RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BAZ2A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040054

Ensembl transcript IDs: ENSMUST00000045621.9, ENSMUST00000170054.9, ENSMUST00000217851.2, ENSMUST00000219072.2, ENSMUST00000220049.2, ENSMUST00000238829.2

Found 1065 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACAGGCAACCGGGAGTGCGGTGAGGGTGGGTCGAGGAGTCAGGGCTaGCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTA +
Preference number: 1 (lower is better)
Translates to: TGNRECGEGGSRSQG*PGTRTAPLFSTAGV
Trigger: TACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCTGACTCCTCGACCCACCCTCACCGCACTCCCGGTTGCCTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR TCA 90 bp ATCGACAGAAAAGGCGACTTTAGAAACAGGCAACCGGGAGTGCGGTaGGGGTGGGTCGAGGAGTCAGGGCTGCCCAGGAACCCGCACTGC +
Preference number: 1 (lower is better)
Translates to: IDRKGDFRNRQPGVR*GWVEESGLPRNPHC
Trigger: GCAGTGCGGGTTCCTGGGCAGCCCTGACTCCTCGACCCACCCTCACCGCACTCCCGGTTGCCTGTTTCTAAAGTCGCCTTTTCTGTCGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR GCA 90 bp GGTTCATCGACAGAAAAGGCGACTTTAGAAACAGGCAACCGGGAGTaGGGTGAGGGTGGGTCGAGGAGTCAGGGCTGCCCAGGAACCCGC +
Preference number: 1 (lower is better)
Translates to: GSSTEKATLETGNRE*GEGGSRSQGCPGTR
Trigger: GCGGGTTCCTGGGCAGCCCTGACTCCTCGACCCACCCTCACCGCACTCCCGGTTGCCTGTTTCTAAAGTCGCCTTTTCTGTCGATGAACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CCA 90 bp CATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTaGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACA +
Preference number: 1 (lower is better)
Translates to: HGSSMFRARCPARHT*ELSPLYWPSLRVRT
Trigger: TGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR GCA 90 bp GAATGCTACACCTCACCTGGCATCCTCCGCCCACCCATGGAACATTaGTTGGATGCCTTGGCTCCCTGCTTAGGTCAGCTAGCAGCCACC +
Preference number: 1 (lower is better)
Translates to: ECYTSPGILRPPMEH*LDALAPCLGQLAAT
Trigger: GGTGGCTGCTAGCTGACCTAAGCAGGGAGCCAAGGCATCCAAGCAATGTTCCATGGGTGGGCGGAGGATGCCAGGTGAGGTGTAGCATTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CCA 90 bp GCCCGGTGTCCGGCTCGACACACTTGGGAGTTAAGTCCACTTTACTaGCCGTCACTGCGGGTCCGCACACAGTACAGAGTGTTTCTCAGT +
Preference number: 1 (lower is better)
Translates to: ARCPARHTWELSPLY*PSLRVRTQYRVFLS
Trigger: ACTGAGAAACACTCTGTACTGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGTCGAGCCGGACACCGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR GCA 90 bp GAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGGAATaGTACACCTCACCTGGCATCCTCCGCCCACCCATGGAACATTGC +
Preference number: 1 (lower is better)
Translates to: EPALPHSLVLLEYKE*YTSPGILRPPMEHC
Trigger: GCAATGTTCCATGGGTGGGCGGAGGATGCCAGGTGAGGTGTAGCATTCCTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR TCA 90 bp ATGACTCCAGTACACTTTATGCCAGGGGAAACAGTTCCAAACATCTaGCTAACACAAAGTTTGTTACAGCGCAGTTATTTAGATAAAATA +
Preference number: 1 (lower is better)
Translates to: MTPVHFMPGETVPNI*LTQSLLQRSYLDKI
Trigger: TATTTTATCTAAATAACTGCGCTGTAACAAACTTTGTGTTAGTCAGATGTTTGGAACTGTTTCCCCTGGCATAAAGTGTACTGGAGTCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGATAGCCCCAGGATGCTaGGGCATGGACAGGGAGGGG +
Preference number: 2 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEIAPGC*GMDREG
Trigger: CCCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTAT...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGATAGCCCCAGGATGCTaGGGCATGGACAGGGAGGGG +
Preference number: 2 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKIAPGC*GMDREG
Trigger: CCCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTAT...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CAA 90 bp ACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTaGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCAC +
Preference number: 2 (lower is better)
Translates to: TWKQHVQGPVSGSTH*GVKSTLLAVTAGPH
Trigger: GTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCTCCAGGGTCTCTGCTaGTGGGGAAGAAAGGGGTCC +
Preference number: 2 (lower is better)
Translates to: ATSPVQVPVISDGRGLAELQGLC*WGRKGS
Trigger: GGACCCCTTTCTTCCCCAGCAGCAGAGACCCTGGAG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGCTCCAGGGTCTCTGCTaGTGGGGAAGAAAGGGGTCC +
Preference number: 2 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKLQGLC*WGRKGS
Trigger: GGACCCCTTTCTTCCCCAGCAGCAGAGACCCTGGAG...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGAGAGGATGTGGGTGCTaGCAAGGGCAGAGTCAAGAG +
Preference number: 2 (lower is better)
Translates to: EHGSSMFRARCPARHTWERGCGC*QGQSQE
Trigger: CTCTTGACTCTGCCCTTGGCAGCACCCACATCCTCT...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGCTGAGGCCAGTCAATTaGTACCTGGCCCCCATCTCG +
Preference number: 2 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKLRPVN*YLAPIS
Trigger: CGAGATGGGGGCCAGGTAGCAATTGACTGGCCTCAG...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCTGAGGCCAGTCAATTaGTACCTGGCCCCCATCTCG +
Preference number: 2 (lower is better)
Translates to: ATSPVQVPVISDGRGLAELRPVN*YLAPIS
Trigger: CGAGATGGGGGCCAGGTAGCAATTGACTGGCCTCAG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTATAGCCCCAGGATGCTaGGGCATGGACAGGGAGGGG +
Preference number: 2 (lower is better)
Translates to: LICARAHTQTQNTHPHPPIAPGC*GMDREG
Trigger: CCCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTAT...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGAGCAGTAGTTGTCCCTaGGGAGTTCCCAAGAGGGAG +
Preference number: 2 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKSSSCP*GVPKRE
Trigger: CTCCCTCTTGGGAACTCCTCAGGGACAACTACTGCT...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCTCTCCTCCTCTCTCTaGGGCCAGTCAATTGCTACC +
Preference number: 2 (lower is better)
Translates to: ATSPVQVPVISDGRGLAELSSSL*GQSIAT
Trigger: GGTAGCAATTGACTGGCCTCAGAGAGAGGAGGAGAG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGAGAGGATGTGGGTGCTaGCAAGGGCAGAGTCAAGAG +
Preference number: 2 (lower is better)
Translates to: ATSPVQVPVISDGRGLAERGCGC*QGQSQE
Trigger: CTCTTGACTCTGCCCTTGGCAGCACCCACATCCTCT...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGTCTGCATCTCTTATTTaGGGAGCCAGAGGAGGAAGG +
Preference number: 2 (lower is better)
Translates to: EHGSSMFRARCPARHTWESASLI*GARGGR
Trigger: CCTTCCTCCTCTGGCTCCTCAAATAAGAGATGCAGA...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCTCCAGGGTCTCTGCTaGTGGGGAAGAAAGGGGTCC +
Preference number: 2 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCLQGLC*WGRKGS
Trigger: GGACCCCTTTCTTCCCCAGCAGCAGAGACCCTGGAG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGGTGCTCCAGGGTCTCTaGTGCTGGGGAAGAAAGGGG +
Preference number: 2 (lower is better)
Translates to: LGQLAATSPVQVPVISDGVLQGL*CWGRKG
Trigger: CCCCTTTCTTCCCCAGCAGCAGAGACCCTGGAGCAC...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGCCATGGAACATTGCTTaGATGCCTTGGCTCCCTGCT +
Preference number: 2 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKPWNIA*MPWLPA
Trigger: AGCAGGGAGCCAAGGCATCCAAGCAATGTTCCATGG...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGTCTGCATCTCTTATTTaGGGAGCCAGAGGAGGAAGG +
Preference number: 2 (lower is better)
Translates to: ATSPVQVPVISDGRGLAESASLI*GARGGR
Trigger: CCTTCCTCCTCTGGCTCCTCAAATAAGAGATGCAGA...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCAGAAACTCAGCATGTaGGGAGGAGCCAACACCTTA +
Preference number: 2 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEQKLSM*GGANTL
Trigger: TAAGGTGTTGGCTCCTCCTCACATGCTGAGTTTCTG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGCTGAGGCCAGTCAATTaGTACCTGGCCCCCATCTCG +
Preference number: 2 (lower is better)
Translates to: LGQLAATSPVQVPVISDGLRPVN*YLAPIS
Trigger: CGAGATGGGGGCCAGGTAGCAATTGACTGGCCTCAG...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCGAGGAGTCAGGGCTaGCCAGGAACCCGCACTGCC +
Preference number: 2 (lower is better)
Translates to: PFDHILPTIPSVPISTIKSRSQG*PGTRTA
Trigger: GGCAGTGCGGGTTCCTGGGCAGCCCTGACTCCTCGA...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCCGGCTCGACACACTTaGGAGTTAAGTCCACTTTAC +
Preference number: 2 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEPARHT*ELSPLY
Trigger: GTAAAGTGGACTTAACTCCCAAGTGTGTCGAGCCGG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGCAGCCATCAGCAGGTaGGAACGGCAGGTTTTTGTT +
Preference number: 2 (lower is better)
Translates to: CPLPSHRASEKARDSQKLAAISR*ERQVFV
Trigger: AACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGAGTCAGCATTGTCTaGCTTGAGTCCACCCAGGGC +
Preference number: 2 (lower is better)
Translates to: LGQLAATSPVQVPVISDGRVSIV*LESTQG
Trigger: GCCCTGGGTGGACTCAAGTCAGACAATGCTGACTCT...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCAGAGTCAGCATTGTCTaGCTTGAGTCCACCCAGGGC +
Preference number: 2 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLRVSIV*LESTQG
Trigger: GCCCTGGGTGGACTCAAGTCAGACAATGCTGACTCT...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGATAGCCCCAGGATGCTaGGGCATGGACAGGGAGGGG +
Preference number: 2 (lower is better)
Translates to: PFDHILPTIPSVPISTIKIAPGC*GMDREG
Trigger: CCCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTAT...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCAGCAGTAGTTGTCCCTaGGGAGTTCCCAAGAGGGAG +
Preference number: 2 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLSSSCP*GVPKRE
Trigger: CTCCCTCTTGGGAACTCCTCAGGGACAACTACTGCT...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTCTCTCCTCCTCTCTCTaGGGCCAGTCAATTGCTACC +
Preference number: 2 (lower is better)
Translates to: LICARAHTQTQNTHPHPPLSSSL*GQSIAT
Trigger: GGTAGCAATTGACTGGCCTCAGAGAGAGGAGGAGAG...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTTTTACTGGCCGTCACTaGGGGTCCGCACACAGTACA +
Preference number: 2 (lower is better)
Translates to: LICARAHTQTQNTHPHPPFTGRH*GSAHST
Trigger: TGTACTGTGTGCGGACCCGCAGTGACGGCCAGTAAA...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGTCTCTGCCCATTCTGTaGTCCAGGGTCTCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: LGQLAATSPVQVPVISDGSLPIL*SRVSAA
Trigger: AGCAGCAGAGACCCTGGAGCACAGAATGGGCAGAGA...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCCTCCTCCTTCTGAGTaGCTGGTCCCGAGGGCAGAG +
Preference number: 2 (lower is better)
Translates to: PFDHILPTIPSVPISTIKPPPSE*LVPRAE
Trigger: CTCTGCCCTCGGGACCAGGCACTCAGAAGGAGGAGG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGTTAAGTCCACTTTACTaGCCGTCACTGCGGGTCCGC +
Preference number: 2 (lower is better)
Translates to: LGQLAATSPVQVPVISDGLSPLY*PSLRVR
Trigger: GCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAA...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCTTAAGTCCACTTTACTaGCCGTCACTGCGGGTCCGC +
Preference number: 2 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLLSPLY*PSLRVR
Trigger: GCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAA...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGGAAAGCAGGGGCCAGTaGCCCATGGCTACAGCTTGG +
Preference number: 2 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLESRGQ*PMATAW
Trigger: CCAAGCTGTAGCCATGGGCCACTGGCCCCTGCTTTC...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCGCAGCCATCAGCAGGTaGGAACGGCAGGTTTTTGTT +
Preference number: 2 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLAAISR*ERQVFV
Trigger: AACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGC...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTGCAGCCATCAGCAGGTaGGAACGGCAGGTTTTTGTT +
Preference number: 2 (lower is better)
Translates to: LICARAHTQTQNTHPHPPAAISR*ERQVFV
Trigger: AACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGC...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGCAGCATTGTCTGACTTaGGTCCACCCAGGGCAGCCA +
Preference number: 2 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGQHCLT*VHPGQP
Trigger: TGGCTGCCCTGGGTGGACTCAAGTCAGACAATGCTG...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTAAGCAGGGAGGGGACTaGACATGGAAGCAGCATGTT +
Preference number: 2 (lower is better)
Translates to: LICARAHTQTQNTHPHPPKQGGD*TWKQHV
Trigger: AACATGCTGCTTCCATGTTCAGTCCCCTCCCTGCTT...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTAAGCAGGGAGGGGACTaGACATGGAAGCAGCATGTT +
Preference number: 2 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCKQGGD*TWKQHV
Trigger: AACATGCTGCTTCCATGTTCAGTCCCCTCCCTGCTT...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGGGAGTTAGAACAGAATaGGTGAGAGGAAGTGAGAAG +
Preference number: 2 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEGVRTE*VRGSEK
Trigger: CTTCTCACTTCCTCTCACTCATTCTGTTCTAACTCC...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGGTGCTCCAGGGTCTCTaGTGCTGGGGAAGAAAGGGG +
Preference number: 2 (lower is better)
Translates to: PFDHILPTIPSVPISTIKVLQGL*CWGRKG
Trigger: CCCCTTTCTTCCCCAGCAGCAGAGACCCTGGAGCAC...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGGATGGTGTGAAACAATaGGAAGGCGGGAATAAACAC +
Preference number: 2 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKDGVKQ*EGGNKH
Trigger: GTGTTTATTCCCGCCTTCCCATTGTTTCACACCATC...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTGCTGGGGGCTAACCTaGGCTCAGTCACACACAGGG +
Preference number: 2 (lower is better)
Translates to: PFDHILPTIPSVPISTIKCWGLT*AQSHTG
Trigger: CCCTGTGTGTGACTGAGCCCAGGTTAGCCCCCAGCA...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGGAAAGCAGGGGCCAGTaGCCCATGGCTACAGCTTGG +
Preference number: 2 (lower is better)
Translates to: PFDHILPTIPSVPISTIKESRGQ*PMATAW
Trigger: CCAAGCTGTAGCCATGGGCCACTGGCCCCTGCTTTC...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGAGAGTCAGCATTGTCTaGCTTGAGTCCACCCAGGGC +
Preference number: 2 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLRVSIV*LESTQG
Trigger: GCCCTGGGTGGACTCAAGTCAGACAATGCTGACTCT...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAATAGCCCCAGGATGCTaGGGCATGGACAGGGAGGGG +
Preference number: 2 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFEIAPGC*GMDREG
Trigger: CCCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTAT...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGCAGAAACTCAGCATGTaGGGAGGAGCCAACACCTTA +
Preference number: 2 (lower is better)
Translates to: LGQLAATSPVQVPVISDGQKLSM*GGANTL
Trigger: TAAGGTGTTGGCTCCTCCTCACATGCTGAGTTTCTG...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGCTCTCCTCCTCTCTCTaGGGCCAGTCAATTGCTACC +
Preference number: 2 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLLSSSL*GQSIAT
Trigger: GGTAGCAATTGACTGGCCTCAGAGAGAGGAGGAGAG...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCGTGCTCCAGGGTCTCTaGTGCTGGGGAAGAAAGGGG +
Preference number: 2 (lower is better)
Translates to: DEERKVRNGPFDHILPTIVLQGL*CWGRKG
Trigger: CCCCTTTCTTCCCCAGCAGCAGAGACCCTGGAGCAC...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGTCTCTGCCCATTCTGTaGTCCAGGGTCTCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLSLPIL*SRVSAA
Trigger: AGCAGCAGAGACCCTGGAGCACAGAATGGGCAGAGA...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGAAGCAGGGAGGGGACTaGACATGGAAGCAGCATGTT +
Preference number: 2 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLKQGGD*TWKQHV
Trigger: AACATGCTGCTTCCATGTTCAGTCCCCTCCCTGCTT...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTTTACTGGCCGTCACTaGGGGTCCGCACACAGTACA +
Preference number: 2 (lower is better)
Translates to: PFDHILPTIPSVPISTIKFTGRH*GSAHST
Trigger: TGTACTGTGTGCGGACCCGCAGTGACGGCCAGTAAA...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCCTCCGCCCACCCATaGAACATTGCTTGGATGCCT +
Preference number: 2 (lower is better)
Translates to: PFDHILPTIPSVPISTIKSSAHP*NIAWMP
Trigger: AGGCATCCAAGCAATGTTCCATGGGTGGGCGGAGGA...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CAA 90 bp TTTGCTGTAAAAGGAACGTGGAAACTTGTTGGTGTTGATGGTTTCTaGCTGTCACCAGGAAGGGGACACAAAGGGCAGGGAAGGGCTGTC +
Preference number: 2 (lower is better)
Translates to: FAVKGTWKLVGVDGF*LSPGRGHKGQGRAV
Trigger: GACAGCCCTTCCCTGCCCTTTGTGTCCCCTTCCTGGTGACAGCAAGAAACCATCAACACCAACAAGTTTCCACGTTCCTTTTACAGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGTCTGCATCTCTTATTTaGGGAGCCAGAGGAGGAAGG +
Preference number: 2 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLSASLI*GARGGR
Trigger: CCTTCCTCCTCTGGCTCCTCAAATAAGAGATGCAGA...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCGAAGGACCTCATCTCTaGATCTCTTATTTGAGGAGC +
Preference number: 2 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLEGPHL*ISYLRS
Trigger: GCTCCTCAAATAAGAGATGCAGAGATGAGGTCCTTC...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATTTTACTGGCCGTCACTaGGGGTCCGCACACAGTACA +
Preference number: 2 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNFTGRH*GSAHST
Trigger: TGTACTGTGTGCGGACCCGCAGTGACGGCCAGTAAA...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCTCTCTGCCCATTCTGTaGTCCAGGGTCTCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: DEERKVRNGPFDHILPTISLPIL*SRVSAA
Trigger: AGCAGCAGAGACCCTGGAGCACAGAATGGGCAGAGA...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCTTAAGTCCACTTTACTaGCCGTCACTGCGGGTCCGC +
Preference number: 2 (lower is better)
Translates to: DEERKVRNGPFDHILPTILSPLY*PSLRVR
Trigger: GCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAA...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCGGGAATAAACACATGTaGGGAACAATGAGTCCCATC +
Preference number: 2 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLGNKHM*GTMSPI
Trigger: GATGGGACTCATTGTTCCCCACATGTGTTTATTCCC...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGAGAGTCAGCATTGTCTaGCTTGAGTCCACCCAGGGC +
Preference number: 2 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMRVSIV*LESTQG
Trigger: GCCCTGGGTGGACTCAAGTCAGACAATGCTGACTCT...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAAGAGTCAGCATTGTCTaGCTTGAGTCCACCCAGGGC +
Preference number: 2 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFERVSIV*LESTQG
Trigger: GCCCTGGGTGGACTCAAGTCAGACAATGCTGACTCT...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCAGAAACTCAGCATGTaGGGAGGAGCCAACACCTTA +
Preference number: 2 (lower is better)
Translates to: PFDHILPTIPSVPISTIKQKLSM*GGANTL
Trigger: TAAGGTGTTGGCTCCTCCTCACATGCTGAGTTTCTG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGAGAGGATGTGGGTGCTaGCAAGGGCAGAGTCAAGAG +
Preference number: 2 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMRGCGC*QGQSQE
Trigger: CTCTTGACTCTGCCCTTGGCAGCACCCACATCCTCT...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAAGAGGATGTGGGTGCTaGCAAGGGCAGAGTCAAGAG +
Preference number: 2 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFERGCGC*QGQSQE
Trigger: CTCTTGACTCTGCCCTTGGCAGCACCCACATCCTCT...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGTTTACTGGCCGTCACTaGGGGTCCGCACACAGTACA +
Preference number: 2 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMFTGRH*GSAHST
Trigger: TGTACTGTGTGCGGACCCGCAGTGACGGCCAGTAAA...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCGGAACATTGCTTGGATaGCTTGGCTCCCTGCTTAGG +
Preference number: 2 (lower is better)
Translates to: DEERKVRNGPFDHILPTIGTLLG*LGSLLR
Trigger: CCTAAGCAGGGAGCCAAGGCATCCAAGCAATGTTCC...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCTGGAGTACAAGGAATaGTACACCTCACCTGGCATC +
Preference number: 2 (lower is better)
Translates to: PFDHILPTIPSVPISTIKLEYKE*YTSPGI
Trigger: GATGCCAGGTGAGGTGTAGCATTCCTTGTACTCCAG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGTTAAGTCCACTTTACTaGCCGTCACTGCGGGTCCGC +
Preference number: 2 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMLSPLY*PSLRVR
Trigger: GCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAA...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATTCTGCATCTCTTATTTaGGGAGCCAGAGGAGGAAGG +
Preference number: 2 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNSASLI*GARGGR
Trigger: CCTTCCTCCTCTGGCTCCTCAAATAAGAGATGCAGA...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp ACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACAATGGCTGAGGCCAGTCAATTaGTACCTGGCCCCCATCTCG +
Preference number: 2 (lower is better)
Translates to: TLVLVFSQRQKVDGVKQWLRPVN*YLAPIS
Trigger: CGAGATGGGGGCCAGGTAGCAATTGACTGGCCTCAG...CCATTGTTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp ACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACAATGGAGCAGTAGTTGTCCCTaGGGAGTTCCCAAGAGGGAG +
Preference number: 2 (lower is better)
Translates to: TLVLVFSQRQKVDGVKQWSSSCP*GVPKRE
Trigger: CTCCCTCTTGGGAACTCCTCAGGGACAACTACTGCT...CCATTGTTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CAGAGAACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACTCTCCTCCTCTCTCTaGGGCCAGTCAATTGCTACC +
Preference number: 2 (lower is better)
Translates to: QRTLVLVFSQRQKVDGVKLSSSL*GQSIAT
Trigger: GGTAGCAATTGACTGGCCTCAGAGAGAGGAGGAGAG...TTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGTTCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTAAAGATTGCACAGTTTaGAGAGGCTGGAAAAGAAAT +
Preference number: 2 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCKDCTV*RGWKRN
Trigger: ATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTT...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR GCA 90 bp CAGAGAACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAATTTACTGGCCGTCACTaGGGGTCCGCACACAGTACA +
Preference number: 2 (lower is better)
Translates to: QRTLVLVFSQRQKVDGVKFTGRH*GSAHST
Trigger: TGTACTGTGTGCGGACCCGCAGTGACGGCCAGTAAA...TTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGTTCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp ACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACAATGGTTAAGTCCACTTTACTaGCCGTCACTGCGGGTCCGC +
Preference number: 2 (lower is better)
Translates to: TLVLVFSQRQKVDGVKQWLSPLY*PSLRVR
Trigger: GCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAA...CCATTGTTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CAA 90 bp TACAGAGTGTTTCTCAGTTTCACACATTCACTAGAACTATTGCTATaGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGGAG +
Preference number: 2 (lower is better)
Translates to: YRVFLSFTHSLELLL*LNSPRMLRHGQGGE
Trigger: CTCCCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTCTAGTGAATGTGTGAAACTGAGAAACACTCTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CAGAGAACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAAGCAGCCATCAGCAGGTaGGAACGGCAGGTTTTTGTT +
Preference number: 2 (lower is better)
Translates to: QRTLVLVFSQRQKVDGVKAAISR*ERQVFV
Trigger: AACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGC...TTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGTTCTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATGGAGTTAGAACAGAATaGGTGAGAGGAAGTGAGAAG +
Preference number: 2 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNGVRTE*VRGSEK
Trigger: CTTCTCACTTCCTCTCACTCATTCTGTTCTAACTCC...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGGGAGTTAGAACAGAATaGGTGAGAGGAAGTGAGAAG +
Preference number: 2 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMGVRTE*VRGSEK
Trigger: CTTCTCACTTCCTCTCACTCATTCTGTTCTAACTCC...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp ACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACAATGGCCGGCTCGACACACTTaGGAGTTAAGTCCACTTTAC +
Preference number: 2 (lower is better)
Translates to: TLVLVFSQRQKVDGVKQWPARHT*ELSPLY
Trigger: GTAAAGTGGACTTAACTCCCAAGTGTGTCGAGCCGG...CCATTGTTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CAA 90 bp ACACAGTACAGAGTGTTTCTCAGTTTCACACATTCACTAGAACTATaGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGA +
Preference number: 2 (lower is better)
Translates to: TQYRVFLSFTHSLEL*LLLNSPRMLRHGQG
Trigger: TCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTCTAGTGAATGTGTGAAACTGAGAAACACTCTGTACTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGAAAGATTGCACAGTTTaGAGAGGCTGGAAAAGAAAT +
Preference number: 2 (lower is better)
Translates to: PFDHILPTIPSVPISTIKKDCTV*RGWKRN
Trigger: ATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTT...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR TCA 90 bp CAGAGAACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAAGGAGTTAGAACAGAATaGGTGAGAGGAAGTGAGAAG +
Preference number: 2 (lower is better)
Translates to: QRTLVLVFSQRQKVDGVKGVRTE*VRGSEK
Trigger: CTTCTCACTTCCTCTCACTCATTCTGTTCTAACTCC...TTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGTTCTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp ACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACAATGGGGGAATAAACACATGTaGGGAACAATGAGTCCCATC +
Preference number: 2 (lower is better)
Translates to: TLVLVFSQRQKVDGVKQWGNKHM*GTMSPI
Trigger: GATGGGACTCATTGTTCCCCACATGTGTTTATTCCC...CCATTGTTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CCA 90 bp CAGAGAACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAAGGGAATAAACACATGTaGGGAACAATGAGTCCCATC +
Preference number: 2 (lower is better)
Translates to: QRTLVLVFSQRQKVDGVKGNKHM*GTMSPI
Trigger: GATGGGACTCATTGTTCCCCACATGTGTTTATTCCC...TTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGTTCTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR GCA 72 bp GGAAGCAGGGGAAGGAGGCTGGAAGGCCTAGGGCACTaGCTGCCTGTCCGCTCCCCAGCCACCGAGCTTCAG +
Preference number: 3 (lower is better)
Translates to: GSRGRRLEGLGH*LPVRSPATELQ
Trigger: CTGAAGCTCGGTGGCTGGGGAGCGGACAGGCAGGCAGTGCCCTAGGCCTTCCAGCCTCCTTCCCCTGCTTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR TCA 72 bp CCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTaGGTGCCTGGTCCCGAGGGCAGAGGTGGGGCTGGG +
Preference number: 3 (lower is better)
Translates to: PISTIKSGTSSF*VPGPEGRGGAG
Trigger: CCCAGCCCCACCTCTGCCCTCGGGACCAGGCACTCAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGTCAGCATTGTCTGACTaGAGTCCACCCAGGGCAGCC +
Preference number: 3 (lower is better)
Translates to: EHGSSMFRARCPARHTWESALSD*SPPRAA
Trigger: GGCTGCCCTGGGTGGACTCAAGTCAGACAATGCTGA...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR GCA 72 bp TGGCATCCTCCGCCCACCCATGGAACATTGCTTGGATaGCTTGGCTCCCTGCTTAGGTCAGCTAGCAGCCAC +
Preference number: 3 (lower is better)
Translates to: WHPPPTHGTLLG*LGSLLRSASSH
Trigger: GTGGCTGCTAGCTGACCTAAGCAGGGAGCCAAGGCATCCAAGCAATGTTCCATGGGTGGGCGGAGGATGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR GCA 72 bp ACAGAAAAGGCGACTTTAGAAACAGGCAACCGGGAGTaGGGTGAGGGTGGGTCGAGGAGTCAGGGCTGCCCA +
Preference number: 3 (lower is better)
Translates to: TEKATLETGNRE*GEGGSRSQGCP
Trigger: TGGGCAGCCCTGACTCCTCGACCCACCCTCACCGCACTCCCGGTTGCCTGTTTCTAAAGTCGCCTTTTCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CCA 72 bp AGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTaGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGG +
Preference number: 3 (lower is better)
Translates to: SMFRARCPARHT*ELSPLYWPSLR
Trigger: CCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CCA 72 bp GGCTACAGCTTGGAGTTAGCAGCTGTCCTCTCATGCTaGGGGCTAACCTGGGCTCAGTCACACACAGGGCAG +
Preference number: 3 (lower is better)
Translates to: GYSLELAAVLSC*GLTWAQSHTGQ
Trigger: CTGCCCTGTGTGTGACTGAGCCCAGGTTAGCCCCCAGCATGAGAGGACAGCTGCTAACTCCAAGCTGTAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGTCTGAGGCCAGTCAATaGCTACCTGGCCCCCATCTC +
Preference number: 3 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKSEASQ*LPGPHL
Trigger: GAGATGGGGGCCAGGTAGCAATTGACTGGCCTCAGA...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR GCA 72 bp CACCTCTCTCTCCTCCTCTCTCTGAGGCCAGTCAATTaGTACCTGGCCCCCATCTCGGAGGAGCACTCAAAC +
Preference number: 3 (lower is better)
Translates to: HLSLLLSLRPVN*YLAPISEEHSN
Trigger: GTTTGAGTGCTCCTCCGAGATGGGGGCCAGGTAGCAATTGACTGGCCTCAGAGAGAGGAGGAGAGAGAGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR GCA 72 bp CATGGCTACAGCTTGGAGTTAGCAGCTGTCCTCTCATaGTGGGGGCTAACCTGGGCTCAGTCACACACAGGG +
Preference number: 3 (lower is better)
Translates to: HGYSLELAAVLS*WGLTWAQSHTG
Trigger: CCCTGTGTGTGACTGAGCCCAGGTTAGCCCCCAGCATGAGAGGACAGCTGCTAACTCCAAGCTGTAGCCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR GCA 72 bp ACCTCACCTGGCATCCTCCGCCCACCCATGGAACATTaGTTGGATGCCTTGGCTCCCTGCTTAGGTCAGCTA +
Preference number: 3 (lower is better)
Translates to: TSPGILRPPMEH*LDALAPCLGQL
Trigger: TAGCTGACCTAAGCAGGGAGCCAAGGCATCCAAGCAATGTTCCATGGGTGGGCGGAGGATGCCAGGTGAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CCA 72 bp CCGGCTCGACACACTTGGGAGTTAAGTCCACTTTACTaGCCGTCACTGCGGGTCCGCACACAGTACAGAGTG +
Preference number: 3 (lower is better)
Translates to: PARHTWELSPLY*PSLRVRTQYRV
Trigger: CACTCTGTACTGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGTCGAGCCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGTCCGGCTCGACACACTaGGGAGTTAAGTCCACTTTA +
Preference number: 3 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKSGSTH*GVKSTL
Trigger: TAAAGTGGACTTAACTCCCAAGTGTGTCGAGCCGGA...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGTCTGAGGCCAGTCAATaGCTACCTGGCCCCCATCTC +
Preference number: 3 (lower is better)
Translates to: LGQLAATSPVQVPVISDGSEASQ*LPGPHL
Trigger: GAGATGGGGGCCAGGTAGCAATTGACTGGCCTCAGA...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGGCCCATGGCTACAGCTaGGAGTTAGCAGCTGTCCTC +
Preference number: 3 (lower is better)
Translates to: LGQLAATSPVQVPVISDGAHGYS*ELAAVL
Trigger: GAGGACAGCTGCTAACTCCAAGCTGTAGCCATGGGC...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCGCCCATGGCTACAGCTaGGAGTTAGCAGCTGTCCTC +
Preference number: 3 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLAHGYS*ELAAVL
Trigger: GAGGACAGCTGCTAACTCCAAGCTGTAGCCATGGGC...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR TCA 72 bp CTCCACTCTCCCTCCTCCCGCACCTCCAGTAGCGAATaGCTCCAGTACACTTTATGCCAGGGGAAACAGTTC +
Preference number: 3 (lower is better)
Translates to: LHSPSSRTSSSE*LQYTLCQGKQF
Trigger: GAACTGTTTCCCCTGGCATAAAGTGTACTGGAGTCATTCGCTACTGGAGGTGCGGGAGGAGGGAGAGTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGGTCCCCAGAGAACCCTaGTTCTTGTGTTTTCCCAAA +
Preference number: 3 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEVPREP*FLCFPK
Trigger: TTTGGGAAAACACAAGAACAAGGGTTCTCTGGGGAC...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CCA 72 bp AGTACTGCTGGAGTACAAGGAATGCTACACCTCACCTaGCATCCTCCGCCCACCCATGGAACATTGCTTGGA +
Preference number: 3 (lower is better)
Translates to: STAGVQGMLHLT*HPPPTHGTLLG
Trigger: TCCAAGCAATGTTCCATGGGTGGGCGGAGGATGCCAGGTGAGGTGTAGCATTCCTTGTACTCCAGCAGTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGGGAAGGAGGACTTCTTaGTCTCTCTCCATTTTAATG +
Preference number: 3 (lower is better)
Translates to: EHGSSMFRARCPARHTWEGRRTS*SLSILM
Trigger: CATTAAAATGGAGAGAGACAAAGAAGTCCTCCTTCC...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CCA 72 bp GAGGAAGGGAGAAAAGGGATTCGGAACAAGAGGATGTaGGTGCTGCCAAGGGCAGAGTCAAGAGTCAGCATT +
Preference number: 3 (lower is better)
Translates to: EEGRKGIRNKRM*VLPRAESRVSI
Trigger: AATGCTGACTCTTGACTCTGCCCTTGGCAGCACCCACATCCTCTTGTTCCGAATCCCTTTTCTCCCTTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTTCCGGCTCGACACACTaGGGAGTTAAGTCCACTTTA +
Preference number: 3 (lower is better)
Translates to: LICARAHTQTQNTHPHPPSGSTH*GVKSTL
Trigger: TAAAGTGGACTTAACTCCCAAGTGTGTCGAGCCGGA...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGTTTTTGTTTGGAAGGTaGGAGAAGATGCCACAAAGT +
Preference number: 3 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKFLFGR*EKMPQS
Trigger: ACTTTGTGGCATCTTCTCCAACCTTCCAAACAAAAA...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGCTAGAACTATTGCTATaGTTAAATAGCCCCAGGATG +
Preference number: 3 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKLELLL*LNSPRM
Trigger: CATCCTGGGGCTATTTAACAATAGCAATAGTTCTAG...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCTAGAACTATTGCTATaGTTAAATAGCCCCAGGATG +
Preference number: 3 (lower is better)
Translates to: ATSPVQVPVISDGRGLAELELLL*LNSPRM
Trigger: CATCCTGGGGCTATTTAACAATAGCAATAGTTCTAG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACAGGAAGGAGGACTTCTTaGTCTCTCTCCATTTTAATG +
Preference number: 3 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTGRRTS*SLSILM
Trigger: CATTAAAATGGAGAGAGACAAAGAAGTCCTCCTTCC...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCATTCACTAGAACTATaGCTATTGTTAAATAGCCCC +
Preference number: 3 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEHSLEL*LLLNSP
Trigger: GGGGCTATTTAACAATAGCAATAGTTCTAGTGAATG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CCA 72 bp GGTGTGAAACAATGGGAAGGCGGGAATAAACACATGTaGGGAACAATGAGTCCCATCACACTACAGGGTCAC +
Preference number: 3 (lower is better)
Translates to: GVKQWEGGNKHM*GTMSPITLQGH
Trigger: GTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCCGCCTTCCCATTGTTTCACACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCGGAAGGAGGACTTCTTaGTCTCTCTCCATTTTAATG +
Preference number: 3 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLGRRTS*SLSILM
Trigger: CATTAAAATGGAGAGAGACAAAGAAGTCCTCCTTCC...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR GCA 72 bp ATCACACTACAGGGTCACAATCACAACTCTCATCTGTaGACGTGCACACACACAGACACAAAACACACACCC +
Preference number: 3 (lower is better)
Translates to: ITLQGHNHNSHL*TCTHTDTKHTP
Trigger: GGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAGAGTTGTGATTGTGACCCTGTAGTGTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTTTTTTGTTTGGAAGGTaGGAGAAGATGCCACAAAGT +
Preference number: 3 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCFLFGR*EKMPQS
Trigger: ACTTTGTGGCATCTTCTCCAACCTTCCAAACAAAAA...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp CAGAGAACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAATCTGAGGCCAGTCAATaGCTACCTGGCCCCCATCTC +
Preference number: 3 (lower is better)
Translates to: QRTLVLVFSQRQKVDGVKSEASQ*LPGPHL
Trigger: GAGATGGGGGCCAGGTAGCAATTGACTGGCCTCAGA...TTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGTTCTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGCATTCACTAGAACTATaGCTATTGTTAAATAGCCCC +
Preference number: 3 (lower is better)
Translates to: LGQLAATSPVQVPVISDGHSLEL*LLLNSP
Trigger: GGGGCTATTTAACAATAGCAATAGTTCTAGTGAATG...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTCATTCACTAGAACTATaGCTATTGTTAAATAGCCCC +
Preference number: 3 (lower is better)
Translates to: LICARAHTQTQNTHPHPPHSLEL*LLLNSP
Trigger: GGGGCTATTTAACAATAGCAATAGTTCTAGTGAATG...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGTCCGGCTCGACACACTaGGGAGTTAAGTCCACTTTA +
Preference number: 3 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMSGSTH*GVKSTL
Trigger: TAAAGTGGACTTAACTCCCAAGTGTGTCGAGCCGGA...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTAAAAGATTGCACAGTTaGAAGAGGCTGGAAAAGAAA +
Preference number: 3 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCKRLHS*KRLEKK
Trigger: TTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTT...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTTCCTGCTGAAAAGATaGCACAGTTTGAAGAGGCTG +
Preference number: 3 (lower is better)
Translates to: PFDHILPTIPSVPISTIKFLLKR*HSLKRL
Trigger: CAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAA...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR TCA 72 bp AATGGGAAGGCGGGAATAAACACATGTGGGGAACAATaGGTCCCATCACACTACAGGGTCACAATCACAACT +
Preference number: 3 (lower is better)
Translates to: NGKAGINTCGEQ*VPSHYRVTITT
Trigger: AGTTGTGATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCCGCCTTCCCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGTTTTTGTTTGGAAGGTaGGAGAAGATGCCACAAAGT +
Preference number: 3 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGFLFGR*EKMPQS
Trigger: ACTTTGTGGCATCTTCTCCAACCTTCCAAACAAAAA...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGTCCCCAGAGAACCCTaGTTCTTGTGTTTTCCCAAA +
Preference number: 3 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFEVPREP*FLCFPK
Trigger: TTTGGGAAAACACAAGAACAAGGGTTCTCTGGGGAC...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCTTCCTGCTGAAAAGATaGCACAGTTTGAAGAGGCTG +
Preference number: 3 (lower is better)
Translates to: DEERKVRNGPFDHILPTIFLLKR*HSLKRL
Trigger: CAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAA...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCTAGAACTATTGCTATaGTTAAATAGCCCCAGGATG +
Preference number: 3 (lower is better)
Translates to: PFDHILPTIPSVPISTIKLELLL*LNSPRM
Trigger: CATCCTGGGGCTATTTAACAATAGCAATAGTTCTAG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGAGAGAACCCTTGTTCTaGTGTTTTCCCAAAGACAAA +
Preference number: 3 (lower is better)
Translates to: PFDHILPTIPSVPISTIKREPLF*CFPKDK
Trigger: TTTGTCTTTGGGAAAACACAAGAACAAGGGTTCTCT...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATTTTTTGTTTGGAAGGTaGGAGAAGATGCCACAAAGT +
Preference number: 3 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNFLFGR*EKMPQS
Trigger: ACTTTGTGGCATCTTCTCCAACCTTCCAAACAAAAA...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGGAAGGAGGACTTCTTaGTCTCTCTCCATTTTAATG +
Preference number: 3 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFEGRRTS*SLSILM
Trigger: CATTAAAATGGAGAGAGACAAAGAAGTCCTCCTTCC...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCAAAAGATTGCACAGTTaGAAGAGGCTGGAAAAGAAA +
Preference number: 3 (lower is better)
Translates to: DEERKVRNGPFDHILPTIKRLHS*KRLEKK
Trigger: TTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTT...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR-3UTR CAA 90 bp CAGAGAACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACATTCACTAGAACTATaGCTATTGTTAAATAGCCCC +
Preference number: 3 (lower is better)
Translates to: QRTLVLVFSQRQKVDGVKHSLEL*LLLNSP
Trigger: GGGGCTATTTAACAATAGCAATAGTTCTAGTGAATG...TTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGTTCTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR TCA 72 bp GTACACTTTATGCCAGGGGAAACAGTTCCAAACATCTaGCTAACACAAAGTTTGTTACAGCGCAGTTATTTA +
Preference number: 3 (lower is better)
Translates to: VHFMPGETVPNI*LTQSLLQRSYL
Trigger: TAAATAACTGCGCTGTAACAAACTTTGTGTTAGTCAGATGTTTGGAACTGTTTCCCCTGGCATAAAGTGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGTCTCCCCCTCCGCTTTaGTTGCCCCAGCCCAGTGGG +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWESPPPL*LPQPSG
Trigger: CCCACTGGGCTGGGGCAACCAAAGCGGAGGGGGAGA...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGGGCTGGCAGAGCAGGTaGGGAAGCTGGAGAGACTGC +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEGWQSR*GSWRDC
Trigger: GCAGTCTCTCCAGCTTCCTCACCTGCTCTGCCAGCC...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGGCGCCTTCTCCCGGATaGCTCGGGGATGCAGTGCCT +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKAPSPG*LGDAVP
Trigger: AGGCACTGCATCCCCGAGGCATCCGGGAGAAGGCGC...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGAGAGGGTTTCAGTCCTaGGGCAGCTGGTGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWERGFQS*GSWCRR
Trigger: CCTCCTGCACCAGCTGCCTCAGGACTGAAACCCTCT...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGGGCTGGCAGAGCAGGTaGGGAAGCTGGAGAGACTGC +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKGWQSR*GSWRDC
Trigger: GCAGTCTCTCCAGCTTCCTCACCTGCTCTGCCAGCC...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGGTCCGGCGTGAGGACTaGGCTGCTCAACAGGGAGTT +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEVRRED*AAQQGV
Trigger: AACTCCCTGTTGAGCAGCTCAGTCCTCACGCCGGAC...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGGACCAGGGCAGGACTaGGCCTCATCAGGCTCGGGC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLGPGQD*ASSGSG
Trigger: GCCCGAGCCTGATGAGGCTCAGTCCTGCCCTGGTCC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGGCCTCGGGGATGCAGTaGCTTGAGCAGGACATCCAG +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEASGMQ*LEQDIQ
Trigger: CTGGATGTCCTGCTCAAGGCACTGCATCCCCGAGGC...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGGAGAGGACAACCCGCTaGTCCAGCTCCTCCACCCAC +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEERTTR*SSSSTH
Trigger: GTGGGTGGAGGAGCTGGAGCAGCGGGTTGTCCTCTC...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGTCCCCCTGCCACCGATaGCTGCCCTTCTTGATGCGC +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKSPCHR*LPFLMR
Trigger: GCGCATCAAGAAGGGCAGCCATCGGTGGCAGGGGGA...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGGAGGAGGCCAGCAGCTaGAGGGAGGGAGTAGGTTGG +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEEEASS*REGVGW
Trigger: CCAACCTACTCCCTCCCTCCAGCTGCTGGCCTCCTC...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGCCCCAAGGATACCGTTaGGCGGGTATTGTCCCCCAG +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKPQGYR*AGIVPQ
Trigger: CTGGGGGACAATACCCGCTCAACGGTATCCTTGGGG...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGAACCAGGGATGCGTGTaGAGTCAGGCAGGGGCTGGT +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKNQGCV*SQAGAG
Trigger: ACCAGCCCCTGCCTGACTTCACACGCATCCCTGGTT...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCGGACCAGGGCAGGACTaGGCCTCATCAGGCTCGGGC +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLGPGQD*ASSGSG
Trigger: GCCCGAGCCTGATGAGGCTCAGTCCTGCCCTGGTCC...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGGGACCAGGGCAGGACTaGGCCTCATCAGGCTCGGGC +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGGPGQD*ASSGSG
Trigger: GCCCGAGCCTGATGAGGCTCAGTCCTGCCCTGGTCC...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTGGACCAGGGCAGGACTaGGCCTCATCAGGCTCGGGC +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCGPGQD*ASSGSG
Trigger: GCCCGAGCCTGATGAGGCTCAGTCCTGCCCTGGTCC...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGGGGGATGCAGTGCCTTaGGCAGGACATCCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEGDAVP*AGHPVS
Trigger: AGACACTGGATGTCCTGCTCAAGGCACTGCATCCCC...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGTCACGGCGGACACTGTaGACCACATTTCGGCTCAGG +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWESRRTL*TTFRLR
Trigger: CCTGAGCCGAAATGTGGTGCACAGTGTCCGCCGTGA...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGGGACTGAAGCTGAAGTaGTCACGGCGGACACTGTGC +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEGLKLK*SRRTLC
Trigger: GCACAGTGTCCGCCGTGAGCACTTCAGCTTCAGTCC...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGATAGCCTGCTGCCTCTaGTGCTCCTCTAGCCGCTTC +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEIACCL*CSSSRF
Trigger: GAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGCTAT...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGGCGCCTTCTCCCGGATaGCTCGGGGATGCAGTGCCT +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEAPSPG*LGDAVP
Trigger: AGGCACTGCATCCCCGAGGCATCCGGGAGAAGGCGC...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGGGGCACCATTGGGTGTaGTCAGTAGGGCCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEGHHWV*SVGPSP
Trigger: TGGAGAAGGCCCTACTGAGCACACCCAATGGTGCCC...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCTCTACAGGATGGCCTaGCTCTGGGCCCTTCCTTCC +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAELYRMA*LWALPS
Trigger: GGAAGGAAGGGCCCAGAGCCAGGCCATCCTGTAGAG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACATCTCCCCCTCCGCTTTaGTTGCCCCAGCCCAGTGGG +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTSPPPL*LPQPSG
Trigger: CCCACTGGGCTGGGGCAACCAAAGCGGAGGGGGAGA...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGCATCAGGGGCACCATTaGGTGTGCTCAGTAGGGCCT +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEHQGHH*VCSVGP
Trigger: AGGCCCTACTGAGCACACCCAATGGTGCCCCTGATG...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGAGACAGCCCGTCTTCTaGGTACCGAGGCACTGCTGG +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKRQPVF*VPRHCW
Trigger: CCAGCAGTGCCTCGGTACCCAGAAGACGGGCTGTCT...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CAA 72 bp CAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTaGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCG +
Preference number: 4 (lower is better)
Translates to: QHVQGPVSGSTH*GVKSTLLAVTA
Trigger: CGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGGACAAAGATGGAGGCTaGTGTCTGGCTGTCGTCTGC +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEDKDGG*CLAVVC
Trigger: GCAGACGACAGCCAGACATCAGCCTCCATCTTTGTC...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGGGCTGGCAGAGCAGGTaGGGAAGCTGGAGAGACTGC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEGWQSR*GSWRDC
Trigger: GCAGTCTCTCCAGCTTCCTCACCTGCTCTGCCAGCC...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGAGAAGGCAGACTGGCTaGGGTCATGCTGGCTCTGAC +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAERRQTG*GHAGSD
Trigger: GTCAGAGCCAGCATGACCTCAGCCAGTCTGCCTTCT...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGAGGGAGTTGTGGCTCTaGGTCTGGCTCAGCCAAGAC +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKRELWL*VWLSQD
Trigger: GTCTTGGCTGAGCCAGACTCAGAGCCACAACTCCCT...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGATAGCCTGCTGCCTCTaGTGCTCCTCTAGCCGCTTC +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKIACCL*CSSSRF
Trigger: GAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGCTAT...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGTCCTCCAGGATAGCCTaGTGCCTCTGCTGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAESSRIA*CLCCSS
Trigger: AGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGAGGA...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGCGCACCAGCAGGTCCTaGACTTTGTCCAAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWERTSRS*TLSKLS
Trigger: TGACAGCTTGGACAAAGTGCAGGACCTGCTGGTGCG...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGCTTCTTTTCGACCCCTaGGGCCATGGACAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWELLFDP*GHGQLL
Trigger: CAACAGCTGTCCATGGCCGCAGGGGTCGAAAAGAAG...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTGCGCCTTCTCCCGGATaGCTCGGGGATGCAGTGCCT +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPAPSPG*LGDAVP
Trigger: AGGCACTGCATCCCCGAGGCATCCGGGAGAAGGCGC...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTGCGCCTTCTCCCGGATaGCTCGGGGATGCAGTGCCT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCAPSPG*LGDAVP
Trigger: AGGCACTGCATCCCCGAGGCATCCGGGAGAAGGCGC...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGAGAGGACAACCCGCTaGTCCAGCTCCTCCACCCAC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLERTTR*SSSSTH
Trigger: GTGGGTGGAGGAGCTGGAGCAGCGGGTTGTCCTCTC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGAGGCTTCCAAAGAGATaGCTGGCAGAGCAGGTGAGG +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWERLPKR*LAEQVR
Trigger: CCTCACCTGCTCTGCCAGCCATCTCTTTGGAAGCCT...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGTCCCCCTGCCACCGATaGCTGCCCTTCTTGATGCGC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLESPCHR*LPFLMR
Trigger: GCGCATCAAGAAGGGCAGCCATCGGTGGCAGGGGGA...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGGCTTCCTCTTGTTTCTaGCCTGCCCTTGGACAGGAG +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEASSCF*PALGQE
Trigger: CTCCTGTCCAAGGGCAGGCCAGAAACAAGAGGAAGC...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCTCCAGGCAAGTGAGTaGAAGAGAGCTGCACTGGGG +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAELQASE*KRAALG
Trigger: CCCCAGTGCAGCTCTCTTCCACTCACTTGCCTGGAG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCTCTCCCCCTCCGCTTTaGTTGCCCCAGCCCAGTGGG +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLSPPPL*LPQPSG
Trigger: CCCACTGGGCTGGGGCAACCAAAGCGGAGGGGGAGA...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGAGCTCCTCCACCCACTaGAGCACAGCTAGGTCTGTC +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKSSSTH*STARSV
Trigger: GACAGACCTAGCTGTGCTCCAGTGGGTGGAGGAGCT...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACATCCACTACCACCTCATaGGCTGCCCAGAGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTSTTTS*AAQRGS
Trigger: GGAGCCCCTCTGGGCAGCCCATGAGGTGGTAGTGGA...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGTCCACTACCACCTCATaGGCTGCCCAGAGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLESTTTS*AAQRGS
Trigger: GGAGCCCCTCTGGGCAGCCCATGAGGTGGTAGTGGA...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCATCAGGGGCACCATTaGGTGTGCTCAGTAGGGCCT +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEHQGHH*VCSVGP
Trigger: AGGCCCTACTGAGCACACCCAATGGTGCCCCTGATG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCAGAGGGTTTCAGTCCTaGGGCAGCTGGTGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLRGFQS*GSWCRR
Trigger: CCTCCTGCACCAGCTGCCTCAGGACTGAAACCCTCT...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGAGAGGGTTTCAGTCCTaGGGCAGCTGGTGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLERGFQS*GSWCRR
Trigger: CCTCCTGCACCAGCTGCCTCAGGACTGAAACCCTCT...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGAGGGTGATGGAGGTGTaGGGTGCTAGAGGAGTGGGG +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLERVMEV*GARGVG
Trigger: CCCCACTCCTCTAGCACCTCACACCTCCATCACCCT...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCTGTCCCCCAGGGAACTaGGAAAGAAGGGGTGGGTCC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLCPPGN*ERRGGS
Trigger: GGACCCACCCCTTCTTTCTCAGTTCCCTGGGGGACA...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACAGTCCGGCGTGAGGACTaGGCTGCTCAACAGGGAGTT +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTVRRED*AAQQGV
Trigger: AACTCCCTGTTGAGCAGCTCAGTCCTCACGCCGGAC...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCCCAGTGGGACTCTGTaGCATTTCTTCAGAGTCCCC +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEPSGTL*HFFRVP
Trigger: GGGGACTCTGAAGAAATGTCACAGAGTCCCACTGGG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGGGCAGGTCACTTTGTTaGCAGACTTCTCCCACGCGA +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEGRSLC*QTSPTR
Trigger: TCGCGTGGGAGAAGTCTGTCAACAAAGTGACCTGCC...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGGGAAAACCAGGCCTCTaGGTGTACTCTTCCTCTACC +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEGKPGL*VYSSST
Trigger: GGTAGAGGAAGAGTACACTCAGAGGCCTGGTTTTCC...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGAGCTGCAAACTCTTCTaGGCTAGTGTACCCTCCACG +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWESCKLF*ASVPST
Trigger: CGTGGAGGGTACACTAGCTCAGAAGAGTTTGCAGCT...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGTCTCTTCGCCACCCATaGTGGAGGGGAAGACGAACT +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKSLRHP*WRGRRT
Trigger: AGTTCGTCTTCCCCTCCAGCATGGGTGGCGAAGAGA...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGGCCTGCTGCCTCTGCTaGTCCTCTAGCCGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEACCLC*SSSRFC
Trigger: ACAGAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGC...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGACCAGGATCATGGAGTaGAGCCTTCAGCAGTCGCAC +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKTRIME*SLQQSH
Trigger: GTGCGACTGCTGAAGGCTGCACTCCATGATCCTGGT...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGACCAGGATCATGGAGTaGAGCCTTCAGCAGTCGCAC +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAETRIME*SLQQSH
Trigger: GTGCGACTGCTGAAGGCTGCACTCCATGATCCTGGT...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCTTCTTTTCGACCCCTaGGGCCATGGACAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAELLFDP*GHGQLL
Trigger: CAACAGCTGTCCATGGCCGCAGGGGTCGAAAAGAAG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGGCCTCGGGGATGCAGTaGCTTGAGCAGGACATCCAG +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEASGMQ*LEQDIQ
Trigger: CTGGATGTCCTGCTCAAGGCACTGCATCCCCGAGGC...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGAGGCGAGGATGCTACTaGAGAGACAGCTGGAGAGAT +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWERRGCY*RDSWRD
Trigger: ATCTCTCCAGCTGTCTCTCCAGTAGCATCCTCGCCT...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCTTCGCCACCCATGCTaGAGGGGAAGACGAACTTCT +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAELRHPC*RGRRTS
Trigger: AGAAGTTCGTCTTCCCCTCCAGCATGGGTGGCGAAG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGCTTCGCCACCCATGCTaGAGGGGAAGACGAACTTCT +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKLRHPC*RGRRTS
Trigger: AGAAGTTCGTCTTCCCCTCCAGCATGGGTGGCGAAG...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGATGGCCTGGCTCTaGGCCCTTCCTTCCCCTTCG +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGRMAWL*ALPSPS
Trigger: CGAAGGGGAAGGAAGGGCCCAGAGCCAGGCCATCCT...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGAAGTCAGGCAGGGGCTaGTGGTCAGACAGACACATA +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEKSGRG*WSDRHI
Trigger: TATGTGTCTGTCTGACCACCAGCCCCTGCCTGACTT...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGAGGGAGGGAGTAGGTTaGTCCTCAGAGACTGCAGGA +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKREGVG*SSETAG
Trigger: TCCTGCAGTCTCTGAGGACCAACCTACTCCCTCCCT...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGAGGGAGGGAGTAGGTTaGTCCTCAGAGACTGCAGGA +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEREGVG*SSETAG
Trigger: TCCTGCAGTCTCTGAGGACCAACCTACTCCCTCCCT...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTGAGGAGGCCAGCAGCTaGAGGGAGGGAGTAGGTTGG +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPEEASS*REGVGW
Trigger: CCAACCTACTCCCTCCCTCCAGCTGCTGGCCTCCTC...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCGAGGAGGCCAGCAGCTaGAGGGAGGGAGTAGGTTGG +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLEEASS*REGVGW
Trigger: CCAACCTACTCCCTCCCTCCAGCTGCTGGCCTCCTC...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGGAGGAGGCCAGCAGCTaGAGGGAGGGAGTAGGTTGG +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGEEASS*REGVGW
Trigger: CCAACCTACTCCCTCCCTCCAGCTGCTGGCCTCCTC...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CAA 72 bp TCACCTGGCATCCTCCGCCCACCCATGGAACATTGCTaGGATGCCTTGGCTCCCTGCTTAGGTCAGCTAGCA +
Preference number: 4 (lower is better)
Translates to: SPGILRPPMEHC*DALAPCLGQLA
Trigger: TGCTAGCTGACCTAAGCAGGGAGCCAAGGCATCCAAGCAATGTTCCATGGGTGGGCGGAGGATGCCAGGTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTAGGGTGATGGAGGTGTaGGGTGCTAGAGGAGTGGGG +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPRVMEV*GARGVG
Trigger: CCCCACTCCTCTAGCACCTCACACCTCCATCACCCT...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGTGATGGAGGTGTaGGGTGCTAGAGGAGTGGGG +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGRVMEV*GARGVG
Trigger: CCCCACTCCTCTAGCACCTCACACCTCCATCACCCT...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTTGTCCCCCAGGGAACTaGGAAAGAAGGGGTGGGTCC +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPCPPGN*ERRGGS
Trigger: GGACCCACCCCTTCTTTCTCAGTTCCCTGGGGGACA...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTCCCCAAGGATACCGTTaGGCGGGTATTGTCCCCCAG +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPPQGYR*AGIVPQ
Trigger: CTGGGGGACAATACCCGCTCAACGGTATCCTTGGGG...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGCCCCAAGGATACCGTTaGGCGGGTATTGTCCCCCAG +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGPQGYR*AGIVPQ
Trigger: CTGGGGGACAATACCCGCTCAACGGTATCCTTGGGG...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGTCCAAGCTGTCACCTTaGCATAAGAGTCCCTCCTGC +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAESKLSP*HKSPSC
Trigger: GCAGGAGGGACTCTTATGTCAAGGTGACAGCTTGGA...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGAGAAGGCAGACTGGCTaGGGTCATGCTGGCTCTGAC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLERRQTG*GHAGSD
Trigger: GTCAGAGCCAGCATGACCTCAGCCAGTCTGCCTTCT...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACAAGGGAGTTGTGGCTCTaGGTCTGGCTCAGCCAAGAC +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTRELWL*VWLSQD
Trigger: GTCTTGGCTGAGCCAGACTCAGAGCCACAACTCCCT...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGGTCCGGCGTGAGGACTaGGCTGCTCAACAGGGAGTT +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGVRRED*AAQQGV
Trigger: AACTCCCTGTTGAGCAGCTCAGTCCTCACGCCGGAC...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCAAAGAAGCGTCGCATaGCGTGCCCAGCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLQRSVA*RAQPCP
Trigger: TGGGCAAGGCTGGGCACGTCATGCGACGCTTCTTTG...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCCTCCAGCTCCAGGCTaGCTACCAAGCCAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCPPAPG*LPSQCH
Trigger: ATGGCACTGGCTTGGTAGGCAGCCTGGAGCTGGAGG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTCCTCCAGCTCCAGGCTaGCTACCAAGCCAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPPPAPG*LPSQCH
Trigger: ATGGCACTGGCTTGGTAGGCAGCCTGGAGCTGGAGG...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGATCTTTAGTTCTGGCTaGTCTTCCTCCAGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEIFSSG*SSSSSR
Trigger: CCTGGAGCTGGAGGAAGAGCAGCCAGAACTAAAGAT...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGAGGCAACTTGTCTTCTaGACCCATCAGCTCCGCATC +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKRQLVF*THQLRI
Trigger: GATGCGGAGCTGATGGGTGCAGAAGACAAGTTGCCT...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGAGAGATTTCTGCAGATaGTGTCAAGGAGGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWERDFCR*CQGGCW
Trigger: CCAGCAGCCTCCTTGACAGCATCTGCAGAAATCTCT...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGAGCTGGAGAGATTTCTaGAGATGCTGTCAAGGAGGC +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWESWRDF*RCCQGG
Trigger: GCCTCCTTGACAGCATCTGCAGAAATCTCTCCAGCT...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGACCAGAGACTGCAACTaGTCCTCCAGTCGTCTCTTC +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAETRDCN*SSSRLF
Trigger: GAAGAGACGACTGGAGGAGCAGTTGCAGTCTCTGGT...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGTACCAAGTCTCCCCCTaGCACCGATGGCTGCCCTTC +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGYQVSP*HRWLPF
Trigger: GAAGGGCAGCCATCGGTGGCAGGGGGAGACTTGGTA...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGGGACTGAAGCTGAAGTaGTCACGGCGGACACTGTGC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEGLKLK*SRRTLC
Trigger: GCACAGTGTCCGCCGTGAGCACTTCAGCTTCAGTCC...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACAGGACTGAAGCTGAAGTaGTCACGGCGGACACTGTGC +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTGLKLK*SRRTLC
Trigger: GCACAGTGTCCGCCGTGAGCACTTCAGCTTCAGTCC...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGGACTGAAGCTGAAGTaGTCACGGCGGACACTGTGC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLGLKLK*SRRTLC
Trigger: GCACAGTGTCCGCCGTGAGCACTTCAGCTTCAGTCC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTGCCTGCTGCCTCTGCTaGTCCTCTAGCCGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCACCLC*SSSRFC
Trigger: ACAGAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGC...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCGCCTGCTGCCTCTGCTaGTCCTCTAGCCGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLACCLC*SSSRFC
Trigger: ACAGAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGC...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCATAGCCTGCTGCCTCTaGTGCTCCTCTAGCCGCTTC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLIACCL*CSSSRF
Trigger: GAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGCTAT...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCTCCAGGATAGCCTGCTaGCTCTGCTGCTCCTCTAGC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLSRIAC*LCCSSS
Trigger: GCTAGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGA...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGGCCTCGGGGATGCAGTaGCTTGAGCAGGACATCCAG +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGASGMQ*LEQDIQ
Trigger: CTGGATGTCCTGCTCAAGGCACTGCATCCCCGAGGC...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCGCCTCGGGGATGCAGTaGCTTGAGCAGGACATCCAG +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLASGMQ*LEQDIQ
Trigger: CTGGATGTCCTGCTCAAGGCACTGCATCCCCGAGGC...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTCGGATGCCTCGGGGATaGAGTGCCTTGAGCAGGACA +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPRMPRG*SALSRT
Trigger: TGTCCTGCTCAAGGCACTGCATCCCCGAGGCATCCG...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGCGGATGCCTCGGGGATaGAGTGCCTTGAGCAGGACA +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGRMPRG*SALSRT
Trigger: TGTCCTGCTCAAGGCACTGCATCCCCGAGGCATCCG...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCGGATGCCTCGGGGATaGAGTGCCTTGAGCAGGACA +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLRMPRG*SALSRT
Trigger: TGTCCTGCTCAAGGCACTGCATCCCCGAGGCATCCG...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGGCGCCTTCTCCCGGATaGCTCGGGGATGCAGTGCCT +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGAPSPG*LGDAVP
Trigger: AGGCACTGCATCCCCGAGGCATCCGGGAGAAGGCGC...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGGGCACCATTGGGTGTaGTCAGTAGGGCCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLGHHWV*SVGPSP
Trigger: TGGAGAAGGCCCTACTGAGCACACCCAATGGTGCCC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGAAGCGTCGCATGACGTaGCCAGCCTTGCCCACTTCA +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEKRRMT*PALPTS
Trigger: TGAAGTGGGCAAGGCTGGGCACGTCATGCGACGCTT...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCTGAGAAAGAAGGGGTaGGTCCTTGAGGTTGTTGCC +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAELRKKG*VLEVVA
Trigger: GGCAACAACCTCAAGGACCCACCCCTTCTTTCTCAG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCAGCCCCATGGGACTCTaGGTACCATTGGCCCAGAAC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLSPMGL*VPLAQN
Trigger: GTTCTGGGCCAATGGTACCCAGAGTCCCATGGGGCT...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGTCAGTCAGGGGACGTTaGAAGTTTGAAGACTGGGTC +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWESVRGR*KFEDWV
Trigger: GACCCAGTCTTCAAACTTCCAACGTCCCCTGACTGA...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGTCCTCTGCTGATAACTaGACCCACTGCAAGCCCTCT +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKSSADN*THCKPS
Trigger: AGAGGGCTTGCAGTGGGTCCAGTTATCAGCAGAGGA...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTCTCTACAGGATGGCCTaGCTCTGGGCCCTTCCTTCC +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPLYRMA*LWALPS
Trigger: GGAAGGAAGGGCCCAGAGCCAGGCCATCCTGTAGAG...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGAAGTCAGGCAGGGGCTaGTGGTCAGACAGACACATA +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKKSGRG*WSDRHI
Trigger: TATGTGTCTGTCTGACCACCAGCCCCTGCCTGACTT...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGCTGAGAAAGCCCTACTaGACAGTGTCAAACCAGGGA +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWELRKPY*TVSNQG
Trigger: TCCCTGGTTTGACACTGTCCAGTAGGGCTTTCTCAG...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACACTGAGGCTGGGGTTCTaGGTGAACTTGAGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTLRLGF*VNLSLG
Trigger: GCCCAGACTCAAGTTCACCCAGAACCCCAGCCTCAG...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCCTGAGGCTGGGGTTCTaGGTGAACTTGAGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLLRLGF*VNLSLG
Trigger: GCCCAGACTCAAGTTCACCCAGAACCCCAGCCTCAG...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGCTGAGGCTGGGGTTCTaGGTGAACTTGAGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLELRLGF*VNLSLG
Trigger: GCCCAGACTCAAGTTCACCCAGAACCCCAGCCTCAG...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGAGAGACTGCAGGAGGTaGTGTAGGAGCAGCATCACA +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAERDCRR*CRSSIT
Trigger: TGTGATGCTGCTCCTACACCACCTCCTGCAGTCTCT...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACACTCCAGGCAAGTGAGTaGAAGAGAGCTGCACTGGGG +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTLQASE*KRAALG
Trigger: CCCCAGTGCAGCTCTCTTCCACTCACTTGCCTGGAG...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGCTCCAGGCAAGTGAGTaGAAGAGAGCTGCACTGGGG +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLELQASE*KRAALG
Trigger: CCCCAGTGCAGCTCTCTTCCACTCACTTGCCTGGAG...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGCCGGCTGTCACCTTCTaGGAAGGTCAGTGGAAAACT +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKPAVTF*EGQWKT
Trigger: AGTTTTCCACTGACCTTCCCAGAAGGTGACAGCCGG...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGACAGCCCGTCTTCTaGGTACCGAGGCACTGCTGG +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGRQPVF*VPRHCW
Trigger: CCAGCAGTGCCTCGGTACCCAGAAGACGGGCTGTCT...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGGGAGTGTCTTCCAGTTaGTCAGGAAGATGTGAAGGA +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEGVSSS*SGRCEG
Trigger: TCCTTCACATCTTCCTGATCAACTGGAAGACACTCC...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGGACAAAGATGGAGGCTaGTGTCTGGCTGTCGTCTGC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEDKDGG*CLAVVC
Trigger: GCAGACGACAGCCAGACATCAGCCTCCATCTTTGTC...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGACAAAGATGGAGGCTaGTGTCTGGCTGTCGTCTGC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLDKDGG*CLAVVC
Trigger: GCAGACGACAGCCAGACATCAGCCTCCATCTTTGTC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGGGCTGGCAGAGCAGGTaGGGAAGCTGGAGAGACTGC +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLGWQSR*GSWRDC
Trigger: GCAGTCTCTCCAGCTTCCTCACCTGCTCTGCCAGCC...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGGGTTCAGGGGAACCTTaGGGAGAAGTTACTGGAGTT +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEGSGEP*GEVTGV
Trigger: AACTCCAGTAACTTCTCCTCAAGGTTCCCCTGAACC...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGGATGGCTGCCCTTCTTaGTGCGCACTTCTCTTCGCC +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGDGCPS*CALLFA
Trigger: GGCGAAGAGAAGTGCGCATCAAGAAGGGCAGCCATC...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCCTTGGACAGGAGTCTaGCTTTCTCCCCGTTGGACC +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCPWTGV*LSPRWT
Trigger: GGTCCAACGGGGAGAAAGTCAGACTCCTGTCCAAGG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGCCTTGGACAGGAGTCTaGCTTTCTCCCCGTTGGACC +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGPWTGV*LSPRWT
Trigger: GGTCCAACGGGGAGAAAGTCAGACTCCTGTCCAAGG...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGGGTCAATGGGATCTCTaGCATCTTCTCCCCCAATAT +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEGQWDL*HLLPQY
Trigger: ATATTGGGGGAGAAGATGTCAGAGATCCCATTGACC...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCCACTCTATATGCCATaGGGAAGCAGCGCAGTATCT +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEPLYMP*GSSAVS
Trigger: AGATACTGCGCTGCTTCCTCATGGCATATAGAGTGG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCACTGGTTTCCTCCATaGTCCGAGAACTGCGCCTCC +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLHWFPP*SENCAS
Trigger: GGAGGCGCAGTTCTCGGATCATGGAGGAAACCAGTG...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCACTGGTTTCCTCCATaGTCCGAGAACTGCGCCTCC +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCHWFPP*SENCAS
Trigger: GGAGGCGCAGTTCTCGGATCATGGAGGAAACCAGTG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCAGAAGGCAGACTGGCTaGGGTCATGCTGGCTCTGAC +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLRRQTG*GHAGSD
Trigger: GTCAGAGCCAGCATGACCTCAGCCAGTCTGCCTTCT...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCGGACCAGGGCAGGACTaGGCCTCATCAGGCTCGGGC +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTIGPGQD*ASSGSG
Trigger: GCCCGAGCCTGATGAGGCTCAGTCCTGCCCTGGTCC...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCGTCCCTCCAGGCAAGTaGGTGGAAGAGAGCTGCACT +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLVPPGK*VEESCT
Trigger: AGTGCAGCTCTCTTCCACTCACTTGCCTGGAGGGAC...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGGTCCCTCCAGGCAAGTaGGTGGAAGAGAGCTGCACT +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGVPPGK*VEESCT
Trigger: AGTGCAGCTCTCTTCCACTCACTTGCCTGGAGGGAC...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGGGGGATGCAGTGCCTTaGGCAGGACATCCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGGDAVP*AGHPVS
Trigger: AGACACTGGATGTCCTGCTCAAGGCACTGCATCCCC...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
56% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGGCAGGTCACTTTGTTaGCAGACTTCTCCCACGCGA +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLGRSLC*QTSPTR
Trigger: TCGCGTGGGAGAAGTCTGTCAACAAAGTGACCTGCC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGCAGGATGGATGTCACTaGTTACATCCTGGGAAGGTG +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKQDGCH*LHPGKV
Trigger: CACCTTCCCAGGATGTAAGCAGTGACATCCATCCTG...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGTGCCTACCAAGCCAGTaGCATTTTCTGCCACAACTG +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAECLPSQ*HFLPQL
Trigger: CAGTTGTGGCAGAAAATGGCACTGGCTTGGTAGGCA...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGATCTTTAGTTCTGGCTaGTCTTCCTCCAGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEIFSSG*SSSSSR
Trigger: CCTGGAGCTGGAGGAAGAGCAGCCAGAACTAAAGAT...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGACTCACTGGCTCTGCTaGCAGAGAGTCAAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLETHWLC*QRVKGL
Trigger: GAGCCCTTTGACTCTCTGGCAGCAGAGCCAGTGAGT...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045621.9
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCAGTCTGGAAGGCAGCTaGTGGAGAAGGTTCAGGGGA +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLSLEGS*WRRFRG
Trigger: TCCCCTGAACCTTCTCCAGCAGCTGCCTTCCAGACT...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACATCTCTTCGCCACCCATaGTGGAGGGGAAGACGAACT +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTSLRHP*WRGRRT
Trigger: AGTTCGTCTTCCCCTCCAGCATGGGTGGCGAAGAGA...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTTCACGGCGGACACTGTaGACCACATTTCGGCTCAGG +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPSRRTL*TTFRLR
Trigger: CCTGAGCCGAAATGTGGTGCACAGTGTCCGCCGTGA...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTATAGCCTGCTGCCTCTaGTGCTCCTCTAGCCGCTTC +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPIACCL*CSSSRF
Trigger: GAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGCTAT...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCTCCAGGATAGCCTGCTaGCTCTGCTGCTCCTCTAGC +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLSRIAC*LCCSSS
Trigger: GCTAGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGA...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTTCCTCCAGGATAGCCTaGTGCCTCTGCTGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCSSRIA*CLCCSS
Trigger: AGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGAGGA...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTTCCTCCAGGATAGCCTaGTGCCTCTGCTGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPSSRIA*CLCCSS
Trigger: AGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGAGGA...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGCGCACCAGCAGGTCCTaGACTTTGTCCAAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLERTSRS*TLSKLS
Trigger: TGACAGCTTGGACAAAGTGCAGGACCTGCTGGTGCG...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGGAGAGGACAACCCGCTaGTCCAGCTCCTCCACCCAC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGERTTR*SSSSTH
Trigger: GTGGGTGGAGGAGCTGGAGCAGCGGGTTGTCCTCTC...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGTACCACCTCATGGGCTaGCCAGAGGGGCTCCCGCAA +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLYHLMG*PEGLPQ
Trigger: TTGCGGGAGCCCCTCTGGGCAGCCCATGAGGTGGTA...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTGGGCACCATTGGGTGTaGTCAGTAGGGCCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPGHHWV*SVGPSP
Trigger: TGGAGAAGGCCCTACTGAGCACACCCAATGGTGCCC...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTAAGCGTCGCATGACGTaGCCAGCCTTGCCCACTTCA +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCKRRMT*PALPTS
Trigger: TGAAGTGGGCAAGGCTGGGCACGTCATGCGACGCTT...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCAAGCGTCGCATGACGTaGCCAGCCTTGCCCACTTCA +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLKRRMT*PALPTS
Trigger: TGAAGTGGGCAAGGCTGGGCACGTCATGCGACGCTT...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTAGCCCCATGGGACTCTaGGTACCATTGGCCCAGAAC +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCSPMGL*VPLAQN
Trigger: GTTCTGGGCCAATGGTACCCAGAGTCCCATGGGGCT...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGACTAGACCCCAACATTaGAGAAGTCTGAGGGGAGGT +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAETRPQH*RSLRGG
Trigger: ACCTCCCCTCAGACTTCTCCAATGTTGGGGTCTAGT...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGTCACTGCTTACATCCTaGGAAGGTGCAAAGGTCTGG +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAESLLTS*EGAKVW
Trigger: CCAGACCTTTGCACCTTCCCAGGATGTAAGCAGTGA...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCTAGACAGCTCACTGTaGGATCAGGGACCAGGACGG +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCLDSSL*DQGPGR
Trigger: CCGTCCTGGTCCCTGATCCCACAGTGAGCTGTCTAG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGAGGCTTCCAAAGAGATaGCTGGCAGAGCAGGTGAGG +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLERLPKR*LAEQVR
Trigger: CCTCACCTGCTCTGCCAGCCATCTCTTTGGAAGCCT...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGGACATTTTTCCTTGCTaGGGAGACAGTCTGGAAGGC +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKDIFPC*GDSLEG
Trigger: GCCTTCCAGACTGTCTCCCCAGCAAGGAAAAATGTC...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACACTTCGCCACCCATGCTaGAGGGGAAGACGAACTTCT +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTLRHPC*RGRRTS
Trigger: AGAAGTTCGTCTTCCCCTCCAGCATGGGTGGCGAAG...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGTCCCCCTGCCACCGATaGCTGCCCTTCTTGATGCGC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGSPCHR*LPFLMR
Trigger: GCGCATCAAGAAGGGCAGCCATCGGTGGCAGGGGGA...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGGCTTCCTCTTGTTTCTaGCCTGCCCTTGGACAGGAG +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEASSCF*PALGQE
Trigger: CTCCTGTCCAAGGGCAGGCCAGAAACAAGAGGAAGC...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGAGGATGGCCTGGCTCTaGGCCCTTCCTTCCCCTTCG +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLRMAWL*ALPSPS
Trigger: CGAAGGGGAAGGAAGGGCCCAGAGCCAGGCCATCCT...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCCTAGCCGCTTCTGTGTaGCAAGGGTCTTGTCTGCTC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLLAASV*QGSCLL
Trigger: GAGCAGACAAGACCCTTGCCACACAGAAGCGGCTAG...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACAAGCCTTCTGTTGAGGTaGCTGGGCCTGAAAAGGCTG +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTSLLLR*LGLKRL
Trigger: CAGCCTTTTCAGGCCCAGCCACCTCAACAGAAGGCT...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTGCCGCCCAGTTCGCTTaGCCAGAGCAGTTTTCAGTC +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCAAQFA*PEQFSV
Trigger: GACTGAAAACTGCTCTGGCCAAGCGAACTGGGCGGC...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTGAGGCTGGGGTTCTaGGTGAACTTGAGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLLRLGF*VNLSLG
Trigger: GCCCAGACTCAAGTTCACCCAGAACCCCAGCCTCAG...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCTGAGGCTGGGGTTCTaGGTGAACTTGAGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCLRLGF*VNLSLG
Trigger: GCCCAGACTCAAGTTCACCCAGAACCCCAGCCTCAG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACAGACAAGAAGGCAGACTaGCTGAGGTCATGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTDKKAD*LRSCWL
Trigger: GAGCCAGCATGACCTCAGCCAGTCTGCCTTCTTGTC...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGACAAGAAGGCAGACTaGCTGAGGTCATGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLDKKAD*LRSCWL
Trigger: GAGCCAGCATGACCTCAGCCAGTCTGCCTTCTTGTC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACAAGGGAGGGAGTAGGTTaGTCCTCAGAGACTGCAGGA +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTREGVG*SSETAG
Trigger: TCCTGCAGTCTCTGAGGACCAACCTACTCCCTCCCT...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGGAAGAGAGCTGCACTaGGGAACAAGGATTGGCAGC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLGRELH*GTRIGS
Trigger: GCTGCCAATCCTTGTTCCCCAGTGCAGCTCTCTTCC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTCTCCAGGCAAGTGAGTaGAAGAGAGCTGCACTGGGG +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPLQASE*KRAALG
Trigger: CCCCAGTGCAGCTCTCTTCCACTCACTTGCCTGGAG...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCAGCTCCTCCACCCACTaGAGCACAGCTAGGTCTGTC +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLSSSTH*STARSV
Trigger: GACAGACCTAGCTGTGCTCCAGTGGGTGGAGGAGCT...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCATCAGGGGCACCATTaGGTGTGCTCAGTAGGGCCT +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLHQGHH*VCSVGP
Trigger: AGGCCCTACTGAGCACACCCAATGGTGCCCCTGATG...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCATCAGGGGCACCATTaGGTGTGCTCAGTAGGGCCT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCHQGHH*VCSVGP
Trigger: AGGCCCTACTGAGCACACCCAATGGTGCCCCTGATG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGATGGACCTTTCTAGCTaGCCCATGCACAAGCACACT +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEMDLSS*PMHKHT
Trigger: AGTGTGCTTGTGCATGGGCCAGCTAGAAAGGTCCAT...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCAAGACTGCCACTCACTaGCTCTGCTGCTGCCAGAGA +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLKTATH*LCCCQR
Trigger: TCTCTGGCAGCAGCAGAGCCAGTGAGTGGCAGTCTT...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170054.9
ENSMUST00000217851.2
CDS-3UTR TCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGCCCCAAGGATACCGTTaGGCGGGTATTGTCCCCCAG +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGPQGYR*AGIVPQ
Trigger: CTGGGGGACAATACCCGCTCAACGGTATCCTTGGGG...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGCGAAGATTAGTGTTGTaGCTTGGGGATGAAGGTTGT +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWERRLVL*LGDEGC
Trigger: ACAACCTTCATCCCCAAGTCACAACACTAATCTTCG...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTGACAAAGATGGAGGCTaGTGTCTGGCTGTCGTCTGC +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPDKDGG*CLAVVC
Trigger: GCAGACGACAGCCAGACATCAGCCTCCATCTTTGTC...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGGGGACGTTGGAAGTTTaGAGACTGGGTCTCTATTTC +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKGTLEV*RLGLYF
Trigger: GAAATAGAGACCCAGTCTTCAAACTTCCAACGTCCC...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGGTCCGGCGTGAGGACTaGGCTGCTCAACAGGGAGTT +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGVRRED*AAQQGV
Trigger: AACTCCCTGTTGAGCAGCTCAGTCCTCACGCCGGAC...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGCTCGGACACGAGGGGTaGTCTCATAGGATATCTCAG +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLELGHEG*SHRISQ
Trigger: CTGAGATATCCTATGAGATCACCCCTCGTGTCCGAG...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACAGGAAAACCAGGCCTCTaGGTGTACTCTTCCTCTACC +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTGKPGL*VYSSST
Trigger: GGTAGAGGAAGAGTACACTCAGAGGCCTGGTTTTCC...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCAGCTGCAAACTCTTCTaGGCTAGTGTACCCTCCACG +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLSCKLF*ASVPST
Trigger: CGTGGAGGGTACACTAGCTCAGAAGAGTTTGCAGCT...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGCAAAGAAGCGTCGCATaGCGTGCCCAGCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGQRSVA*RAQPCP
Trigger: TGGGCAAGGCTGGGCACGTCATGCGACGCTTCTTTG...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGCAAAGAAGCGTCGCATaGCGTGCCCAGCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLQRSVA*RAQPCP
Trigger: TGGGCAAGGCTGGGCACGTCATGCGACGCTTCTTTG...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGCCTCCAGCTCCAGGCTaGCTACCAAGCCAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGPPAPG*LPSQCH
Trigger: ATGGCACTGGCTTGGTAGGCAGCCTGGAGCTGGAGG...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTACTCACTGGCTCTGCTaGCAGAGAGTCAAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCTHWLC*QRVKGL
Trigger: GAGCCCTTTGACTCTCTGGCAGCAGAGCCAGTGAGT...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045621.9
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGCTATACCATAAAGACTaGCACTCACTGGCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKLYHKD*HSLALL
Trigger: CAGCAGAGCCAGTGAGTGGCAGTCTTTATGGTATAG...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGAGGCAACTTGTCTTCTaGACCCATCAGCTCCGCATC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLERQLVF*THQLRI
Trigger: GATGCGGAGCTGATGGGTGCAGAAGACAAGTTGCCT...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACACAGAGATCACAGGGTTaGCCTCCAGAGGCAACTTGT +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTQRSQG*PPEATC
Trigger: ACAAGTTGCCTCTGGAGGGCAACCCTGTGATCTCTG...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCCTGTTCAGAGTCACTaGAACTGTTCAGTCCAAAGC +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEPVQSH*NCSVQS
Trigger: GCTTTGGACTGAACAGTTGCAGTGACTCTGAACAGG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCACCAGAGACTGCAACTaGTCCTCCAGTCGTCTCTTC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLTRDCN*SSSRLF
Trigger: GAAGAGACGACTGGAGGAGCAGTTGCAGTCTCTGGT...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTTCTCTTCGCCACCCATaGTGGAGGGGAAGACGAACT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCSLRHP*WRGRRT
Trigger: AGTTCGTCTTCCCCTCCAGCATGGGTGGCGAAGAGA...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGTACCAAGTCTCCCCCTaGCACCGATGGCTGCCCTTC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGYQVSP*HRWLPF
Trigger: GAAGGGCAGCCATCGGTGGCAGGGGGAGACTTGGTA...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCACCAGGATCATGGAGTaGAGCCTTCAGCAGTCGCAC +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLTRIME*SLQQSH
Trigger: GTGCGACTGCTGAAGGCTGCACTCCATGATCCTGGT...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACATGGCTCCACTCTATATaGCATGAGGAAGCAGCGCAG +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTWLHSI*HEEAAQ
Trigger: CTGCGCTGCTTCCTCATGGCATATAGAGTGGAGCCA...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTTTTCGACCCCTaGGGCCATGGACAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLLLFDP*GHGQLL
Trigger: CAACAGCTGTCCATGGCCGCAGGGGTCGAAAAGAAG...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGGAGAGGACAACCCGCTaGTCCAGCTCCTCCACCCAC +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKERTTR*SSSSTH
Trigger: GTGGGTGGAGGAGCTGGAGCAGCGGGTTGTCCTCTC...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTACCACCTCATGGGCTaGCCAGAGGGGCTCCCGCAA +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKYHLMG*PEGLPQ
Trigger: TTGCGGGAGCCCCTCTGGGCAGCCCATGAGGTGGTA...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGAAACTTTTCCCTTGCTaGGGGAAGTTCATGGGAGAC +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKKLFPC*GKFMGD
Trigger: GTCTCCCATGAACTTCCCCCAGCAAGGGAAAAGTTT...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGCTGAGAAAGAAGGGGTaGGTCCTTGAGGTTGTTGCC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLELRKKG*VLEVVA
Trigger: GGCAACAACCTCAAGGACCCACCCCTTCTTTCTCAG...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCCTGAGAAAGAAGGGGTaGGTCCTTGAGGTTGTTGCC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLLRKKG*VLEVVA
Trigger: GGCAACAACCTCAAGGACCCACCCCTTCTTTCTCAG...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGGAAGGTGCAAAGGTCTaGATACTAGACCCCAACATT +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEEGAKV*ILDPNI
Trigger: AATGTTGGGGTCTAGTATCCAGACCTTTGCACCTTC...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGAGGACGGAGACTTCTTaGTGTAAAGACTCCACAGAG +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAERTETS*CKDSTE
Trigger: CTCTGTGGAGTCTTTACACCAAGAAGTCTCCGTCCT...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGTACTGGAGAGACAGCTaGAGAGATTTCTGCAGATGC +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEYWRDS*RDFCRC
Trigger: GCATCTGCAGAAATCTCTCCAGCTGTCTCTCCAGTA...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGTACTGGAGAGACAGCTaGAGAGATTTCTGCAGATGC +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKYWRDS*RDFCRC
Trigger: GCATCTGCAGAAATCTCTCCAGCTGTCTCTCCAGTA...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACAAGGCGAGGATGCTACTaGAGAGACAGCTGGAGAGAT +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTRRGCY*RDSWRD
Trigger: ATCTCTCCAGCTGTCTCTCCAGTAGCATCCTCGCCT...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTAGGCTTCCAAAGAGATaGCTGGCAGAGCAGGTGAGG +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPRLPKR*LAEQVR
Trigger: CCTCACCTGCTCTGCCAGCCATCTCTTTGGAAGCCT...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTCTTCGCCACCCATGCTaGAGGGGAAGACGAACTTCT +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPLRHPC*RGRRTS
Trigger: AGAAGTTCGTCTTCCCCTCCAGCATGGGTGGCGAAG...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGAGGATGGCCTGGCTCTaGGCCCTTCCTTCCCCTTCG +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKRMAWL*ALPSPS
Trigger: CGAAGGGGAAGGAAGGGCCCAGAGCCAGGCCATCCT...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGCTCTACAGGATGGCCTaGCTCTGGGCCCTTCCTTCC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGLYRMA*LWALPS
Trigger: GGAAGGAAGGGCCCAGAGCCAGGCCATCCTGTAGAG...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTGGCAGACCAGGATCATaGAGTGCAGCCTTCAGCAGT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCGRPGS*SAAFSS
Trigger: ACTGCTGAAGGCTGCACTCCATGATCCTGGTCTGCC...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCGGCAGACCAGGATCATaGAGTGCAGCCTTCAGCAGT +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLGRPGS*SAAFSS
Trigger: ACTGCTGAAGGCTGCACTCCATGATCCTGGTCTGCC...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTGACAAGAAGGCAGACTaGCTGAGGTCATGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCDKKAD*LRSCWL
Trigger: GAGCCAGCATGACCTCAGCCAGTCTGCCTTCTTGTC...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGAGAGACTGCAGGAGGTaGTGTAGGAGCAGCATCACA +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLERDCRR*CRSSIT
Trigger: TGTGATGCTGCTCCTACACCACCTCCTGCAGTCTCT...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCAGGGAGGGAGTAGGTTaGTCCTCAGAGACTGCAGGA +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLREGVG*SSETAG
Trigger: TCCTGCAGTCTCTGAGGACCAACCTACTCCCTCCCT...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCCACTACCACCTCATaGGCTGCCCAGAGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKSTTTS*AAQRGS
Trigger: GGAGCCCCTCTGGGCAGCCCATGAGGTGGTAGTGGA...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGGAACAGCCTCCATCTTaGGCCGATGACAGTAAATGT +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKEQPPS*ADDSKC
Trigger: ACATTTACTGTCATCGGCCCAAGATGGAGGCTGTTC...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGGAACAGCCTCCATCTTaGGCCGATGACAGTAAATGT +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEEQPPS*ADDSKC
Trigger: ACATTTACTGTCATCGGCCCAAGATGGAGGCTGTTC...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGAGACAGCCCGTCTTCTaGGTACCGAGGCACTGCTGG +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLRQPVF*VPRHCW
Trigger: CCAGCAGTGCCTCGGTACCCAGAAGACGGGCTGTCT...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGAGGGTGATGGAGGTGTaGGGTGCTAGAGGAGTGGGG +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKRVMEV*GARGVG
Trigger: CCCCACTCCTCTAGCACCTCACACCTCCATCACCCT...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCCCCAAGGATACCGTTaGGCGGGTATTGTCCCCCAG +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKPQGYR*AGIVPQ
Trigger: CTGGGGGACAATACCCGCTCAACGGTATCCTTGGGG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGCGAAGATTAGTGTTGTaGCTTGGGGATGAAGGTTGT +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKRRLVL*LGDEGC
Trigger: ACAACCTTCATCCCCAAGTCACAACACTAATCTTCG...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCCCAGGGAGTCTTCACTaGGAATTGGAGTGTCTTCCA +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLPGSLH*ELECLP
Trigger: TGGAAGACACTCCAATTCTCAGTGAAGACTCCCTGG...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGGTTCAGGGGAACCTTaGGGAGAAGTTACTGGAGTT +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLGSGEP*GEVTGV
Trigger: AACTCCAGTAACTTCTCCTCAAGGTTCCCCTGAACC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGGATGGCTGCCCTTCTTaGTGCGCACTTCTCTTCGCC +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLDGCPS*CALLFA
Trigger: GGCGAAGAGAAGTGCGCATCAAGAAGGGCAGCCATC...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGGCCTCGTTTGCCAGTaGTTGCTTGAATTCTGGAAG +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLGLVCQ*LLEFWK
Trigger: CTTCCAGAATTCAAGCAATCACTGGCAAACGAGGCC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGGGCCTCGTTTGCCAGTaGTTGCTTGAATTCTGGAAG +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEGLVCQ*LLEFWK
Trigger: CTTCCAGAATTCAAGCAATCACTGGCAAACGAGGCC...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGCCTTGGACAGGAGTCTaGCTTTCTCCCCGTTGGACC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGPWTGV*LSPRWT
Trigger: GGTCCAACGGGGAGAAAGTCAGACTCCTGTCCAAGG...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGAACCAGGGATGCGTGTaGAGTCAGGCAGGGGCTGGT +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKNQGCV*SQAGAG
Trigger: ACCAGCCCCTGCCTGACTTCACACGCATCCCTGGTT...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCTCCAAGCTGTCACCTTaGCATAAGAGTCCCTCCTGC +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLSKLSP*HKSPSC
Trigger: GCAGGAGGGACTCTTATGTCAAGGTGACAGCTTGGA...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGCACTGGTTTCCTCCATaGTCCGAGAACTGCGCCTCC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGHWFPP*SENCAS
Trigger: GGAGGCGCAGTTCTCGGATCATGGAGGAAACCAGTG...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGGGGGATGCAGTGCCTTaGGCAGGACATCCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGGDAVP*AGHPVS
Trigger: AGACACTGGATGTCCTGCTCAAGGCACTGCATCCCC...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
53% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCTCGGACACGAGGGGTaGTCTCATAGGATATCTCAG +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCLGHEG*SHRISQ
Trigger: CTGAGATATCCTATGAGATCACCCCTCGTGTCCGAG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGCTCGGACACGAGGGGTaGTCTCATAGGATATCTCAG +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGLGHEG*SHRISQ
Trigger: CTGAGATATCCTATGAGATCACCCCTCGTGTCCGAG...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGGGAAAACCAGGCCTCTaGGTGTACTCTTCCTCTACC +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGGKPGL*VYSSST
Trigger: GGTAGAGGAAGAGTACACTCAGAGGCCTGGTTTTCC...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTGGAAAACCAGGCCTCTaGGTGTACTCTTCCTCTACC +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCGKPGL*VYSSST
Trigger: GGTAGAGGAAGAGTACACTCAGAGGCCTGGTTTTCC...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGCTGCAAACTCTTCTaGGCTAGTGTACCCTCCACG +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGSCKLF*ASVPST
Trigger: CGTGGAGGGTACACTAGCTCAGAAGAGTTTGCAGCT...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACACAGGATGGATGTCACTaGTTACATCCTGGGAAGGTG +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTQDGCH*LHPGKV
Trigger: CACCTTCCCAGGATGTAAGCAGTGACATCCATCCTG...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGCAACTTGTCTTCTaGACCCATCAGCTCCGCATC +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGRQLVF*THQLRI
Trigger: GATGCGGAGCTGATGGGTGCAGAAGACAAGTTGCCT...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTAGGCAACTTGTCTTCTaGACCCATCAGCTCCGCATC +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPRQLVF*THQLRI
Trigger: GATGCGGAGCTGATGGGTGCAGAAGACAAGTTGCCT...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGCCAAAGCTGTTATCTTaGAAGACAGACTCCCCTAAG +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKPKLLS*KTDSPK
Trigger: CTTAGGGGAGTCTGTCTTGCAAGATAACAGCTTTGG...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCCAAAGCTGTTATCTTaGAAGACAGACTCCCCTAAG +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEPKLLS*KTDSPK
Trigger: CTTAGGGGAGTCTGTCTTGCAAGATAACAGCTTTGG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGCCCCGTTGGACCTTCTaGCTCATCTTCTTTTTGTTT +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKPRWTF*LIFFLF
Trigger: AAACAAAAAGAAGATGAGGCAGAAGGTCCAACGGGG...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCCCCGTTGGACCTTCTaGCTCATCTTCTTTTTGTTT +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEPRWTF*LIFFLF
Trigger: AAACAAAAAGAAGATGAGGCAGAAGGTCCAACGGGG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGGCCTGCTGCCTCTGCTaGTCCTCTAGCCGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKACCLC*SSSRFC
Trigger: ACAGAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGC...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGATAGCCTGCTGCCTCTaGTGCTCCTCTAGCCGCTTC +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLIACCL*CSSSRF
Trigger: GAAGCGGCTAGAGGAGCAGCAGAGGCAGCAGGCTAT...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGTCCAGGATAGCCTGCTaGCTCTGCTGCTCCTCTAGC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGSRIAC*LCCSSS
Trigger: GCTAGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGA...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGCAAAGCCTAGCACTTTaGCAAAACTGTGAAGGAACT +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEQSLAL*QNCEGT
Trigger: AGTTCCTTCACAGTTTTGGCAAAGTGCTAGGCTTTG...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTTGGCTCCACTCTATATaGCATGAGGAAGCAGCGCAG +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCWLHSI*HEEAAQ
Trigger: CTGCGCTGCTTCCTCATGGCATATAGAGTGGAGCCA...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCTGGCTCCACTCTATATaGCATGAGGAAGCAGCGCAG +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLWLHSI*HEEAAQ
Trigger: CTGCGCTGCTTCCTCATGGCATATAGAGTGGAGCCA...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGTGGAATGCTAGATGCTaGAACATCAATCTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEWNARC*NINLSF
Trigger: GAAGGAGAGATTGATGTTGCAGCATCTAGCATTCCA...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATTACCACCTCATGGGCTaGCCAGAGGGGCTCCCGCAA +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNYHLMG*PEGLPQ
Trigger: TTGCGGGAGCCCCTCTGGGCAGCCCATGAGGTGGTA...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCTACCACCTCATGGGCTaGCCAGAGGGGCTCCCGCAA +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTIYHLMG*PEGLPQ
Trigger: TTGCGGGAGCCCCTCTGGGCAGCCCATGAGGTGGTA...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCTACTCTTCCTCTACCTaGTGGGACAGACAGACAGCA +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLYSSST*WDRQTA
Trigger: TGCTGTCTGTCTGTCCCAGCAGGTAGAGGAAGAGTA...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACATACTCTTCCTCTACCTaGTGGGACAGACAGACAGCA +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTYSSST*WDRQTA
Trigger: TGCTGTCTGTCTGTCCCAGCAGGTAGAGGAAGAGTA...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTCTGAGAAAGAAGGGGTaGGTCCTTGAGGTTGTTGCC +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPLRKKG*VLEVVA
Trigger: GGCAACAACCTCAAGGACCCACCCCTTCTTTCTCAG...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGTTGGCCCAGAACTCTTaGCTCCCAGCTCGAAGATTA +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLELAQNS*LPARRL
Trigger: TAATCTTCGAGCTGGGAGCCAAGAGTTCTGGGCCAA...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGGAAGGTGCAAAGGTCTaGATACTAGACCCCAACATT +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKEGAKV*ILDPNI
Trigger: AATGTTGGGGTCTAGTATCCAGACCTTTGCACCTTC...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGTCACTGCTTACATCCTaGGAAGGTGCAAAGGTCTGG +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLESLLTS*EGAKVW
Trigger: CCAGACCTTTGCACCTTCCCAGGATGTAAGCAGTGA...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGCTAGACAGCTCACTGTaGGATCAGGGACCAGGACGG +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGLDSSL*DQGPGR
Trigger: CCGTCCTGGTCCCTGATCCCACAGTGAGCTGTCTAG...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCAGGCGAGGATGCTACTaGAGAGACAGCTGGAGAGAT +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLRRGCY*RDSWRD
Trigger: ATCTCTCCAGCTGTCTCTCCAGTAGCATCCTCGCCT...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGAAGACGAACTTCTTCTaGGGTAGCAATACGTCTCTT +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEKTNFF*GSNTSL
Trigger: AAGAGACGTATTGCTACCCCAGAAGAAGTTCGTCTT...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATTCCCCCTGCCACCGATaGCTGCCCTTCTTGATGCGC +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNSPCHR*LPFLMR
Trigger: GCGCATCAAGAAGGGCAGCCATCGGTGGCAGGGGGA...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCTCCCCCTGCCACCGATaGCTGCCCTTCTTGATGCGC +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTISPCHR*LPFLMR
Trigger: GCGCATCAAGAAGGGCAGCCATCGGTGGCAGGGGGA...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGCCACTGCAAGCCCTCTaGTGTATCTCTTTCTTCAAA +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKPLQAL*CISFFK
Trigger: TTTGAAGAAAGAGATACACCAGAGGGCTTGCAGTGG...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACACTGAGAAAGCCCTACTaGACAGTGTCAAACCAGGGA +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTLRKPY*TVSNQG
Trigger: TCCCTGGTTTGACACTGTCCAGTAGGGCTTTCTCAG...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGGAAGGAACTCCACGATaGTCAAGCAATCTGAGAAAG +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEEGTPR*SSNLRK
Trigger: CTTTCTCAGATTGCTTGACCATCGTGGAGTTCCTTC...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGCAGACACATTATCTCTaGTCAATGGGATCTCTGACA +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEQTHYL*SMGSLT
Trigger: TGTCAGAGATCCCATTGACCAGAGATAATGTGTCTG...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGGCCGCCCAGTTCGCTTaGCCAGAGCAGTTTTCAGTC +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLAAQFA*PEQFSV
Trigger: GACTGAAAACTGCTCTGGCCAAGCGAACTGGGCGGC...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCGACCCCTGCGGCCATaGACAGCTGTTGTATTTTCT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCRPLRP*TAVVFS
Trigger: AGAAAATACAACAGCTGTCCATGGCCGCAGGGGTCG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGCGACCCCTGCGGCCATaGACAGCTGTTGTATTTTCT +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGRPLRP*TAVVFS
Trigger: AGAAAATACAACAGCTGTCCATGGCCGCAGGGGTCG...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATGAGGAGGCCAGCAGCTaGAGGGAGGGAGTAGGTTGG +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNEEASS*REGVGW
Trigger: CCAACCTACTCCCTCCCTCCAGCTGCTGGCCTCCTC...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGTCTCCCCCTCCGCTTTaGTTGCCCCAGCCCAGTGGG +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMSPPPL*LPQPSG
Trigger: CCCACTGGGCTGGGGCAACCAAAGCGGAGGGGGAGA...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATTCCACTACCACCTCATaGGCTGCCCAGAGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNSTTTS*AAQRGS
Trigger: GGAGCCCCTCTGGGCAGCCCATGAGGTGGTAGTGGA...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGCATCAGGGGCACCATTaGGTGTGCTCAGTAGGGCCT +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGHQGHH*VCSVGP
Trigger: AGGCCCTACTGAGCACACCCAATGGTGCCCCTGATG...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTATGCACAAGCACACTTaGGCTGCACTACGGCACCTT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCMHKHT*AALRHL
Trigger: AAGGTGCCGTAGTGCAGCCCAAGTGTGCTTGTGCAT...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGATGCACAAGCACACTTaGGCTGCACTACGGCACCTT +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGMHKHT*AALRHL
Trigger: AAGGTGCCGTAGTGCAGCCCAAGTGTGCTTGTGCAT...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGAACCAATCTCCTTCTaGAACAGCCTCCATCTTGGG +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLEPISF*NSLHLG
Trigger: CCCAAGATGGAGGCTGTTCCAGAAGGAGATTGGTTC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGGAACCAATCTCCTTCTaGAACAGCCTCCATCTTGGG +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEEPISF*NSLHLG
Trigger: CCCAAGATGGAGGCTGTTCCAGAAGGAGATTGGTTC...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGTCTTCCTCTACCTGCTaGGACAGACAGACAGCACAG +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGSSSTC*DRQTAQ
Trigger: CTGTGCTGTCTGTCTGTCCCAGCAGGTAGAGGAAGA...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTTCTTCCTCTACCTGCTaGGACAGACAGACAGCACAG +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPSSSTC*DRQTAQ
Trigger: CTGTGCTGTCTGTCTGTCCCAGCAGGTAGAGGAAGA...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTTCTTCCTCTACCTGCTaGGACAGACAGACAGCACAG +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCSSSTC*DRQTAQ
Trigger: CTGTGCTGTCTGTCTGTCCCAGCAGGTAGAGGAAGA...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGTTCTGGGAAGGTCAGTaGAAAACTACTTTTCCGCTT +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEFWEGQ*KTTFPL
Trigger: AAGCGGAAAAGTAGTTTTCCACTGACCTTCCCAGAA...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCCGGCTGTCACCTTCTaGGAAGGTCAGTGGAAAACT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCPAVTF*EGQWKT
Trigger: AGTTTTCCACTGACCTTCCCAGAAGGTGACAGCCGG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCCGGCTGTCACCTTCTaGGAAGGTCAGTGGAAAACT +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLPAVTF*EGQWKT
Trigger: AGTTTTCCACTGACCTTCCCAGAAGGTGACAGCCGG...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCTGTCCCCCAGGGAACTaGGAAAGAAGGGGTGGGTCC +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTICPPGN*ERRGGS
Trigger: GGACCCACCCCTTCTTTCTCAGTTCCCTGGGGGACA...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACAGGAGTGTCTTCCAGTTaGTCAGGAAGATGTGAAGGA +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTGVSSS*SGRCEG
Trigger: TCCTTCACATCTTCCTGATCAACTGGAAGACACTCC...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCCAGGGAGTCTTCACTaGGAATTGGAGTGTCTTCCA +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCPGSLH*ELECLP
Trigger: TGGAAGACACTCCAATTCTCAGTGAAGACTCCCTGG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGGGGACGTTGGAAGTTTaGAGACTGGGTCTCTATTTC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEGTLEV*RLGLYF
Trigger: GAAATAGAGACCCAGTCTTCAAACTTCCAACGTCCC...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGGGACGTTGGAAGTTTaGAGACTGGGTCTCTATTTC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLGTLEV*RLGLYF
Trigger: GAAATAGAGACCCAGTCTTCAAACTTCCAACGTCCC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACAGGGACGTTGGAAGTTTaGAGACTGGGTCTCTATTTC +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTGTLEV*RLGLYF
Trigger: GAAATAGAGACCCAGTCTTCAAACTTCCAACGTCCC...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGGGTTCAGGGGAACCTTaGGGAGAAGTTACTGGAGTT +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGGSGEP*GEVTGV
Trigger: AACTCCAGTAACTTCTCCTCAAGGTTCCCCTGAACC...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGGATGGCTGCCCTTCTTaGTGCGCACTTCTCTTCGCC +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKDGCPS*CALLFA
Trigger: GGCGAAGAGAAGTGCGCATCAAGAAGGGCAGCCATC...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCCTTGGACAGGAGTCTaGCTTTCTCCCCGTTGGACC +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKPWTGV*LSPRWT
Trigger: GGTCCAACGGGGAGAAAGTCAGACTCCTGTCCAAGG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCAACCAGGGATGCGTGTaGAGTCAGGCAGGGGCTGGT +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTINQGCV*SQAGAG
Trigger: ACCAGCCCCTGCCTGACTTCACACGCATCCCTGGTT...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATAACCAGGGATGCGTGTaGAGTCAGGCAGGGGCTGGT +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNNQGCV*SQAGAG
Trigger: ACCAGCCCCTGCCTGACTTCACACGCATCCCTGGTT...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGGGTCAATGGGATCTCTaGCATCTTCTCCCCCAATAT +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEGQWDL*HLLPQY
Trigger: ATATTGGGGGAGAAGATGTCAGAGATCCCATTGACC...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGCCACTCTATATGCCATaGGGAAGCAGCGCAGTATCT +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGPLYMP*GSSAVS
Trigger: AGATACTGCGCTGCTTCCTCATGGCATATAGAGTGG...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCACTGGTTTCCTCCATaGTCCGAGAACTGCGCCTCC +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKHWFPP*SENCAS
Trigger: GGAGGCGCAGTTCTCGGATCATGGAGGAAACCAGTG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGCCCAGTGGGACTCTGTaGCATTTCTTCAGAGTCCCC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGPSGTL*HFFRVP
Trigger: GGGGACTCTGAAGAAATGTCACAGAGTCCCACTGGG...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTTTGCTAAGATGTTTGTaGAGCGCCTTCTCCCGGATG +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCLLRCL*SAFSRM
Trigger: CATCCGGGAGAAGGCGCTTCACAAACATCTTAGCAA...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTTTGCTAAGATGTTTGTaGAGCGCCTTCTCCCGGATG +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPLLRCL*SAFSRM
Trigger: CATCCGGGAGAAGGCGCTTCACAAACATCTTAGCAA...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGTTGCTAAGATGTTTGTaGAGCGCCTTCTCCCGGATG +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGLLRCL*SAFSRM
Trigger: CATCCGGGAGAAGGCGCTTCACAAACATCTTAGCAA...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCAGGATGGATGTCACTaGTTACATCCTGGGAAGGTG +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLQDGCH*LHPGKV
Trigger: CACCTTCCCAGGATGTAAGCAGTGACATCCATCCTG...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGCAGCTCCTTTTCTGCTaGTTCATCAGGATGGATGTC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEQLLFC*FIRMDV
Trigger: GACATCCATCCTGATGAAGCAGCAGAAAAGGAGCTG...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCTGCCTACCAAGCCAGTaGCATTTTCTGCCACAACTG +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLCLPSQ*HFLPQL
Trigger: CAGTTGTGGCAGAAAATGGCACTGGCTTGGTAGGCA...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTTGCCTACCAAGCCAGTaGCATTTTCTGCCACAACTG +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCCLPSQ*HFLPQL
Trigger: CAGTTGTGGCAGAAAATGGCACTGGCTTGGTAGGCA...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCATCTTTAGTTCTGGCTaGTCTTCCTCCAGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLIFSSG*SSSSSR
Trigger: CCTGGAGCTGGAGGAAGAGCAGCCAGAACTAAAGAT...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGATCTTTAGTTCTGGCTaGTCTTCCTCCAGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGIFSSG*SSSSSR
Trigger: CCTGGAGCTGGAGGAAGAGCAGCCAGAACTAAAGAT...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGACTCACTGGCTCTGCTaGCAGAGAGTCAAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGTHWLC*QRVKGL
Trigger: GAGCCCTTTGACTCTCTGGCAGCAGAGCCAGTGAGT...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045621.9
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGCCTGTTCAGAGTCACTaGAACTGTTCAGTCCAAAGC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEPVQSH*NCSVQS
Trigger: GCTTTGGACTGAACAGTTGCAGTGACTCTGAACAGG...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGAGATTTCTGCAGATaGTGTCAAGGAGGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGRDFCR*CQGGCW
Trigger: CCAGCAGCCTCCTTGACAGCATCTGCAGAAATCTCT...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGAGTCTGGAAGGCAGCTaGTGGAGAAGGTTCAGGGGA +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGSLEGS*WRRFRG
Trigger: TCCCCTGAACCTTCTCCAGCAGCTGCCTTCCAGACT...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATTACCAAGTCTCCCCCTaGCACCGATGGCTGCCCTTC +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNYQVSP*HRWLPF
Trigger: GAAGGGCAGCCATCGGTGGCAGGGGGAGACTTGGTA...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCAAGCTCTTGGTGTCTTaGTTCCTCTTGTTTCTGGCC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLKLLVS*FLLFLA
Trigger: GGCCAGAAACAAGAGGAAGCAAGACACCAAGAGCTT...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGTCCTTCAGCTTTTCCTaGTTTGTCTTCATCTTCTCT +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWESFSFS*FVFIFS
Trigger: AGAGAAGATGAAGACAAAGCAGGAAAAGCTGAAGGA...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCCAGGATAGCCTGCTaGCTCTGCTGCTCCTCTAGC +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKSRIAC*LCCSSS
Trigger: GCTAGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGA...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCCTCCAGGATAGCCTaGTGCCTCTGCTGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKSSRIA*CLCCSS
Trigger: AGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGAGGA...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGCGCACCAGCAGGTCCTaGACTTTGTCCAAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGRTSRS*TLSKLS
Trigger: TGACAGCTTGGACAAAGTGCAGGACCTGCTGGTGCG...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCGCCTCGGGGATGCAGTaGCTTGAGCAGGACATCCAG +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTIASGMQ*LEQDIQ
Trigger: CTGGATGTCCTGCTCAAGGCACTGCATCCCCGAGGC...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGTACCACCTCATGGGCTaGCCAGAGGGGCTCCCGCAA +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMYHLMG*PEGLPQ
Trigger: TTGCGGGAGCCCCTCTGGGCAGCCCATGAGGTGGTA...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCTACTCTTCCTCTACCTaGTGGGACAGACAGACAGCA +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLYSSST*WDRQTA
Trigger: TGCTGTCTGTCTGTCCCAGCAGGTAGAGGAAGAGTA...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGACTCACTGGCTCTGCTaGTGCCAGAGAGTCAAAGGG +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGTHWLC*CQRVKG
Trigger: CCCTTTGACTCTCTGGCAGCAGCAGAGCCAGTGAGT...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170054.9
ENSMUST00000217851.2
CDS-3UTR GCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGGCCACTCACTGGCTCTaGTGCTGCCAGAGAGTCAAA +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLATHWL*CCQRVK
Trigger: TTTGACTCTCTGGCAGCAGCAGAGCCAGTGAGTGGC...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170054.9
ENSMUST00000217851.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTGGTTGTTGCCAGGATTaGCAGATGGGTACTGTGAGT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCGCCQD*QMGTVS
Trigger: ACTCACAGTACCCATCTGCCAATCCTGGCAACAACC...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGTTGGCCCAGAACTCTTaGCTCCCAGCTCGAAGATTA +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGLAQNS*LPARRL
Trigger: TAATCTTCGAGCTGGGAGCCAAGAGTTCTGGGCCAA...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTTTGGCCCAGAACTCTTaGCTCCCAGCTCGAAGATTA +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPLAQNS*LPARRL
Trigger: TAATCTTCGAGCTGGGAGCCAAGAGTTCTGGGCCAA...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCTCACTGCTTACATCCTaGGAAGGTGCAAAGGTCTGG +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLSLLTS*EGAKVW
Trigger: CCAGACCTTTGCACCTTCCCAGGATGTAAGCAGTGA...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCTAGACAGCTCACTGTaGGATCAGGGACCAGGACGG +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKLDSSL*DQGPGR
Trigger: CCGTCCTGGTCCCTGATCCCACAGTGAGCTGTCTAG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGGTCTTCACTGAGAATTaGAGTGTCTTCCAGTTGATC +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEVFTEN*SVFQLI
Trigger: GATCAACTGGAAGACACTCCAATTCTCAGTGAAGAC...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTTCAGTCAGGGGACGTTaGAAGTTTGAAGACTGGGTC +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCSVRGR*KFEDWV
Trigger: GACCCAGTCTTCAAACTTCCAACGTCCCCTGACTGA...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGTCAGTCAGGGGACGTTaGAAGTTTGAAGACTGGGTC +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGSVRGR*KFEDWV
Trigger: GACCCAGTCTTCAAACTTCCAACGTCCCCTGACTGA...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGTACTGGAGAGACAGCTaGAGAGATTTCTGCAGATGC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEYWRDS*RDFCRC
Trigger: GCATCTGCAGAAATCTCTCCAGCTGTCTCTCCAGTA...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGGACATTTTTCCTTGCTaGGGAGACAGTCTGGAAGGC +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGDIFPC*GDSLEG
Trigger: GCCTTCCAGACTGTCTCCCCAGCAAGGAAAAATGTC...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTGACATTTTTCCTTGCTaGGGAGACAGTCTGGAAGGC +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCDIFPC*GDSLEG
Trigger: GCCTTCCAGACTGTCTCCCCAGCAAGGAAAAATGTC...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGGCTTCCTCTTGTTTCTaGCCTGCCCTTGGACAGGAG +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLASSCF*PALGQE
Trigger: CTCCTGTCCAAGGGCAGGCCAGAAACAAGAGGAAGC...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGAGGATGGCCTGGCTCTaGGCCCTTCCTTCCCCTTCG +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMRMAWL*ALPSPS
Trigger: CGAAGGGGAAGGAAGGGCCCAGAGCCAGGCCATCCT...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAAGGATGGCCTGGCTCTaGGCCCTTCCTTCCCCTTCG +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFERMAWL*ALPSPS
Trigger: CGAAGGGGAAGGAAGGGCCCAGAGCCAGGCCATCCT...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCCTCTACAGGATGGCCTaGCTCTGGGCCCTTCCTTCC +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTILYRMA*LWALPS
Trigger: GGAAGGAAGGGCCCAGAGCCAGGCCATCCTGTAGAG...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGCTGAGAAAGCCCTACTaGACAGTGTCAAACCAGGGA +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGLRKPY*TVSNQG
Trigger: TCCCTGGTTTGACACTGTCCAGTAGGGCTTTCTCAG...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGGGCAGACCAGGATCATaGAGTGCAGCCTTCAGCAGT +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLGRPGS*SAAFSS
Trigger: ACTGCTGAAGGCTGCACTCCATGATCCTGGTCTGCC...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGCAGACACATTATCTCTaGTCAATGGGATCTCTGACA +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEQTHYL*SMGSLT
Trigger: TGTCAGAGATCCCATTGACCAGAGATAATGTGTCTG...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGAGCCTTCTGTTGAGGTaGCTGGGCCTGAAAAGGCTG +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGSLLLR*LGLKRL
Trigger: CAGCCTTTTCAGGCCCAGCCACCTCAACAGAAGGCT...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGCTGAGTTTTTCTATATaGCGCTCTAGCTCTGGAATG +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKLSFSI*RSSSGM
Trigger: CATTCCAGAGCTAGAGCGCCATATAGAAAAACTCAG...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGGGAAGAGAGCTGCACTaGGGAACAAGGATTGGCAGC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGGRELH*GTRIGS
Trigger: GCTGCCAATCCTTGTTCCCCAGTGCAGCTCTCTTCC...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCAGACAGCCCGTCTTCTaGGTACCGAGGCACTGCTGG +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTIRQPVF*VPRHCW
Trigger: CCAGCAGTGCCTCGGTACCCAGAAGACGGGCTGTCT...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAAGAGGGTTTCAGTCCTaGGGCAGCTGGTGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFERGFQS*GSWCRR
Trigger: CCTCCTGCACCAGCTGCCTCAGGACTGAAACCCTCT...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGTGTCCCCCAGGGAACTaGGAAAGAAGGGGTGGGTCC +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMCPPGN*ERRGGS
Trigger: GGACCCACCCCTTCTTTCTCAGTTCCCTGGGGGACA...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCGTTGTGACTTGGGGATaGAGGTTGTCGGTTGCCCCC +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTIVVTWG*RLSVAP
Trigger: GGGGGCAACCGACAACCTTCATCCCCAAGTCACAAC...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGACTTTGCCAAAACTGTaGAGGAACTCCACGATGGTC +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGTLPKL*RNSTMV
Trigger: GACCATCGTGGAGTTCCTTCACAGTTTTGGCAAAGT...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCACTTTGCCAAAACTGTaGAGGAACTCCACGATGGTC +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLTLPKL*RNSTMV
Trigger: GACCATCGTGGAGTTCCTTCACAGTTTTGGCAAAGT...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTGGTCAATGGGATCTCTaGCATCTTCTCCCCCAATAT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCGQWDL*HLLPQY
Trigger: ATATTGGGGGAGAAGATGTCAGAGATCCCATTGACC...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCAGGGAGTTGTGGCTCTaGGTCTGGCTCAGCCAAGAC +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTIRELWL*VWLSQD
Trigger: GTCTTGGCTGAGCCAGACTCAGAGCCACAACTCCCT...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATGTCCCTCCAGGCAAGTaGGTGGAAGAGAGCTGCACT +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNVPPGK*VEESCT
Trigger: AGTGCAGCTCTCTTCCACTCACTTGCCTGGAGGGAC...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCCCAGTGGGACTCTGTaGCATTTCTTCAGAGTCCCC +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKPSGTL*HFFRVP
Trigger: GGGGACTCTGAAGAAATGTCACAGAGTCCCACTGGG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCGGGGATGCAGTGCCTTaGGCAGGACATCCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTIGDAVP*AGHPVS
Trigger: AGACACTGGATGTCCTGCTCAAGGCACTGCATCCCC...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGGGCAGGTCACTTTGTTaGCAGACTTCTCCCACGCGA +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKGRSLC*QTSPTR
Trigger: TCGCGTGGGAGAAGTCTGTCAACAAAGTGACCTGCC...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAACAAAGAAGCGTCGCATaGCGTGCCCAGCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFEQRSVA*RAQPCP
Trigger: TGGGCAAGGCTGGGCACGTCATGCGACGCTTCTTTG...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGTTCAAACTTTTCCCTTaGTGGGGGAAGTTCATGGGA +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEFKLFP*WGKFMG
Trigger: TCCCATGAACTTCCCCCAGCAAGGGAAAAGTTTGAA...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTCAGCTCCTTTTCTGCTaGTTCATCAGGATGGATGTC +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPQLLFC*FIRMDV
Trigger: GACATCCATCCTGATGAAGCAGCAGAAAAGGAGCTG...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCAGCTCCTTTTCTGCTaGTTCATCAGGATGGATGTC +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCQLLFC*FIRMDV
Trigger: GACATCCATCCTGATGAAGCAGCAGAAAAGGAGCTG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGCCTCCAGCTCCAGGCTaGCTACCAAGCCAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMPPAPG*LPSQCH
Trigger: ATGGCACTGGCTTGGTAGGCAGCCTGGAGCTGGAGG...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCTATACCATAAAGACTaGCACTCACTGGCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCLYHKD*HSLALL
Trigger: CAGCAGAGCCAGTGAGTGGCAGTCTTTATGGTATAG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCCCAAAGCTGTTATCTTaGAAGACAGACTCCCCTAAG +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLPKLLS*KTDSPK
Trigger: CTTAGGGGAGTCTGTCTTGCAAGATAACAGCTTTGG...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCCTGTTCAGAGTCACTaGAACTGTTCAGTCCAAAGC +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCPVQSH*NCSVQS
Trigger: GCTTTGGACTGAACAGTTGCAGTGACTCTGAACAGG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGGCTGACATTTTTCCTTaGTGGGGAGACAGTCTGGAA +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGADIFP*WGDSLE
Trigger: TTCCAGACTGTCTCCCCAGCAAGGAAAAATGTCAGC...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTGCTGACATTTTTCCTTaGTGGGGAGACAGTCTGGAA +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPADIFP*WGDSLE
Trigger: TTCCAGACTGTCTCCCCAGCAAGGAAAAATGTCAGC...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGACCAGAGACTGCAACTaGTCCTCCAGTCGTCTCTTC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGTRDCN*SSSRLF
Trigger: GAAGAGACGACTGGAGGAGCAGTTGCAGTCTCTGGT...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGTACCAAGTCTCCCCCTaGCACCGATGGCTGCCCTTC +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMYQVSP*HRWLPF
Trigger: GAAGGGCAGCCATCGGTGGCAGGGGGAGACTTGGTA...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCTCACGGCGGACACTGTaGACCACATTTCGGCTCAGG +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTISRRTL*TTFRLR
Trigger: CCTGAGCCGAAATGTGGTGCACAGTGTCCGCCGTGA...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACATGGAAGCAGCATGTTCAGGGCCCGGTGTCCGGCTCGACACACTTGGGAGGTTTTTAGTCATCTTTaGTTTATCGTCCTCACTCAG +
Preference number: 4 (lower is better)
Translates to: EHGSSMFRARCPARHTWEVFSHL*FIVLTQ
Trigger: CTGAGTGAGGACGATAAAGCAAAGATGACTAAAAAC...CTCCCAAGTGTGTCGAGCCGGACACCGGGCCCTGAACATGCTGCTTCCATGTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTAAGCTCTTGGTGTCTTaGTTCCTCTTGTTTCTGGCC +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPKLLVS*FLLFLA
Trigger: GGCCAGAAACAAGAGGAAGCAAGACACCAAGAGCTT...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCAAACTTTTCCCTTGCTaGGGGAAGTTCATGGGAGAC +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLKLFPC*GKFMGD
Trigger: GTCTCCCATGAACTTCCCCCAGCAAGGGAAAAGTTT...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATAGCCCCATGGGACTCTaGGTACCATTGGCCCAGAAC +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNSPMGL*VPLAQN
Trigger: GTTCTGGGCCAATGGTACCCAGAGTCCCATGGGGCT...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCAGCCCCATGGGACTCTaGGTACCATTGGCCCAGAAC +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTISPMGL*VPLAQN
Trigger: GTTCTGGGCCAATGGTACCCAGAGTCCCATGGGGCT...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTAGGACGGAGACTTCTTaGTGTAAAGACTCCACAGAG +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCRTETS*CKDSTE
Trigger: CTCTGTGGAGTCTTTACACCAAGAAGTCTCCGTCCT...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATCTAGACAGCTCACTGTaGGATCAGGGACCAGGACGG +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNLDSSL*DQGPGR
Trigger: CCGTCCTGGTCCCTGATCCCACAGTGAGCTGTCTAG...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGAGGCTTCCAAAGAGATaGCTGGCAGAGCAGGTGAGG +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKRLPKR*LAEQVR
Trigger: CCTCACCTGCTCTGCCAGCCATCTCTTTGGAAGCCT...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGCCACTGCAAGCCCTCTaGTGTATCTCTTTCTTCAAA +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEPLQAL*CISFFK
Trigger: TTTGAAGAAAGAGATACACCAGAGGGCTTGCAGTGG...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCCCACTGCAAGCCCTCTaGTGTATCTCTTTCTTCAAA +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLPLQAL*CISFFK
Trigger: TTTGAAGAAAGAGATACACCAGAGGGCTTGCAGTGG...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGTCCTCTGCTGATAACTaGACCCACTGCAAGCCCTCT +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLSSADN*THCKPS
Trigger: AGAGGGCTTGCAGTGGGTCCAGTTATCAGCAGAGGA...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCTCTGCTTCAAGCTCTTaGTGTCTTGCTTCCTCTTGT +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLSASSS*CLASSC
Trigger: ACAAGAGGAAGCAAGACACCAAGAGCTTGAAGCAGA...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGCTCTACAGGATGGCCTaGCTCTGGGCCCTTCCTTCC +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMLYRMA*LWALPS
Trigger: GGAAGGAAGGGCCCAGAGCCAGGCCATCCTGTAGAG...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCTAGCCGCTTCTGTGTaGCAAGGGTCTTGTCTGCTC +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKLAASV*QGSCLL
Trigger: GAGCAGACAAGACCCTTGCCACACAGAAGCGGCTAG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGAAGTCAGGCAGGGGCTaGTGGTCAGACAGACACATA +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGKSGRG*WSDRHI
Trigger: TATGTGTCTGTCTGACCACCAGCCCCTGCCTGACTT...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGAAGGAACTCCACGATaGTCAAGCAATCTGAGAAAG +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLEGTPR*SSNLRK
Trigger: CTTTCTCAGATTGCTTGACCATCGTGGAGTTCCTTC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGCGACCCCTGCGGCCATaGACAGCTGTTGTATTTTCT +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGRPLRP*TAVVFS
Trigger: AGAAAATACAACAGCTGTCCATGGCCGCAGGGGTCG...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGAGAGACTGCAGGAGGTaGTGTAGGAGCAGCATCACA +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLRDCRR*CRSSIT
Trigger: TGTGATGCTGCTCCTACACCACCTCCTGCAGTCTCT...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATAGCTCCTCCACCCACTaGAGCACAGCTAGGTCTGTC +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNSSSTH*STARSV
Trigger: GACAGACCTAGCTGTGCTCCAGTGGGTGGAGGAGCT...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTGAACAGCCTCCATCTTaGGCCGATGACAGTAAATGT +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPEQPPS*ADDSKC
Trigger: ACATTTACTGTCATCGGCCCAAGATGGAGGCTGTTC...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGCCGGCTGTCACCTTCTaGGAAGGTCAGTGGAAAACT +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLPAVTF*EGQWKT
Trigger: AGTTTTCCACTGACCTTCCCAGAAGGTGACAGCCGG...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAAGACAGCCCGTCTTCTaGGTACCGAGGCACTGCTGG +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFERQPVF*VPRHCW
Trigger: CCAGCAGTGCCTCGGTACCCAGAAGACGGGCTGTCT...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCTCCTCATTGAAGGTCTaGCAGTTGTCAAAAACCAGC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLSSLKV*QLSKTS
Trigger: GCTGGTTTTTGACAACTGCCAGACCTTCAATGAGGA...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGGGCAGATGGGTACTGTaGGTAGTTCCAAAGACAGTC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGGRWVL*VVPKTV
Trigger: GACTGTCTTTGGAACTACTCACAGTACCCATCTGCC...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGTTGTGACTTGGGGATaGAGGTTGTCGGTTGCCCCC +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFEVVTWG*RLSVAP
Trigger: GGGGGCAACCGACAACCTTCATCCCCAAGTCACAAC...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTCGAAGATTAGTGTTGTaGCTTGGGGATGAAGGTTGT +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPRRLVL*LGDEGC
Trigger: ACAACCTTCATCCCCAAGTCACAACACTAATCTTCG...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCATCATACAGTTCCTGTaGATCGAAGTTAAGCCCCAT +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLIIQFL*IEVKPH
Trigger: ATGGGGCTTAACTTCGATTCACAGGAACTGTATGAT...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATGACAAAGATGGAGGCTaGTGTCTGGCTGTCGTCTGC +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNDKDGG*CLAVVC
Trigger: GCAGACGACAGCCAGACATCAGCCTCCATCTTTGTC...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGGATGGCTGCCCTTCTTaGTGCGCACTTCTCTTCGCC +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMDGCPS*CALLFA
Trigger: GGCGAAGAGAAGTGCGCATCAAGAAGGGCAGCCATC...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGATGGCTGCCCTTCTTaGTGCGCACTTCTCTTCGCC +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFEDGCPS*CALLFA
Trigger: GGCGAAGAGAAGTGCGCATCAAGAAGGGCAGCCATC...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGGGCCTCGTTTGCCAGTaGTTGCTTGAATTCTGGAAG +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGGLVCQ*LLEFWK
Trigger: CTTCCAGAATTCAAGCAATCACTGGCAAACGAGGCC...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGCCTTGGACAGGAGTCTaGCTTTCTCCCCGTTGGACC +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMPWTGV*LSPRWT
Trigger: GGTCCAACGGGGAGAAAGTCAGACTCCTGTCCAAGG...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGCCACTCTATATGCCATaGGGAAGCAGCGCAGTATCT +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLPLYMP*GSSAVS
Trigger: AGATACTGCGCTGCTTCCTCATGGCATATAGAGTGG...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGAGAAGGCAGACTGGCTaGGGTCATGCTGGCTCTGAC +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMRRQTG*GHAGSD
Trigger: GTCAGAGCCAGCATGACCTCAGCCAGTCTGCCTTCT...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAAGGGAGTTGTGGCTCTaGGTCTGGCTCAGCCAAGAC +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFERELWL*VWLSQD
Trigger: GTCTTGGCTGAGCCAGACTCAGAGCCACAACTCCCT...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATCCCAGTGGGACTCTGTaGCATTTCTTCAGAGTCCCC +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNPSGTL*HFFRVP
Trigger: GGGGACTCTGAAGAAATGTCACAGAGTCCCACTGGG...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGGGGGATGCAGTGCCTTaGGCAGGACATCCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMGDAVP*AGHPVS
Trigger: AGACACTGGATGTCCTGCTCAAGGCACTGCATCCCC...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTTTCAAACTTTTCCCTTaGTGGGGGAAGTTCATGGGA +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPFKLFP*WGKFMG
Trigger: TCCCATGAACTTCCCCCAGCAAGGGAAAAGTTTGAA...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTAGTCAGCTCCTTTTCTaGTGCTTCATCAGGATGGAT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCSQLLF*CFIRMD
Trigger: ATCCATCCTGATGAAGCAGCAGAAAAGGAGCTGACT...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCAGTCAGCTCCTTTTCTaGTGCTTCATCAGGATGGAT +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLSQLLF*CFIRMD
Trigger: ATCCATCCTGATGAAGCAGCAGAAAAGGAGCTGACT...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCAGAGATCACAGGGTTaGCCTCCAGAGGCAACTTGT +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKQRSQG*PPEATC
Trigger: ACAAGTTGCCTCTGGAGGGCAACCCTGTGATCTCTG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATAGTCTGGAAGGCAGCTaGTGGAGAAGGTTCAGGGGA +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNSLEGS*WRRFRG
Trigger: TCCCCTGAACCTTCTCCAGCAGCTGCCTTCCAGACT...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGACCAGAGACTGCAACTaGTCCTCCAGTCGTCTCTTC +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKTRDCN*SSSRLF
Trigger: GAAGAGACGACTGGAGGAGCAGTTGCAGTCTCTGGT...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAATCACGGCGGACACTGTaGACCACATTTCGGCTCAGG +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFESRRTL*TTFRLR
Trigger: CCTGAGCCGAAATGTGGTGCACAGTGTCCGCCGTGA...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGGTTTTTAGTCATCTTTaGTTTATCGTCCTCACTCAG +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAEVFSHL*FIVLTQ
Trigger: CTGAGTGAGGACGATAAAGCAAAGATGACTAAAAAC...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCTTCTTAGTGTCCTTCTaGTTCAAGCTCTTGGTGTCT +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLFLVSF*FKLLVS
Trigger: AGACACCAAGAGCTTGAAGCAGAAGGACACTAAGAA...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAATCCAGGATAGCCTGCTaGCTCTGCTGCTCCTCTAGC +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFESRIAC*LCCSSS
Trigger: GCTAGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGA...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGTCCTCCAGGATAGCCTaGTGCCTCTGCTGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMSSRIA*CLCCSS
Trigger: AGAGGAGCAGCAGAGGCAGCAGGCTATCCTGGAGGA...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGCAAAGCCTAGCACTTTaGCAAAACTGTGAAGGAACT +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEQSLAL*QNCEGT
Trigger: AGTTCCTTCACAGTTTTGGCAAAGTGCTAGGCTTTG...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCCGCACCAGCAGGTCCTaGACTTTGTCCAAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTIRTSRS*TLSKLS
Trigger: TGACAGCTTGGACAAAGTGCAGGACCTGCTGGTGCG...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCACCAGGATCATGGAGTaGAGCCTTCAGCAGTCGCAC +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTITRIME*SLQQSH
Trigger: GTGCGACTGCTGAAGGCTGCACTCCATGATCCTGGT...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGAGCTGTTAAGCTCATaGACAAGGAAGGCTAGAATA +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLELLSS*TRKARI
Trigger: TATTCTAGCCTTCCTTGTGCATGAGCTTAACAGCTC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCCTTCTTTTCGACCCCTaGGGCCATGGACAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTILLFDP*GHGQLL
Trigger: CAACAGCTGTCCATGGCCGCAGGGGTCGAAAAGAAG...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CAGAGAACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAAGAGAGGACAACCCGCTaGTCCAGCTCCTCCACCCAC +
Preference number: 4 (lower is better)
Translates to: QRTLVLVFSQRQKVDGVKERTTR*SSSSTH
Trigger: GTGGGTGGAGGAGCTGGAGCAGCGGGTTGTCCTCTC...TTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGTTCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGTACTCTTCCTCTACCTaGTGGGACAGACAGACAGCA +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGYSSST*WDRQTA
Trigger: TGCTGTCTGTCTGTCCCAGCAGGTAGAGGAAGAGTA...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGAAGCGTCGCATGACGTaGCCAGCCTTGCCCACTTCA +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMKRRMT*PALPTS
Trigger: TGAAGTGGGCAAGGCTGGGCACGTCATGCGACGCTT...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCACTCACTGGCTCTGCTaGTGCCAGAGAGTCAAAGGG +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTITHWLC*CQRVKG
Trigger: CCCTTTGACTCTCTGGCAGCAGCAGAGCCAGTGAGT...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000170054.9
ENSMUST00000217851.2
CDS-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCTGAGAAAGAAGGGGTaGGTCCTTGAGGTTGTTGCC +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKLRKKG*VLEVVA
Trigger: GGCAACAACCTCAAGGACCCACCCCTTCTTTCTCAG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGACTAGACCCCAACATTaGAGAAGTCTGAGGGGAGGT +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLTRPQH*RSLRGG
Trigger: ACCTCCCCTCAGACTTCTCCAATGTTGGGGTCTAGT...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTGAAGGTGCAAAGGTCTaGATACTAGACCCCAACATT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCEGAKV*ILDPNI
Trigger: AATGTTGGGGTCTAGTATCCAGACCTTTGCACCTTC...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGTCACTGCTTACATCCTaGGAAGGTGCAAAGGTCTGG +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLSLLTS*EGAKVW
Trigger: CCAGACCTTTGCACCTTCCCAGGATGTAAGCAGTGA...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGGTCTTCACTGAGAATTaGAGTGTCTTCCAGTTGATC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEVFTEN*SVFQLI
Trigger: GATCAACTGGAAGACACTCCAATTCTCAGTGAAGAC...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCGTCTTCACTGAGAATTaGAGTGTCTTCCAGTTGATC +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLVFTEN*SVFQLI
Trigger: GATCAACTGGAAGACACTCCAATTCTCAGTGAAGAC...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGTCAGTCAGGGGACGTTaGAAGTTTGAAGACTGGGTC +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLSVRGR*KFEDWV
Trigger: GACCCAGTCTTCAAACTTCCAACGTCCCCTGACTGA...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGAGGCGAGGATGCTACTaGAGAGACAGCTGGAGAGAT +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKRRGCY*RDSWRD
Trigger: ATCTCTCCAGCTGTCTCTCCAGTAGCATCCTCGCCT...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACATTGAGGAGAAGTTACTaGAGTTGTCATAGAGGCTTC +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTLRRSY*SCHRGF
Trigger: GAAGCCTCTATGACAACTCCAGTAACTTCTCCTCAA...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGGACATTTTTCCTTGCTaGGGAGACAGTCTGGAAGGC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGDIFPC*GDSLEG
Trigger: GCCTTCCAGACTGTCTCCCCAGCAAGGAAAAATGTC...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTCCACTGCAAGCCCTCTaGTGTATCTCTTTCTTCAAA +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCPLQAL*CISFFK
Trigger: TTTGAAGAAAGAGATACACCAGAGGGCTTGCAGTGG...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp AGGGCTGCCCAGGAACCCGCACTGCCCCACTCTTTAGTACTGCTGGAGTACAAGTCACTCAGTATTTCTTaGGTTTCCAGTTTCTTTGGA +
Preference number: 4 (lower is better)
Translates to: RAAQEPALPHSLVLLEYKSLSIS*VSSFFG
Trigger: TCCAAAGAAACTGGAAACCCAAGAAATACTGAGTGA...CTTGTACTCCAGCAGTACTAAAGAGTGGGGCAGTGCGGGTTCCTGGGCAGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGAGGGGCTTGGCTGAGTCACTCAGTATTTCTTaGGTTTCCAGTTTCTTTGGA +
Preference number: 4 (lower is better)
Translates to: ATSPVQVPVISDGRGLAESLSIS*VSSFFG
Trigger: TCCAAAGAAACTGGAAACCCAAGAAATACTGAGTGA...CTCAGCCAAGCCCCTCCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATGCTTCCTCTTGTTTCTaGCCTGCCCTTGGACAGGAG +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNASSCF*PALGQE
Trigger: CTCCTGTCCAAGGGCAGGCCAGAAACAAGAGGAAGC...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATGGCAGACCAGGATCATaGAGTGCAGCCTTCAGCAGT +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNGRPGS*SAAFSS
Trigger: ACTGCTGAAGGCTGCACTCCATGATCCTGGTCTGCC...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGCAGACACATTATCTCTaGTCAATGGGATCTCTGACA +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLEQTHYL*SMGSLT
Trigger: TGTCAGAGATCCCATTGACCAGAGATAATGTGTCTG...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGCCGCCCAGTTCGCTTaGCCAGAGCAGTTTTCAGTC +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFEAAQFA*PEQFSV
Trigger: GACTGAAAACTGCTCTGGCCAAGCGAACTGGGCGGC...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGGCCGCCCAGTTCGCTTaGCCAGAGCAGTTTTCAGTC +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMAAQFA*PEQFSV
Trigger: GACTGAAAACTGCTCTGGCCAAGCGAACTGGGCGGC...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACACTGAGTTTTTCTATATaGCGCTCTAGCTCTGGAATG +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTLSFSI*RSSSGM
Trigger: CATTCCAGAGCTAGAGCGCCATATAGAAAAACTCAG...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCGACAAGAAGGCAGACTaGCTGAGGTCATGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTIDKKAD*LRSCWL
Trigger: GAGCCAGCATGACCTCAGCCAGTCTGCCTTCTTGTC...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGATGCACAAGCACACTTaGGCTGCACTACGGCACCTT +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKMHKHT*AALRHL
Trigger: AAGGTGCCGTAGTGCAGCCCAAGTGTGCTTGTGCAT...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGATGGACCTTTCTAGCTaGCCCATGCACAAGCACACT +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLMDLSS*PMHKHT
Trigger: AGTGTGCTTGTGCATGGGCCAGCTAGAAAGGTCCAT...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTTCCTCATTGAAGGTCTaGCAGTTGTCAAAAACCAGC +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPSSLKV*QLSKTS
Trigger: GCTGGTTTTTGACAACTGCCAGACCTTCAATGAGGA...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGAGAGTTCAAAATCCCTaGAGTAGTAGTGTGAGATAC +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLERVQNP*SSSVRY
Trigger: GTATCTCACACTACTACTTCAGGGATTTTGAACTCT...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGGGAGTGTCTTCCAGTTaGTCAGGAAGATGTGAAGGA +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGGVSSS*SGRCEG
Trigger: TCCTTCACATCTTCCTGATCAACTGGAAGACACTCC...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCCAGGGAGTCTTCACTaGGAATTGGAGTGTCTTCCA +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKPGSLH*ELECLP
Trigger: TGGAAGACACTCCAATTCTCAGTGAAGACTCCCTGG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGGGCCTCGTTTGCCAGTaGTTGCTTGAATTCTGGAAG +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKGLVCQ*LLEFWK
Trigger: CTTCCAGAATTCAAGCAATCACTGGCAAACGAGGCC...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp ACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACAATGGAACCAGGGATGCGTGTaGAGTCAGGCAGGGGCTGGT +
Preference number: 4 (lower is better)
Translates to: TLVLVFSQRQKVDGVKQWNQGCV*SQAGAG
Trigger: ACCAGCCCCTGCCTGACTTCACACGCATCCCTGGTT...CCATTGTTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGACTTTGCCAAAACTGTaGAGGAACTCCACGATGGTC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGTLPKL*RNSTMV
Trigger: GACCATCGTGGAGTTCCTTCACAGTTTTGGCAAAGT...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGGGTCAATGGGATCTCTaGCATCTTCTCCCCCAATAT +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLGQWDL*HLLPQY
Trigger: ATATTGGGGGAGAAGATGTCAGAGATCCCATTGACC...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCCACTCTATATGCCATaGGGAAGCAGCGCAGTATCT +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKPLYMP*GSSAVS
Trigger: AGATACTGCGCTGCTTCCTCATGGCATATAGAGTGG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp ACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACAATGGGTCCGGCGTGAGGACTaGGCTGCTCAACAGGGAGTT +
Preference number: 4 (lower is better)
Translates to: TLVLVFSQRQKVDGVKQWVRRED*AAQQGV
Trigger: AACTCCCTGTTGAGCAGCTCAGTCCTCACGCCGGAC...CCATTGTTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTTGCTAAGATGTTTGTaGAGCGCCTTCTCCCGGATG +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKLLRCL*SAFSRM
Trigger: CATCCGGGAGAAGGCGCTTCACAAACATCTTAGCAA...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGGGCAGGTCACTTTGTTaGCAGACTTCTCCCACGCGA +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMGRSLC*QTSPTR
Trigger: TCGCGTGGGAGAAGTCTGTCAACAAAGTGACCTGCC...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATAGCTGCAAACTCTTCTaGGCTAGTGTACCCTCCACG +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNSCKLF*ASVPST
Trigger: CGTGGAGGGTACACTAGCTCAGAAGAGTTTGCAGCT...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CAGAGAACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACAAAGAAGCGTCGCATaGCGTGCCCAGCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: QRTLVLVFSQRQKVDGVKQRSVA*RAQPCP
Trigger: TGGGCAAGGCTGGGCACGTCATGCGACGCTTCTTTG...TTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGTTCTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCAGGATGGATGTCACTaGTTACATCCTGGGAAGGTG +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKQDGCH*LHPGKV
Trigger: CACCTTCCCAGGATGTAAGCAGTGACATCCATCCTG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGCAGCTCCTTTTCTGCTaGTTCATCAGGATGGATGTC +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLQLLFC*FIRMDV
Trigger: GACATCCATCCTGATGAAGCAGCAGAAAAGGAGCTG...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp ACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACAATGGCCTCCAGCTCCAGGCTaGCTACCAAGCCAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: TLVLVFSQRQKVDGVKQWPPAPG*LPSQCH
Trigger: ATGGCACTGGCTTGGTAGGCAGCCTGGAGCTGGAGG...CCATTGTTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATCAGAGATCACAGGGTTaGCCTCCAGAGGCAACTTGT +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNQRSQG*PPEATC
Trigger: ACAAGTTGCCTCTGGAGGGCAACCCTGTGATCTCTG...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCCAGAGATCACAGGGTTaGCCTCCAGAGGCAACTTGT +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTIQRSQG*PPEATC
Trigger: ACAAGTTGCCTCTGGAGGGCAACCCTGTGATCTCTG...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGCCTGTTCAGAGTCACTaGAACTGTTCAGTCCAAAGC +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGPVQSH*NCSVQS
Trigger: GCTTTGGACTGAACAGTTGCAGTGACTCTGAACAGG...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGAGCTGGAGAGATTTCTaGAGATGCTGTCAAGGAGGC +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKSWRDF*RCCQGG
Trigger: GCCTCCTTGACAGCATCTGCAGAAATCTCTCCAGCT...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGAGTCTGGAAGGCAGCTaGTGGAGAAGGTTCAGGGGA +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMSLEGS*WRRFRG
Trigger: TCCCCTGAACCTTCTCCAGCAGCTGCCTTCCAGACT...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGGCTGACATTTTTCCTTaGTGGGGAGACAGTCTGGAA +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLADIFP*WGDSLE
Trigger: TTCCAGACTGTCTCCCCAGCAAGGAAAAATGTCAGC...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATACCAGAGACTGCAACTaGTCCTCCAGTCGTCTCTTC +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNTRDCN*SSSRLF
Trigger: GAAGAGACGACTGGAGGAGCAGTTGCAGTCTCTGGT...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGTCTCTTCGCCACCCATaGTGGAGGGGAAGACGAACT +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMSLRHP*WRGRRT
Trigger: AGTTCGTCTTCCCCTCCAGCATGGGTGGCGAAGAGA...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CAGAGAACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAATACCAAGTCTCCCCCTaGCACCGATGGCTGCCCTTC +
Preference number: 4 (lower is better)
Translates to: QRTLVLVFSQRQKVDGVKYQVSP*HRWLPF
Trigger: GAAGGGCAGCCATCGGTGGCAGGGGGAGACTTGGTA...TTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGTTCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TGTCCGCTCCCCAGCCACCGAGCTTCAGAAAAGGCTAGAGACTCACAGAAACTCTCGTTTGCCAGTGATTaGTTGAATTCTGGAAGGAAT +
Preference number: 4 (lower is better)
Translates to: CPLPSHRASEKARDSQKLSFASD*LNSGRN
Trigger: ATTCCTTCCAGAATTCAAGCAATCACTGGCAAACGA...GAGTTTCTGTGAGTCTCTAGCCTTTTCTGAAGCTCGGTGGCTGGGGAGCGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGTCGTTTGCCAGTGATTaGTTGAATTCTGGAAGGAAT +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLESFASD*LNSGRN
Trigger: ATTCCTTCCAGAATTCAAGCAATCACTGGCAAACGA...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGTTCTTAGTGTCCTTCTaGTTCAAGCTCTTGGTGTCT +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGFLVSF*FKLLVS
Trigger: AGACACCAAGAGCTTGAAGCAGAAGGACACTAAGAA...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGCAAAGCCTAGCACTTTaGCAAAACTGTGAAGGAACT +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGQSLAL*QNCEGT
Trigger: AGTTCCTTCACAGTTTTGGCAAAGTGCTAGGCTTTG...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATTGGCTCCACTCTATATaGCATGAGGAAGCAGCGCAG +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNWLHSI*HEEAAQ
Trigger: CTGCGCTGCTTCCTCATGGCATATAGAGTGGAGCCA...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTGAGCTGTTAAGCTCATaGACAAGGAAGGCTAGAATA +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCELLSS*TRKARI
Trigger: TATTCTAGCCTTCCTTGTGCATGAGCTTAACAGCTC...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAACTTCTTTTCGACCCCTaGGGCCATGGACAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFELLFDP*GHGQLL
Trigger: CAACAGCTGTCCATGGCCGCAGGGGTCGAAAAGAAG...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTTGGAATGCTAGATGCTaGAACATCAATCTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPWNARC*NINLSF
Trigger: GAAGGAGAGATTGATGTTGCAGCATCTAGCATTCCA...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGTGGAATGCTAGATGCTaGAACATCAATCTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGWNARC*NINLSF
Trigger: GAAGGAGAGATTGATGTTGCAGCATCTAGCATTCCA...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CAGAGAACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACGGATGCCTCGGGGATaGAGTGCCTTGAGCAGGACA +
Preference number: 4 (lower is better)
Translates to: QRTLVLVFSQRQKVDGVKRMPRG*SALSRT
Trigger: TGTCCTGCTCAAGGCACTGCATCCCCGAGGCATCCG...TTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGTTCTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGAAACTTTTCCCTTGCTaGGGGAAGTTCATGGGAGAC +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLKLFPC*GKFMGD
Trigger: GTCTCCCATGAACTTCCCCCAGCAAGGGAAAAGTTT...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGAGGACGGAGACTTCTTaGTGTAAAGACTCCACAGAG +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLRTETS*CKDSTE
Trigger: CTCTGTGGAGTCTTTACACCAAGAAGTCTCCGTCCT...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTGTCTTCACTGAGAATTaGAGTGTCTTCCAGTTGATC +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPVFTEN*SVFQLI
Trigger: GATCAACTGGAAGACACTCCAATTCTCAGTGAAGAC...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAAGGCTTCCAAAGAGATaGCTGGCAGAGCAGGTGAGG +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFERLPKR*LAEQVR
Trigger: CCTCACCTGCTCTGCCAGCCATCTCTTTGGAAGCCT...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGCTTCGCCACCCATGCTaGAGGGGAAGACGAACTTCT +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMLRHPC*RGRRTS
Trigger: AGAAGTTCGTCTTCCCCTCCAGCATGGGTGGCGAAG...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATTCCTCTGCTGATAACTaGACCCACTGCAAGCCCTCT +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNSSADN*THCKPS
Trigger: AGAGGGCTTGCAGTGGGTCCAGTTATCAGCAGAGGA...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAACTAGCCGCTTCTGTGTaGCAAGGGTCTTGTCTGCTC +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFELAASV*QGSCLL
Trigger: GAGCAGACAAGACCCTTGCCACACAGAAGCGGCTAG...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCTGAGAAAGCCCTACTaGACAGTGTCAAACCAGGGA +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKLRKPY*TVSNQG
Trigger: TCCCTGGTTTGACACTGTCCAGTAGGGCTTTCTCAG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGGGCAGACCAGGATCATaGAGTGCAGCCTTCAGCAGT +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMGRPGS*SAAFSS
Trigger: ACTGCTGAAGGCTGCACTCCATGATCCTGGTCTGCC...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAAGCCTTCTGTTGAGGTaGCTGGGCCTGAAAAGGCTG +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFESLLLR*LGLKRL
Trigger: CAGCCTTTTCAGGCCCAGCCACCTCAACAGAAGGCT...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGAGCCTTCTGTTGAGGTaGCTGGGCCTGAAAAGGCTG +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMSLLLR*LGLKRL
Trigger: CAGCCTTTTCAGGCCCAGCCACCTCAACAGAAGGCT...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTGAGTTTTTCTATATaGCGCTCTAGCTCTGGAATG +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLLSFSI*RSSSGM
Trigger: CATTCCAGAGCTAGAGCGCCATATAGAAAAACTCAG...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGGACAAGAAGGCAGACTaGCTGAGGTCATGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMDKKAD*LRSCWL
Trigger: GAGCCAGCATGACCTCAGCCAGTCTGCCTTCTTGTC...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATAGAGACTGCAGGAGGTaGTGTAGGAGCAGCATCACA +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNRDCRR*CRSSIT
Trigger: TGTGATGCTGCTCCTACACCACCTCCTGCAGTCTCT...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAAGGGAGGGAGTAGGTTaGTCCTCAGAGACTGCAGGA +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFEREGVG*SSETAG
Trigger: TCCTGCAGTCTCTGAGGACCAACCTACTCCCTCCCT...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCATGCACAAGCACACTTaGGCTGCACTACGGCACCTT +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTIMHKHT*AALRHL
Trigger: AAGGTGCCGTAGTGCAGCCCAAGTGTGCTTGTGCAT...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGATGGACCTTTCTAGCTaGCCCATGCACAAGCACACT +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKMDLSS*PMHKHT
Trigger: AGTGTGCTTGTGCATGGGCCAGCTAGAAAGGTCCAT...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGGAACAGCCTCCATCTTaGGCCGATGACAGTAAATGT +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGEQPPS*ADDSKC
Trigger: ACATTTACTGTCATCGGCCCAAGATGGAGGCTGTTC...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGGAACAGCCTCCATCTTaGGCCGATGACAGTAAATGT +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLEQPPS*ADDSKC
Trigger: ACATTTACTGTCATCGGCCCAAGATGGAGGCTGTTC...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGGAACCAATCTCCTTCTaGAACAGCCTCCATCTTGGG +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKEPISF*NSLHLG
Trigger: CCCAAGATGGAGGCTGTTCCAGAAGGAGATTGGTTC...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCTCTTCCTCTACCTGCTaGGACAGACAGACAGCACAG +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTISSSTC*DRQTAQ
Trigger: CTGTGCTGTCTGTCTGTCCCAGCAGGTAGAGGAAGA...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTTTCTGGGAAGGTCAGTaGAAAACTACTTTTCCGCTT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCFWEGQ*KTTFPL
Trigger: AAGCGGAAAAGTAGTTTTCCACTGACCTTCCCAGAA...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
3UTR CAA 72 bp TCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTaGGAGAAGATGCCACAAAGTGACTCCCAACTTCCT +
Preference number: 4 (lower is better)
Translates to: SAGENGRFLFGR*EKMPQSDSQLP
Trigger: AGGAAGTTGGGAGTCACTTTGTGGCATCTTCTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTAGAGTTCAAAATCCCTaGAGTAGTAGTGTGAGATAC +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCRVQNP*SSSVRY
Trigger: GTATCTCACACTACTACTTCAGGGATTTTGAACTCT...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CTCATCTGTGCACGTGCACACACACAGACACAAAACACACACCCACACCCACCTAGAGTTCAAAATCCCTaGAGTAGTAGTGTGAGATAC +
Preference number: 4 (lower is better)
Translates to: LICARAHTQTQNTHPHPPRVQNP*SSSVRY
Trigger: GTATCTCACACTACTACTTCAGGGATTTTGAACTCT...AGGTGGGTGTGGGTGTGTGTTTTGTGTCTGTGTGTGTGCACGTGCACAGATGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATGGCAGATGGGTACTGTaGGTAGTTCCAAAGACAGTC +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNGRWVL*VVPKTV
Trigger: GACTGTCTTTGGAACTACTCACAGTACCCATCTGCC...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp ACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACAATGGGTTGTGACTTGGGGATaGAGGTTGTCGGTTGCCCCC +
Preference number: 4 (lower is better)
Translates to: TLVLVFSQRQKVDGVKQWVVTWG*RLSVAP
Trigger: GGGGGCAACCGACAACCTTCATCCCCAAGTCACAAC...CCATTGTTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCGGTTCAGGGGAACCTTaGGGAGAAGTTACTGGAGTT +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTIGSGEP*GEVTGV
Trigger: AACTCCAGTAACTTCTCCTCAAGGTTCCCCTGAACC...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGACTTTGCCAAAACTGTaGAGGAACTCCACGATGGTC +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKTLPKL*RNSTMV
Trigger: GACCATCGTGGAGTTCCTTCACAGTTTTGGCAAAGT...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp ACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACAATGGGTCCCTCCAGGCAAGTaGGTGGAAGAGAGCTGCACT +
Preference number: 4 (lower is better)
Translates to: TLVLVFSQRQKVDGVKQWVPPGK*VEESCT
Trigger: AGTGCAGCTCTCTTCCACTCACTTGCCTGGAGGGAC...CCATTGTTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCTTGCTAAGATGTTTGTaGAGCGCCTTCTCCCGGATG +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTILLRCL*SAFSRM
Trigger: CATCCGGGAGAAGGCGCTTCACAAACATCTTAGCAA...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR TCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGGAAAACCAGGCCTCTaGGTGTACTCTTCCTCTACC +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFEGKPGL*VYSSST
Trigger: GGTAGAGGAAGAGTACACTCAGAGGCCTGGTTTTCC...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGTTCAAACTTTTCCCTTaGTGGGGGAAGTTCATGGGA +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGFKLFP*WGKFMG
Trigger: TCCCATGAACTTCCCCCAGCAAGGGAAAAGTTTGAA...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCAGCTCCTTTTCTGCTaGTTCATCAGGATGGATGTC +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKQLLFC*FIRMDV
Trigger: GACATCCATCCTGATGAAGCAGCAGAAAAGGAGCTG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCCTTCTGAGTCAGCTCCTTTTCTaGTGCTTCATCAGGATGGAT +
Preference number: 4 (lower is better)
Translates to: HNPFSPHFYNQVWDLLLLSQLLF*CFIRMD
Trigger: ATCCATCCTGATGAAGCAGCAGAAAAGGAGCTGACT...CAGAAGGAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGCTATACCATAAAGACTaGCACTCACTGGCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKLYHKD*HSLALL
Trigger: CAGCAGAGCCAGTGAGTGGCAGTCTTTATGGTATAG...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGAGGCAACTTGTCTTCTaGACCCATCAGCTCCGCATC +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMRQLVF*THQLRI
Trigger: GATGCGGAGCTGATGGGTGCAGAAGACAAGTTGCCT...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAACAGAGATCACAGGGTTaGCCTCCAGAGGCAACTTGT +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFEQRSQG*PPEATC
Trigger: ACAAGTTGCCTCTGGAGGGCAACCCTGTGATCTCTG...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GATGAGGAAAGAAAAGTGAGAAATGGCCCCTTTGATCACATCCTGCCCACAATCAGAGATTTCTGCAGATaGTGTCAAGGAGGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: DEERKVRNGPFDHILPTIRDFCR*CQGGCW
Trigger: CCAGCAGCCTCCTTGACAGCATCTGCAGAAATCTCT...GATTGTGGGCAGGATGTGATCAAAGGGGCCATTTCTCACTTTTCTTTCCTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATAGCTGGAGAGATTTCTaGAGATGCTGTCAAGGAGGC +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNSWRDF*RCCQGG
Trigger: GCCTCCTTGACAGCATCTGCAGAAATCTCTCCAGCT...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGTCTGGGACCTCCTCTCGTTTGCCAGTGATTaGTTGAATTCTGGAAGGAAT +
Preference number: 4 (lower is better)
Translates to: PAHNPFSPHFYNQVWDLLSFASD*LNSGRN
Trigger: ATTCCTTCCAGAATTCAAGCAATCACTGGCAAACGA...GAGGAGGTCCCAGACTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TTAGGTCAGCTAGCAGCCACCTCCCCAGTGCAAGTACCCGTAATTTCTGATGGGTCGTTTGCCAGTGATTaGTTGAATTCTGGAAGGAAT +
Preference number: 4 (lower is better)
Translates to: LGQLAATSPVQVPVISDGSFASD*LNSGRN
Trigger: ATTCCTTCCAGAATTCAAGCAATCACTGGCAAACGA...CCCATCAGAAATTACGGGTACTTGCACTGGGGAGGTGGCTGCTAGCTGACCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp TCAGTCACACACAGGGCAGTGGTAGACCCAAATCCTCCTCTCTGCCCATTCTGTTCCTTCAGCTTTTCCTaGTTTGTCTTCATCTTCTCT +
Preference number: 4 (lower is better)
Translates to: SVTHRAVVDPNPPLCPFCSFSFS*FVFIFS
Trigger: AGAGAAGATGAAGACAAAGCAGGAAAAGCTGAAGGA...ACAGAATGGGCAGAGAGGAGGATTTGGGTCTACCACTGCCCTGTGTGTGACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR GCA 90 bp CAGAGAACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAAGGGCACCATTGGGTGTaGTCAGTAGGGCCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: QRTLVLVFSQRQKVDGVKGHHWV*SVGPSP
Trigger: TGGAGAAGGCCCTACTGAGCACACCCAATGGTGCCC...TTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGTTCTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GGGAATAAACACATGTGGGGAACAATGAGTCCCATCACACTACAGGGTCACAATACTAGACCCCAACATTaGAGAAGTCTGAGGGGAGGT +
Preference number: 4 (lower is better)
Translates to: GNKHMWGTMSPITLQGHNTRPQH*RSLRGG
Trigger: ACCTCCCCTCAGACTTCTCCAATGTTGGGGTCTAGT...ATTGTGACCCTGTAGTGTGATGGGACTCATTGTTCCCCACATGTGTTTATTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCCTTTGATCACATCCTGCCCACAATCCCTTCAGTCCCCATTTCTACAATCAAGAGGACGGAGACTTCTTaGTGTAAAGACTCCACAGAG +
Preference number: 4 (lower is better)
Translates to: PFDHILPTIPSVPISTIKRTETS*CKDSTE
Trigger: CTCTGTGGAGTCTTTACACCAAGAAGTCTCCGTCCT...CTTGATTGTAGAAATGGGGACTGAAGGGATTGTGGGCAGGATGTGATCAAAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAAGGCGAGGATGCTACTaGAGAGACAGCTGGAGAGAT +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFERRGCY*RDSWRD
Trigger: ATCTCTCCAGCTGTCTCTCCAGTAGCATCCTCGCCT...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAATCCTCTGCTGATAACTaGACCCACTGCAAGCCCTCT +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFESSADN*THCKPS
Trigger: AGAGGGCTTGCAGTGGGTCCAGTTATCAGCAGAGGA...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACAGGTTTCCAGTTTCTTTaGAAGTCGGTTATCTGTTTT +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTGFQFL*KSVICF
Trigger: AAAACAGATAACCGACTTCCAAAGAAACTGGAAACC...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CCAGGGCAGCCATCAGCAGGTGAGAACGGCAGGTTTTTGTTTGGAAGGTTGGAGTCACTCAGTATTTCTTaGGTTTCCAGTTTCTTTGGA +
Preference number: 4 (lower is better)
Translates to: PGQPSAGENGRFLFGRLESLSIS*VSSFFG
Trigger: TCCAAAGAAACTGGAAACCCAAGAAATACTGAGTGA...CTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATGGCTGCCCTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACACACTTGGGAGTTAAGTCCACTTTACTGGCCGTCACTGCGGGTCCGCACACATCACTCAGTATTTCTTaGGTTTCCAGTTTCTTTGGA +
Preference number: 4 (lower is better)
Translates to: THLGVKSTLLAVTAGPHTSLSIS*VSSFFG
Trigger: TCCAAAGAAACTGGAAACCCAAGAAATACTGAGTGA...TGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAAGTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAACTATTGCTATTGTTAAATAGCCCCAGGATGCTGAGGCATGGACAGGGAGGGTCTGCTTCAAGCTCTTaGTGTCTTGCTTCCTCTTGT +
Preference number: 4 (lower is better)
Translates to: ELLLLLNSPRMLRHGQGGSASSS*CLASSC
Trigger: ACAAGAGGAAGCAAGACACCAAGAGCTTGAAGCAGA...CCCTCCCTGTCCATGCCTCAGCATCCTGGGGCTATTTAACAATAGCAATAGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGAAGTCAGGCAGGGGCTaGTGGTCAGACAGACACATA +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMKSGRG*WSDRHI
Trigger: TATGTGTCTGTCTGACCACCAGCCCCTGCCTGACTT...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp TCAAAGCTAGTGAAGGGAGAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAAAGTCAGGCAGGGGCTaGTGGTCAGACAGACACATA +
Preference number: 4 (lower is better)
Translates to: SKLVKGEGVPAEKIAQFEKSGRG*WSDRHI
Trigger: TATGTGTCTGTCTGACCACCAGCCCCTGCCTGACTT...TTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTCTCCCTTCACTAGCTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGCGACCCCTGCGGCCATaGACAGCTGTTGTATTTTCT +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMRPLRP*TAVVFS
Trigger: AGAAAATACAACAGCTGTCCATGGCCGCAGGGGTCG...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp GAGGGAGTTCCTGCTGAAAAGATTGCACAGTTTGAAGAGGCTGGAAAAGAAATGAGAGACTGCAGGAGGTaGTGTAGGAGCAGCATCACA +
Preference number: 4 (lower is better)
Translates to: EGVPAEKIAQFEEAGKEMRDCRR*CRSSIT
Trigger: TGTGATGCTGCTCCTACACCACCTCCTGCAGTCTCT...CATTTCTTTTCCAGCCTCTTCAAACTGTGCAATCTTTTCAGCAGGAACTCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp CAGAGAACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAAAGCTCCTCCACCCACTaGAGCACAGCTAGGTCTGTC +
Preference number: 4 (lower is better)
Translates to: QRTLVLVFSQRQKVDGVKSSSTH*STARSV
Trigger: GACAGACCTAGCTGTGCTCCAGTGGGTGGAGGAGCT...TTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGTTCTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2
ENSMUST00000238829.2
CDS-3UTR CCA 90 bp ACCCTTGTTCTTGTGTTTTCCCAAAGACAAAAGGTTGATGGTGTGAAACAATGGAGCTCCTCCACCCACTaGAGCACAGCTAGGTCTGTC +
Preference number: 4 (lower is better)
Translates to: TLVLVFSQRQKVDGVKQWSSSTH*STARSV
Trigger: GACAGACCTAGCTGTGCTCCAGTGGGTGGAGGAGCT...CCATTGTTTCACACCATCAACCTTTTGTCTTTGGGAAAACACAAGAACAAGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045621.9
ENSMUST00000170054.9
ENSMUST00000217851.2
ENSMUST00000220049.2