Pregenerated sensors for BASP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045763Ensembl transcript IDs: ENSMUST00000058845.9
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAATACTGCTTTCATAAAGATCTGATTGCCTTGGCACTGGTCCTGTaGGCAGAATCAAACGCCTCCCTCCCCAGCTGCATCGCGGGAGAG | + |
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Preference number: 1 (lower is better) Translates to: KYCFHKDLIALALVL*AESNASLPSCIAGE Trigger: CTCTCCCGCGATGCAGCTGGGGAGGGAGGCGTTTGATTCTGCCCACAGGACCAGTGCCAAGGCAATCAGATCTTTATGAAAGCAGTATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| 3UTR TCA 90 bp | GTCACTCCCAAAAATATCTGGAGAGGAAAAATGGAGGGTTGGCATTaGGATACATGTGGACAAGCTAAGTGGGCTCCGTCTGAAAGTTGG | + |
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Preference number: 1 (lower is better) Translates to: VTPKNIWRGKMEGWH*DTCGQAKWAPSESW Trigger: CCAACTTTCAGACGGAGCCCACTTAGCTTGTCCACATGTATCTCAATGCCAACCCTCCATTTTTCCTCTCCAGATATTTTTGGGAGTGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| 3UTR CCA 90 bp | ATGAGAGAATGTTTGTCACTCCCAAAAATATCTGGAGAGGAAAAATaGAGGGTTGGCATTGAGATACATGTGGACAAGCTAAGTGGGCTC | + |
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Preference number: 1 (lower is better) Translates to: MRECLSLPKISGEEK*RVGIEIHVDKLSGL Trigger: GAGCCCACTTAGCTTGTCCACATGTATCTCAATGCCAACCCTCCATTTTTCCTCTCCAGATATTTTTGGGAGTGACAAACATTCTCTCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| 3UTR-3UTR TCA 90 bp | CCCAACCACGGACATGCATTACTCGTCGTGAGAAATCTAGGTAGGCTAAGTATGGCCCCCTCCCTCCCCTaGTGGGACACATCCTCTTTA | + |
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Preference number: 2 (lower is better) Translates to: PNHGHALLVVRNLGRLSMAPSLP*WDTSSL Trigger: TAAAGAGGATGTGTCCCATCAGGGGAGGGAGGGGGC...CATACTTAGCCTACCTAGATTTCTCACGACGAGTAATGCATGTCCGTGGTTGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| 3UTR-3UTR CCA 90 bp | AGAACTACAGGTGCACCCAACCACGGACATGCATTACTCGTCGTGAGAAATCTATTGGCACTGGTCCTGTaGGCAGAATCAAACGCCTCC | + |
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Preference number: 2 (lower is better) Translates to: RTTGAPNHGHALLVVRNLLALVL*AESNAS Trigger: GGAGGCGTTTGATTCTGCCCACAGGACCAGTGCCAA...TAGATTTCTCACGACGAGTAATGCATGTCCGTGGTTGGGTGCACCTGTAGTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| 3UTR-3UTR TCA 90 bp | AGAACTACAGGTGCACCCAACCACGGACATGCATTACTCGTCGTGAGAAATCTAGCTTTCATAAAGATCTaGTTGCCTTGGCACTGGTCC | + |
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Preference number: 2 (lower is better) Translates to: RTTGAPNHGHALLVVRNLAFIKI*LPWHWS Trigger: GGACCAGTGCCAAGGCAATCAGATCTTTATGAAAGC...TAGATTTCTCACGACGAGTAATGCATGTCCGTGGTTGGGTGCACCTGTAGTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| 3UTR-3UTR CCA 90 bp | AGAACTACAGGTGCACCCAACCACGGACATGCATTACTCGTCGTGAGAAATCTAGCTCCGTCTGAAAGTTaGCATTCATCCACGAACGTT | + |
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Preference number: 2 (lower is better) Translates to: RTTGAPNHGHALLVVRNLAPSES*HSSTNV Trigger: AACGTTCGTGGATGAATGCCAACTTTCAGACGGAGC...TAGATTTCTCACGACGAGTAATGCATGTCCGTGGTTGGGTGCACCTGTAGTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| 3UTR CAA 90 bp | CTCGTCGTGAGAAATCTAGGTAGGCTAAGTATGATGAGAGAATGTTaGTCACTCCCAAAAATATCTGGAGAGGAAAAATGGAGGGTTGGC | + |
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Preference number: 2 (lower is better) Translates to: LVVRNLGRLSMMREC*SLPKISGEEKWRVG Trigger: GCCAACCCTCCATTTTTCCTCTCCAGATATTTTTGGGAGTGACAAACATTCTCTCATCATACTTAGCCTACCTAGATTTCTCACGACGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| 3UTR-3UTR CAA 90 bp | AGAACTACAGGTGCACCCAACCACGGACATGCATTACTCGTCGTGAGAAATCTAAATGGAGGGTTGGCATaGAGATACATGTGGACAAGC | + |
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Preference number: 3 (lower is better) Translates to: RTTGAPNHGHALLVVRNLNGGLA*RYMWTS Trigger: GCTTGTCCACATGTATCTCAATGCCAACCCTCCATT...TAGATTTCTCACGACGAGTAATGCATGTCCGTGGTTGGGTGCACCTGTAGTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| 3UTR GCA 72 bp | TTTTCATTTCCACTGACCAATAAACAGAACTACAGGTaGACCCAACCACGGACATGCATTACTCGTCGTGAG | + |
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Preference number: 3 (lower is better) Translates to: FSFPLTNKQNYR*TQPRTCITRRE Trigger: CTCACGACGAGTAATGCATGTCCGTGGTTGGGTGCACCTGTAGTTCTGTTTATTGGTCAGTGGAAATGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| 3UTR-3UTR CAA 90 bp | ATATCTGGAGAGGAAAAATGGAGGGTTGGCATTGAGATACATGTGGACAAGCTATGTTTATTTAATCCCTaGGGCAATACATATCCTCAC | + |
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Preference number: 3 (lower is better) Translates to: ISGEEKWRVGIEIHVDKLCLFNP*GNTYPH Trigger: GTGAGGATATGTATTGCCCAAGGGATTAAATAAACA...TAGCTTGTCCACATGTATCTCAATGCCAACCCTCCATTTTTCCTCTCCAGATAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| CDS-3UTR CCA 90 bp | AGAACTACAGGTGCACCCAACCACGGACATGCATTACTCGTCGTGAGAAATCTACCTTCTCCTCTGCCTTaGCCTCGCCGTCCGCCGCGT | + |
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Preference number: 4 (lower is better) Translates to: RTTGAPNHGHALLVVRNLPSPLP*PRRPPR Trigger: ACGCGGCGGACGGCGAGGCCAAGGCAGAGGAGAAGG...TAGATTTCTCACGACGAGTAATGCATGTCCGTGGTTGGGTGCACCTGTAGTTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| CDS-3UTR CCA 90 bp | TCTGGAGAGGAAAAATGGAGGGTTGGCATTGAGATACATGTGGACAAGCTAAGTCGTCCGCCGCGTCCTTaGGCTTCTCCTCCGTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: SGEEKWRVGIEIHVDKLSRPPRP*ASPPCS Trigger: AGAGCACGGAGGAGAAGCCCAAGGACGCGGCGGACG...ACTTAGCTTGTCCACATGTATCTCAATGCCAACCCTCCATTTTTCCTCTCCAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| 3UTR CAA 72 bp | CACAGAAAATACTGCTTTCATAAAGATCTGATTGCCTaGGCACTGGTCCTGTGGGCAGAATCAAACGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: HRKYCFHKDLIA*ALVLWAESNAS Trigger: GGAGGCGTTTGATTCTGCCCACAGGACCAGTGCCAAGGCAATCAGATCTTTATGAAAGCAGTATTTTCTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| 3UTR CAA 72 bp | AGAAATCTAGGTAGGCTAAGTATGATGAGAGAATGTTaGTCACTCCCAAAAATATCTGGAGAGGAAAAATGG | + |
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Preference number: 4 (lower is better) Translates to: RNLGRLSMMREC*SLPKISGEEKW Trigger: CCATTTTTCCTCTCCAGATATTTTTGGGAGTGACAAACATTCTCTCATCATACTTAGCCTACCTAGATTTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| CDS-3UTR CAA 90 bp | GCAGAATCAAACGCCTCCCTCCCCAGCTGCATCGCGGGAGAGATGCTGGGGTTTTCCTTCTCCTCTGCCTaGGCCTCGCCGTCCGCCGCG | + |
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Preference number: 5 (lower is better) Translates to: AESNASLPSCIAGEMLGFSFSSA*ASPSAA Trigger: CGCGGCGGACGGCGAGGCCAAGGCAGAGGAGAAGGA...AAACCCCAGCATCTCTCCCGCGATGCAGCTGGGGAGGGAGGCGTTTGATTCTGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| CDS-3UTR CAA 90 bp | TTGCCTTGGCACTGGTCCTGTGGGCAGAATCAAACGCCTCCCTCCCCAGCTGCATTGGCCGCCGCTGCCTaGTCGGCCTCCTTCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: LPWHWSCGQNQTPPSPAALAAAA*SASFSS Trigger: AGAGGAGAAGGAGGCCGACAAGGCAGCGGCGGCCAA...TGCAGCTGGGGAGGGAGGCGTTTGATTCTGCCCACAGGACCAGTGCCAAGGCAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| CDS-3UTR CAA 90 bp | TCTGGAGAGGAAAAATGGAGGGTTGGCATTGAGATACATGTGGACAAGCTAAGTTTGGGCGCCTCCTCCTaGGCCGCCGCTGCCTTGTCG | + |
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Preference number: 5 (lower is better) Translates to: SGEEKWRVGIEIHVDKLSLGASS*AAAALS Trigger: CGACAAGGCAGCGGCGGCCAAGGAGGAGGCGCCCAA...ACTTAGCTTGTCCACATGTATCTCAATGCCAACCCTCCATTTTTCCTCTCCAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| CDS CAA 90 bp | GCCTCGCCGTCCGCCGCGTCCTTGGGCTTCTCCTCCGTGCTCTCCTaGACCTCGGTGGCGTCGGCGGCCGCCTGGGGTTCGCTCTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: ASPSAASLGFSSVLS*TSVASAAAWGSLSF Trigger: GAAGGAGAGCGAACCCCAGGCGGCCGCCGACGCCACCGAGGTCAAGGAGAGCACGGAGGAGAAGCCCAAGGACGCGGCGGACGGCGAGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| CDS CAA 72 bp | TCCGCCGCGTCCTTGGGCTTCTCCTCCGTGCTCTCCTaGACCTCGGTGGCGTCGGCGGCCGCCTGGGGTTCG | + |
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Preference number: 6 (lower is better) Translates to: SAASLGFSSVLS*TSVASAAAWGS Trigger: CGAACCCCAGGCGGCCGCCGACGCCACCGAGGTCAAGGAGAGCACGGAGGAGAAGCCCAAGGACGCGGCGGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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| CDS CAA 72 bp | TTCTCCTCTGCCTTGGCCTCGCCGTCCGCCGCGTCCTaGGGCTTCTCCTCCGTGCTCTCCTTGACCTCGGTG | + |
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Preference number: 6 (lower is better) Translates to: FSSALASPSAAS*GFSSVLSLTSV Trigger: CACCGAGGTCAAGGAGAGCACGGAGGAGAAGCCCAAGGACGCGGCGGACGGCGAGGCCAAGGCAGAGGAGAA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058845.9 |
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