RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BAZ2B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026987

Ensembl transcript IDs: ENSMUST00000090925.13, ENSMUST00000112550.8, ENSMUST00000130637.2, ENSMUST00000153136.2

Found 537 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGAGAACCGTTCCCCACGTTAGAGCTCTGGTGTTGGCTATTCAGTaGGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTT +
Preference number: 1 (lower is better)
Translates to: RRTVPHVRALVLAIQ*GLIEFRCYCTMTPF
Trigger: AAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAGAGCTCTAACGTGGGGAACGGTTCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR GCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTaGACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTC +
Preference number: 1 (lower is better)
Translates to: LVLAIQCGLIEFRCY*TMTPFPWKTLWVRF
Trigger: GAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR GCA 90 bp AGAGCTCTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTaGTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTG +
Preference number: 1 (lower is better)
Translates to: RALVLAIQCGLIEFR*YCTMTPFPWKTLWV
Trigger: CACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAGAGCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR GCA 90 bp TTAAGGAAAAAGTTAATATGCATGTGCCTTGCACATCTGTGTGAATaGAGTTCACACCGCTGGTCTTGTTTGTCCTTGTTTAAAAGGAAA +
Preference number: 1 (lower is better)
Translates to: LRKKLICMCLAHLCE*SSHRWSCLSLFKRK
Trigger: TTTCCTTTTAAACAAGGACAAACAAGACCAGCGGTGTGAACTGCATTCACACAGATGTGCAAGGCACATGCATATTAACTTTTTCCTTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGAGTCACACAAACCAGTaGCCAATGGGCTCGGCTGGA +
Preference number: 2 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITSHTNQ*PMGSAG
Trigger: TCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR CCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGACCAATGGGCTCGGCTaGAGGAGTGAAGCCTCTAAA +
Preference number: 2 (lower is better)
Translates to: WVRFPVLPKLADESHKPVTNGLG*RSEASK
Trigger: TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGT...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR CAA 90 bp ACCGTTCCCCACGTTAGAGCTCTGGTGTTGGCTATTCAGTGCGGTTaGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGG +
Preference number: 2 (lower is better)
Translates to: TVPHVRALVLAIQCG*IEFRCYCTMTPFPW
Trigger: CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAGAGCTCTAACGTGGGGAACGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR TCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGAGTCACACAAACCAGTaGCCAATGGGCTCGGCTGGA +
Preference number: 2 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMSHTNQ*PMGSAG
Trigger: TCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACT...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR CCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTTGCAGTTCACACCGCTaGTCTTGTTTGTCCTTGTTT +
Preference number: 2 (lower is better)
Translates to: VTNGLGWRSEASKTGVILCSSHR*SCLSLF
Trigger: AAACAAGGACAAACAAGACCAGCGGTGTGAACTGCA...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR CCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTACCAATGGGCTCGGCTaGAGGAGTGAAGCCTCTAAA +
Preference number: 2 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVTNGLG*RSEASK
Trigger: TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGT...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR CCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGCCCACGTTAGAGCTCTaGTGTTGGCTATTCAGTGCG +
Preference number: 2 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITPTLEL*CWLFSA
Trigger: CGCACTGAATAGCCAACACCAGAGCTCTAACGTGGG...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR CAA 90 bp ATTGAGAGGGAAAGGAGAACCGTTCCCCACGTTAGAGCTCTGGTGTaGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACT +
Preference number: 2 (lower is better)
Translates to: IERERRTVPHVRALV*AIQCGLIEFRCYCT
Trigger: AGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAGAGCTCTAACGTGGGGAACGGTTCTCCTTTCCCTCTCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR CCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGATGACACCCTTTCCTTaGAAAACTCTTTGGGTGCGC +
Preference number: 2 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITMTPFP*KTLWVR
Trigger: GCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCAT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR CAA 90 bp TCTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATaGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTT +
Preference number: 2 (lower is better)
Translates to: SGVGYSVRFDRVSLL*HYDTLSLENSLGAL
Trigger: AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR CCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTGCAGTTCACACCGCTaGTCTTGTTTGTCCTTGTTT +
Preference number: 2 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVCSSHR*SCLSLF
Trigger: AAACAAGGACAAACAAGACCAGCGGTGTGAACTGCA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGGTTGCTATTGCACTATaGCACCCTTTCCTTGGAAAA +
Preference number: 2 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITVAIAL*HPFLGK
Trigger: TTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAAC...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR GCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGCAGACTCAGATAAAATaGTACAGTCCTTCTAAGGCA +
Preference number: 2 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITQTQIK*YSPSKA
Trigger: TGCCTTAGAAGGACTGTAGCATTTTATCTGAGTCTG...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR GCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTAAGTTAATATGCATGTaGCTTGCACATCTGTGTGAA +
Preference number: 2 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVKLICM*LAHLCE
Trigger: TTCACACAGATGTGCAAGGCACATGCATATTAACTT...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR GCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTAGGAAAAAGTTAATATaGATGTGCCTTGCACATCTG +
Preference number: 2 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVRKKLI*MCLAHL
Trigger: CAGATGTGCAAGGCACATGCATATTAACTTTTTCCT...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR CCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACCTTGGAAAACTCTTTaGGTGCGCTTCCCTGTTCTA +
Preference number: 2 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQPWKTL*VRFPVL
Trigger: TAGAACAGGGAAGCGCACCCAAAGAGTTTTCCAAGG...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR CCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGAGTAAAGGTTATTTTTaGTGCTTTCTGAGCACATCA +
Preference number: 2 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITSKGYF*CFLSTS
Trigger: TGATGTGCTCAGAAAGCACCAAAAATAACCTTTACT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR GCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATGAGTTTCGTTGCTATTaGACTATGACACCCTTTCCT +
Preference number: 2 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHEFRCY*TMTPFP
Trigger: AGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTC...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR GCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATAGGAAAAAGTTAATATaGATGTGCCTTGCACATCTG +
Preference number: 2 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHRKKLI*MCLAHL
Trigger: CAGATGTGCAAGGCACATGCATATTAACTTTTTCCT...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR CCA 72 bp GATGAGTCACACAAACCAGTGACCAATGGGCTCGGCTaGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTT +
Preference number: 3 (lower is better)
Translates to: DESHKPVTNGLG*RSEASKTGVIL
Trigger: AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR GCA 72 bp GTTCCCCACGTTAGAGCTCTGGTGTTGGCTATTCAGTaGGGTTTGATAGAGTTTCGTTGCTATTGCACTATG +
Preference number: 3 (lower is better)
Translates to: VPHVRALVLAIQ*GLIEFRCYCTM
Trigger: CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAGAGCTCTAACGTGGGGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR CAA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCACCGCTGGTCTTGTTaGTCCTTGTTTAAAAGGAAA +
Preference number: 3 (lower is better)
Translates to: SLLLHYDTLSLENSLGALHRWSC*SLFKRK
Trigger: TTTCCTTTTAAACAAGGACAAACAAGACCAGCGGTG...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR CCA 72 bp TGCCTTGCACATCTGTGTGAATGCAGTTCACACCGCTaGTCTTGTTTGTCCTTGTTTAAAAGGAAAAAGGAG +
Preference number: 3 (lower is better)
Translates to: CLAHLCECSSHR*SCLSLFKRKKE
Trigger: CTCCTTTTTCCTTTTAAACAAGGACAAACAAGACCAGCGGTGTGAACTGCATTCACACAGATGTGCAAGGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR TCA 72 bp GAAAAAGTTAATATGCATGTGCCTTGCACATCTGTGTaGATGCAGTTCACACCGCTGGTCTTGTTTGTCCTT +
Preference number: 3 (lower is better)
Translates to: EKVNMHVPCTSV*MQFTPLVLFVL
Trigger: AAGGACAAACAAGACCAGCGGTGTGAACTGCATTCACACAGATGTGCAAGGCACATGCATATTAACTTTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR GCA 72 bp GCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTaGACTATGACACCCTTTCCTTGGAAAACTCTTTGG +
Preference number: 3 (lower is better)
Translates to: AIQCGLIEFRCY*TMTPFPWKTLW
Trigger: CCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR GCA 72 bp GTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTaGTATTGCACTATGACACCCTTTCCTTGGAAAACT +
Preference number: 3 (lower is better)
Translates to: VLAIQCGLIEFR*YCTMTPFPWKT
Trigger: AGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR CAA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTGGTCTTGTTTGTCCTaGTTTAAAAGGAAAAAGGAG +
Preference number: 3 (lower is better)
Translates to: SLLLHYDTLSLENSLGALWSCLS*FKRKKE
Trigger: CTCCTTTTTCCTTTTAAACAAGGACAAACAAGACCA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR CAA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTGGTCTTGTTTGTCCTaGTTTAAAAGGAAAAAGGAG +
Preference number: 3 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVWSCLS*FKRKKE
Trigger: CTCCTTTTTCCTTTTAAACAAGGACAAACAAGACCA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR-3UTR CAA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTCCTTGGAAAACTCTTaGGGTGCGCTTCCCTGTTCT +
Preference number: 3 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHSLENS*GALPCS
Trigger: AGAACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR TCA 72 bp AACTTCAAGTACTTTTACATAGGTACAAAAGAACTCTaGTCTATGTGCCTCCAACAGGCCACAACACACAGT +
Preference number: 3 (lower is better)
Translates to: NFKYFYIGTKEL*SMCLQQATTHS
Trigger: ACTGTGTGTTGTGGCCTGTTGGAGGCACATAGATCAGAGTTCTTTTGTACCTATGTAAAAGTACTTGAAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112550.8
3UTR GCA 72 bp TTCTTAAATATACGTGTGTGTGTGTGTGTGTGTGTGTaGACATGTACACATATGTACACATACACACACACA +
Preference number: 3 (lower is better)
Translates to: FLNIRVCVCVCV*TCTHMYTYTHT
Trigger: TGTGTGTGTGTATGTGTACATATGTGTACATGTGCACACACACACACACACACACACACGTATATTTAAGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAGGCAGAGGGCAGCGCTaGAGTCTGACTGCCAGGGGC +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKGRGQR*SLTARG
Trigger: GCCCCTGGCAGTCAGACTCCAGCGCTGCCCTCTGCC...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGCAAGGCCGCGGCCGCTaGCGCCGGATGGGGGTGATG +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVQGRGR*RRMGVM
Trigger: CATCACCCCCATCCGGCGGCAGCGGCCGCGGCCTTG...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAACACTGCTGTGCAGGATaGGCGAGGCAGAGGGCAGCG +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKHCCAG*ARQRAA
Trigger: CGCTGCCCTCTGCCTCGCCCATCCTGCACAGCAGTG...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAATGGCAGTCCCAACCCTaGGCCGAGAGCAGGCAAAGG +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKWQSQP*AESRQR
Trigger: CCTTTGCCTGCTCTCGGCTCAGGGTTGGGACTGCCA...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCAAGGCCGCGGCCGCTaGCGCCGGATGGGGGTGATG +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALQGRGR*RRMGVM
Trigger: CATCACCCCCATCCGGCGGCAGCGGCCGCGGCCTTG...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAGAGGTCAATGCCCCCTaGGGCGTCTCTCTTGCCTGT +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKEVNAP*GVSLAC
Trigger: ACAGGCAAGAGAGACGCCTCAGGGGGCATTGACCTC...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGGGCAGAGGGCAGCGCTaGAGTCTGACTGCCAGGGGC +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVGRGQR*SLTARG
Trigger: GCCCCTGGCAGTCAGACTCCAGCGCTGCCCTCTGCC...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGGGCAGCGCTGGAGTCTaGCTGCCAGGGGCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWGSAGV*LPGALL
Trigger: GAGGAGAGCCCCTGGCAGTCAGACTCCAGCGCTGCC...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTGTGGAGGTGAGGTGCTaGGTGCGCTGTGAGACTGGA +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILVEVRC*VRCETG
Trigger: TCCAGTCTCACAGCGCACTCAGCACCTCACCTCCAC...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAACTGGGACTGGAATGGTaGGTGCGTCTGGGACTCAGA +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKLGLEW*VRLGLR
Trigger: TCTGAGTCCCAGACGCACCCACCATTCCAGTCCCAG...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAGCAGAGGAGCTTGTCTaGGTCAGGTTCACGGCAGGT +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKAEELV*VRFTAG
Trigger: ACCTGCCGTGAACCTGACCCAGACAAGCTCCTCTGC...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTCTCCGCTTGCGTCCTaGCGTGGGCGTGCCCAAGGG +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWSPLAS*RGRAQG
Trigger: CCCTTGGGCACGCCCACGCCAGGACGCAAGCGGAGA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGGGCAGCGCTGGAGTCTaGCTGCCAGGGGCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMGSAGV*LPGALL
Trigger: GAGGAGAGCCCCTGGCAGTCAGACTCCAGCGCTGCC...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAGGTCCTCGGGGTCAATaGTTCTCCACCATCCGAACT +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKGPRGQ*FSTIRT
Trigger: AGTTCGGATGGTGGAGAATCATTGACCCCGAGGACC...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGGCGCTGGAGTCTGACTaGCAGGGGCTCTCCTCCCAC +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITALESD*QGLSSH
Trigger: GTGGGAGGAGAGCCCCTGGCAGTCAGACTCCAGCGC...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAACATAGTCCAGAGGGATaGGCAGCTCCTGATCGTCTG +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKHSPEG*AAPDRL
Trigger: CAGACGATCAGGAGCTGCGCATCCCTCTGGACTATG...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAATAAGCATCACATGCTaGCGCCTTCGCTCCCGTTCC +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKISITC*RLRSRS
Trigger: GGAACGGGAGCGAAGGCGGCAGCATGTGATGCTTAT...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGGCACAAGTCCCGGGATaGGAGGCCACTCTGGCAAGG +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVAQVPG*EATLAR
Trigger: CCTTGCCAGAGTGGCCTCGCATCCCGGGACTTGTGC...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAGTCCTCCCTTTCCGATaGAGGCTCTGGACACATCCA +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKVLPFR*RLWTHP
Trigger: TGGATGTGTCCAGAGCCTGCATCGGAAAGGGAGGAC...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAACAGTCAGGATCATACTaGAGAGAGCCAGGTCCCTGG +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKQSGSY*REPGPW
Trigger: CCAGGGACCTGGCTCTCTGCAGTATGATCCTGACTG...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAACTCTTCCAGATCGTCTaGGTCACTGCTGCTAATGCC +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKLFQIV*VTAANA
Trigger: GGCATTAGCAGCAGTGACTCAGACGATCTGGAAGAG...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTGGCAGTCCCAACCCTaGGCCGAGAGCAGGCAAAGG +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWWQSQP*AESRQR
Trigger: CCTTTGCCTGCTCTCGGCTCAGGGTTGGGACTGCCA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTGGTCCTCGGGGTCAATaGTTCTCCACCATCCGAACT +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILGPRGQ*FSTIRT
Trigger: AGTTCGGATGGTGGAGAATCATTGACCCCGAGGACC...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAACACTTGCAAACTCGCTaGTGCAACCCTCCGTTCCAA +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKHLQTR*CNPPFQ
Trigger: TTGGAACGGAGGGTTGCATCAGCGAGTTTGCAAGTG...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTACCATGTCAGGGCACTaGCTCAGCTTCTTCCCACAC +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILTMSGH*LSFFPH
Trigger: GTGTGGGAAGAAGCTGAGGCAGTGCCCTGACATGGT...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTGCACAAGTCCCGGGATaGGAGGCCACTCTGGCAAGG +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALAQVPG*EATLAR
Trigger: CCTTGCCAGAGTGGCCTCGCATCCCGGGACTTGTGC...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAATCGTGATTCTGGGCTaGAGGAGCAAACAGTGGTGG +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKIVILG*RSKQWW
Trigger: CCACCACTGTTTGCTCCTCCAGCCCAGAATCACGAT...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTCTTCGCTCCCGTTCCTaGTGTTTCAGAAGGACAGCC +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILLRSRS*CFRRTA
Trigger: GGCTGTCCTTCTGAAACACCAGGAACGGGAGCGAAG...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGGCTTGCGTCCTGGCGTaGGCGTGCCCAAGGGGTGTT +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMACVLA*ACPRGV
Trigger: AACACCCCTTGGGCACGCCCACGCCAGGACGCAAGC...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTCTGTCCCATGGAACTTaGAGCAGGAGTGGCTACTAC +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILLSHGT*SRSGYY
Trigger: GTAGTAGCCACTCCTGCTTCAAGTTCCATGGGACAG...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTGCCTCGAGAATCTGCTaGGCTCTCAGTTCTTTCTCC +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILASRIC*ALSSFS
Trigger: GGAGAAAGAACTGAGAGCTCAGCAGATTCTCGAGGC...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTGAGGTCAATGCCCCCTaGGGCGTCTCTCTTGCCTGT +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVEVNAP*GVSLAC
Trigger: ACAGGCAAGAGAGACGCCTCAGGGGGCATTGACCTC...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGTTGTGCTGTTGTTGCTaGGGGAACGCTCCCCAGTGG +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVLCCCC*GNAPQW
Trigger: CCACTGGGGAGCGTTCCCTCAGCAACAACAGCACAA...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGTGGGGCCGGCGAAGGTaGCTTAGATGGTGGCTGAGA +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITWGRRR*LRWWLR
Trigger: TCTCAGCCACCATCTAAGTCACCTTCGCCGGCCCCA...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTTCCAGCTCCATTGCTTaGTCTTCGACCGACCAGTTC +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILSSSIA*SSTDQF
Trigger: GAACTGGTCGGTCGAAGAGCAAGCAATGGAGCTGGA...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGATGCACAGGGCTACCTaGGCAGCACTGCGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVMHRAT*AALRAS
Trigger: AGAAGCTCGCAGTGCTGCGCAGGTAGCCCTGTGCAT...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGTGCTTCTGCTGGGACTaGAATGGTGGGTGCGTCTGG +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVCFCWD*NGGCVW
Trigger: CCAGACGCACCCACCATTCCAGTCCCAGCAGAAGCA...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGGCAGAGGAGCTTGTCTaGGTCAGGTTCACGGCAGGT +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVAEELV*VRFTAG
Trigger: ACCTGCCGTGAACCTGACCCAGACAAGCTCCTCTGC...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGGATGCGAGGCCACTCTaGCAAGGGCTTTTGGTCTGC +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVDARPL*QGLLVC
Trigger: GCAGACCAAAAGCCCTTGCCAGAGTGGCCTCGCATC...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCACTGGCTGAGCGCTaGAGGGTCTTTCAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALPLAER*RVFQLE
Trigger: CTCCAGCTGAAAGACCCTCCAGCGCTCAGCCAGTGG...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTCCACTGGCTGAGCGCTaGAGGGTCTTTCAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVPLAER*RVFQLE
Trigger: CTCCAGCTGAAAGACCCTCCAGCGCTCAGCCAGTGG...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTGGAAGGAGCAGAAGATaGTGTTGGTGTAGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILGRSRR*CWCSGG
Trigger: TCCTCCACTACACCAACATCATCTTCTGCTCCTTCC...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTGCTGTGAGAGAACCTaGGGCTGCTTCTGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALCCERT*GCFCWD
Trigger: GTCCCAGCAGAAGCAGCCTCAGGTTCTCTCACAGCA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTGCTGTGAGAGAACCTaGGGCTGCTTCTGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWCCERT*GCFCWD
Trigger: GTCCCAGCAGAAGCAGCCTCAGGTTCTCTCACAGCA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGGCTCAGATTGACAGGTaGGGAGAACGGGGTGCTACT +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVAQIDR*GERGAT
Trigger: AGTAGCACCCCGTTCTCCTCACCTGTCAATCTGAGC...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTACTGGGAACGTCTaGATCTGTCCCTCTAAACTG +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKTTGNV*ICPSKL
Trigger: CAGTTTAGAGGGACAGATTCAGACGTTCCCAGTAGT...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGCCCTTCTCCAGACCCTaGGCCCTGGAGCAATATCCT +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITPFSRP*ALEQYP
Trigger: AGGATATTGCTCCAGGGCTCAGGGTCTGGAGAAGGG...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGGACTGGAATGGTGGGTaGGTCTGGGACTCAGACACA +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVDWNGG*VWDSDT
Trigger: TGTGTCTGAGTCCCAGACGCACCCACCATTCCAGTC...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTGCTTTTCCTTCCCACTaGTGTGCAGGATGGGCGAGG +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALAFPSH*CAGWAR
Trigger: CCTCGCCCATCCTGCACAGCAGTGGGAAGGAAAAGC...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTGCTTTTCCTTCCCACTaGTGTGCAGGATGGGCGAGG +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVAFPSH*CAGWAR
Trigger: CCTCGCCCATCCTGCACAGCAGTGGGAAGGAAAAGC...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGCATAGTCCAGAGGGATaGGCAGCTCCTGATCGTCTG +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVHSPEG*AAPDRL
Trigger: CAGACGATCAGGAGCTGCGCATCCCTCTGGACTATG...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAACCTGGATTCCTCTCTTaGTCTGGGTCTATCTGGATT +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKPGFLS*SGSIWI
Trigger: AATCCAGATAGACCCAGAGCAAGAGAGGAATCCAGG...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTCAGTCAGCTCAGTCTaGCCACAGTGGGCCTCCATG +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVSVSSV*PQWASM
Trigger: CATGGAGGCCCACTGTGGGCAGACTGAGCTGACTGA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAATCCAACCCTTCACTTaGAAACTCGCTGATGCAACC +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKIQPFT*KLADAT
Trigger: GGTTGCATCAGCGAGTTTGCAAGTGAAGGGTTGGAT...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTTTCCGAGCCAGTGCATaGGCACTGTTTTCTTCGTCA +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILFRASA*ALFSSS
Trigger: TGACGAAGAAAACAGTGCGCATGCACTGGCTCGGAA...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTATGCACAGGGCTACCTaGGCAGCACTGCGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALMHRAT*AALRAS
Trigger: AGAAGCTCGCAGTGCTGCGCAGGTAGCCCTGTGCAT...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGCAGTCAGGATCATACTaGAGAGAGCCAGGTCCCTGG +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVQSGSY*REPGPW
Trigger: CCAGGGACCTGGCTCTCTGCAGTATGATCCTGACTG...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTGAGAGTGGCCATCTGTaGTTCGCCACCACTCTGCAC +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVESGHL*FATTLH
Trigger: GTGCAGAGTGGTGGCGAACCACAGATGGCCACTCTC...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGTGCTTCTGCTGGGACTaGAATGGTGGGTGCGTCTGG +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITCFCWD*NGGCVW
Trigger: CCAGACGCACCCACCATTCCAGTCCCAGCAGAAGCA...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTGGAGGGAGGGCTTTTaGCAGAGGAGCTTGTCTGGG +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALWREGF*QRSLSG
Trigger: CCCAGACAAGCTCCTCTGCCAAAAGCCCTCCCTCCA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAATCAGTTCTTTCTCCTTaGTTCGTTTCTCGGCCTCCA +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKSVLSP*FVSRPP
Trigger: TGGAGGCCGAGAAACGAACCAAGGAGAAAGAACTGA...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTGATGCGAGGCCACTCTaGCAAGGGCTTTTGGTCTGC +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALDARPL*QGLLVC
Trigger: GCAGACCAAAAGCCCTTGCCAGAGTGGCCTCGCATC...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTCCAGACCCTGAGCCCTaGAGCAATATCCTCTTCAAT +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILPDPEP*SNILFN
Trigger: ATTGAAGAGGATATTGCTCCAGGGCTCAGGGTCTGG...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGCTGTCCCATGGAACTTaGAGCAGGAGTGGCTACTAC +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVLSHGT*SRSGYY
Trigger: GTAGTAGCCACTCCTGCTTCAAGTTCCATGGGACAG...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAATTGTGCTTCAGTCTCTaGGTCAGAATCGTCATCTTC +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKLCFSL*VRIVIF
Trigger: GAAGATGACGATTCTGACTCAGAGACTGAAGCACAA...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTGCTCAGATTGACAGGTaGGGAGAACGGGGTGCTACT +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALAQIDR*GERGAT
Trigger: AGTAGCACCCCGTTCTCCTCACCTGTCAATCTGAGC...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAACTCCTCATCCTCATTTaGGTCCTCAGAGTCTTTACT +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKLLILI*VLRVFT
Trigger: AGTAAAGACTCTGAGGACTCAAATGAGGATGAGGAG...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGTTGTGCTGTTGTTGCTaGGGGAACGCTCCCCAGTGG +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMLCCCC*GNAPQW
Trigger: CCACTGGGGAGCGTTCCCTCAGCAACAACAGCACAA...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTGACTGGAATGGTGGGTaGGTCTGGGACTCAGACACA +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALDWNGG*VWDSDT
Trigger: TGTGTCTGAGTCCCAGACGCACCCACCATTCCAGTC...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTACCATGTCAGGGCACTaGCTCAGCTTCTTCCCACAC +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALTMSGH*LSFFPH
Trigger: GTGTGGGAAGAAGCTGAGGCAGTGCCCTGACATGGT...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGATAAGCATCACATGCTaGCGCCTTCGCTCCCGTTCC +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITISITC*RLRSRS
Trigger: GGAACGGGAGCGAAGGCGGCAGCATGTGATGCTTAT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGTCAGTCAGCTCAGTCTaGCCACAGTGGGCCTCCATG +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMSVSSV*PQWASM
Trigger: CATGGAGGCCCACTGTGGGCAGACTGAGCTGACTGA...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGCCACCTGCTGGAGTATaGTCAGGTCCAGCTCCATTG +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITPPAGV*SGPAPL
Trigger: CAATGGAGCTGGACCTGAGCATACTCCAGCAGGTGG...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTCCACCTGCTGGAGTATaGTCAGGTCCAGCTCCATTG +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVPPAGV*SGPAPL
Trigger: CAATGGAGCTGGACCTGAGCATACTCCAGCAGGTGG...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTATCCAACCCTTCACTTaGAAACTCGCTGATGCAACC +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILIQPFT*KLADAT
Trigger: GGTTGCATCAGCGAGTTTGCAAGTGAAGGGTTGGAT...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGGAGAGTGGCCATCTGTaGTTCGCCACCACTCTGCAC +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMESGHL*FATTLH
Trigger: GTGCAGAGTGGTGGCGAACCACAGATGGCCACTCTC...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTACAAAGGTTTCACATTaGACACCAGTCCCGTCGACT +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILTKVSH*TPVPST
Trigger: AGTCGACGGGACTGGTGTCCAATGTGAAACCTTTGT...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGTCTATCTGGATTGGGTaGTCTTCCTCTTCGGCCGTC +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVSIWIG*SSSSAV
Trigger: GACGGCCGAAGAGGAAGACCACCCAATCCAGATAGA...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGTCCGGCGTTTCATCCTaGATTCCTCTCTTGCTCTGG +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVSGVSS*IPLLLW
Trigger: CCAGAGCAAGAGAGGAATCCAGGATGAAACGCCGGA...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGCTTCGCTCCCGTTCCTaGTGTTTCAGAAGGACAGCC +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWLRSRS*CFRRTA
Trigger: GGCTGTCCTTCTGAAACACCAGGAACGGGAGCGAAG...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGGGACGCTTTCTGTGCTaGAGTGTGAGCCTGGAAAGC +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITGRFLC*SVSLES
Trigger: GCTTTCCAGGCTCACACTCCAGCACAGAAAGCGTCC...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTGGACGCTTTCTGTGCTaGAGTGTGAGCCTGGAAAGC +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALGRFLC*SVSLES
Trigger: GCTTTCCAGGCTCACACTCCAGCACAGAAAGCGTCC...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAGCTTGCGTCCTGGCGTaGGCGTGCCCAAGGGGTGTT +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQACVLA*ACPRGV
Trigger: AACACCCCTTGGGCACGCCCACGCCAGGACGCAAGC...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTCTCCGCTTGCGTCCTaGCGTGGGCGTGCCCAAGGG +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHSPLAS*RGRAQG
Trigger: CCCTTGGGCACGCCCACGCCAGGACGCAAGCGGAGA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAATTAACAGCTGGTCATTaGGGAGAGGACTGTAGAACT +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKLTAGH*GEDCRT
Trigger: AGTTCTACAGTCCTCTCCCCAATGACCAGCTGTTAA...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTCCAAATCAGCCAGCCTaGTTACAGCTATATCTAGGG +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILPNQPA*LQLYLG
Trigger: CCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGG...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR CAA 72 bp GAAAGGAGAACCGTTCCCCACGTTAGAGCTCTGGTGTaGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGC +
Preference number: 4 (lower is better)
Translates to: ERRTVPHVRALV*AIQCGLIEFRC
Trigger: GCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAGAGCTCTAACGTGGGGAACGGTTCTCCTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGGCCTCGAGAATCTGCTaGGCTCTCAGTTCTTTCTCC +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWASRIC*ALSSFS
Trigger: GGAGAAAGAACTGAGAGCTCAGCAGATTCTCGAGGC...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGGGGGGTCATAACATCTaGCTCAGGAGGCATTTTAGC +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVGGHNI*LRRHFS
Trigger: GCTAAAATGCCTCCTGAGTCAGATGTTATGACCCCC...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTGGCCACCCACAGAACTaGAGTCCCATCATAGACACA +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVGHPQN*SPIIDT
Trigger: TGTGTCTATGATGGGACTTCAGTTCTGTGGGTGGCC...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGGGAGGTGCAGCACTTTaGGCAATGTCTTCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITGGAAL*AMSSGP
Trigger: AGGACCTGAAGACATTGCTCAAAGTGCTGCACCTCC...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTTGTCAAAAACAAGCCTaGCGTCTAGAGCAAAGGTCT +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILCQKQA*RLEQRS
Trigger: AGACCTTTGCTCTAGACGTCAGGCTTGTTTTTGACA...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTCAGGACCATTTCGACTaGTCTTCCCAGAAGTCCTCG +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVQDHFD*SSQKSS
Trigger: CGAGGACTTCTGGGAAGAGCAGTCGAAATGGTCCTG...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGCAGGACCATTTCGACTaGTCTTCCCAGAAGTCCTCG +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITQDHFD*SSQKSS
Trigger: CGAGGACTTCTGGGAAGAGCAGTCGAAATGGTCCTG...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTCTTCGGCCGTCCATTaGCCTGATACGAGGAATGAC +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWSSAVH*PDTRND
Trigger: GTCATTCCTCGTATCAGGGCAATGGACGGCCGAAGA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTTCATAAGCATCACATaGTGCCGCCTTCGCTCCCGT +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWFISIT*CRLRSR
Trigger: ACGGGAGCGAAGGCGGCAGCATGTGATGCTTATGAA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTCCAGCTCCATTGCTTaGTCTTCGACCGACCAGTTC +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALSSSIA*SSTDQF
Trigger: GAACTGGTCGGTCGAAGAGCAAGCAATGGAGCTGGA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATCACTGCTGTGCAGGATaGGCGAGGCAGAGGGCAGCG +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHHCCAG*ARQRAA
Trigger: CGCTGCCCTCTGCCTCGCCCATCCTGCACAGCAGTG...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTCTATCTGGATTGGGTaGTCTTCCTCTTCGGCCGTC +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALSIWIG*SSSSAV
Trigger: GACGGCCGAAGAGGAAGACCACCCAATCCAGATAGA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTGGGTCTATCTGGATTaGGTGGTCTTCCTCTTCGGC +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWWVYLD*VVFLFG
Trigger: GCCGAAGAGGAAGACCACCCAATCCAGATAGACCCA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTCCGGCGTTTCATCCTaGATTCCTCTCTTGCTCTGG +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALSGVSS*IPLLLW
Trigger: CCAGAGCAAGAGAGGAATCCAGGATGAAACGCCGGA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGCTAGCTCCTCAACGCTaGCTGTTTGGTCACCTTCAT +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVLAPQR*LFGHLH
Trigger: ATGAAGGTGACCAAACAGCCAGCGTTGAGGAGCTAG...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTTCCGATGCAGGCTCTaGACACATCCAACCCTTCAC +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVFRCRL*THPTLH
Trigger: GTGAAGGGTTGGATGTGTCCAGAGCCTGCATCGGAA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGGGAAGGAGCAGAAGATaGTGTTGGTGTAGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITGRSRR*CWCSGG
Trigger: TCCTCCACTACACCAACATCATCTTCTGCTCCTTCC...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTGGCTGTAGAACTAAGTaGAGCAGCTCCTGTGGAAAG +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALGCRTK*SSSCGK
Trigger: CTTTCCACAGGAGCTGCTTCACTTAGTTCTACAGCC...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGCTCTTCCAGATCGTCTaGGTCACTGCTGCTAATGCC +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMLFQIV*VTAANA
Trigger: GGCATTAGCAGCAGTGACTCAGACGATCTGGAAGAG...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAGTGGAGGTGAGGTGCTaGGTGCGCTGTGAGACTGGA +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQVEVRC*VRCETG
Trigger: TCCAGTCTCACAGCGCACTCAGCACCTCACCTCCAC...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGCACCATGAGACAGTCTaGAAATGTGGTTCCAGAGAG +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVHHETV*KCGSRE
Trigger: CTCTCTGGAACCACATTTTCAGACTGTCTCATGGTG...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGTTCTGTGCTGGAGTGTaGGCCTGGAAAGCTTTAGTC +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITFCAGV*AWKALV
Trigger: GACTAAAGCTTTCCAGGCTCACACTCCAGCACAGAA...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTTCTGTGCTGGAGTGTaGGCCTGGAAAGCTTTAGTC +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVFCAGV*AWKALV
Trigger: GACTAAAGCTTTCCAGGCTCACACTCCAGCACAGAA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTCCTGTTTTCTTAGCATaGATTATCCTAAGCTTGCGG +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILPVFLA*IILSLR
Trigger: CCGCAAGCTTAGGATAATTCATGCTAAGAAAACAGG...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTTCTTTCTGCTCGCAGTaGTCTCTAATGGAACAGTTT +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILSFCSQ*SLMEQF
Trigger: AAACTGTTCCATTAGAGATCACTGCGAGCAGAAAGA...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTGGGGGTCATAACATCTaGCTCAGGAGGCATTTTAGC +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVGGHNI*LRRHFS
Trigger: GCTAAAATGCCTCCTGAGTCAGATGTTATGACCCCC...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAATGGGGCCGGCGAAGGTaGCTTAGATGGTGGCTGAGA +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQWGRRR*LRWWLR
Trigger: TCTCAGCCACCATCTAAGTCACCTTCGCCGGCCCCA...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGGGAGGTGCAGCACTTTaGGCAATGTCTTCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMGGAAL*AMSSGP
Trigger: AGGACCTGAAGACATTGCTCAAAGTGCTGCACCTCC...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGCTTTGCTTCCTCTCTTaGGGGAGCTGCTTGTGGAAG +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMLCFLS*GSCLWK
Trigger: CTTCCACAAGCAGCTCCCTCAAGAGAGGAAGCAAAG...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGAGGTGTCTGACGATGTaGCTGAGTCACTATCACTGT +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVRCLTM*LSHYHC
Trigger: ACAGTGATAGTGACTCAGGCACATCGTCAGACACCT...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAACTGGGCTTTTTCAGTTaGTTTCTGTCCATCTGTTTT +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKLGFFS*FLSICF
Trigger: AAAACAGATGGACAGAAAGCAACTGAAAAAGCCCAG...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCAGCTCCTGATCGTCTaGCACTCTTCTTCGTTTGGA +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALQLLIV*HSSSFG
Trigger: TCCAAACGAAGAAGAGTGGCAGACGATCAGGAGCTG...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTTCTTTGGCAACCCGTaGCTGTTCCTGCTTCTGAAG +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVFFGNP*LFLLLK
Trigger: CTTCAGAAGCAGGAACAGGCACGGGTTGCCAAAGAA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGTTCTTTGGCAACCCGTaGCTGTTCCTGCTTCTGAAG +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITFFGNP*LFLLLK
Trigger: CTTCAGAAGCAGGAACAGGCACGGGTTGCCAAAGAA...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGTTCATAAGCATCACATaGTGCCGCCTTCGCTCCCGT +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMFISIT*CRLRSR
Trigger: ACGGGAGCGAAGGCGGCAGCATGTGATGCTTATGAA...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGGATGGACGCTTTCTGTaGTGGAGTGTGAGCCTGGAA +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMDGRFL*WSVSLE
Trigger: TTCCAGGCTCACACTCCAGCACAGAAAGCGTCCATC...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGAATTTGCTTTTGCAATaGCTTTTCCCGGATCCCGCG +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVNLLLQ*LFPDPA
Trigger: CGCGGGATCCGGGAAAAGGCATTGCAAAAGCAAATT...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTTCCGAGCCAGTGCATaGGCACTGTTTTCTTCGTCA +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWFRASA*ALFSSS
Trigger: TGACGAAGAAAACAGTGCGCATGCACTGGCTCGGAA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGACCACTAATGGATGGTaGAGGAGCAGGGACAGTAAC +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITTTNGW*RSRDSN
Trigger: GTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGACCACTAATGGATGGTaGAGGAGCAGGGACAGTAAC +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWTTNGW*RSRDSN
Trigger: GTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGT...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTACTGTGGCCAGCTCTaGCTATGTCCGAGTCATCTT +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALYCGQL*LCPSHL
Trigger: AAGATGACTCGGACATAGGCAGAGCTGGCCACAGTA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTACTGTGGCCAGCTCTaGCTATGTCCGAGTCATCTT +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWYCGQL*LCPSHL
Trigger: AAGATGACTCGGACATAGGCAGAGCTGGCCACAGTA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGATATGCAACTTCTCCTaGAAGGCGCCCACCAAAGTT +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVICNFS*KAPTKV
Trigger: AACTTTGGTGGGCGCCTTCCAGGAGAAGTTGCATAT...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGTGGGTCTATCTGGATTaGGTGGTCTTCCTCTTCGGC +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMWVYLD*VVFLFG
Trigger: GCCGAAGAGGAAGACCACCCAATCCAGATAGACCCA...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTGCTCTGGGTCTATCTaGATTGGGTGGTCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWCSGSI*IGWSSS
Trigger: AGAGGAAGACCACCCAATCCAGATAGACCCAGAGCA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTCTAGCTCCTCAACGCTaGCTGTTTGGTCACCTTCAT +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVLAPQR*LFGHLH
Trigger: ATGAAGGTGACCAAACAGCCAGCGTTGAGGAGCTAG...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGGACTCCTCCTTTGCCTaGGAGCTTTGGAAAATAAAC +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVDSSFA*ELWKIN
Trigger: GTTTATTTTCCAAAGCTCTCAGGCAAAGGAGGAGTC...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAGTTTCCTTTTTGGCTTaGTTTACCAAAGACAAAGGT +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKVSFLA*FTKDKG
Trigger: ACCTTTGTCTTTGGTAAATCAAGCCAAAAAGGAAAC...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTACTCCATTTGGTTGGTaGTTCCCTAAAAGTGCATTT +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILTPFGW*FPKSAF
Trigger: AAATGCACTTTTAGGGAATCACCAACCAAATGGAGT...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGACTACTGGGAACGTCTaGATCTGTCCCTCTAAACTG +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITTTGNV*ICPSKL
Trigger: CAGTTTAGAGGGACAGATTCAGACGTTCCCAGTAGT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTAGTGTGGAGTTGAAGTaGGTGTGGAAGAAGAAGTGC +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALSVELK*VWKKKC
Trigger: GCACTTCTTCTTCCACACTCACTTCAACTCCACACT...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTAGTGTGGAGTTGAAGTaGGTGTGGAAGAAGAAGTGC +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVSVELK*VWKKKC
Trigger: GCACTTCTTCTTCCACACTCACTTCAACTCCACACT...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGCACCATGAGACAGTCTaGAAATGTGGTTCCAGAGAG +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWHHETV*KCGSRE
Trigger: CTCTCTGGAACCACATTTTCAGACTGTCTCATGGTG...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGATCACATACAGCAGCTaGGAGGAGCCTCACAAGCAA +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMITYSS*EEPHKQ
Trigger: TTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGAT...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGATCGAGCGTAGTGAGTaGGAAGCATCAAAGAGCTTT +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVIERSE*EASKSF
Trigger: AAAGCTCTTTGATGCTTCTCACTCACTACGCTCGAT...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTCTCCTGTGGAAAGGCTaGTCTTTGAAACTGCTGAAG +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVLLWKG*SLKLLK
Trigger: CTTCAGCAGTTTCAAAGAGCAGCCTTTCCACAGGAG...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGCAGCTCCTGATCGTCTaGCACTCTTCTTCGTTTGGA +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMQLLIV*HSSSFG
Trigger: TCCAAACGAAGAAGAGTGGCAGACGATCAGGAGCTG...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTTCCGCTGCTCTAGTTTaGGTTCCTTATTCAATCTTT +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILSAALV*VPYSIF
Trigger: AAAGATTGAATAAGGAACGCAAACTAGAGCAGCGGA...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTAATTTGCTTTTGCAATaGCTTTTCCCGGATCCCGCG +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALNLLLQ*LFPDPA
Trigger: CGCGGGATCCGGGAAAAGGCATTGCAAAAGCAAATT...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTGTGAAGCAGCTCCTGTaGAAAGGCTGCTCTTTGAAA +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALVKQLL*KGCSLK
Trigger: TTTCAAAGAGCAGCCTTTCCACAGGAGCTGCTTCAC...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTGTGAAGCAGCTCCTGTaGAAAGGCTGCTCTTTGAAA +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVVKQLL*KGCSLK
Trigger: TTTCAAAGAGCAGCCTTTCCACAGGAGCTGCTTCAC...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCTGAGCTTGTGCTTTaGTTCTGTCCCATGGAACTT +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALPELVL*FCPMEL
Trigger: AAGTTCCATGGGACAGAACCAAAGCACAAGCTCAGG...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGCCTGAGCTTGTGCTTTaGTTCTGTCCCATGGAACTT +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITPELVL*FCPMEL
Trigger: AAGTTCCATGGGACAGAACCAAAGCACAAGCTCAGG...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACTGGGACTGGAATGGTaGGTGCGTCTGGGACTCAGA +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQLGLEW*VRLGLR
Trigger: TCTGAGTCCCAGACGCACCCACCATTCCAGTCCCAG...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTACAAAGGTTTCACATTaGACACCAGTCCCGTCGACT +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALTKVSH*TPVPST
Trigger: AGTCGACGGGACTGGTGTCCAATGTGAAACCTTTGT...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTTATATTGTTCCCGTTTaGATCGCAATTCACTGGTCA +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILYIVPV*IAIHWS
Trigger: TGACCAGTGAATTGCGATCCAAACGGGAACAATATA...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCTATCTGATTCCTCCTaGTCTTTCTCCTCGTCGTCT +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALLSDSS*SFSSSS
Trigger: AGACGACGAGGAGAAAGACCAGGAGGAATCAGATAG...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGCTATCTGATTCCTCCTaGTCTTTCTCCTCGTCGTCT +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWLSDSS*SFSSSS
Trigger: AGACGACGAGGAGAAAGACCAGGAGGAATCAGATAG...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAATGGAGGGAGGGCTTTTaGCAGAGGAGCTTGTCTGGG +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQWREGF*QRSLSG
Trigger: CCCAGACAAGCTCCTCTGCCAAAAGCCCTCCCTCCA...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGATATGCAACTTCTCCTaGAAGGCGCCCACCAAAGTT +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITICNFS*KAPTKV
Trigger: AACTTTGGTGGGCGCCTTCCAGGAGAAGTTGCATAT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTATTCCTCTCTTGCTCTaGGTCTATCTGGATTGGGTG +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALIPLLL*VYLDWV
Trigger: CACCCAATCCAGATAGACCCAGAGCAAGAGAGGAAT...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTCAGTTCTTTCTCCTTaGTTCGTTTCTCGGCCTCCA +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALSVLSP*FVSRPP
Trigger: TGGAGGCCGAGAAACGAACCAAGGAGAAAGAACTGA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTCTGGCAAGGGCTTTTaGTCTGCTAAGCACATGTCT +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVSGKGF*SAKHMS
Trigger: AGACATGTGCTTAGCAGACCAAAAGCCCTTGCCAGA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTCAACGCTGGCTGTTTaGTCACCTTCATCCTCATCT +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWSTLAV*SPSSSS
Trigger: AGATGAGGATGAAGGTGACCAAACAGCCAGCGTTGA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTCAACGCTGGCTGTTTaGTCACCTTCATCCTCATCT +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVSTLAV*SPSSSS
Trigger: AGATGAGGATGAAGGTGACCAAACAGCCAGCGTTGA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTAAAGCTTGCTTAACTTaGAGAAAGAGCCTGGTTTCT +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILKACLT*RKSLVS
Trigger: AGAAACCAGGCTCTTTCTCCAAGTTAAGCAAGCTTT...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTCCAAATCAGCCAGCCTaGTTACAGCTATATCTAGGG +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVPNQPA*LQLYLG
Trigger: CCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGG...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTATTTTCGCATACTGTaGCCAGCTCTGCCTATGTCC +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVYFRIL*PALPMS
Trigger: GGACATAGGCAGAGCTGGCCACAGTATGCGAAAATA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTATTTTCGCATACTGTaGCCAGCTCTGCCTATGTCC +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALYFRIL*PALPMS
Trigger: GGACATAGGCAGAGCTGGCCACAGTATGCGAAAATA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR CAA 72 bp AGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTaGGAAAACTCTTTGGGTGCGCTTCCCTGTTCTACC +
Preference number: 4 (lower is better)
Translates to: RVSLLLHYDTLS*ENSLGALPCST
Trigger: GGTAGAACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGTTGGTTTCTTATCTTTaGTTCTGTCGGCTCTGGCGT +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITLVSYL*FCRLWR
Trigger: ACGCCAGAGCCGACAGAATCAAAGATAAGAAACCAA...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTTGTGCTTCAGTCTCTaGGTCAGAATCGTCATCTTC +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALLCFSL*VRIVIF
Trigger: GAAGATGACGATTCTGACTCAGAGACTGAAGCACAA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTGACTCCTCCTTTGCCTaGGAGCTTTGGAAAATAAAC +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALDSSFA*ELWKIN
Trigger: GTTTATTTTCCAAAGCTCTCAGGCAAAGGAGGAGTC...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTGGTTGCTTTAGTATTTaGCAAAGCTGCAATAACCTT +
Preference number: 4 (lower is better)
Translates to: VTNGLGWRSEASKTGVILGCFSI*QSCNNL
Trigger: AAGGTTATTGCAGCTTTGTCAAATACTAAAGCAACC...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTTTTGGATGTGCTGGTaGGCTAGAGGTTGCTTTAGT +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVFWMCW*ARGCFS
Trigger: ACTAAAGCAACCTCTAGCTCACCAGCACATCCAAAA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTTTTGGATGTGCTGGTaGGCTAGAGGTTGCTTTAGT +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWFWMCW*ARGCFS
Trigger: ACTAAAGCAACCTCTAGCTCACCAGCACATCCAAAA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTTCAGTGTCACTATCTaGTTCCTCCTGGTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALFSVTI*FLLVFL
Trigger: GAGAAAGACCAGGAGGAATCAGATAGTGACACTGAA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTAAAATCCCTCCACATTaGGGGAGAATCCAGTATCTG +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVKIPPH*GRIQYL
Trigger: CAGATACTGGATTCTCCCTCAATGTGGAGGGATTTT...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGAAAATCCCTCCACATTaGGGGAGAATCCAGTATCTG +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITKIPPH*GRIQYL
Trigger: CAGATACTGGATTCTCCCTCAATGTGGAGGGATTTT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAGGTATTTTTATTCCCTaGTTTAAGTACATCAGGAGA +
Preference number: 4 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKGIFIP*FKYIRR
Trigger: TCTCCTGATGTACTTAAAGCAGGGAATAAAAATACC...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGAAAATCTACTGGCTTTaGTACTTCAACAGCCACTGG +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVKIYWL*YFNSHW
Trigger: CCAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTTT...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACAGGAGGTAATGGCTaGTGTGTTCTTCTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMTGGNG*CVLLSW
Trigger: CCAGGAAAGAAGAACACACCAGCCATTACCTCCTGT...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTTTGTGCTGCTTGTCTaGCTATTTCTTGAGCCTGCA +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVFVLLV*LFLEPA
Trigger: TGCAGGCTCAAGAAATAGCCAGACAAGCAGCACAAA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTTTGTGCTGCTTGTCTaGCTATTTCTTGAGCCTGCA +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWFVLLV*LFLEPA
Trigger: TGCAGGCTCAAGAAATAGCCAGACAAGCAGCACAAA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGAGCTTTCGTCTGTACTaGCTCTGTTGTTTGCTCAGT +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWSFRLY*LCCLLS
Trigger: ACTGAGCAAACAACAGAGCCAGTACAGACGAAAGCT...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTGAACTGCATTTCTTCTaGGATAGGTTTGGGACTAGG +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVELHFF*DRFGTR
Trigger: CCTAGTCCCAAACCTATCCCAGAAGAAATGCAGTTC...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGCTATCTGATTCTGATTaGCTGTCATCAGACTCATCA +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVLSDSD*LSSDSS
Trigger: TGATGAGTCTGATGACAGTCAATCAGAATCAGATAG...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGTGTCTGGCTATTTCTTaGGCCTGCAGTTTCCTTAGT +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMCLAIS*ACSFLS
Trigger: ACTAAGGAAACTGCAGGCTCAAGAAATAGCCAGACA...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCTGTTTTCTTAGCATaGATTATCCTAAGCTTGCGG +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALPVFLA*IILSLR
Trigger: CCGCAAGCTTAGGATAATTCATGCTAAGAAAACAGG...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTCTTTCTGCTCGCAGTaGTCTCTAATGGAACAGTTT +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALSFCSQ*SLMEQF
Trigger: AAACTGTTCCATTAGAGATCACTGCGAGCAGAAAGA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGACTGGAAGTCAAGAATaGACTACTGCCATTTCCTTC +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWTGSQE*TTAISF
Trigger: GAAGGAAATGGCAGTAGTTCATTCTTGACTTCCAGT...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGACTGGAAGTCAAGAATaGACTACTGCCATTTCCTTC +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITTGSQE*TTAISF
Trigger: GAAGGAAATGGCAGTAGTTCATTCTTGACTTCCAGT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACACTTGCAAACTCGCTaGTGCAACCCTCCGTTCCAA +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQHLQTR*CNPPFQ
Trigger: TTGGAACGGAGGGTTGCATCAGCGAGTTTGCAAGTG...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGTTATCCAGTTTGATCTaGATGGTGGTACTTAAGGGG +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITLSSLI*MVVLKG
Trigger: CCCCTTAAGTACCACCATTCAGATCAAACTGGATAA...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGAAGTTTCGTAAGAACTaGACCACCATGAGACAGTCT +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITKFRKN*TTMRQS
Trigger: AGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTCTTGTACTTCACCCATaGTGTCCCCTATATTTAGCA +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVLVLHP*CPLYLA
Trigger: TGCTAAATATAGGGGACAGCATGGGTGAAGTACAAG...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTCAAGAATGAACTACTaGCATTTCCTTCTGGCAGTC +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVSRMNY*HFLLAV
Trigger: GACTGCCAGAAGGAAATGGCAGTAGTTCATTCTTGA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGTCAAGAATGAACTACTaGCATTTCCTTCTGGCAGTC +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITSRMNY*HFLLAV
Trigger: GACTGCCAGAAGGAAATGGCAGTAGTTCATTCTTGA...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTAAAATCTACTGGCTTTaGTACTTCAACAGCCACTGG +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALKIYWL*YFNSHW
Trigger: CCAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTTT...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATGTCCTCCCTTTCCGATaGAGGCTCTGGACACATCCA +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHVLPFR*RLWTHP
Trigger: TGGATGTGTCCAGAGCCTGCATCGGAAAGGGAGGAC...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGTCGACTGTATTACACTaGTGTGTTTGGTCACAGACT +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITSTVLH*CVWSQT
Trigger: AGTCTGTGACCAAACACACCAGTGTAATACAGTCGA...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTCGACTGTATTACACTaGTGTGTTTGGTCACAGACT +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWSTVLH*CVWSQT
Trigger: AGTCTGTGACCAAACACACCAGTGTAATACAGTCGA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGCAGAGTCTTTACTACTaGGAACGTCTGAATCTGTCC +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMQSLYY*ERLNLS
Trigger: GGACAGATTCAGACGTTCCCAGTAGTAAAGACTCTG...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTATCGCAAGGTGTTTTTaGCAAAAGGCTAAACCACTG +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALIARCF*QKAKPL
Trigger: CAGTGGTTTAGCCTTTTGCCAAAAACACCTTGCGAT...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGATCGCAAGGTGTTTTTaGCAAAAGGCTAAACCACTG +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITIARCF*QKAKPL
Trigger: CAGTGGTTTAGCCTTTTGCCAAAAACACCTTGCGAT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR CAA 72 bp GGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTaGCTATTGCACTATGACACCCTTTCCTTGGAAAAC +
Preference number: 4 (lower is better)
Translates to: GVGYSVRFDRVS*LLHYDTLSLEN
Trigger: GTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAGGCTGTAGAACTAAGTaGAGCAGCTCCTGTGGAAAG +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQGCRTK*SSSCGK
Trigger: CTTTCCACAGGAGCTGCTTCACTTAGTTCTACAGCC...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAAGTCCTCGAATGGAATaGCGAATCGTGATTCTGGGC +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQSPRME*RIVILG
Trigger: GCCCAGAATCACGATTCGTCATTCCATTCGAGGACT...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGACTCCATTTGGTTGGTaGTTCCCTAAAAGTGCATTT +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWTPFGW*FPKSAF
Trigger: AAATGCACTTTTAGGGAATCACCAACCAAATGGAGT...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGCTATCTGATTCTGATTaGCTGTCATCAGACTCATCA +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITLSDSD*LSSDSS
Trigger: TGATGAGTCTGATGACAGTCAATCAGAATCAGATAG...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCTCTTGAAGAACACTaGGGTTTGGAACATCAATAT +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALPLEEH*GLEHQY
Trigger: ATATTGATGTTCCAAACCTCAGTGTTCTTCAAGAGG...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTAGAGTCACTTTTACTTaGAGCAACACTGGAAGTCAA +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVRVTFT*SNTGSQ
Trigger: TTGACTTCCAGTGTTGCTTCAAGTAAAAGTGACTCT...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGAGAGTCACTTTTACTTaGAGCAACACTGGAAGTCAA +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITRVTFT*SNTGSQ
Trigger: TTGACTTCCAGTGTTGCTTCAAGTAAAAGTGACTCT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGTTATCCAGTTTGATCTaGATGGTGGTACTTAAGGGG +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMLSSLI*MVVLKG
Trigger: CCCCTTAAGTACCACCATTCAGATCAAACTGGATAA...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGCCACATTATCCAGTTTaGTCTGAATGGTGGTACTTA +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITPHYPV*SEWWYL
Trigger: TAAGTACCACCATTCAGATCAAACTGGATAATGTGG...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTCCACATTATCCAGTTTaGTCTGAATGGTGGTACTTA +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVPHYPV*SEWWYL
Trigger: TAAGTACCACCATTCAGATCAAACTGGATAATGTGG...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAGGTGCTTTCTGCTTTTaGCAGGTTGAGGGAAGTGGT +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQGAFCF*QVEGSG
Trigger: ACCACTTCCCTCAACCTGTCAAAAGCAGAAAGCACC...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTCTTCGGCCGTCCATTaGCCTGATACGAGGAATGAC +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHSSAVH*PDTRND
Trigger: GTCATTCCTCGTATCAGGGCAATGGACGGCCGAAGA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCTACCTCTAAAAGCTTaGTTAACTTGGAGAAAGAGC +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALLPLKA*LTWRKS
Trigger: GCTCTTTCTCCAAGTTAAGCAAGCTTTTAGAGGTAG...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGCTACCTCTAAAAGCTTaGTTAACTTGGAGAAAGAGC +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITLPLKA*LTWRKS
Trigger: GCTCTTTCTCCAAGTTAAGCAAGCTTTTAGAGGTAG...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGGTAAGTTCTCCATCATaGTCCTTGAACAACTTAGTA +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVVSSPS*SLNNLV
Trigger: TACTAAGTTGTTCAAGGAGCATGATGGAGAACTTAC...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGCCATGTAATAGCACCTaGTTGTTACTTTTGTGTTGT +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVPCNST*LLLLCC
Trigger: ACAACACAAAAGTAACAACCAGGTGCTATTACATGG...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTATATTGTTCCCGTTTaGATCGCAATTCACTGGTCA +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALYIVPV*IAIHWS
Trigger: TGACCAGTGAATTGCGATCCAAACGGGAACAATATA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGTACTTGAAGCAACACTaGAAGTCAAGAATGAACTAC +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVYLKQH*KSRMNY
Trigger: GTAGTTCATTCTTGACTTCCAGTGTTGCTTCAAGTA...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGACTAGGAAAATCTACTaGCTTTGCTACTTCAACAGC +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWTRKIY*LCYFNS
Trigger: GCTGTTGAAGTAGCAAAGCCAGTAGATTTTCCTAGT...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGACTAGGAAAATCTACTaGCTTTGCTACTTCAACAGC +
Preference number: 4 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITTRKIY*LCYFNS
Trigger: GCTGTTGAAGTAGCAAAGCCAGTAGATTTTCCTAGT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
3UTR CAA 72 bp GGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATaGCACTATGACACCCTTTCCTTGGAAAACTCTTTG +
Preference number: 4 (lower is better)
Translates to: GYSVRFDRVSLL*HYDTLSLENSL
Trigger: CAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTGGTTGCTTTAGTATTTaGCAAAGCTGCAATAACCTT +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVGCFSI*QSCNNL
Trigger: AAGGTTATTGCAGCTTTGTCAAATACTAAAGCAACC...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGGCCTGTTCCTGCTTCTaGAGTTTTCTCAAAAGTTTT +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMACSCF*SFLKSF
Trigger: AAAACTTTTGAGAAAACTTCAGAAGCAGGAACAGGC...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATGGTGCTTTCTGCTTTTaGCAGGTTGAGGGAAGTGGT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHGAFCF*QVEGSG
Trigger: ACCACTTCCCTCAACCTGTCAAAAGCAGAAAGCACC...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACTCCTGTGGAAAGGCTaGTCTTTGAAACTGCTGAAG +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQLLWKG*SLKLLK
Trigger: CTTCAGCAGTTTCAAAGAGCAGCCTTTCCACAGGAG...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGCTGGGCTTTTTCAGTTaGTTTCTGTCCATCTGTTTT +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMLGFFS*FLSICF
Trigger: AAAACAGATGGACAGAAAGCAACTGAAAAAGCCCAG...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGGATCTGGAGACTCTCTaGCTTTTTAAGCTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWDLETL*LFKLFF
Trigger: AAAGAAAAGCTTAAAAAGGCAGAGAGTCTCCAGATC...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGCCATGTAATAGCACCTaGTTGTTACTTTTGTGTTGT +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWPCNST*LLLLCC
Trigger: ACAACACAAAAGTAACAACCAGGTGCTATTACATGG...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAACAGGAGGTAATGGCTaGTGTGTTCTTCTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQTGGNG*CVLLSW
Trigger: CCAGGAAAGAAGAACACACCAGCCATTACCTCCTGT...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGAAAAATGGATTAGGGTaGTTGTTATCTAGTGGTAGT +
Preference number: 4 (lower is better)
Translates to: WVRFPVLPKLADESHKPVKNGLG*LLSSGS
Trigger: ACTACCACTAGATAACAACCACCCTAATCCATTTTT...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTGCTCTGGGTCTATCTaGATTGGGTGGTCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHCSGSI*IGWSSS
Trigger: AGAGGAAGACCACCCAATCCAGATAGACCCAGAGCA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAATTCCTCTCTTGCTCTaGGTCTATCTGGATTGGGTG +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQIPLLL*VYLDWV
Trigger: CACCCAATCCAGATAGACCCAGAGCAAGAGAGGAAT...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATATCACCACTAATGGATaGTGCAGGAGCAGGGACAGT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHITTNG*CRSRDS
Trigger: ACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGAT...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATCCAGACCCTGAGCCCTaGAGCAATATCCTCTTCAAT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHPDPEP*SNILFN
Trigger: ATTGAAGAGGATATTGCTCCAGGGCTCAGGGTCTGG...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAATTGGTTTCTTATCTTTaGTTCTGTCGGCTCTGGCGT +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQLVSYL*FCRLWR
Trigger: ACGCCAGAGCCGACAGAATCAAAGATAAGAAACCAA...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACTCCTCATCCTCATTTaGGTCCTCAGAGTCTTTACT +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQLLILI*VLRVFT
Trigger: AGTAAAGACTCTGAGGACTCAAATGAGGATGAGGAG...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAATTCAGTGTCACTATCTaGTTCCTCCTGGTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQFSVTI*FLLVFL
Trigger: GAGAAAGACCAGGAGGAATCAGATAGTGACACTGAA...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAATCGAGCGTAGTGAGTaGGAAGCATCAAAGAGCTTT +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQIERSE*EASKSF
Trigger: AAAGCTCTTTGATGCTTCTCACTCACTACGCTCGAT...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATGTGAGGAGAACGGGGTaGTACTTGAGACATTTTCGT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHVRRTG*YLRHFR
Trigger: ACGAAAATGTCTCAAGTAGCACCCCGTTCTCCTCAC...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATCCTGGATTCCTCTCTTaGTCTGGGTCTATCTGGATT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHPGFLS*SGSIWI
Trigger: AATCCAGATAGACCCAGAGCAAGAGAGGAATCCAGG...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCAAAAGTTTTATTTGTaGTGCTTGTCTGGCTATTTC +
Preference number: 4 (lower is better)
Translates to: SLLLHYDTLSLENSLGALQKFYL*CLSGYF
Trigger: GAAATAGCCAGACAAGCAGCACAAATAAAACTTTTG...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAATTCAGAAGGACAGCCTaGTGTCTTCTCAGTTCTTTC +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQFRRTA*CLLSSF
Trigger: GAAAGAACTGAGAAGACAGCAGGCTGTCCTTCTGAA...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGGATCTGGAGACTCTCTaGCTTTTTAAGCTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMDLETL*LFKLFF
Trigger: AAAGAAAAGCTTAAAAAGGCAGAGAGTCTCCAGATC...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGCATAGCCTTCTTCCTTaGTTTCTTATCTTTGATTCT +
Preference number: 4 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWHSLLP*FLIFDS
Trigger: AGAATCAAAGATAAGAAACCAAGGAAGAAGGCTATG...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTAAAAATGGATTAGGGTaGTTGTTATCTAGTGGTAGT +
Preference number: 4 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVKNGLG*LLSSGS
Trigger: ACTACCACTAGATAACAACCACCCTAATCCATTTTT...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAGAACTGCATTTCTTCTaGGATAGGTTTGGGACTAGG +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQELHFF*DRFGTR
Trigger: CCTAGTCCCAAACCTATCCCAGAAGAAATGCAGTTC...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTGTCTGGCTATTTCTTaGGCCTGCAGTTTCCTTAGT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHCLAIS*ACSFLS
Trigger: ACTAAGGAAACTGCAGGCTCAAGAAATAGCCAGACA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTGTCAAAAACAAGCCTaGCGTCTAGAGCAAAGGTCT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHCQKQA*RLEQRS
Trigger: AGACCTTTGCTCTAGACGTCAGGCTTGTTTTTGACA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTTCAGAAGGACAGCCTaGTGTCTTCTCAGTTCTTTC +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHFRRTA*CLLSSF
Trigger: GAAAGAACTGAGAAGACAGCAGGCTGTCCTTCTGAA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGTCATCACGTTTCTCTTaGTTCAATCGTTCTTTTTCT +
Preference number: 4 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMSSRFS*FNRSFS
Trigger: AGAAAAAGAACGATTGAAGCAAGAGAAACGTGATGA...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACTTGTACTTCACCCATaGTGTCCCCTATATTTAGCA +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQLVLHP*CPLYLA
Trigger: TGCTAAATATAGGGGACAGCATGGGTGAAGTACAAG...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATCAGAGTCTTTACTACTaGGAACGTCTGAATCTGTCC +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHQSLYY*ERLNLS
Trigger: GGACAGATTCAGACGTTCCCAGTAGTAAAGACTCTG...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATAGCTTTCGTCTGTACTaGCTCTGTTGTTTGCTCAGT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHSFRLY*LCCLLS
Trigger: ACTGAGCAAACAACAGAGCCAGTACAGACGAAAGCT...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTTAACAGCTGGTCATTaGGGAGAGGACTGTAGAACT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHLTAGH*GEDCRT
Trigger: AGTTCTACAGTCCTCTCCCCAATGACCAGCTGTTAA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACCTCTTGAAGAACACTaGGGTTTGGAACATCAATAT +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQPLEEH*GLEHQY
Trigger: ATATTGATGTTCCAAACCTCAGTGTTCTTCAAGAGG...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATAAGTTTCGTAAGAACTaGACCACCATGAGACAGTCT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHKFRKN*TTMRQS
Trigger: AGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTT...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR TCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAGTTTCCTTTTTGGCTTaGTTTACCAAAGACAAAGGT +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQVSFLA*FTKDKG
Trigger: ACCTTTGTCTTTGGTAAATCAAGCCAAAAAGGAAAC...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTCCGCTGCTCTAGTTTaGGTTCCTTATTCAATCTTT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHSAALV*VPYSIF
Trigger: AAAGATTGAATAAGGAACGCAAACTAGAGCAGCGGA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAACTGGCTCTGTTGTTTaGTCAGTTTTTCAATCTGTT +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQTGSVV*SVFQSV
Trigger: AACAGATTGAAAAACTGAGCAAACAACAGAGCCAGT...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAGTAAGTTCTCCATCATaGTCCTTGAACAACTTAGTA +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQVSSPS*SLNNLV
Trigger: TACTAAGTTGTTCAAGGAGCATGATGGAGAACTTAC...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATAAAGCTTGCTTAACTTaGAGAAAGAGCCTGGTTTCT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHKACLT*RKSLVS
Trigger: AGAAACCAGGCTCTTTCTCCAAGTTAAGCAAGCTTT...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAAAGTTTTATTTGTGCTaGTTGTCTGGCTATTTCTTG +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQKFYLC*LSGYFL
Trigger: CAAGAAATAGCCAGACAAGCAGCACAAATAAAACTT...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACAAAAGTTTTATTTGTaGTGCTTGTCTGGCTATTTC +
Preference number: 4 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQQKFYL*CLSGYF
Trigger: GAAATAGCCAGACAAGCAGCACAAATAAAACTTTTG...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATACTGGCTCTGTTGTTTaGTCAGTTTTTCAATCTGTT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHTGSVV*SVFQSV
Trigger: AACAGATTGAAAAACTGAGCAAACAACAGAGCCAGT...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTACTTGAAGCAACACTaGAAGTCAAGAATGAACTAC +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHYLKQH*KSRMNY
Trigger: GTAGTTCATTCTTGACTTCCAGTGTTGCTTCAAGTA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR GCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATGGTATTTTTATTCCCTaGTTTAAGTACATCAGGAGA +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHGIFIP*FKYIRR
Trigger: TCTCCTGATGTACTTAAAGCAGGGAATAAAAATACC...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATCATAGCCTTCTTCCTTaGTTTCTTATCTTTGATTCT +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHHSLLP*FLIFDS
Trigger: AGAATCAAAGATAAGAAACCAAGGAAGAAGGCTATG...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CCA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTGCATTTGTCAAAAATaGATTAGGGTGGTTGTTATC +
Preference number: 4 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHCICQK*IRVVVI
Trigger: GATAACAACCACCCTAATCCATTTTTGACAAATGCA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAACCCTTCCTTCTCCGCTaGCGTCCTGGCGTGGGCGTG +
Preference number: 5 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKPFLLR*RPGVGV
Trigger: CACGCCCACGCCAGGACGCAAGCGGAGAAGGAAGGG...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 90 bp CCTGCGCAGCACTGCGAGCTTCTGCTAAGGCCCTTCTCCAGACCCTaGGCCCTGGAGCAATATCCTCTTCAATTCCGTCACCATCACCAC +
Preference number: 5 (lower is better)
Translates to: PAQHCELLLRPFSRP*ALEQYPLQFRHHHH
Trigger: GTGGTGATGGTGACGGAATTGAAGAGGATATTGCTCCAGGGCTCAGGGTCTGGAGAAGGGCCTTAGCAGAAGCTCGCAGTGCTGCGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 90 bp ATTGGGAGGGCGACCCTTCCGGCGTTTCATCCTGGATTCCTCTCTTaGTCTGGGTCTATCTGGATTGGGTGGTCTTCCTCTTCGGCCGTC +
Preference number: 5 (lower is better)
Translates to: IGRATLPAFHPGFLS*SGSIWIGWSSSSAV
Trigger: GACGGCCGAAGAGGAAGACCACCCAATCCAGATAGACCCAGAGCAAGAGAGGAATCCAGGATGAAACGCCGGAAGGGTCGCCCTCCCAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 90 bp GTCATTGGGGAGAGGACTGTAGAACTTCCCACAACTGCCGGAGCCTaGGCTAAAGAGACTGGCGTCTGTCTTTCCCACGGGGCTTTGTGC +
Preference number: 5 (lower is better)
Translates to: VIGERTVELPTTAGA*AKETGVCLSHGALC
Trigger: GCACAAAGCCCCGTGGGAAAGACAGACGCCAGTCTCTTTAGCTCAGGCTCCGGCAGTTGTGGGAAGTTCTACAGTCCTCTCCCCAATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 90 bp TCGCTGATGCAACCCTCCGTTCCAAGTCCTCCACCTGCTGGAGTATaGTCAGGTCCAGCTCCATTGCTTGCTCTTCGACCGACCAGTTCT +
Preference number: 5 (lower is better)
Translates to: SLMQPSVPSPPPAGV*SGPAPLLALRPTSS
Trigger: AGAACTGGTCGGTCGAAGAGCAAGCAATGGAGCTGGACCTGAGCATACTCCAGCAGGTGGAGGACTTGGAACGGAGGGTTGCATCAGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS CCA 90 bp TGCAAACTCGCTGATGCAACCCTCCGTTCCAAGTCCTCCACCTGCTaGAGTATGCTCAGGTCCAGCTCCATTGCTTGCTCTTCGACCGAC +
Preference number: 5 (lower is better)
Translates to: CKLADATLRSKSSTC*SMLRSSSIACSSTD
Trigger: GTCGGTCGAAGAGCAAGCAATGGAGCTGGACCTGAGCATACTCCAGCAGGTGGAGGACTTGGAACGGAGGGTTGCATCAGCGAGTTTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS CCA 90 bp GTAATGGTGGAAAGAAGGGCGTTCCAGCACGAGAGTGGCCATCTGTaGTTCGCCACCACTCTGCACCAGACACTGAGTCAGGTGATACCT +
Preference number: 5 (lower is better)
Translates to: VMVERRAFQHESGHL*FATTLHQTLSQVIP
Trigger: AGGTATCACCTGACTCAGTGTCTGGTGCAGAGTGGTGGCGAACCACAGATGGCCACTCTCGTGCTGGAACGCCCTTCTTTCCACCATTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 90 bp GGAATTCCCAGTAATGGTGGAAAGAAGGGCGTTCCAGCACGAGAGTaGCCATCTGTGGTTCGCCACCACTCTGCACCAGACACTGAGTCA +
Preference number: 5 (lower is better)
Translates to: GIPSNGGKKGVPARE*PSVVRHHSAPDTES
Trigger: TGACTCAGTGTCTGGTGCAGAGTGGTGGCGAACCACAGATGGCCACTCTCGTGCTGGAACGCCCTTCTTTCCACCATTACTGGGAATTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 90 bp CTGCCTCAGCTTCTTCCCACACGGGGCATAATATGCAACTTCTCCTaGAAGGCGCCCACCAAAGTTTCTCACCCTTGTCTCCCTCTGCCA +
Preference number: 5 (lower is better)
Translates to: LPQLLPTRGIICNFS*KAPTKVSHPCLPLP
Trigger: TGGCAGAGGGAGACAAGGGTGAGAAACTTTGGTGGGCGCCTTCCAGGAGAAGTTGCATATTATGCCCCGTGTGGGAAGAAGCTGAGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGCCCTTCCTTCTCCGCTaGCGTCCTGGCGTGGGCGTG +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITPFLLR*RPGVGV
Trigger: CACGCCCACGCCAGGACGCAAGCGGAGAAGGAAGGG...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTCGGGGCTTTGTGCTGTaGTTGCTGAGGGAACGCTCC +
Preference number: 5 (lower is better)
Translates to: VTNGLGWRSEASKTGVILRGFVL*LLRERS
Trigger: GGAGCGTTCCCTCAGCAACAACAGCACAAAGCCCCG...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 90 bp AGTTTCTCACCCTTGTCTCCCTCTGCCAGCCATAGTCCAGAGGGATaGGCAGCTCCTGATCGTCTGCCACTCTTCTTCGTTTGGATGTAC +
Preference number: 5 (lower is better)
Translates to: SFSPLSPSASHSPEG*AAPDRLPLFFVWMY
Trigger: GTACATCCAAACGAAGAAGAGTGGCAGACGATCAGGAGCTGCGCATCCCTCTGGACTATGGCTGGCAGAGGGAGACAAGGGTGAGAAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 90 bp CATGTCAGGGCACTGCCTCAGCTTCTTCCCACACGGGGCATAATATaGAACTTCTCCTGGAAGGCGCCCACCAAAGTTTCTCACCCTTGT +
Preference number: 5 (lower is better)
Translates to: HVRALPQLLPTRGII*NFSWKAPTKVSHPC
Trigger: ACAAGGGTGAGAAACTTTGGTGGGCGCCTTCCAGGAGAAGTTGCATATTATGCCCCGTGTGGGAAGAAGCTGAGGCAGTGCCCTGACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 90 bp GGACTAGGAAAATCTACTGGCTTTGCTACTTCAACAGCCACTGGCTaGGCGCTGGAGGGTCTTTCAGCTGGAGGGACTGGAGAGTCACTT +
Preference number: 5 (lower is better)
Translates to: GLGKSTGFATSTATG*ALEGLSAGGTGESL
Trigger: AAGTGACTCTCCAGTCCCTCCAGCTGAAAGACCCTCCAGCGCTCAGCCAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTTTCCTAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 90 bp GAGAGCACAAGTCCCGGGATGCGAGGCCACTCTGGCAAGGGCTTTTaGTCTGCTAAGCACATGTCTTCCTTAGGTTTCTTTAGCTCCTTC +
Preference number: 5 (lower is better)
Translates to: ESTSPGMRGHSGKGF*SAKHMSSLGFFSSF
Trigger: GAAGGAGCTAAAGAAACCTAAGGAAGACATGTGCTTAGCAGACCAAAAGCCCTTGCCAGAGTGGCCTCGCATCCCGGGACTTGTGCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS CCA 90 bp TTTGGGACTAGGAAAATCTACTGGCTTTGCTACTTCAACAGCCACTaGCTGAGCGCTGGAGGGTCTTTCAGCTGGAGGGACTGGAGAGTC +
Preference number: 5 (lower is better)
Translates to: FGTRKIYWLCYFNSH*LSAGGSFSWRDWRV
Trigger: GACTCTCCAGTCCCTCCAGCTGAAAGACCCTCCAGCGCTCAGCCAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTTTCCTAGTCCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAACAAAGTTTCTCACCCTaGTCTCCCTCTGCCAGCCAT +
Preference number: 5 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKQSFSP*SPSASH
Trigger: ATGGCTGGCAGAGGGAGACAAGGGTGAGAAACTTTG...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 90 bp CTCTCAGTCAGCTCAGTCTGCCCACAGTGGGCCTCCATGAAAATCTaGAAAACCTCGGACACATTGTCTCGATTCACACCAACGTTCAGC +
Preference number: 5 (lower is better)
Translates to: LSVSSVCPQWASMKI*KTSDTLSRFTPTFS
Trigger: GCTGAACGTTGGTGTGAATCGAGACAATGTGTCCGAGGTTTTGCAGATTTTCATGGAGGCCCACTGTGGGCAGACTGAGCTGACTGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGCCACTCGTGCTCAGATaGACAGGTGAGGAGAACGGG +
Preference number: 5 (lower is better)
Translates to: WVRFPVLPKLADESHKPVPLVLR*TGEENG
Trigger: CCCGTTCTCCTCACCTGTCAATCTGAGCACGAGTGG...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAATCTGTTCTTTCTGTTaGCGCTTCTCTTCCGCAGCC +
Preference number: 5 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKICSFC*RFSSAA
Trigger: GGCTGCGGAAGAGAAGCGCAAACAGAAAGAACAGAT...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTCTCAACGCTGGCTGTTaGGTCACCTTCATCCTCATC +
Preference number: 5 (lower is better)
Translates to: VTNGLGWRSEASKTGVILLNAGC*VTFILI
Trigger: GATGAGGATGAAGGTGACCAAACAGCCAGCGTTGAG...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGCGGGGCTTTGTGCTGTaGTTGCTGAGGGAACGCTCC +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITRGFVL*LLRERS
Trigger: GGAGCGTTCCCTCAGCAACAACAGCACAAAGCCCCG...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 90 bp CTCAGGACCATTTCGACTGCTCTTCCCAGAAGTCCTCGAATGGAATaGCGAATCGTGATTCTGGGCTGGAGGAGCAAACAGTGGTGGAAT +
Preference number: 5 (lower is better)
Translates to: LRTISTALPRSPRME*RIVILGWRSKQWWN
Trigger: ATTCCACCACTGTTTGCTCCTCCAGCCCAGAATCACGATTCGTCATTCCATTCGAGGACTTCTGGGAAGAGCAGTCGAAATGGTCCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 90 bp TCTTCAGGCTCTCAGTCAGCTCAGTCTGCCCACAGTGGGCCTCCATaGAAATCTGCAAAACCTCGGACACATTGTCTCGATTCACACCAA +
Preference number: 5 (lower is better)
Translates to: SSGSQSAQSAHSGPP*KSAKPRTHCLDSHQ
Trigger: TTGGTGTGAATCGAGACAATGTGTCCGAGGTTTTGCAGATTTTCATGGAGGCCCACTGTGGGCAGACTGAGCTGACTGAGAGCCTGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 90 bp GAAAATCTACTGGCTTTGCTACTTCAACAGCCACTGGCTGAGCGCTaGAGGGTCTTTCAGCTGGAGGGACTGGAGAGTCACTTTTACTTG +
Preference number: 5 (lower is better)
Translates to: ENLLALLLQQPLAER*RVFQLEGLESHFYL
Trigger: CAAGTAAAAGTGACTCTCCAGTCCCTCCAGCTGAAAGACCCTCCAGCGCTCAGCCAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGCCACTCGTGCTCAGATaGACAGGTGAGGAGAACGGG +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITPLVLR*TGEENG
Trigger: CCCGTTCTCCTCACCTGTCAATCTGAGCACGAGTGG...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTTCCTGGATTCCTCTCTaGCTCTGGGTCTATCTGGAT +
Preference number: 5 (lower is better)
Translates to: VTNGLGWRSEASKTGVILSWIPL*LWVYLD
Trigger: ATCCAGATAGACCCAGAGCAAGAGAGGAATCCAGGA...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGCGTGCCCAAGGGGTGTaGTTCTTCCCCGAGGTCAAT +
Preference number: 5 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWRAQGV*FFPEVN
Trigger: ATTGACCTCGGGGAAGAACAACACCCCTTGGGCACG...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 90 bp GTATTCAATGTTCTTGTCAATCTCACTCACCACACTCTTGCTGCATaGCAGCTCGTTAACGAGGAAGGCCAGGATGGACGCTTTCTGTGC +
Preference number: 5 (lower is better)
Translates to: VFNVLVNLTHHTLAA*QLVNEEGQDGRFLC
Trigger: GCACAGAAAGCGTCCATCCTGGCCTTCCTCGTTAACGAGCTGGCATGCAGCAAGAGTGTGGTGAGTGAGATTGACAAGAACATTGAATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 90 bp CATTTCTTCTGGGATAGGTTTGGGACTAGGAAAATCTACTGGCTTTaGTACTTCAACAGCCACTGGCTGAGCGCTGGAGGGTCTTTCAGC +
Preference number: 5 (lower is better)
Translates to: HFFWDRFGTRKIYWL*YFNSHWLSAGGSFS
Trigger: GCTGAAAGACCCTCCAGCGCTCAGCCAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTTTCCTAGTCCCAAACCTATCCCAGAAGAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 90 bp GTTACAGCTATATCTAGGGGGTTGTCACTCTTCCGAGCCAGTGCATaGGCACTGTTTTCTTCGTCACCAGTAAGTTCTCCATCATGCTCC +
Preference number: 5 (lower is better)
Translates to: VTAISRGLSLFRASA*ALFSSSPVSSPSCS
Trigger: GGAGCATGATGGAGAACTTACTGGTGACGAAGAAAACAGTGCGCATGCACTGGCTCGGAAGAGTGACAACCCCCTAGATATAGCTGTAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS CCA 90 bp AAAGCTTTAGTCTTCAGGCTCTCAGTCAGCTCAGTCTGCCCACAGTaGGCCTCCATGAAAATCTGCAAAACCTCGGACACATTGTCTCGA +
Preference number: 5 (lower is better)
Translates to: KALVFRLSVSSVCPQ*ASMKICKTSDTLSR
Trigger: TCGAGACAATGTGTCCGAGGTTTTGCAGATTTTCATGGAGGCCCACTGTGGGCAGACTGAGCTGACTGAGAGCCTGAAGACTAAAGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 90 bp GAACTGCATTTCTTCTGGGATAGGTTTGGGACTAGGAAAATCTACTaGCTTTGCTACTTCAACAGCCACTGGCTGAGCGCTGGAGGGTCT +
Preference number: 5 (lower is better)
Translates to: ELHFFWDRFGTRKIY*LCYFNSHWLSAGGS
Trigger: AGACCCTCCAGCGCTCAGCCAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTTTCCTAGTCCCAAACCTATCCCAGAAGAAATGCAGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 90 bp TCTTCAGATACCTTCTCTCAATGTTCCGCTCCAAATCAGCCAGCCTaGTTACAGCTATATCTAGGGGGTTGTCACTCTTCCGAGCCAGTG +
Preference number: 5 (lower is better)
Translates to: SSDTFSQCSAPNQPA*LQLYLGGCHSSEPV
Trigger: CACTGGCTCGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAGAGAAGGTATCTGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 90 bp CCTCTTCAATTCTTCTCTCAATGTTCCGCTCCAAATCAGCCAGCCTaGTTACAGCTATATCTAGGGGGTTGTCACTCTTCCGAGCCAGTG +
Preference number: 5 (lower is better)
Translates to: PLQFFSQCSAPNQPA*LQLYLGGCHSSEPV
Trigger: CACTGGCTCGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAGAGAAGAATTGAAGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000130637.2
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGTTTTGGCAGAGGAGCTaGTCTGGGTCAGGTTCACGG +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITFWQRS*SGSGSR
Trigger: CCGTGAACCTGACCCAGACAAGCTCCTCTGCCAAAA...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGCAAAGTTTCTCACCCTaGTCTCCCTCTGCCAGCCAT +
Preference number: 5 (lower is better)
Translates to: WVRFPVLPKLADESHKPVQSFSP*SPSASH
Trigger: ATGGCTGGCAGAGGGAGACAAGGGTGAGAAACTTTG...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTCTGGGTCTATCTGGATaGGGTGGTCTTCCTCTTCGG +
Preference number: 5 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVLGLSG*GGLPLR
Trigger: CCGAAGAGGAAGACCACCCAATCCAGATAGACCCAG...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGTCACTCACCACACTCTaGCTGCATGCCAGCTCGTTA +
Preference number: 5 (lower is better)
Translates to: WVRFPVLPKLADESHKPVSLTTL*LHASSL
Trigger: TAACGAGCTGGCATGCAGCAAGAGTGTGGTGAGTGA...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGCGGAGGTGCAGCACTTaGAGCAATGTCTTCAGGTCC +
Preference number: 5 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWRRCST*SNVFRS
Trigger: GGACCTGAAGACATTGCTCAAAGTGCTGCACCTCCG...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 90 bp TGCCTTCTACAAAAATCCCTCCACATTGAGGGAGAATCCAGTATCTaGGTCGGTACCGATCCTGACCAAACATCATCGAGCGTAGTGAGT +
Preference number: 5 (lower is better)
Translates to: CLLQKSLHIEGESSI*VGTDPDQTSSSVVS
Trigger: ACTCACTACGCTCGATGATGTTTGGTCAGGATCGGTACCGACGCAGATACTGGATTCTCCCTCAATGTGGAGGGATTTTTGTAGAAGGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 90 bp AGTCACTTTTACTTGAAGCAACACTGGAAGTCAAGAATGAACTACTaGCATTTCCTTCTGGCAGTCCCAACCCTGAGCCGAGAGCAGGCA +
Preference number: 5 (lower is better)
Translates to: SHFYLKQHWKSRMNY*HFLLAVPTLSREQA
Trigger: TGCCTGCTCTCGGCTCAGGGTTGGGACTGCCAGAAGGAAATGGCAGTAGTTCATTCTTGACTTCCAGTGTTGCTTCAAGTAAAAGTGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 90 bp ACAAAGGTTTCACATTGGACACCAGTCCCGTCGACTGTATTACACTaGTGTGTTTGGTCACAGACTCCTCCTTTGCCTGAGAGCTTTGGA +
Preference number: 5 (lower is better)
Translates to: TKVSHWTPVPSTVLH*CVWSQTPPLPESFG
Trigger: TCCAAAGCTCTCAGGCAAAGGAGGAGTCTGTGACCAAACACACCAGTGTAATACAGTCGACGGGACTGGTGTCCAATGTGAAACCTTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 90 bp TTCACGGCAGGTTTCTCGCCTTCAGTGTCACTATCTGATTCCTCCTaGTCTTTCTCCTCGTCGTCTTCTGAGCCTTCTGAATCTGATTGT +
Preference number: 5 (lower is better)
Translates to: FTAGFSPSVSLSDSS*SFSSSSSEPSESDC
Trigger: ACAATCAGATTCAGAAGGCTCAGAAGACGACGAGGAGAAAGACCAGGAGGAATCAGATAGTGACACTGAAGGCGAGAAACCTGCCGTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 90 bp GTAATTTTGCATCTGTGTTATCTAGGAATTCTGCACTGCCAACATTaGGAGGGCGACCCTTCCGGCGTTTCATCCTGGATTCCTCTCTTG +
Preference number: 5 (lower is better)
Translates to: VILHLCYLGILHCQH*EGDPSGVSSWIPLL
Trigger: CAAGAGAGGAATCCAGGATGAAACGCCGGAAGGGTCGCCCTCCCAATGTTGGCAGTGCAGAATTCCTAGATAACACAGATGCAAAATTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS-3UTR CAA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGTCTGTCCCATGGAACTaGAAGCAGGAGTGGCTACTA +
Preference number: 5 (lower is better)
Translates to: WVRFPVLPKLADESHKPVSVPWN*KQEWLL
Trigger: TAGTAGCCACTCCTGCTTCAAGTTCCATGGGACAGA...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTCCTGGGCTTTTTCAGTaGCTTTCTGTCCATCTGTTT +
Preference number: 5 (lower is better)
Translates to: VTNGLGWRSEASKTGVILPGLFQ*LSVHLF
Trigger: AAACAGATGGACAGAAAGCAACTGAAAAAGCCCAGG...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGGACAAAGGTTTCACATaGGACACCAGTCCCGTCGAC +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITDKGFT*DTSPVD
Trigger: GTCGACGGGACTGGTGTCCAATGTGAAACCTTTGTC...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGTCGGCCTCCAATAATTaGGCATTTGCCGCTTCTTCC +
Preference number: 5 (lower is better)
Translates to: WVRFPVLPKLADESHKPVSASNN*AFAASS
Trigger: GGAAGAAGCGGCAAATGCCAAATTATTGGAGGCCGA...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAAAAAGCTTGCTTAACTaGGAGAAAGAGCCTGGTTTC +
Preference number: 5 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKKSLLN*EKEPGF
Trigger: GAAACCAGGCTCTTTCTCCAAGTTAAGCAAGCTTTT...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
49% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGGCTATATCTAGGGGGTaGTCACTCTTCCGAGCCAGT +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITAISRG*SLFRAS
Trigger: ACTGGCTCGGAAGAGTGACAACCCCCTAGATATAGC...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTGCTATATCTAGGGGGTaGTCACTCTTCCGAGCCAGT +
Preference number: 5 (lower is better)
Translates to: SLLLHYDTLSLENSLGALAISRG*SLFRAS
Trigger: ACTGGCTCGGAAGAGTGACAACCCCCTAGATATAGC...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 90 bp GGCTTGGGTAATGTAATCCAAGTGTTTCTGAATTTGCTTTTGCAATaGCTTTTCCCGGATCCCGCGGAGGTGCAGCACTTTGAGCAATGT +
Preference number: 5 (lower is better)
Translates to: GLGNVIQVFLNLLLQ*LFPDPAEVQHFEQC
Trigger: ACATTGCTCAAAGTGCTGCACCTCCGCGGGATCCGGGAAAAGGCATTGCAAAAGCAAATTCAGAAACACTTGGATTACATTACCCAAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS CCA 90 bp TGGAGCAATATCCTCTTCAATTCCGTCACCATCACCACTAATGGATaGTGCAGGAGCAGGGACAGTAACTGTGCCCACATTATCCAGTTT +
Preference number: 5 (lower is better)
Translates to: WSNILFNSVTITTNG*CRSRDSNCAHIIQF
Trigger: AAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGGAATTGAAGAGGATATTGCTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGTTCCTCCACCTGAGCTaGTGCTTTGGTTCTGTCCCA +
Preference number: 5 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMFLHLS*CFGSVP
Trigger: TGGGACAGAACCAAAGCACAAGCTCAGGTGGAGGAA...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTACTCTCCTCCACGCTTaGATCTTCTTCCTCTTCCTC +
Preference number: 5 (lower is better)
Translates to: SLLLHYDTLSLENSLGALTLLHA*IFFLFL
Trigger: GAGGAAGAGGAAGAAGATCAAAGCGTGGAGGAGAGT...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAAACTGGTGTCATTCTTACCTGGTTGTTACTTTaGTGTTGTGCTTCAGTCTCT +
Preference number: 5 (lower is better)
Translates to: VTNGLGWRSEASKTGVILTWLLL*CCASVS
Trigger: AGAGACTGAAGCACAACACAAAAGTAACAACCAGGT...AAGAATGACACCAGTTTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGGACAAAGGTTTCACATaGGACACCAGTCCCGTCGAC +
Preference number: 5 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMDKGFT*DTSPVD
Trigger: GTCGACGGGACTGGTGTCCAATGTGAAACCTTTGTC...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACTGGAGGGAGGGCTTTaGGCAGAGGAGCTTGTCTGG +
Preference number: 5 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQLEGGL*AEELVW
Trigger: CCAGACAAGCTCCTCTGCCAAAAGCCCTCCCTCCAG...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGTCCTGGATTCCTCTCTaGCTCTGGGTCTATCTGGAT +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITSWIPL*LWVYLD
Trigger: ATCCAGATAGACCCAGAGCAAGAGAGGAATCCAGGA...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTCGGCCTCCAATAATTaGGCATTTGCCGCTTCTTCC +
Preference number: 5 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWSASNN*AFAASS
Trigger: GGAAGAAGCGGCAAATGCCAAATTATTGGAGGCCGA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GAGTCACACAAACCAGTGACCAATGGGCTCGGCTGGAGGAGTGAAGCCTCTAAACTCATCACGTTTCTCTaGCTTCAATCGTTCTTTTTC +
Preference number: 5 (lower is better)
Translates to: ESHKPVTNGLGWRSEASKLITFL*LQSFFF
Trigger: GAAAAAGAACGATTGAAGCAAGAGAAACGTGATGAG...TTTAGAGGCTTCACTCCTCCAGCCGAGCCCATTGGTCACTGGTTTGTGTGACTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGTCTTTGCTTCCTCTCTaGAGGGAGCTGCTTGTGGAA +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITSLLPL*RELLVE
Trigger: TTCCACAAGCAGCTCCCTCAAGAGAGGAAGCAAAGA...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTCTGCTTTTGACAGGTaGAGGGAAGTGGTTTCCTCC +
Preference number: 5 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWSAFDR*REVVSS
Trigger: GGAGGAAACCACTTCCCTCAACCTGTCAAAAGCAGA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 90 bp CAAAGCCCAAAACTTTACCAAAGTTTCGTAAGAACTGCACCACCATaGGACAGTCTGAAAATGTGGTTCCAGAGAGCACAAGTCCCGGGA +
Preference number: 5 (lower is better)
Translates to: QSPKLYQSFVRTAPP*DSLKMWFQRAQVPG
Trigger: TCCCGGGACTTGTGCTCTCTGGAACCACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS GCA 90 bp TGTTTTGTTCCTGATGACATTTTAGGGTTCCTCCACCTGAGCTTGTaGTTTGGTTCTGTCCCATGGAACTTGAAGCAGGAGTGGCTACTA +
Preference number: 5 (lower is better)
Translates to: CFVPDDILGFLHLSL*FGSVPWNLKQEWLL
Trigger: TAGTAGCCACTCCTGCTTCAAGTTCCATGGGACAGAACCAAAGCACAAGCTCAGGTGGAGGAACCCTAAAATGTCATCAGGAACAAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 90 bp AGCAATATCCTCTTCAATTCCGTCACCATCACCACTAATGGATGGTaGAGGAGCAGGGACAGTAACTGTGCCCACATTATCCAGTTTGAT +
Preference number: 5 (lower is better)
Translates to: SNILFNSVTITTNGW*RSRDSNCAHIIQFD
Trigger: ATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGGAATTGAAGAGGATATTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 90 bp TTTCAGCTGGAGGGACTGGAGAGTCACTTTTACTTGAAGCAACACTaGAAGTCAAGAATGAACTACTGCCATTTCCTTCTGGCAGTCCCA +
Preference number: 5 (lower is better)
Translates to: FQLEGLESHFYLKQH*KSRMNYCHFLLAVP
Trigger: TGGGACTGCCAGAAGGAAATGGCAGTAGTTCATTCTTGACTTCCAGTGTTGCTTCAAGTAAAAGTGACTCTCCAGTCCCTCCAGCTGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGGGTGATACCTTGATCTaGGACTTCCCAGCTTCAAGT +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITGDTLI*DFPASS
Trigger: ACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACC...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCTTGGTTTCTTATCTTaGATTCTGTCGGCTCTGGCG +
Preference number: 5 (lower is better)
Translates to: SLLLHYDTLSLENSLGALLGFLS*ILSALA
Trigger: CGCCAGAGCCGACAGAATCAAAGATAAGAAACCAAG...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGGAGTCACTATCACTGTaGCTAGAACTTTCCATAGCC +
Preference number: 5 (lower is better)
Translates to: WVRFPVLPKLADESHKPVESLSL*LELSIA
Trigger: GGCTATGGAAAGTTCTAGCAACAGTGATAGTGACTC...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTCACAGACTCCTCCTTaGCCTGAGAGCTTTGGAAAA +
Preference number: 5 (lower is better)
Translates to: SLLLHYDTLSLENSLGALSQTPP*PESFGK
Trigger: TTTTCCAAAGCTCTCAGGCAAAGGAGGAGTCTGTGA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATCTGGAGGGAGGGCTTTaGGCAGAGGAGCTTGTCTGG +
Preference number: 5 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHLEGGL*AEELVW
Trigger: CCAGACAAGCTCCTCTGCCAAAAGCCCTCCCTCCAG...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGATCTGTTCTTTCTGTTaGCGCTTCTCTTCCGCAGCC +
Preference number: 5 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMICSFC*RFSSAA
Trigger: GGCTGCGGAAGAGAAGCGCAAACAGAAAGAACAGAT...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGAAAACCTCGGACACATaGTCTCGATTCACACCAACG +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITKTSDT*SRFTPT
Trigger: CGTTGGTGTGAATCGAGACAATGTGTCCGAGGTTTT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACCTCGGACACATaGTCTCGATTCACACCAACG +
Preference number: 5 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWKTSDT*SRFTPT
Trigger: CGTTGGTGTGAATCGAGACAATGTGTCCGAGGTTTT...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGGTTCCTGACACAGGCTaGGGTAATGTAATCCAAGTG +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITVPDTG*GNVIQV
Trigger: CACTTGGATTACATTACCCAAGCCTGTGTCAGGAAC...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGCCTGGGCTTTTTCAGTaGCTTTCTGTCCATCTGTTT +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITPGLFQ*LSVHLF
Trigger: AAACAGATGGACAGAAAGCAACTGAAAAAGCCCAGG...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATCGTGCCCAAGGGGTGTaGTTCTTCCCCGAGGTCAAT +
Preference number: 5 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHRAQGV*FFPEVN
Trigger: ATTGACCTCGGGGAAGAACAACACCCCTTGGGCACG...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGGAGAGTCACTTTTACTaGAAGCAACACTGGAAGTCA +
Preference number: 5 (lower is better)
Translates to: WVRFPVLPKLADESHKPVESHFY*KQHWKS
Trigger: TGACTTCCAGTGTTGCTTCAAGTAAAAGTGACTCTC...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGGAAAATCTACTGGCTTaGCTACTTCAACAGCCACTG +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITENLLA*LLQQPL
Trigger: CAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTTTC...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTTATATTGTTCCCGTTaGGATCGCAATTCACTGGTC +
Preference number: 5 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVLYCSR*DRNSLV
Trigger: GACCAGTGAATTGCGATCCAAACGGGAACAATATAA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGTTCTTGAATGACGCTTaGAATGACTCCATTTGGTTG +
Preference number: 5 (lower is better)
Translates to: WVRFPVLPKLADESHKPVFLNDA*NDSIWL
Trigger: CAACCAAATGGAGTCATTCAAAGCGTCATTCAAGAA...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGCTCTGCATTTTCGTTTaGGTAGTTAGTGCTAACGGA +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITLCIFV*VVSANG
Trigger: TCCGTTAGCACTAACTACCAAAACGAAAATGCAGAG...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTTTTGGCAGAGGAGCTaGTCTGGGTCAGGTTCACGG +
Preference number: 5 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHFWQRS*SGSGSR
Trigger: CCGTGAACCTGACCCAGACAAGCTCCTCTGCCAAAA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATCTGGGTCTATCTGGATaGGGTGGTCTTCCTCTTCGG +
Preference number: 5 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHLGLSG*GGLPLR
Trigger: CCGAAGAGGAAGACCACCCAATCCAGATAGACCCAG...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGCCAATAATTTGGCATTaGCCGCTTCTTCCTTCTTTT +
Preference number: 5 (lower is better)
Translates to: WVRFPVLPKLADESHKPVPIIWH*PLLPSF
Trigger: AAAAGAAGGAAGAAGCGGCAAATGCCAAATTATTGG...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAATCACTCACCACACTCTaGCTGCATGCCAGCTCGTTA +
Preference number: 5 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQSLTTL*LHASSL
Trigger: TAACGAGCTGGCATGCAGCAAGAGTGTGGTGAGTGA...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TGGGTGCGCTTCCCTGTTCTACCTAAATTAGCTGATGAGTCACACAAACCAGTGTCTGTACTGGCTCTGTaGTTTGCTCAGTTTTTCAAT +
Preference number: 5 (lower is better)
Translates to: WVRFPVLPKLADESHKPVSVLAL*FAQFFN
Trigger: ATTGAAAAACTGAGCAAACAACAGAGCCAGTACAGA...CACTGGTTTGTGTGACTCATCAGCTAATTTAGGTAGAACAGGGAAGCGCACCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTCAAATACTTCTTCTTaGATCTGGAGACTCTCTGCC +
Preference number: 5 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVSNTSS*IWRLSA
Trigger: GGCAGAGAGTCTCCAGATCAAAGAAGAAGTATTTGA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTCAAATACTTCTTCTTaGATCTGGAGACTCTCTGCC +
Preference number: 5 (lower is better)
Translates to: SLLLHYDTLSLENSLGALSNTSS*IWRLSA
Trigger: GGCAGAGAGTCTCCAGATCAAAGAAGAAGTATTTGA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAAGCTTGCTTAACTaGGAGAAAGAGCCTGGTTTC +
Preference number: 5 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWKSLLN*EKEPGF
Trigger: GAAACCAGGCTCTTTCTCCAAGTTAAGCAAGCTTTT...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGGCTACCTCTAAAAGCTaGCTTAACTTGGAGAAAGAG +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITATSKS*LNLEKE
Trigger: CTCTTTCTCCAAGTTAAGCAAGCTTTTAGAGGTAGC...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGTCTTCTGGGATAGGTTaGGGACTAGGAAAATCTACT +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITSSGIG*GLGKST
Trigger: AGTAGATTTTCCTAGTCCCAAACCTATCCCAGAAGA...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATCGGAGGTGCAGCACTTaGAGCAATGTCTTCAGGTCC +
Preference number: 5 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHRRCST*SNVFRS
Trigger: GGACCTGAAGACATTGCTCAAAGTGCTGCACCTCCG...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTCTCCATCATGCTCCTaGAACAACTTAGTAAGTGAC +
Preference number: 5 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVSPSCS*NNLVSD
Trigger: GTCACTTACTAAGTTGTTCAAGGAGCATGATGGAGA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTCTCCATCATGCTCCTaGAACAACTTAGTAAGTGAC +
Preference number: 5 (lower is better)
Translates to: SLLLHYDTLSLENSLGALSPSCS*NNLVSD
Trigger: GTCACTTACTAAGTTGTTCAAGGAGCATGATGGAGA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCTGGACTCATCTTTTTaGGGTTTCTTAATGGAGGTG +
Preference number: 5 (lower is better)
Translates to: SLLLHYDTLSLENSLGALLDSSF*GFLMEV
Trigger: CACCTCCATTAAGAAACCCAAAAAAGATGAGTCCAG...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAATCTGTCCCATGGAACTaGAAGCAGGAGTGGCTACTA +
Preference number: 5 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQSVPWN*KQEWLL
Trigger: TAGTAGCCACTCCTGCTTCAAGTTCCATGGGACAGA...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACCTGGTTGTTACTTTaGTGTTGTGCTTCAGTCTCT +
Preference number: 5 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMTWLLL*CCASVS
Trigger: AGAGACTGAAGCACAACACAAAAGTAACAACCAGGT...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTCTGTCCATCTGTTTTaGGGTCTGAAATACCATGTA +
Preference number: 5 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVSVHLF*GLKYHV
Trigger: TACATGGTATTTCAGACCCAAAAACAGATGGACAGA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGTTATATTGTTCCCGTTaGGATCGCAATTCACTGGTC +
Preference number: 5 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMLYCSR*DRNSLV
Trigger: GACCAGTGAATTGCGATCCAAACGGGAACAATATAA...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGTTCTTGAATGACGCTTaGAATGACTCCATTTGGTTG +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITFLNDA*NDSIWL
Trigger: CAACCAAATGGAGTCATTCAAAGCGTCATTCAAGAA...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTTTTTATTTGTGCTGCTaGTCTGGCTATTTCTTGAGC +
Preference number: 5 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVFYLCC*SGYFLS
Trigger: GCTCAAGAAATAGCCAGACAAGCAGCACAAATAAAA...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTCCCTGTTCCAATAATTTGGCATTaGCCGCTTCTTCCTTCTTTT +
Preference number: 5 (lower is better)
Translates to: YCTMTPFPWKTLWVRFPVPIIWH*PLLPSF
Trigger: AAAAGAAGGAAGAAGCGGCAAATGCCAAATTATTGG...AACAGGGAAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGCTCATCACGTTTCTCTaGCTTCAATCGTTCTTTTTC +
Preference number: 5 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWLITFL*LQSFFF
Trigger: GAAAAAGAACGATTGAAGCAAGAGAAACGTGATGAG...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATCTCAACGCTGGCTGTTaGGTCACCTTCATCCTCATC +
Preference number: 5 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHLNAGC*VTFILI
Trigger: GATGAGGATGAAGGTGACCAAACAGCCAGCGTTGAG...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGTCTGTACTGGCTCTGTaGTTTGCTCAGTTTTTCAAT +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITSVLAL*FAQFFN
Trigger: ATTGAAAAACTGAGCAAACAACAGAGCCAGTACAGA...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGAAAAATCCCTCCACATaGAGGGAGAATCCAGTATCT +
Preference number: 5 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMKNPST*RENPVS
Trigger: AGATACTGGATTCTCCCTCAATGTGGAGGGATTTTT...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGGAGAGTCACTTTTACTaGAAGCAACACTGGAAGTCA +
Preference number: 5 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMESHFY*KQHWKS
Trigger: TGACTTCCAGTGTTGCTTCAAGTAAAAGTGACTCTC...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTATTTTTCCCATGCTATaGATCTCTGTAACTGCTGGA +
Preference number: 5 (lower is better)
Translates to: SLLLHYDTLSLENSLGALIFPML*ISVTAG
Trigger: TCCAGCAGTTACAGAGATCAATAGCATGGGAAAAAT...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp GCCACAGTGTCGGTAGAGGATAATTACTGTACACGCTGTAGAGCTGTAATTACGATTTTTCCCATGCTATaGATCTCTGTAACTGCTGGA +
Preference number: 5 (lower is better)
Translates to: ATVSVEDNYCTRCRAVITIFPML*ISVTAG
Trigger: TCCAGCAGTTACAGAGATCAATAGCATGGGAAAAAT...CGTAATTACAGCTCTACAGCGTGTACAGTAATTATCCTCTACCGACACTGTGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 90 bp GTCACCAGTAAGTTCTCCATCATGCTCCTTGAACAACTTAGTAAGTaGCTTATGTTCAAAATATACCAAGTCCTCCCTTTCCGATGCAGG +
Preference number: 5 (lower is better)
Translates to: VTSKFSIMLLEQLSK*LMFKIYQVLPFRCR
Trigger: CCTGCATCGGAAAGGGAGGACTTGGTATATTTTGAACATAAGTCACTTACTAAGTTGTTCAAGGAGCATGATGGAGAACTTACTGGTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS GCA 90 bp TTAGGTTTCTTTAGCTCCTTCGCCATTTCTAACTCCAGTCTCCGCTaGTCTAGTTTGCGTTCCTTATTCAATCTTTTCTCATCACGTTTC +
Preference number: 5 (lower is better)
Translates to: LGFFSSFAISNSSLR*SSLRSLFNLFSSRF
Trigger: GAAACGTGATGAGAAAAGATTGAATAAGGAACGCAAACTAGAGCAGCGGAGACTGGAGTTAGAAATGGCGAAGGAGCTAAAGAAACCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS CCA 90 bp AAGTTTCCTTTTTGGCTTGATTTACCAAAGACAAAGGTTTCACATTaGACACCAGTCCCGTCGACTGTATTACACTGGTGTGTTTGGTCA +
Preference number: 5 (lower is better)
Translates to: KFPFWLDLPKTKVSH*TPVPSTVLHWCVWS
Trigger: TGACCAAACACACCAGTGTAATACAGTCGACGGGACTGGTGTCCAATGTGAAACCTTTGTCTTTGGTAAATCAAGCCAAAAAGGAAACTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAGGTGATACCTTGATCTaGGACTTCCCAGCTTCAAGT +
Preference number: 5 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQGDTLI*DFPASS
Trigger: ACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACC...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATACTCTCCTCCACGCTTaGATCTTCTTCCTCTTCCTC +
Preference number: 5 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHTLLHA*IFFLFL
Trigger: GAGGAAGAGGAAGAAGATCAAAGCGTGGAGGAGAGT...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGTCTGTCCATCTGTTTTaGGGTCTGAAATACCATGTA +
Preference number: 5 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMSVHLF*GLKYHV
Trigger: TACATGGTATTTCAGACCCAAAAACAGATGGACAGA...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAATCACAGACTCCTCCTTaGCCTGAGAGCTTTGGAAAA +
Preference number: 5 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQSQTPP*PESFGK
Trigger: TTTTCCAAAGCTCTCAGGCAAAGGAGGAGTCTGTGA...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCGTTGCTATTGCACTATGACACCCTTTCCTTGGAAAACTCTTTGGGTGCGCTTTCTCAAAAGTTTTATTaGTGCTGCTTGTCTGGCTAT +
Preference number: 5 (lower is better)
Translates to: SLLLHYDTLSLENSLGALSQKFY*CCLSGY
Trigger: ATAGCCAGACAAGCAGCACAAATAAAACTTTTGAGA...AAGCGCACCCAAAGAGTTTTCCAAGGAAAGGGTGTCATAGTGCAATAGCAACGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTCTTTGCTTCCTCTCTaGAGGGAGCTGCTTGTGGAA +
Preference number: 5 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHSLLPL*RELLVE
Trigger: TTCCACAAGCAGCTCCCTCAAGAGAGGAAGCAAAGA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTCTGCTTTTGACAGGTaGAGGGAAGTGGTTTCCTCC +
Preference number: 5 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHSAFDR*REVVSS
Trigger: GGAGGAAACCACTTCCCTCAACCTGTCAAAAGCAGA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGACACCCTTTCCTTGGTTAAATGTTTCACAGTaGTCAAAAACAAGCCTGACG +
Preference number: 5 (lower is better)
Translates to: QCGLIEFRCYCTMTPFPWLNVSQ*SKTSLT
Trigger: CGTCAGGCTTGTTTTTGACAACTGTGAAACATTTAA...CCAAGGAAAGGGTGTCATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 90 bp CACCCATGCTGTCCCCTATATTTAGCAATCCCTCTTGAAGAACACTaGGGTTTGGAACATCAATATTCACATCAAAGCCCAAAACTTTAC +
Preference number: 5 (lower is better)
Translates to: HPCCPLYLAIPLEEH*GLEHQYSHQSPKLY
Trigger: GTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTCAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS-3UTR CAA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATCTTGGTTTCTTATCTTaGATTCTGTCGGCTCTGGCG +
Preference number: 5 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHLGFLS*ILSALA
Trigger: CGCCAGAGCCGACAGAATCAAAGATAAGAAACCAAG...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp CTGGTGTTGGCTATTCAGTGCGGTTTGATAGAGTTTCGTTGCTATTGCACTATGTCTCAAAAGTTTTATTaGTGCTGCTTGTCTGGCTAT +
Preference number: 5 (lower is better)
Translates to: LVLAIQCGLIEFRCYCTMSQKFY*CCLSGY
Trigger: ATAGCCAGACAAGCAGCACAAATAAAACTTTTGAGA...CATAGTGCAATAGCAACGAAACTCTATCAAACCGCACTGAATAGCCAACACCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAGAAAATCTACTGGCTTaGCTACTTCAACAGCCACTG +
Preference number: 5 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQENLLA*LLQQPL
Trigger: CAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTTTC...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 90 bp AGATTTGTGTTATCTTTCTCTTTTGGGTCGTCTTTCTGCTCGCAGTaGTCTCTAATGGAACAGTTTAATGTCTCCGCAGAAGTCTCAAAT +
Preference number: 5 (lower is better)
Translates to: RFVLSFSFGSSFCSQ*SLMEQFNVSAEVSN
Trigger: ATTTGAGACTTCTGCGGAGACATTAAACTGTTCCATTAGAGATCACTGCGAGCAGAAAGACGACCCAAAAGAGAAAGATAACACAAATCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 90 bp AGTGCATGCGCACTGTTTTCTTCGTCACCAGTAAGTTCTCCATCATaGTCCTTGAACAACTTAGTAAGTGACTTATGTTCAAAATATACC +
Preference number: 5 (lower is better)
Translates to: SACALFSSSPVSSPS*SLNNLVSDLCSKYT
Trigger: GGTATATTTTGAACATAAGTCACTTACTAAGTTGTTCAAGGAGCATGATGGAGAACTTACTGGTGACGAAGAAAACAGTGCGCATGCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS-3UTR CAA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAAGCTACCTCTAAAAGCTaGCTTAACTTGGAGAAAGAG +
Preference number: 5 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQATSKS*LNLEKE
Trigger: CTCTTTCTCCAAGTTAAGCAAGCTTTTAGAGGTAGC...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAATCTTCTGGGATAGGTTaGGGACTAGGAAAATCTACT +
Preference number: 5 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQSSGIG*GLGKST
Trigger: AGTAGATTTTCCTAGTCCCAAACCTATCCCAGAAGA...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 90 bp TTCACTGGTCAAAGAACTAGACTCTTCAGAGGTATTTTTATTCCCTaGTTTAAGTACATCAGGAGAAGGAACTACGAGTTTCCTGTAAGT +
Preference number: 5 (lower is better)
Translates to: FTGQRTRLFRGIFIP*FKYIRRRNYEFPVS
Trigger: ACTTACAGGAAACTCGTAGTTCCTTCTCCTGATGTACTTAAAGCAGGGAATAAAAATACCTCTGAAGAGTCTAGTTCTTTGACCAGTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATCTCTGCATTTTCGTTTaGGTAGTTAGTGCTAACGGA +
Preference number: 5 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHLCIFV*VVSANG
Trigger: TCCGTTAGCACTAACTACCAAAACGAAAATGCAGAG...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp ACGTCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAATTTTATTTGTGCTGCTaGTCTGGCTATTTCTTGAGC +
Preference number: 5 (lower is better)
Translates to: TSIFHWLEIQFNYTSDAQFYLCC*SGYFLS
Trigger: GCTCAAGAAATAGCCAGACAAGCAGCACAAATAAAA...TTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGACGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS-3UTR CAA 90 bp TCAATTTTCCACTGGCTTGAGATACAATTTAACTACACAAGTGATGCGCAACATTTAAATGTTTCACAGTaGTCAAAAACAAGCCTGACG +
Preference number: 5 (lower is better)
Translates to: SIFHWLEIQFNYTSDAQHLNVSQ*SKTSLT
Trigger: CGTCAGGCTTGTTTTTGACAACTGTGAAACATTTAA...ATGTTGCGCATCACTTGTGTAGTTAAATTGTATCTCAAGCCAGTGGAAAATTGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 72 bp TCCACCAAGGCCGCGGCCGCTGCCGCCGGATGGGGGTaGTGGTGCGCTTTGAGCGGGGTTGCGTCATTGCTG +
Preference number: 6 (lower is better)
Translates to: STKAAAAAAGWG*WCALSGVASLL
Trigger: CAGCAATGACGCAACCCCGCTCAAAGCGCACCATCACCCCCATCCGGCGGCAGCGGCCGCGGCCTTGGTGGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp GCGTCATTGCTGACCCGCTTTTCCTTCCCACTGCTGTaGAGGATGGGCGAGGCAGAGGGCAGCGCTGGAGTC +
Preference number: 6 (lower is better)
Translates to: ASLLTRFSFPLL*RMGEAEGSAGV
Trigger: GACTCCAGCGCTGCCCTCTGCCTCGCCCATCCTGCACAGCAGTGGGAAGGAAAAGCGGGTCAGCAATGACGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp CTCCCTTCCTTCTCCGCTTGCGTCCTGGCGTGGGCGTaGCCAAGGGGTGTTGTTCTTCCCCGAGGTCAATGC +
Preference number: 6 (lower is better)
Translates to: LPSFSACVLAWA*PRGVVLPRGQC
Trigger: GCATTGACCTCGGGGAAGAACAACACCCCTTGGGCACGCCCACGCCAGGACGCAAGCGGAGAAGGAAGGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 72 bp AGAGGGTCCGAGCAGTGCAGCTGGGGCCGGCGAAGGTaGCTTAGATGGTGGCTGAGACTGAGGAGTCACCAG +
Preference number: 6 (lower is better)
Translates to: RGSEQCSWGRRR*LRWWLRLRSHQ
Trigger: CTGGTGACTCCTCAGTCTCAGCCACCATCTAAGTCACCTTCGCCGGCCCCAGCTGCACTGCTCGGACCCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 72 bp TGGCGTCTGTCTTTCCCACGGGGCTTTGTGCTGTTGTaGCTGAGGGAACGCTCCCCAGTGGATGCTTCCCGC +
Preference number: 6 (lower is better)
Translates to: WRLSFPRGFVLL*LRERSPVDASR
Trigger: GCGGGAAGCATCCACTGGGGAGCGTTCCCTCAGCAACAACAGCACAAAGCCCCGTGGGAAAGACAGACGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 72 bp GACTGGCGTCTGTCTTTCCCACGGGGCTTTGTGCTGTaGTTGCTGAGGGAACGCTCCCCAGTGGATGCTTCC +
Preference number: 6 (lower is better)
Translates to: DWRLSFPRGFVL*LLRERSPVDAS
Trigger: GGAAGCATCCACTGGGGAGCGTTCCCTCAGCAACAACAGCACAAAGCCCCGTGGGAAAGACAGACGCCAGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 90 bp CATTGGGAGGGCGACCCTTCCGGCGTTTCATCCTGGATTCCTCTCTaGCTCTGGGTCTATCTGGATTGGGTGGTCTTCCTCTTCGGCCGT +
Preference number: 6 (lower is better)
Translates to: HWEGDPSGVSSWIPL*LWVYLDWVVFLFGR
Trigger: ACGGCCGAAGAGGAAGACCACCCAATCCAGATAGACCCAGAGCAAGAGAGGAATCCAGGATGAAACGCCGGAAGGGTCGCCCTCCCAATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp CCCTTGTCTCCCTCTGCCAGCCATAGTCCAGAGGGATaGGCAGCTCCTGATCGTCTGCCACTCTTCTTCGTT +
Preference number: 6 (lower is better)
Translates to: PLSPSASHSPEG*AAPDRLPLFFV
Trigger: AACGAAGAAGAGTGGCAGACGATCAGGAGCTGCGCATCCCTCTGGACTATGGCTGGCAGAGGGAGACAAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp CAACCCTCCGTTCCAAGTCCTCCACCTGCTGGAGTATaGTCAGGTCCAGCTCCATTGCTTGCTCTTCGACCG +
Preference number: 6 (lower is better)
Translates to: QPSVPSPPPAGV*SGPAPLLALRP
Trigger: CGGTCGAAGAGCAAGCAATGGAGCTGGACCTGAGCATACTCCAGCAGGTGGAGGACTTGGAACGGAGGGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS CCA 72 bp GAAAGAAGGGCGTTCCAGCACGAGAGTGGCCATCTGTaGTTCGCCACCACTCTGCACCAGACACTGAGTCAG +
Preference number: 6 (lower is better)
Translates to: ERRAFQHESGHL*FATTLHQTLSQ
Trigger: CTGACTCAGTGTCTGGTGCAGAGTGGTGGCGAACCACAGATGGCCACTCTCGTGCTGGAACGCCCTTCTTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 72 bp AGACTGGAGGGAGGGCTTTTGGCAGAGGAGCTTGTCTaGGTCAGGTTCACGGCAGGTTTCTCGCCTTCAGTG +
Preference number: 6 (lower is better)
Translates to: RLEGGLLAEELV*VRFTAGFSPSV
Trigger: CACTGAAGGCGAGAAACCTGCCGTGAACCTGACCCAGACAAGCTCCTCTGCCAAAAGCCCTCCCTCCAGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 72 bp CTTCTCCTGGAAGGCGCCCACCAAAGTTTCTCACCCTaGTCTCCCTCTGCCAGCCATAGTCCAGAGGGATGC +
Preference number: 6 (lower is better)
Translates to: LLLEGAHQSFSP*SPSASHSPEGC
Trigger: GCATCCCTCTGGACTATGGCTGGCAGAGGGAGACAAGGGTGAGAAACTTTGGTGGGCGCCTTCCAGGAGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 72 bp GAGCCGAGAGCAGGCAAAGGTGATGTAAATGGGACGTaGGAAGCGAGCACTCCAGCAGGCCACCCACAGAAC +
Preference number: 6 (lower is better)
Translates to: EPRAGKGDVNGT*EASTPAGHPQN
Trigger: GTTCTGTGGGTGGCCTGCTGGAGTGCTCGCTTCCAACGTCCCATTTACATCACCTTTGCCTGCTCTCGGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 72 bp GAGAGGACTGTAGAACTTCCCACAACTGCCGGAGCCTaGGCTAAAGAGACTGGCGTCTGTCTTTCCCACGGG +
Preference number: 6 (lower is better)
Translates to: ERTVELPTTAGA*AKETGVCLSHG
Trigger: CCCGTGGGAAAGACAGACGCCAGTCTCTTTAGCTCAGGCTCCGGCAGTTGTGGGAAGTTCTACAGTCCTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp TGCTTTTGCAATGCCTTTTCCCGGATCCCGCGGAGGTaGAGCACTTTGAGCAATGTCTTCAGGTCCTCGGGG +
Preference number: 6 (lower is better)
Translates to: CFCNAFSRIPRR*STLSNVFRSSG
Trigger: CCCCGAGGACCTGAAGACATTGCTCAAAGTGCTGCACCTCCGCGGGATCCGGGAAAAGGCATTGCAAAAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS GCA 72 bp ACCTGCTGGAGTATGCTCAGGTCCAGCTCCATTGCTTaGTCTTCGACCGACCAGTTCTCCACTAGATCGCGG +
Preference number: 6 (lower is better)
Translates to: TCWSMLRSSSIA*SSTDQFSTRSR
Trigger: CCGCGATCTAGTGGAGAACTGGTCGGTCGAAGAGCAAGCAATGGAGCTGGACCTGAGCATACTCCAGCAGGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS CCA 72 bp AGTAATGGTGGAAAGAAGGGCGTTCCAGCACGAGAGTaGCCATCTGTGGTTCGCCACCACTCTGCACCAGAC +
Preference number: 6 (lower is better)
Translates to: SNGGKKGVPARE*PSVVRHHSAPD
Trigger: GTCTGGTGCAGAGTGGTGGCGAACCACAGATGGCCACTCTCGTGCTGGAACGCCCTTCTTTCCACCATTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 72 bp GCTGATGCAACCCTCCGTTCCAAGTCCTCCACCTGCTaGAGTATGCTCAGGTCCAGCTCCATTGCTTGCTCT +
Preference number: 6 (lower is better)
Translates to: ADATLRSKSSTC*SMLRSSSIACS
Trigger: AGAGCAAGCAATGGAGCTGGACCTGAGCATACTCCAGCAGGTGGAGGACTTGGAACGGAGGGTTGCATCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS CAA 72 bp GGCGACCCTTCCGGCGTTTCATCCTGGATTCCTCTCTaGCTCTGGGTCTATCTGGATTGGGTGGTCTTCCTC +
Preference number: 6 (lower is better)
Translates to: GDPSGVSSWIPL*LWVYLDWVVFL
Trigger: GAGGAAGACCACCCAATCCAGATAGACCCAGAGCAAGAGAGGAATCCAGGATGAAACGCCGGAAGGGTCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 90 bp AATATGCAACTTCTCCTGGAAGGCGCCCACCAAAGTTTCTCACCCTaGTCTCCCTCTGCCAGCCATAGTCCAGAGGGATGCGCAGCTCCT +
Preference number: 6 (lower is better)
Translates to: NMQLLLEGAHQSFSP*SPSASHSPEGCAAP
Trigger: AGGAGCTGCGCATCCCTCTGGACTATGGCTGGCAGAGGGAGACAAGGGTGAGAAACTTTGGTGGGCGCCTTCCAGGAGAAGTTGCATATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 90 bp GTTCCAAGTCCTCCACCTGCTGGAGTATGCTCAGGTCCAGCTCCATaGCTTGCTCTTCGACCGACCAGTTCTCCACTAGATCGCGGGTTA +
Preference number: 6 (lower is better)
Translates to: VPSPPPAGVCSGPAP*LALRPTSSPLDRGL
Trigger: TAACCCGCGATCTAGTGGAGAACTGGTCGGTCGAAGAGCAAGCAATGGAGCTGGACCTGAGCATACTCCAGCAGGTGGAGGACTTGGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS TCA 72 bp CACTGCGAGCTTCTGCTAAGGCCCTTCTCCAGACCCTaGGCCCTGGAGCAATATCCTCTTCAATTCCGTCAC +
Preference number: 6 (lower is better)
Translates to: HCELLLRPFSRP*ALEQYPLQFRH
Trigger: GTGACGGAATTGAAGAGGATATTGCTCCAGGGCTCAGGGTCTGGAGAAGGGCCTTAGCAGAAGCTCGCAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp GCGACCCTTCCGGCGTTTCATCCTGGATTCCTCTCTTaGTCTGGGTCTATCTGGATTGGGTGGTCTTCCTCT +
Preference number: 6 (lower is better)
Translates to: ATLPAFHPGFLS*SGSIWIGWSSS
Trigger: AGAGGAAGACCACCCAATCCAGATAGACCCAGAGCAAGAGAGGAATCCAGGATGAAACGCCGGAAGGGTCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp CTGAAAATGTGGTTCCAGAGAGCACAAGTCCCGGGATaGGAGGCCACTCTGGCAAGGGCTTTTGGTCTGCTA +
Preference number: 6 (lower is better)
Translates to: LKMWFQRAQVPG*EATLARAFGLL
Trigger: TAGCAGACCAAAAGCCCTTGCCAGAGTGGCCTCGCATCCCGGGACTTGTGCTCTCTGGAACCACATTTTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS GCA 72 bp ATTGATCTCTGTAACTGCTGGATGCACAGGGCTACCTaGGCAGCACTGCGAGCTTCTGCTAAGGCCCTTCTC +
Preference number: 6 (lower is better)
Translates to: IDLCNCWMHRAT*AALRASAKALL
Trigger: GAGAAGGGCCTTAGCAGAAGCTCGCAGTGCTGCGCAGGTAGCCCTGTGCATCCAGCAGTTACAGAGATCAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS GCA 72 bp TGCTGCCGCCTTCGCTCCCGTTCCATATCTAGTCTATaGCTCTCCAACTCCTGGTGTTTCAGAAGGACAGCC +
Preference number: 6 (lower is better)
Translates to: CCRLRSRSISSL*LSNSWCFRRTA
Trigger: GGCTGTCCTTCTGAAACACCAGGAGTTGGAGAGGCATAGACTAGATATGGAACGGGAGCGAAGGCGGCAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153136.2
CDS CAA 72 bp CCTCCACCTGCTGGAGTATGCTCAGGTCCAGCTCCATaGCTTGCTCTTCGACCGACCAGTTCTCCACTAGAT +
Preference number: 6 (lower is better)
Translates to: PPPAGVCSGPAP*LALRPTSSPLD
Trigger: ATCTAGTGGAGAACTGGTCGGTCGAAGAGCAAGCAATGGAGCTGGACCTGAGCATACTCCAGCAGGTGGAGG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS TCA 72 bp AAATCTACTGGCTTTGCTACTTCAACAGCCACTGGCTaGGCGCTGGAGGGTCTTTCAGCTGGAGGGACTGGA +
Preference number: 6 (lower is better)
Translates to: KSTGFATSTATG*ALEGLSAGGTG
Trigger: TCCAGTCCCTCCAGCTGAAAGACCCTCCAGCGCTCAGCCAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp GTTCTTGTCAATCTCACTCACCACACTCTTGCTGCATaGCAGCTCGTTAACGAGGAAGGCCAGGATGGACGC +
Preference number: 6 (lower is better)
Translates to: VLVNLTHHTLAA*QLVNEEGQDGR
Trigger: GCGTCCATCCTGGCCTTCCTCGTTAACGAGCTGGCATGCAGCAAGAGTGTGGTGAGTGAGATTGACAAGAAC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 72 bp GTCTTCAGGCTCTCAGTCAGCTCAGTCTGCCCACAGTaGGCCTCCATGAAAATCTGCAAAACCTCGGACACA +
Preference number: 6 (lower is better)
Translates to: VFRLSVSSVCPQ*ASMKICKTSDT
Trigger: TGTGTCCGAGGTTTTGCAGATTTTCATGGAGGCCCACTGTGGGCAGACTGAGCTGACTGAGAGCCTGAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 72 bp AGGAAAATCTACTGGCTTTGCTACTTCAACAGCCACTaGCTGAGCGCTGGAGGGTCTTTCAGCTGGAGGGAC +
Preference number: 6 (lower is better)
Translates to: RKIYWLCYFNSH*LSAGGSFSWRD
Trigger: GTCCCTCCAGCTGAAAGACCCTCCAGCGCTCAGCCAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 72 bp AATGCCTTTTCCCGGATCCCGCGGAGGTGCAGCACTTaGAGCAATGTCTTCAGGTCCTCGGGGTCAATGATT +
Preference number: 6 (lower is better)
Translates to: NAFSRIPRRCST*SNVFRSSGSMI
Trigger: AATCATTGACCCCGAGGACCTGAAGACATTGCTCAAAGTGCTGCACCTCCGCGGGATCCGGGAAAAGGCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS CAA 90 bp GTGGTTCGCCACCACTCTGCACCAGACACTGAGTCAGGTGATACCTaGATCTTGGACTTCCCAGCTTCAAGTACACATGGGCTGGCTGTA +
Preference number: 6 (lower is better)
Translates to: VVRHHSAPDTESGDT*ILDFPASSTHGLAV
Trigger: TACAGCCAGCCCATGTGTACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACCTGACTCAGTGTCTGGTGCAGAGTGGTGGCGAACCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 72 bp CACTGCGAGCTTCTGCTAAGGCCCTTCTCCAGACCCTaGGCCCTGGAGCAATATCCTCTTCAATTCTTCTCT +
Preference number: 6 (lower is better)
Translates to: HCELLLRPFSRP*ALEQYPLQFFS
Trigger: AGAGAAGAATTGAAGAGGATATTGCTCCAGGGCTCAGGGTCTGGAGAAGGGCCTTAGCAGAAGCTCGCAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130637.2
CDS GCA 72 bp CTCGTTAACGAGGAAGGCCAGGATGGACGCTTTCTGTaGTGGAGTGTGAGCCTGGAAAGCTTTAGTCTTCAG +
Preference number: 6 (lower is better)
Translates to: LVNEEGQDGRFL*WSVSLESFSLQ
Trigger: CTGAAGACTAAAGCTTTCCAGGCTCACACTCCAGCACAGAAAGCGTCCATCCTGGCCTTCCTCGTTAACGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 72 bp GTTAACGAGGAAGGCCAGGATGGACGCTTTCTGTGCTaGAGTGTGAGCCTGGAAAGCTTTAGTCTTCAGGCT +
Preference number: 6 (lower is better)
Translates to: VNEEGQDGRFLC*SVSLESFSLQA
Trigger: AGCCTGAAGACTAAAGCTTTCCAGGCTCACACTCCAGCACAGAAAGCGTCCATCCTGGCCTTCCTCGTTAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 72 bp GCATCTGTGTTATCTAGGAATTCTGCACTGCCAACATaGGGAGGGCGACCCTTCCGGCGTTTCATCCTGGAT +
Preference number: 6 (lower is better)
Translates to: ASVLSRNSALPT*GGRPFRRFILD
Trigger: ATCCAGGATGAAACGCCGGAAGGGTCGCCCTCCCAATGTTGGCAGTGCAGAATTCCTAGATAACACAGATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS CAA 90 bp CGCCACCACTCTGCACCAGACACTGAGTCAGGTGATACCTTGATCTaGGACTTCCCAGCTTCAAGTACACATGGGCTGGCTGTAGAACTA +
Preference number: 6 (lower is better)
Translates to: RHHSAPDTESGDTLI*DFPASSTHGLAVEL
Trigger: TAGTTCTACAGCCAGCCCATGTGTACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACCTGACTCAGTGTCTGGTGCAGAGTGGTGGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 90 bp TTCCGCTCCAAATCAGCCAGCCTGGTTACAGCTATATCTAGGGGGTaGTCACTCTTCCGAGCCAGTGCATGCGCACTGTTTTCTTCGTCA +
Preference number: 6 (lower is better)
Translates to: FRSKSASLVTAISRG*SLFRASACALFSSS
Trigger: TGACGAAGAAAACAGTGCGCATGCACTGGCTCGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS TCA 72 bp ACCACTCTGCACCAGACACTGAGTCAGGTGATACCTTaGTCTTGGACTTCCCAGCTTCAAGTACACATGGGC +
Preference number: 6 (lower is better)
Translates to: TTLHQTLSQVIP*SWTSQLQVHMG
Trigger: GCCCATGTGTACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACCTGACTCAGTGTCTGGTGCAGAGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 72 bp TCTCAGTCAGCTCAGTCTGCCCACAGTGGGCCTCCATaGAAATCTGCAAAACCTCGGACACATTGTCTCGAT +
Preference number: 6 (lower is better)
Translates to: SQSAQSAHSGPP*KSAKPRTHCLD
Trigger: ATCGAGACAATGTGTCCGAGGTTTTGCAGATTTTCATGGAGGCCCACTGTGGGCAGACTGAGCTGACTGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp AGCTCAGTCTGCCCACAGTGGGCCTCCATGAAAATCTaGAAAACCTCGGACACATTGTCTCGATTCACACCA +
Preference number: 6 (lower is better)
Translates to: SSVCPQWASMKI*KTSDTLSRFTP
Trigger: TGGTGTGAATCGAGACAATGTGTCCGAGGTTTTGCAGATTTTCATGGAGGCCCACTGTGGGCAGACTGAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 72 bp TCACATTGGACACCAGTCCCGTCGACTGTATTACACTaGTGTGTTTGGTCACAGACTCCTCCTTTGCCTGAG +
Preference number: 6 (lower is better)
Translates to: SHWTPVPSTVLH*CVWSQTPPLPE
Trigger: CTCAGGCAAAGGAGGAGTCTGTGACCAAACACACCAGTGTAATACAGTCGACGGGACTGGTGTCCAATGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 72 bp CATCTGTGTTATCTAGGAATTCTGCACTGCCAACATTaGGAGGGCGACCCTTCCGGCGTTTCATCCTGGATT +
Preference number: 6 (lower is better)
Translates to: HLCYLGILHCQH*EGDPSGVSSWI
Trigger: AATCCAGGATGAAACGCCGGAAGGGTCGCCCTCCCAATGTTGGCAGTGCAGAATTCCTAGATAACACAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS CAA 72 bp TCTGCACCAGACACTGAGTCAGGTGATACCTTGATCTaGGACTTCCCAGCTTCAAGTACACATGGGCTGGCT +
Preference number: 6 (lower is better)
Translates to: SAPDTESGDTLI*DFPASSTHGLA
Trigger: AGCCAGCCCATGTGTACTTGAAGCTGGGAAGTCCAAGATCAAGGTATCACCTGACTCAGTGTCTGGTGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 72 bp AAATCAGCCAGCCTGGTTACAGCTATATCTAGGGGGTaGTCACTCTTCCGAGCCAGTGCATGCGCACTGTTT +
Preference number: 6 (lower is better)
Translates to: KSASLVTAISRG*SLFRASACALF
Trigger: AAACAGTGCGCATGCACTGGCTCGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS CAA 90 bp TGCCCACAGTGGGCCTCCATGAAAATCTGCAAAACCTCGGACACATaGTCTCGATTCACACCAACGTTCAGCAAATGTTCTCCCAGAGCT +
Preference number: 6 (lower is better)
Translates to: CPQWASMKICKTSDT*SRFTPTFSKCSPRA
Trigger: AGCTCTGGGAGAACATTTGCTGAACGTTGGTGTGAATCGAGACAATGTGTCCGAGGTTTTGCAGATTTTCATGGAGGCCCACTGTGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 72 bp ATTTCGACTGCTCTTCCCAGAAGTCCTCGAATGGAATaGCGAATCGTGATTCTGGGCTGGAGGAGCAAACAG +
Preference number: 6 (lower is better)
Translates to: ISTALPRSPRME*RIVILGWRSKQ
Trigger: CTGTTTGCTCCTCCAGCCCAGAATCACGATTCGTCATTCCATTCGAGGACTTCTGGGAAGAGCAGTCGAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS TCA 72 bp CCACTTTCCATGCCTTCTACAAAAATCCCTCCACATTaGGGGAGAATCCAGTATCTGCGTCGGTACCGATCC +
Preference number: 6 (lower is better)
Translates to: PLSMPSTKIPPH*GRIQYLRRYRS
Trigger: GGATCGGTACCGACGCAGATACTGGATTCTCCCTCAATGTGGAGGGATTTTTGTAGAAGGCATGGAAAGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp CCTGATGACATTTTAGGGTTCCTCCACCTGAGCTTGTaGTTTGGTTCTGTCCCATGGAACTTGAAGCAGGAG +
Preference number: 6 (lower is better)
Translates to: PDDILGFLHLSL*FGSVPWNLKQE
Trigger: CTCCTGCTTCAAGTTCCATGGGACAGAACCAAAGCACAAGCTCAGGTGGAGGAACCCTAAAATGTCATCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp ATCTGGATTGGGTGGTCTTCCTCTTCGGCCGTCCATTaGCCTGATACGAGGAATGACATCCTCTTCTTTCAA +
Preference number: 6 (lower is better)
Translates to: IWIGWSSSSAVH*PDTRNDILFFQ
Trigger: TTGAAAGAAGAGGATGTCATTCCTCGTATCAGGGCAATGGACGGCCGAAGAGGAAGACCACCCAATCCAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp AAAGCTTTAGTCTTCAGGCTCTCAGTCAGCTCAGTCTaGCCACAGTGGGCCTCCATGAAAATCTGCAAAACC +
Preference number: 6 (lower is better)
Translates to: KALVFRLSVSSV*PQWASMKICKT
Trigger: GGTTTTGCAGATTTTCATGGAGGCCCACTGTGGGCAGACTGAGCTGACTGAGAGCCTGAAGACTAAAGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp CAAAAATCCCTCCACATTGAGGGAGAATCCAGTATCTaGGTCGGTACCGATCCTGACCAAACATCATCGAGC +
Preference number: 6 (lower is better)
Translates to: QKSLHIEGESSI*VGTDPDQTSSS
Trigger: GCTCGATGATGTTTGGTCAGGATCGGTACCGACGCAGATACTGGATTCTCCCTCAATGTGGAGGGATTTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp ATATCTAGGGGGTTGTCACTCTTCCGAGCCAGTGCATaGGCACTGTTTTCTTCGTCACCAGTAAGTTCTCCA +
Preference number: 6 (lower is better)
Translates to: ISRGLSLFRASA*ALFSSSPVSSP
Trigger: TGGAGAACTTACTGGTGACGAAGAAAACAGTGCGCATGCACTGGCTCGGAAGAGTGACAACCCCCTAGATAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS GCA 72 bp CTCTTCAATTCCGTCACCATCACCACTAATGGATGGTaGAGGAGCAGGGACAGTAACTGTGCCCACATTATC +
Preference number: 6 (lower is better)
Translates to: LFNSVTITTNGW*RSRDSNCAHII
Trigger: GATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGGAATTGAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 72 bp TTCCTCCACCTGAGCTTGTGCTTTGGTTCTGTCCCATaGAACTTGAAGCAGGAGTGGCTACTACAGATGCAT +
Preference number: 6 (lower is better)
Translates to: FLHLSLCFGSVP*NLKQEWLLQMH
Trigger: ATGCATCTGTAGTAGCCACTCCTGCTTCAAGTTCCATGGGACAGAACCAAAGCACAAGCTCAGGTGGAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 72 bp GGTTTCTCGCCTTCAGTGTCACTATCTGATTCCTCCTaGTCTTTCTCCTCGTCGTCTTCTGAGCCTTCTGAA +
Preference number: 6 (lower is better)
Translates to: GFSPSVSLSDSS*SFSSSSSEPSE
Trigger: TTCAGAAGGCTCAGAAGACGACGAGGAGAAAGACCAGGAGGAATCAGATAGTGACACTGAAGGCGAGAAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 72 bp ACCTTCTCTCAATGTTCCGCTCCAAATCAGCCAGCCTaGTTACAGCTATATCTAGGGGGTTGTCACTCTTCC +
Preference number: 6 (lower is better)
Translates to: TFSQCSAPNQPA*LQLYLGGCHSS
Trigger: GGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAGAGAAGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 72 bp ATTGATTTTTCCCATGCTATTGATCTCTGTAACTGCTaGATGCACAGGGCTACCTGCGCAGCACTGCGAGCT +
Preference number: 6 (lower is better)
Translates to: IDFSHAIDLCNC*MHRATCAALRA
Trigger: AGCTCGCAGTGCTGCGCAGGTAGCCCTGTGCATCCAGCAGTTACAGAGATCAATAGCATGGGAAAAATCAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS CAA 90 bp TTCTGTCCCATGGAACTTGAAGCAGGAGTGGCTACTACAGATGCATaGACACCAAGTACTGATGCTGCACTGGTTCCATTAACCGACCCA +
Preference number: 6 (lower is better)
Translates to: FCPMELEAGVATTDA*TPSTDAALVPLTDP
Trigger: TGGGTCGGTTAATGGAACCAGTGCAGCATCAGTACTTGGTGTCAATGCATCTGTAGTAGCCACTCCTGCTTCAAGTTCCATGGGACAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 90 bp GACACAGGCTTGGGTAATGTAATCCAAGTGTTTCTGAATTTGCTTTaGCAATGCCTTTTCCCGGATCCCGCGGAGGTGCAGCACTTTGAG +
Preference number: 6 (lower is better)
Translates to: DTGLGNVIQVFLNLL*QCLFPDPAEVQHFE
Trigger: CTCAAAGTGCTGCACCTCCGCGGGATCCGGGAAAAGGCATTGCAAAAGCAAATTCAGAAACACTTGGATTACATTACCCAAGCCTGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS TCA 72 bp ACACTGGTGTGTTTGGTCACAGACTCCTCCTTTGCCTaGGAGCTTTGGAAAATAAACGGAAGCTGCTGTGAG +
Preference number: 6 (lower is better)
Translates to: TLVCLVTDSSFA*ELWKINGSCCE
Trigger: CTCACAGCAGCTTCCGTTTATTTTCCAAAGCTCTCAGGCAAAGGAGGAGTCTGTGACCAAACACACCAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp TACTTGAAGCAACACTGGAAGTCAAGAATGAACTACTaGCATTTCCTTCTGGCAGTCCCAACCCTGAGCCGA +
Preference number: 6 (lower is better)
Translates to: YLKQHWKSRMNY*HFLLAVPTLSR
Trigger: TCGGCTCAGGGTTGGGACTGCCAGAAGGAAATGGCAGTAGTTCATTCTTGACTTCCAGTGTTGCTTCAAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp TTACGAGCTTCCATAGCTTTCATAAGCATCACATGCTaGCGCCTTCGCTCCCGTTCCATATCTAGTCTATGC +
Preference number: 6 (lower is better)
Translates to: LRASIAFISITC*RLRSRSISSLC
Trigger: GCATAGACTAGATATGGAACGGGAGCGAAGGCGGCAGCATGTGATGCTTATGAAAGCTATGGAAGCTCGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153136.2
CDS CCA 72 bp TTCTTCTCTCAATGTTCCGCTCCAAATCAGCCAGCCTaGTTACAGCTATATCTAGGGGGTTGTCACTCTTCC +
Preference number: 6 (lower is better)
Translates to: FFSQCSAPNQPA*LQLYLGGCHSS
Trigger: GGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAGAGAAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000130637.2
CDS CAA 72 bp ACCACTTTCCATGCCTTCTACAAAAATCCCTCCACATaGAGGGAGAATCCAGTATCTGCGTCGGTACCGATC +
Preference number: 6 (lower is better)
Translates to: TTFHAFYKNPST*RENPVSASVPI
Trigger: GATCGGTACCGACGCAGATACTGGATTCTCCCTCAATGTGGAGGGATTTTTGTAGAAGGCATGGAAAGTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 90 bp AGTAATTTTGCATCTGTGTTATCTAGGAATTCTGCACTGCCAACATaGGGAGGGCGACCCTTCCGGCGTTTCATCCTGGATTCCTCTCTT +
Preference number: 6 (lower is better)
Translates to: SNFASVLSRNSALPT*GGRPFRRFILDSSL
Trigger: AAGAGAGGAATCCAGGATGAAACGCCGGAAGGGTCGCCCTCCCAATGTTGGCAGTGCAGAATTCCTAGATAACACAGATGCAAAATTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS CAA 90 bp CGCTGGAGGGTCTTTCAGCTGGAGGGACTGGAGAGTCACTTTTACTaGAAGCAACACTGGAAGTCAAGAATGAACTACTGCCATTTCCTT +
Preference number: 6 (lower is better)
Translates to: RWRVFQLEGLESHFY*KQHWKSRMNYCHFL
Trigger: AAGGAAATGGCAGTAGTTCATTCTTGACTTCCAGTGTTGCTTCAAGTAAAAGTGACTCTCCAGTCCCTCCAGCTGAAAGACCCTCCAGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 90 bp GTCAGGATCATACTGCAGAGAGCCAGGTCCCTGGACTCATCTTTTTaGGGTTTCTTAATGGAGGTGGTGCTTTCTGCTTTTGACAGGTTG +
Preference number: 6 (lower is better)
Translates to: VRIILQRARSLDSSF*GFLMEVVLSAFDRL
Trigger: CAACCTGTCAAAAGCAGAAAGCACCACCTCCATTAAGAAACCCAAAAAAGATGAGTCCAGGGACCTGGCTCTCTGCAGTATGATCCTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp CCGACCCATTTATACCTTTCTCAGGACCATTTCGACTaGTCTTCCCAGAAGTCCTCGAATGGAATGACGAAT +
Preference number: 6 (lower is better)
Translates to: PTHLYLSQDHFD*SSQKSSNGMTN
Trigger: ATTCGTCATTCCATTCGAGGACTTCTGGGAAGAGCAGTCGAAATGGTCCTGAGAAAGGTATAAATGGGTCGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp ATAATTGATTTTTCCCATGCTATTGATCTCTGTAACTaGTGGATGCACAGGGCTACCTGCGCAGCACTGCGA +
Preference number: 6 (lower is better)
Translates to: IIDFSHAIDLCN*WMHRATCAALR
Trigger: TCGCAGTGCTGCGCAGGTAGCCCTGTGCATCCAGCAGTTACAGAGATCAATAGCATGGGAAAAATCAATTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS CAA 72 bp GAGGTGTCTGACGATGTGCCTGAGTCACTATCACTGTaGCTAGAACTTTCCATAGCCTTCTTCCTTGGTTTC +
Preference number: 6 (lower is better)
Translates to: EVSDDVPESLSL*LELSIAFFLGF
Trigger: GAAACCAAGGAAGAAGGCTATGGAAAGTTCTAGCAACAGTGATAGTGACTCAGGCACATCGTCAGACACCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 90 bp CCTTCACTCGAGGTGTCTGACGATGTGCCTGAGTCACTATCACTGTaGCTAGAACTTTCCATAGCCTTCTTCCTTGGTTTCTTATCTTTG +
Preference number: 6 (lower is better)
Translates to: PSLEVSDDVPESLSL*LELSIAFFLGFLSL
Trigger: CAAAGATAAGAAACCAAGGAAGAAGGCTATGGAAAGTTCTAGCAACAGTGATAGTGACTCAGGCACATCGTCAGACACCTCGAGTGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp AGAGGAGCCTCACAAGCAAGTCTTGTACTTCACCCATaGTGTCCCCTATATTTAGCAATCCCTCTTGAAGAA +
Preference number: 6 (lower is better)
Translates to: RGASQASLVLHP*CPLYLAIPLEE
Trigger: TTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp AATGTAATCCAAGTGTTTCTGAATTTGCTTTTGCAATaGCTTTTCCCGGATCCCGCGGAGGTGCAGCACTTT +
Preference number: 6 (lower is better)
Translates to: NVIQVFLNLLLQ*LFPDPAEVQHF
Trigger: AAAGTGCTGCACCTCCGCGGGATCCGGGAAAAGGCATTGCAAAAGCAAATTCAGAAACACTTGGATTACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS GCA 72 bp TTTTTACGAGCTTCCATAGCTTTCATAAGCATCACATaGTGCCGCCTTCGCTCCCGTTCCATATCTAGTCTA +
Preference number: 6 (lower is better)
Translates to: FLRASIAFISIT*CRLRSRSISSL
Trigger: TAGACTAGATATGGAACGGGAGCGAAGGCGGCAGCATGTGATGCTTATGAAAGCTATGGAAGCTCGTAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153136.2
CDS CAA 72 bp ATGGAACTTGAAGCAGGAGTGGCTACTACAGATGCATaGACACCAAGTACTGATGCTGCACTGGTTCCATTA +
Preference number: 6 (lower is better)
Translates to: MELEAGVATTDA*TPSTDAALVPL
Trigger: TAATGGAACCAGTGCAGCATCAGTACTTGGTGTCAATGCATCTGTAGTAGCCACTCCTGCTTCAAGTTCCAT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 72 bp TGGGCCTCCATGAAAATCTGCAAAACCTCGGACACATaGTCTCGATTCACACCAACGTTCAGCAAATGTTCT +
Preference number: 6 (lower is better)
Translates to: WASMKICKTSDT*SRFTPTFSKCS
Trigger: AGAACATTTGCTGAACGTTGGTGTGAATCGAGACAATGTGTCCGAGGTTTTGCAGATTTTCATGGAGGCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 72 bp GTCTTTCAGCTGGAGGGACTGGAGAGTCACTTTTACTaGAAGCAACACTGGAAGTCAAGAATGAACTACTGC +
Preference number: 6 (lower is better)
Translates to: VFQLEGLESHFY*KQHWKSRMNYC
Trigger: GCAGTAGTTCATTCTTGACTTCCAGTGTTGCTTCAAGTAAAAGTGACTCTCCAGTCCCTCCAGCTGAAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 72 bp CTCCACCATCCGAACTGCATTTCTTCTGGGATAGGTTaGGGACTAGGAAAATCTACTGGCTTTGCTACTTCA +
Preference number: 6 (lower is better)
Translates to: LHHPNCISSGIG*GLGKSTGFATS
Trigger: TGAAGTAGCAAAGCCAGTAGATTTTCCTAGTCCCAAACCTATCCCAGAAGAAATGCAGTTCGGATGGTGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 72 bp ATCACTGTTGCTAGAACTTTCCATAGCCTTCTTCCTTaGTTTCTTATCTTTGATTCTGTCGGCTCTGGCGTC +
Preference number: 6 (lower is better)
Translates to: ITVARTFHSLLP*FLIFDSVGSGV
Trigger: GACGCCAGAGCCGACAGAATCAAAGATAAGAAACCAAGGAAGAAGGCTATGGAAAGTTCTAGCAACAGTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CCA 72 bp GAGGGACTGGAGAGTCACTTTTACTTGAAGCAACACTaGAAGTCAAGAATGAACTACTGCCATTTCCTTCTG +
Preference number: 6 (lower is better)
Translates to: EGLESHFYLKQH*KSRMNYCHFLL
Trigger: CAGAAGGAAATGGCAGTAGTTCATTCTTGACTTCCAGTGTTGCTTCAAGTAAAAGTGACTCTCCAGTCCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 72 bp TCCTGCTGCTTTATAATCTTCATCTGTTCTTTCTGTTaGCGCTTCTCTTCCGCAGCCATTATCGCTTGCTGT +
Preference number: 6 (lower is better)
Translates to: SCCFIIFICSFC*RFSSAAIIACC
Trigger: ACAGCAAGCGATAATGGCTGCGGAAGAGAAGCGCAAACAGAAAGAACAGATGAAGATTATAAAGCAGCAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS CAA 90 bp CCAGCTCTGCCTATGTCCGAGTCATCTTCATTAAATGTTTCACAGTaGTCAAAAACAAGCCTGACGTCTAGAGCAAAGGTCTCAAAGTTG +
Preference number: 6 (lower is better)
Translates to: PALPMSESSSLNVSQ*SKTSLTSRAKVSKL
Trigger: CAACTTTGAGACCTTTGCTCTAGACGTCAGGCTTGTTTTTGACAACTGTGAAACATTTAATGAAGATGACTCGGACATAGGCAGAGCTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp TTTAGCTCCTTCGCCATTTCTAACTCCAGTCTCCGCTaGTCTAGTTTGCGTTCCTTATTCAATCTTTTCTCA +
Preference number: 6 (lower is better)
Translates to: FSSFAISNSSLR*SSLRSLFNLFS
Trigger: TGAGAAAAGATTGAATAAGGAACGCAAACTAGAGCAGCGGAGACTGGAGTTAGAAATGGCGAAGGAGCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS CCA 72 bp TCAGTTTTTCAATCTGTTTTTCTAGCTCCTCAACGCTaGCTGTTTGGTCACCTTCATCCTCATCTTCACAGA +
Preference number: 6 (lower is better)
Translates to: SVFQSVFLAPQR*LFGHLHPHLHR
Trigger: TCTGTGAAGATGAGGATGAAGGTGACCAAACAGCCAGCGTTGAGGAGCTAGAAAAACAGATTGAAAAACTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 72 bp TTCGCCATTTCTAACTCCAGTCTCCGCTGCTCTAGTTaGCGTTCCTTATTCAATCTTTTCTCATCACGTTTC +
Preference number: 6 (lower is better)
Translates to: FAISNSSLRCSS*RSLFNLFSSRF
Trigger: GAAACGTGATGAGAAAAGATTGAATAAGGAACGCAAACTAGAGCAGCGGAGACTGGAGTTAGAAATGGCGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS TCA 72 bp AAACTTTACCAAAGTTTCGTAAGAACTGCACCACCATaGGACAGTCTGAAAATGTGGTTCCAGAGAGCACAA +
Preference number: 6 (lower is better)
Translates to: KLYQSFVRTAPP*DSLKMWFQRAQ
Trigger: TTGTGCTCTCTGGAACCACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS TCA 72 bp TTATCTTTCTCTTTTGGGTCGTCTTTCTGCTCGCAGTaGTCTCTAATGGAACAGTTTAATGTCTCCGCAGAA +
Preference number: 6 (lower is better)
Translates to: LSFSFGSSFCSQ*SLMEQFNVSAE
Trigger: TTCTGCGGAGACATTAAACTGTTCCATTAGAGATCACTGCGAGCAGAAAGACGACCCAAAAGAGAAAGATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS GCA 72 bp TCAAAGCCCAAAACTTTACCAAAGTTTCGTAAGAACTaGACCACCATGAGACAGTCTGAAAATGTGGTTCCA +
Preference number: 6 (lower is better)
Translates to: SKPKTLPKFRKN*TTMRQSENVVP
Trigger: TGGAACCACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS CAA 90 bp TGCGCACTGTTTTCTTCGTCACCAGTAAGTTCTCCATCATGCTCCTaGAACAACTTAGTAAGTGACTTATGTTCAAAATATACCAAGTCC +
Preference number: 6 (lower is better)
Translates to: CALFSSSPVSSPSCS*NNLVSDLCSKYTKS
Trigger: GGACTTGGTATATTTTGAACATAAGTCACTTACTAAGTTGTTCAAGGAGCATGATGGAGAACTTACTGGTGACGAAGAAAACAGTGCGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS TCA 72 bp TGTCCCCTATATTTAGCAATCCCTCTTGAAGAACACTaGGGTTTGGAACATCAATATTCACATCAAAGCCCA +
Preference number: 6 (lower is better)
Translates to: CPLYLAIPLEEH*GLEHQYSHQSP
Trigger: TGGGCTTTGATGTGAATATTGATGTTCCAAACCTCAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000153136.2
CDS GCA 72 bp GCACTGTTTTCTTCGTCACCAGTAAGTTCTCCATCATaGTCCTTGAACAACTTAGTAAGTGACTTATGTTCA +
Preference number: 6 (lower is better)
Translates to: ALFSSSPVSSPS*SLNNLVSDLCS
Trigger: TGAACATAAGTCACTTACTAAGTTGTTCAAGGAGCATGATGGAGAACTTACTGGTGACGAAGAAAACAGTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS CAA 72 bp TTCAATAATAGCGACGTCCTTGTTCCTGACACAGGCTaGGGTAATGTAATCCAAGTGTTTCTGAATTTGCTT +
Preference number: 6 (lower is better)
Translates to: FNNSDVLVPDTG*GNVIQVFLNLL
Trigger: AAGCAAATTCAGAAACACTTGGATTACATTACCCAAGCCTGTGTCAGGAACAAGGACGTCGCTATTATTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2
CDS CAA 72 bp AAAACAAGCCTGACGTCTAGAGCAAAGGTCTCAAAGTaGGGATACTGTCCATTATTTAGTTTTTCTCTAATT +
Preference number: 6 (lower is better)
Translates to: KTSLTSRAKVSK*GYCPLFSFSLI
Trigger: AATTAGAGAAAAACTAAATAATGGACAGTATCCCAACTTTGAGACCTTTGCTCTAGACGTCAGGCTTGTTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
CDS CAA 72 bp TTTTCTTCGTCACCAGTAAGTTCTCCATCATGCTCCTaGAACAACTTAGTAAGTGACTTATGTTCAAAATAT +
Preference number: 6 (lower is better)
Translates to: FSSSPVSSPSCS*NNLVSDLCSKY
Trigger: ATATTTTGAACATAAGTCACTTACTAAGTTGTTCAAGGAGCATGATGGAGAACTTACTGGTGACGAAGAAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090925.13
ENSMUST00000112550.8
ENSMUST00000130637.2