Pregenerated sensors for BATF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034266Ensembl transcript IDs: ENSMUST00000040536.6
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAATACTTGTCCAGGCCTCTGCCACTGGGCCTCTGGGTAGAGGTATaGGGGCAGCCCGGCCTCAGTTTACATGCCCCTCCAAGGGATCAC | + |
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Preference number: 1 (lower is better) Translates to: QYLSRPLPLGLWVEV*GQPGLSLHAPPRDH Trigger: GTGATCCCTTGGAGGGGCATGTAAACTGAGGCCGGGCTGCCCTCATACCTCTACCCAGAGGCCCAGTGGCAGAGGCCTGGACAAGTATTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| 3UTR-3UTR GCA 90 bp | ACCACTACAGTTCTTGTGTTCAATACTTGTCCAGGCCTCTGCCACTGGGCCTCTCGGCCTCAGTTTACATaGCCCTCCAAGGGATCACGG | + |
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Preference number: 2 (lower is better) Translates to: TTTVLVFNTCPGLCHWASRPQFT*PSKGSR Trigger: CCGTGATCCCTTGGAGGGGCATGTAAACTGAGGCCG...AGAGGCCCAGTGGCAGAGGCCTGGACAAGTATTGAACACAAGAACTGTAGTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| 3UTR CCA 72 bp | TCCCTGGGAGAGTCCAGTACATTGACTATACTTCCCTaGGAGGCCTTAAGTCCCTCTGACCACTACAGTTCT | + |
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Preference number: 3 (lower is better) Translates to: SLGESSTLTILP*EALSPSDHYSS Trigger: AGAACTGTAGTGGTCAGAGGGACTTAAGGCCTCCCAGGGAAGTATAGTCAATGTACTGGACTCTCCCAGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR TCA 90 bp | TCTGCCACTGGGCCTCTGGGTAGAGGTATGAGGGCAGCCCGGCCTCAGTTTACAGGGGAGGAGAGCGGCTaGAGCTGGAGTCACTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: SATGPLGRGMRAARPQFTGEESG*SWSHCC Trigger: ACAGCAGTGACTCCAGCTTCAGCCGCTCTCCTCCCC...TGTAAACTGAGGCCGGGCTGCCCTCATACCTCTACCCAGAGGCCCAGTGGCAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR CCA 90 bp | GACCACTACAGTTCTTGTGTTCAATACTTGTCCAGGCCTCTGCCACTGGGCCTCGCGAGGGGGTGCCACTaGCCAGCACGGAGCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: DHYSSCVQYLSRPLPLGLARGCH*PARSTG Trigger: CCCTGTGCTCCGTGCTGGCCAGTGGCACCCCCTCGC...GAGGCCCAGTGGCAGAGGCCTGGACAAGTATTGAACACAAGAACTGTAGTGGTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR TCA 90 bp | GCCTCTGCCACTGGGCCTCTGGGTAGAGGTATGAGGGCAGCCCGGCCTCAGTTTGTGGCTGCTCAGCACTaGTGTGAAGTACTTGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: ASATGPLGRGMRAARPQFVAAQH*CEVLEL Trigger: GAGCTCAAGTACTTCACATCAGTGCTGAGCAGCCAC...AAACTGAGGCCGGGCTGCCCTCATACCTCTACCCAGAGGCCCAGTGGCAGAGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR TCA 90 bp | TCTGCCACTGGGCCTCTGGGTAGAGGTATGAGGGCAGCCCGGCCTCAGTTTACACCTCACATCATCAGATaGGTCCTGTTTGCCAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: SATGPLGRGMRAARPQFTPHIIR*VLFARG Trigger: CCCCCTGGCAAACAGGACTCATCTGATGATGTGAGG...TGTAAACTGAGGCCGGGCTGCCCTCATACCTCTACCCAGAGGCCCAGTGGCAGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR GCA 90 bp | TCTGCCACTGGGCCTCTGGGTAGAGGTATGAGGGCAGCCCGGCCTCAGTTTACACTCTTTGCGGAGAGCTaGGTTCTGTTTCTCCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: SATGPLGRGMRAARPQFTLFAES*VLFLQV Trigger: GACCTGGAGAAACAGAACGCAGCTCTCCGCAAAGAG...TGTAAACTGAGGCCGGGCTGCCCTCATACCTCTACCCAGAGGCCCAGTGGCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR TCA 90 bp | TCTGACCACTACAGTTCTTGTGTTCAATACTTGTCCAGGCCTCTGCCACTGGGCCGTGGCGAGCTGATGTaGGGCTGGTGGAAGGCATGG | + |
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Preference number: 4 (lower is better) Translates to: SDHYSSCVQYLSRPLPLGRGELM*GWWKAW Trigger: CCATGCCTTCCACCAGCCTCACATCAGCTCGCCACG...GCCCAGTGGCAGAGGCCTGGACAAGTATTGAACACAAGAACTGTAGTGGTCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR TCA 90 bp | ACTATACTTCCCTGGGAGGCCTTAAGTCCCTCTGACCACTACAGTTCTTGTGTTGGAAGCGTGGCGAGCTaGTGTGAGGCTGGTGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: TILPWEALSPSDHYSSCVGSVAS*CEAGGR Trigger: CCTTCCACCAGCCTCACATCAGCTCGCCACGCTTCC...AACACAAGAACTGTAGTGGTCAGAGGGACTTAAGGCCTCCCAGGGAAGTATAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR CCA 90 bp | AGTACATTGACTATACTTCCCTGGGAGGCCTTAAGTCCCTCTGACCACTACAGTTCAGGGCTGGAAGCGTaGCGAGCTGATGTGAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: STLTILPWEALSPSDHYSSGLEA*RADVRL Trigger: CAGCCTCACATCAGCTCGCCACGCTTCCAGCCCTGA...ACTGTAGTGGTCAGAGGGACTTAAGGCCTCCCAGGGAAGTATAGTCAATGTACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR CCA 90 bp | ACTATACTTCCCTGGGAGGCCTTAAGTCCCTCTGACCACTACAGTTCTTGTGTTGGCTGGTGGAAGGCATaGGCACTGTATACCACCTCG | + |
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Preference number: 4 (lower is better) Translates to: TILPWEALSPSDHYSSCVGWWKA*ALYTTS Trigger: CGAGGTGGTATACAGTGCCCATGCCTTCCACCAGCC...AACACAAGAACTGTAGTGGTCAGAGGGACTTAAGGCCTCCCAGGGAAGTATAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR TCA 90 bp | AGTACATTGACTATACTTCCCTGGGAGGCCTTAAGTCCCTCTGACCACTACAGTTCCTCACTCTCCAGGTaGAGGGTGTCGGCTTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: STLTILPWEALSPSDHYSSSLSR*RVSAFC Trigger: ACAGAAAGCCGACACCCTTCACCTGGAGAGTGAGGA...ACTGTAGTGGTCAGAGGGACTTAAGGCCTCCCAGGGAAGTATAGTCAATGTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR CCA 90 bp | GAGGCCTTAAGTCCCTCTGACCACTACAGTTCTTGTGTTCAATACTTGTCCAGGCTCTGTCGGCTCTTCTaGGCAGCGATGCGATTCTTC | + |
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Preference number: 4 (lower is better) Translates to: EALSPSDHYSSCVQYLSRLCRLF*AAMRFF Trigger: GAAGAATCGCATCGCTGCCCAGAAGAGCCGACAGAG...CCTGGACAAGTATTGAACACAAGAACTGTAGTGGTCAGAGGGACTTAAGGCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR GCA 90 bp | GAGGCCTTAAGTCCCTCTGACCACTACAGTTCTTGTGTTCAATACTTGTCCAGGTCTTCTGGGCAGCGATaGGATTCTTCTCTCTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: EALSPSDHYSSCVQYLSRSSGQR*DSSLSS Trigger: AGAGGAGAGAGAAGAATCGCATCGCTGCCCAGAAGA...CCTGGACAAGTATTGAACACAAGAACTGTAGTGGTCAGAGGGACTTAAGGCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR TCA 90 bp | ACTATACTTCCCTGGGAGGCCTTAAGTCCCTCTGACCACTACAGTTCTTGTGTTTTCTTCTCTCTCCTCTaGACTTTCCTCACATCATCA | + |
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Preference number: 4 (lower is better) Translates to: TILPWEALSPSDHYSSCVFFSLL*TFLTSS Trigger: TGATGATGTGAGGAAAGTTCAGAGGAGAGAGAAGAA...AACACAAGAACTGTAGTGGTCAGAGGGACTTAAGGCCTCCCAGGGAAGTATAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR CAA 90 bp | TCTGCCACTGGGCCTCTGGGTAGAGGTATGAGGGCAGCCCGGCCTCAGTTTACATCAGATGAGTCCTGTTaGCCAGGGGGAGGAGAGCGG | + |
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Preference number: 5 (lower is better) Translates to: SATGPLGRGMRAARPQFTSDESC*PGGGER Trigger: CCGCTCTCCTCCCCCTGGCAAACAGGACTCATCTGA...TGTAAACTGAGGCCGGGCTGCCCTCATACCTCTACCCAGAGGCCCAGTGGCAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS TCA 90 bp | GCCACTGGCCAGCACGGAGCACAGGGGCTCGTGGCTGCTCAGCACTaGTGTGAAGTACTTGAGCTCCTCGGTGAGCTGTTTGATCTCTTT | + |
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Preference number: 5 (lower is better) Translates to: ATGQHGAQGLVAAQH*CEVLELLGELFDLF Trigger: AAAGAGATCAAACAGCTCACCGAGGAGCTCAAGTACTTCACATCAGTGCTGAGCAGCCACGAGCCCCTGTGCTCCGTGCTGGCCAGTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS-3UTR CAA 90 bp | TCTGCCACTGGGCCTCTGGGTAGAGGTATGAGGGCAGCCCGGCCTCAGTTTACATCCTCGGTGAGCTGTTaGATCTCTTTGCGGAGAGCT | + |
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Preference number: 5 (lower is better) Translates to: SATGPLGRGMRAARPQFTSSVSC*ISLRRA Trigger: AGCTCTCCGCAAAGAGATCAAACAGCTCACCGAGGA...TGTAAACTGAGGCCGGGCTGCCCTCATACCTCTACCCAGAGGCCCAGTGGCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS CCA 72 bp | GGGGTGCCACTGGCCAGCACGGAGCACAGGGGCTCGTaGCTGCTCAGCACTGATGTGAAGTACTTGAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: GVPLASTEHRGS*LLSTDVKYLSS Trigger: GGAGCTCAAGTACTTCACATCAGTGCTGAGCAGCCACGAGCCCCTGTGCTCCGTGCTGGCCAGTGGCACCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS CAA 72 bp | AGGGGCTCGTGGCTGCTCAGCACTGATGTGAAGTACTaGAGCTCCTCGGTGAGCTGTTTGATCTCTTTGCGG | + |
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Preference number: 6 (lower is better) Translates to: RGSWLLSTDVKY*SSSVSCLISLR Trigger: CCGCAAAGAGATCAAACAGCTCACCGAGGAGCTCAAGTACTTCACATCAGTGCTGAGCAGCCACGAGCCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS CAA 90 bp | ACTGATGTGAAGTACTTGAGCTCCTCGGTGAGCTGTTTGATCTCTTaGCGGAGAGCTGCGTTCTGTTTCTCCAGGTCCTCACTCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: TDVKYLSSSVSCLIS*RRAAFCFSRSSLSR Trigger: CCTGGAGAGTGAGGACCTGGAGAAACAGAACGCAGCTCTCCGCAAAGAGATCAAACAGCTCACCGAGGAGCTCAAGTACTTCACATCAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS CAA 90 bp | CTGCTCAGCACTGATGTGAAGTACTTGAGCTCCTCGGTGAGCTGTTaGATCTCTTTGCGGAGAGCTGCGTTCTGTTTCTCCAGGTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: LLSTDVKYLSSSVSC*ISLRRAAFCFSRSS Trigger: TGAGGACCTGGAGAAACAGAACGCAGCTCTCCGCAAAGAGATCAAACAGCTCACCGAGGAGCTCAAGTACTTCACATCAGTGCTGAGCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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| CDS CAA 72 bp | AAGTACTTGAGCTCCTCGGTGAGCTGTTTGATCTCTTaGCGGAGAGCTGCGTTCTGTTTCTCCAGGTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: KYLSSSVSCLIS*RRAAFCFSRSS Trigger: TGAGGACCTGGAGAAACAGAACGCAGCTCTCCGCAAAGAGATCAAACAGCTCACCGAGGAGCTCAAGTACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040536.6 |
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