Pregenerated sensors for BATF3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026630Ensembl transcript IDs: ENSMUST00000027943.6
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGGCTAGCTGCCAAAGTGAGAGAGGAACGACTCAAAGGGCCTTCTTaGTGGGGCCTCTGGATCCTCTGTCCTGGGGCCGGAAGGCAGGGG | + |
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Preference number: 1 (lower is better) Translates to: RLAAKVREERLKGPS*WGLWILCPGAGRQG Trigger: CCCCTGCCTTCCGGCCCCAGGACAGAGGATCCAGAGGCCCCAGCAAGAAGGCCCTTTGAGTCGTTCCTCTCTCACTTTGGCAGCTAGCCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| 3UTR CAA 90 bp | CCGGCTAGCTGCCAAAGTGAGAGAGGAACGACTCAAAGGGCCTTCTaGCTGGGGCCTCTGGATCCTCTGTCCTGGGGCCGGAAGGCAGGG | + |
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Preference number: 2 (lower is better) Translates to: PASCQSERGTTQRAF*LGPLDPLSWGRKAG Trigger: CCCTGCCTTCCGGCCCCAGGACAGAGGATCCAGAGGCCCCAGCAAGAAGGCCCTTTGAGTCGTTCCTCTCTCACTTTGGCAGCTAGCCGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| 3UTR-3UTR TCA 90 bp | ACAGCACCGGCTAGCTGCCAAAGTGAGAGAGGAACGACTCAAAGGGCCTTCTTGCCCAGAGCACGATGCTaGGCCCAGGCTGGCCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: TAPASCQSERGTTQRAFLPRARC*AQAGPR Trigger: TCTGGGGCCAGCCTGGGCTCAGCATCGTGCTCTGGG...CAAGAAGGCCCTTTGAGTCGTTCCTCTCTCACTTTGGCAGCTAGCCGGTGCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| 3UTR-3UTR CCA 90 bp | GGACAGCACCGGCTAGCTGCCAAAGTGAGAGAGGAACGACTCAAAGGGCCTTCTGGCCCCAGAGCTCCCTaGAAGGGCACAGCCACATGT | + |
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Preference number: 2 (lower is better) Translates to: GQHRLAAKVREERLKGPSGPRAP*KGTATC Trigger: ACATGTGGCTGTGCCCTTCCAGGGAGCTCTGGGGCC...AGAAGGCCCTTTGAGTCGTTCCTCTCTCACTTTGGCAGCTAGCCGGTGCTGTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| 3UTR-3UTR CCA 90 bp | ACTATCTTTATTTTCCAAGTTCTAGACGAAAAGATCCTGCCAAAGGACAGCACCCTGGATCCTCTGTCCTaGGGCCGGAAGGCAGGGGCC | + |
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Preference number: 2 (lower is better) Translates to: TIFIFQVLDEKILPKDSTLDPLS*GRKAGA Trigger: GGCCCCTGCCTTCCGGCCCCAGGACAGAGGATCCAG...GGTGCTGTCCTTTGGCAGGATCTTTTCGTCTAGAACTTGGAAAATAAAGATAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| 3UTR-3UTR CCA 90 bp | AACTATCTTTATTTTCCAAGTTCTAGACGAAAAGATCCTGCCAAAGGACAGCACAAAGGGCCTTCTTGCTaGGGCCTCTGGATCCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: NYLYFPSSRRKDPAKGQHKGPSC*GLWILC Trigger: ACAGAGGATCCAGAGGCCCCAGCAAGAAGGCCCTTT...GTGCTGTCCTTTGGCAGGATCTTTTCGTCTAGAACTTGGAAAATAAAGATAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| 3UTR GCA 72 bp | GCCAAAGTGAGAGAGGAACGACTCAAAGGGCCTTCTTaGTGGGGCCTCTGGATCCTCTGTCCTGGGGCCGGA | + |
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Preference number: 3 (lower is better) Translates to: AKVREERLKGPS*WGLWILCPGAG Trigger: TCCGGCCCCAGGACAGAGGATCCAGAGGCCCCAGCAAGAAGGCCCTTTGAGTCGTTCCTCTCTCACTTTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| 3UTR CCA 72 bp | AAAGTGAGAGAGGAACGACTCAAAGGGCCTTCTTGCTaGGGCCTCTGGATCCTCTGTCCTGGGGCCGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: KVREERLKGPSC*GLWILCPGAGR Trigger: CCTTCCGGCCCCAGGACAGAGGATCCAGAGGCCCCAGCAAGAAGGCCCTTTGAGTCGTTCCTCTCTCACTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| 3UTR CCA 72 bp | CAGAGCTCCCTGGAAGGGCACAGCCACATGTACCCCTaGACACAGGTGTGTAGGGAAACTCCTGAGTGTGCA | + |
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Preference number: 3 (lower is better) Translates to: QSSLEGHSHMYP*TQVCRETPECA Trigger: TGCACACTCAGGAGTTTCCCTACACACCTGTGTCCAGGGGTACATGTGGCTGTGCCCTTCCAGGGAGCTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| 3UTR GCA 72 bp | ACGAAAAGATCCTGCCAAAGGACAGCACCGGCTAGCTaGCAAAGTGAGAGAGGAACGACTCAAAGGGCCTTC | + |
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Preference number: 3 (lower is better) Translates to: TKRSCQRTAPAS*QSERGTTQRAF Trigger: GAAGGCCCTTTGAGTCGTTCCTCTCTCACTTTGGCAGCTAGCCGGTGCTGTCCTTTGGCAGGATCTTTTCGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| CDS-3UTR GCA 90 bp | CAAAGGGCCTTCTTGCTGGGGCCTCTGGATCCTCTGTCCTGGGGCCGGAAGGCACCGGCTCCTCTGAGCTaGAACCCGGTTTTTCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: QRAFLLGPLDPLSWGRKAPAPLS*NPVFLS Trigger: AGAGAGAAAAACCGGGTTGCAGCTCAGAGGAGCCGG...TGCCTTCCGGCCCCAGGACAGAGGATCCAGAGGCCCCAGCAAGAAGGCCCTTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| 3UTR CAA 72 bp | TGCCAAAGTGAGAGAGGAACGACTCAAAGGGCCTTCTaGCTGGGGCCTCTGGATCCTCTGTCCTGGGGCCGG | + |
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Preference number: 4 (lower is better) Translates to: CQSERGTTQRAF*LGPLDPLSWGR Trigger: CCGGCCCCAGGACAGAGGATCCAGAGGCCCCAGCAAGAAGGCCCTTTGAGTCGTTCCTCTCTCACTTTGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| CDS-3UTR TCA 90 bp | ACAGCACCGGCTAGCTGCCAAAGTGAGAGAGGAACGACTCAAAGGGCCTTCTTGGCTGGCCACGGGGTCTaGCCGAAGCTGCACAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: TAPASCQSERGTTQRAFLAGHGV*PKLHKV Trigger: AACTTTGTGCAGCTTCGGTCAGACCCCGTGGCCAGC...CAAGAAGGCCCTTTGAGTCGTTCCTCTCTCACTTTGGCAGCTAGCCGGTGCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| CDS-3UTR GCA 90 bp | ACAGCACCGGCTAGCTGCCAAAGTGAGAGAGGAACGACTCAAAGGGCCTTCTTGAGCACAGAGTTCTCCTaGTCCAGGCTCTCGTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: TAPASCQSERGTTQRAFLSTEFS*SRLSCS Trigger: GGAGCACGAGAGCCTGGAGCAGGAGAACTCTGTGCT...CAAGAAGGCCCTTTGAGTCGTTCCTCTCTCACTTTGGCAGCTAGCCGGTGCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| CDS-3UTR GCA 90 bp | ACAGCACCGGCTAGCTGCCAAAGTGAGAGAGGAACGACTCAAAGGGCCTTCTTGGGGCACATCTTCTCGTaGTCCTTCAGCACCTCGCTC | + |
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Preference number: 4 (lower is better) Translates to: TAPASCQSERGTTQRAFLGHIFS*SFSTSL Trigger: GAGCGAGGTGCTGAAGGAGCACGAGAAGATGTGCCC...CAAGAAGGCCCTTTGAGTCGTTCCTCTCTCACTTTGGCAGCTAGCCGGTGCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| CDS-3UTR CCA 90 bp | CAAAGTGAGAGAGGAACGACTCAAAGGGCCTTCTTGCTGGGGCCTCTGGATCCTCTCTCGTGCTCCTCGTaGAGCTTGTCAGCCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: QSERGTTQRAFLLGPLDPLSCSS*SLSAFW Trigger: CCAGAAGGCTGACAAGCTCCACGAGGAGCACGAGAG...AGGATCCAGAGGCCCCAGCAAGAAGGCCCTTTGAGTCGTTCCTCTCTCACTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| CDS-3UTR GCA 90 bp | CAAAGTGAGAGAGGAACGACTCAAAGGGCCTTCTTGCTGGGGCCTCTGGATCCTGCTTCGAAATCTCCCTaGGCAGCACAGAGTTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: QSERGTTQRAFLLGPLDPASKSP*AAQSSP Trigger: AGGAGAACTCTGTGCTGCGCAGGGAGATTTCGAAGC...AGGATCCAGAGGCCCCAGCAAGAAGGCCCTTTGAGTCGTTCCTCTCTCACTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| CDS-3UTR CCA 90 bp | ACTATCTTTATTTTCCAAGTTCTAGACGAAAAGATCCTGCCAAAGGACAGCACCAGCTTGTCAGCCTTCTaGGTCTGCTTCTTCCGGCTC | + |
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Preference number: 4 (lower is better) Translates to: TIFIFQVLDEKILPKDSTSLSAF*VCFFRL Trigger: GAGCCGGAAGAAGCAGACCCAGAAGGCTGACAAGCT...GGTGCTGTCCTTTGGCAGGATCTTTTCGTCTAGAACTTGGAAAATAAAGATAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| CDS GCA 90 bp | CCTCGCTCAGGTGACGCAGCTCCTCCTTCAGCTTCGAAATCTCCCTaGGCAGCACAGAGTTCTCCTGCTCCAGGCTCTCGTGCTCCTCGT | + |
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Preference number: 5 (lower is better) Translates to: PRSGDAAPPSASKSP*AAQSSPAPGSRAPR Trigger: ACGAGGAGCACGAGAGCCTGGAGCAGGAGAACTCTGTGCTGCGCAGGGAGATTTCGAAGCTGAAGGAGGAGCTGCGTCACCTGAGCGAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| CDS GCA 90 bp | GAAATCTCCCTGCGCAGCACAGAGTTCTCCTGCTCCAGGCTCTCGTaGTCCTCGTGGAGCTTGTCAGCCTTCTGGGTCTGCTTCTTCCGG | + |
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Preference number: 5 (lower is better) Translates to: EISLRSTEFSCSRLS*SSWSLSAFWVCFFR Trigger: CCGGAAGAAGCAGACCCAGAAGGCTGACAAGCTCCACGAGGAGCACGAGAGCCTGGAGCAGGAGAACTCTGTGCTGCGCAGGGAGATTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| CDS-3UTR CAA 90 bp | CCTGAGTGTGCAAACCAAGGTTCCGAGCCGGACAAAGGAGGAGTGAGCTGGGGTTGCTCCTCGTGGAGCTaGTCAGCCTTCTGGGTCTGC | + |
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Preference number: 5 (lower is better) Translates to: PECANQGSEPDKGGVSWGCSSWS*SAFWVC Trigger: GCAGACCCAGAAGGCTGACAAGCTCCACGAGGAGCA...ACCCCAGCTCACTCCTCCTTTGTCCGGCTCGGAACCTTGGTTTGCACACTCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| CDS GCA 90 bp | TCCTCCTTCAGCTTCGAAATCTCCCTGCGCAGCACAGAGTTCTCCTaGTCCAGGCTCTCGTGCTCCTCGTGGAGCTTGTCAGCCTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: SSFSFEISLRSTEFS*SRLSCSSWSLSAFW Trigger: CCAGAAGGCTGACAAGCTCCACGAGGAGCACGAGAGCCTGGAGCAGGAGAACTCTGTGCTGCGCAGGGAGATTTCGAAGCTGAAGGAGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| CDS-3UTR CAA 90 bp | GGACAGCACCGGCTAGCTGCCAAAGTGAGAGAGGAACGACTCAAAGGGCCTTCTTTCCTGTCATCGTCCTaGGGGCTCTGCGGCTGGTTC | + |
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Preference number: 5 (lower is better) Translates to: GQHRLAAKVREERLKGPSFLSSS*GLCGWF Trigger: GAACCAGCCGCAGAGCCCCAAGGACGATGACAGGAA...AGAAGGCCCTTTGAGTCGTTCCTCTCTCACTTTGGCAGCTAGCCGGTGCTGTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| CDS GCA 72 bp | CGTGGTAGACAGCTGGCCACGGGGTCTGACCGAAGCTaGACAAAGTTCATAGGACACAGCAGCAGCGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: RGRQLATGSDRS*TKFIGHSSSGH Trigger: GTGCCCGCTGCTGCTGTGTCCTATGAACTTTGTGCAGCTTCGGTCAGACCCCGTGGCCAGCTGTCTACCACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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| CDS GCA 72 bp | GGTGACGCAGCTCCTCCTTCAGCTTCGAAATCTCCCTaGGCAGCACAGAGTTCTCCTGCTCCAGGCTCTCGT | + |
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Preference number: 6 (lower is better) Translates to: GDAAPPSASKSP*AAQSSPAPGSR Trigger: ACGAGAGCCTGGAGCAGGAGAACTCTGTGCTGCGCAGGGAGATTTCGAAGCTGAAGGAGGAGCTGCGTCACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027943.6 |
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