGGGTGTCAGCGCTCGTACTGCGCGTaGAGGTCGTCCGCCATCCGC | + |
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Preference number: 5 (lower is better) Translates to: VQYATWCRKSPPRWPGCQRSYCA*RSSAIR Trigger: GCGGATGGCGGACGACCTCAACGCGCAGTACGAGCG...CTGACACCCTGGCCAGCGCGGGGGACTTTTTCTGCACCATGTAGCATACTGGAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS-3UTR CAA 90 bp | GAAAATTCATTCCAGTATATCTACAGCAGTGCATGTACAGTATCTTACAGGCTGCACTCCCGGGGCAGCTaGGGTGGGGCCTCCTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: ENSFQYIYSSACTVSYRLHSRGS*GGASCQ Trigger: CTGGCAGGAGGCCCCACCCAAGCTGCCCCGGGAGTG...CAGCCTGTAAGATACTGTACATGCACTGCTGTAGATATACTGGAATGAATTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS TCA 72 bp | GACTCTAAGTGCTGCTGGGCTGGTGACAGGGAGGGCTaGGGACCGTCCGGGCGCGGGCCTCTGGGCCGGCTG | + |
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Preference number: 6 (lower is better) Translates to: DSKCCWAGDREG*GPSGRGPLGRL Trigger: CAGCCGGCCCAGAGGCCCGCGCCCGGACGGTCCTCAGCCCTCCCTGTCACCAGCCCAGCAGCACTTAGAGTC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002152.13 ENSMUST00000136781.2 |
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| CDS CCA 72 bp | TACTGCGCGTTGAGGTCGTCCGCCATCCGCCGCAGCTaGGCCCCGATCTCCCGGGCCCACTCCTCCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: YCALRSSAIRRS*APISRAHSSSS Trigger: GGAGGAGGAGGAGTGGGCCCGGGAGATCGGGGCCCAGCTGCGGCGGATGGCGGACGACCTCAACGCGCAGTA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS CAA 90 bp | CGGTGTCGATGCTGCTCTTCTTGTCTCCGCCGCTCGTACTGCGCGTaGAGGTCGTCCGCCATCCGCCGCAGCTGGGCCCCGATCTCCCGG | + |
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Preference number: 6 (lower is better) Translates to: RCRCCSSCLRRSYCA*RSSAIRRSWAPISR Trigger: CCGGGAGATCGGGGCCCAGCTGCGGCGGATGGCGGACGACCTCAACGCGCAGTACGAGCGGCGGAGACAAGAAGAGCAGCATCGACACCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS TCA 72 bp | GCTGCTCTTCTTGTCTCCGCCGCTCGTACTGCGCGTTaGGGTCGTCCGCCATCCGCCGCAGCTGGGCCCCGA | + |
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Preference number: 6 (lower is better) Translates to: AALLVSAARTAR*GRPPSAAAGPR Trigger: TCGGGGCCCAGCTGCGGCGGATGGCGGACGACCTCAACGCGCAGTACGAGCGGCGGAGACAAGAAGAGCAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS CAA 72 bp | TGCTGCTCTTCTTGTCTCCGCCGCTCGTACTGCGCGTaGAGGTCGTCCGCCATCCGCCGCAGCTGGGCCCCG | + |
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Preference number: 6 (lower is better) Translates to: CCSSCLRRSYCA*RSSAIRRSWAP Trigger: CGGGGCCCAGCTGCGGCGGATGGCGGACGACCTCAACGCGCAGTACGAGCGGCGGAGACAAGAAGAGCAGCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS GCA 72 bp | TGTCGATGCTGCTCTTCTTGTCTCCGCCGCTCGTACTaGGCGTTGAGGTCGTCCGCCATCCGCCGCAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: CRCCSSCLRRSY*ALRSSAIRRSW Trigger: CCAGCTGCGGCGGATGGCGGACGACCTCAACGCGCAGTACGAGCGGCGGAGACAAGAAGAGCAGCATCGACA 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS GCA 72 bp | TACATGACCCTCCAGGGTGAGGGTCGGTGTCGATGCTaGTCTTCTTGTCTCCGCCGCTCGTACTGCGCGTTG | + |
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Preference number: 6 (lower is better) Translates to: YMTLQGEGRCRC*SSCLRRSYCAL Trigger: CAACGCGCAGTACGAGCGGCGGAGACAAGAAGAGCAGCATCGACACCGACCCTCACCCTGGAGGGTCATGTA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS GCA 72 bp | TTGTACATGACCCTCCAGGGTGAGGGTCGGTGTCGATaGTGCTCTTCTTGTCTCCGCCGCTCGTACTGCGCG | + |
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Preference number: 6 (lower is better) Translates to: LYMTLQGEGRCR*CSSCLRRSYCA Trigger: CGCGCAGTACGAGCGGCGGAGACAAGAAGAGCAGCATCGACACCGACCCTCACCCTGGAGGGTCATGTACAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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| CDS CAA 90 bp | GGGGCTCCAGGATCCCTGGGTAAGGGGAGGAGTCCCATGAAGAGATaGTACATGACCCTCCAGGGTGAGGGTCGGTGTCGATGCTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: GAPGSLGKGRSPMKR*YMTLQGEGRCRCCS Trigger: AGAGCAGCATCGACACCGACCCTCACCCTGGAGGGTCATGTACAATCTCTTCATGGGACTCCTCCCCTTACCCAGGGATCCTGGAGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002152.13 |
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