Pregenerated sensors for BARX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032033Ensembl transcript IDs: ENSMUST00000116615.5
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAGCAAGGAGGGAGAAGAGCAGCCCTTGCTGCAGGCCAGCGGAGCTaGTGTAGCCAGCCCTGCAGCTATCACCCAAGCCTGGGCAATCAG | + |
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Preference number: 1 (lower is better) Translates to: EQGGRRAALAAGQRS*CSQPCSYHPSLGNQ Trigger: CTGATTGCCCAGGCTTGGGTGATAGCTGCAGGGCTGGCTACAGCAGCTCCGCTGGCCTGCAGCAAGGGCTGCTCTTCTCCCTCCTTGCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| 3UTR GCA 90 bp | AGAGCAGCCCTTGCTGCAGGCCAGCGGAGCTGCTGTAGCCAGCCCTaGAGCTATCACCCAAGCCTGGGCAATCAGATCCAAGGCGCTATC | + |
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Preference number: 1 (lower is better) Translates to: RAALAAGQRSCCSQP*SYHPSLGNQIQGAI Trigger: GATAGCGCCTTGGATCTGATTGCCCAGGCTTGGGTGATAGCTGCAGGGCTGGCTACAGCAGCTCCGCTGGCCTGCAGCAAGGGCTGCTCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| 3UTR GCA 90 bp | AAGGAGTCTGGGCAGGTCTCCCGAGCACTTCCACCTACCTCTCTCTaGTTGGCTGACCTGTTGCCCAGAGGAGAGCAAGGAGGGAGAAGA | + |
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Preference number: 1 (lower is better) Translates to: KESGQVSRALPPTSL*LADLLPRGEQGGRR Trigger: TCTTCTCCCTCCTTGCTCTCCTCTGGGCAACAGGTCAGCCAAGCAGAGAGAGGTAGGTGGAAGTGCTCGGGAGACCTGCCCAGACTCCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| 3UTR CCA 90 bp | GCCAGCGGAGCTGCTGTAGCCAGCCCTGCAGCTATCACCCAAGCCTaGGCAATCAGATCCAAGGCGCTATCTCCCTTACAGAAGGGTATC | + |
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Preference number: 1 (lower is better) Translates to: ASGAAVASPAAITQA*AIRSKALSPLQKGI Trigger: GATACCCTTCTGTAAGGGAGATAGCGCCTTGGATCTGATTGCCCAGGCTTGGGTGATAGCTGCAGGGCTGGCTACAGCAGCTCCGCTGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| 3UTR CAA 90 bp | GTCTCCCGAGCACTTCCACCTACCTCTCTCTGCTTGGCTGACCTGTaGCCCAGAGGAGAGCAAGGAGGGAGAAGAGCAGCCCTTGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: VSRALPPTSLCLADL*PRGEQGGRRAALAA Trigger: TGCAGCAAGGGCTGCTCTTCTCCCTCCTTGCTCTCCTCTGGGCAACAGGTCAGCCAAGCAGAGAGAGGTAGGTGGAAGTGCTCGGGAGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| 3UTR CAA 90 bp | GAGTCTGGGCAGGTCTCCCGAGCACTTCCACCTACCTCTCTCTGCTaGGCTGACCTGTTGCCCAGAGGAGAGCAAGGAGGGAGAAGAGCA | + |
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Preference number: 2 (lower is better) Translates to: ESGQVSRALPPTSLC*ADLLPRGEQGGRRA Trigger: TGCTCTTCTCCCTCCTTGCTCTCCTCTGGGCAACAGGTCAGCCAAGCAGAGAGAGGTAGGTGGAAGTGCTCGGGAGACCTGCCCAGACTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| 3UTR-3UTR CAA 90 bp | GGCAGGTCTCCCGAGCACTTCCACCTACCTCTCTCTGCTTGGCTGACCTGTTGCGGAGAAGAGCAGCCCTaGCTGCAGGCCAGCGGAGCT | + |
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Preference number: 3 (lower is better) Translates to: GRSPEHFHLPLSAWLTCCGEEQP*LQASGA Trigger: AGCTCCGCTGGCCTGCAGCAAGGGCTGCTCTTCTCC...GCAACAGGTCAGCCAAGCAGAGAGAGGTAGGTGGAAGTGCTCGGGAGACCTGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| 3UTR GCA 72 bp | CTTGCTGCAGGCCAGCGGAGCTGCTGTAGCCAGCCCTaGAGCTATCACCCAAGCCTGGGCAATCAGATCCAA | + |
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Preference number: 3 (lower is better) Translates to: LAAGQRSCCSQP*SYHPSLGNQIQ Trigger: TTGGATCTGATTGCCCAGGCTTGGGTGATAGCTGCAGGGCTGGCTACAGCAGCTCCGCTGGCCTGCAGCAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| 3UTR GCA 72 bp | GGGCAGGTCTCCCGAGCACTTCCACCTACCTCTCTCTaGTTGGCTGACCTGTTGCCCAGAGGAGAGCAAGGA | + |
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Preference number: 3 (lower is better) Translates to: GQVSRALPPTSL*LADLLPRGEQG Trigger: TCCTTGCTCTCCTCTGGGCAACAGGTCAGCCAAGCAGAGAGAGGTAGGTGGAAGTGCTCGGGAGACCTGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| 3UTR CCA 72 bp | AGGTCTCCCGAGCACTTCCACCTACCTCTCTCTGCTTaGCTGACCTGTTGCCCAGAGGAGAGCAAGGAGGGA | + |
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Preference number: 3 (lower is better) Translates to: RSPEHFHLPLSA*LTCCPEESKEG Trigger: TCCCTCCTTGCTCTCCTCTGGGCAACAGGTCAGCCAAGCAGAGAGAGGTAGGTGGAAGTGCTCGGGAGACCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| 3UTR-3UTR CAA 90 bp | ACAGAAATAAGCGCCGAGTCAGCAAGGAGTCTGGGCAGGTCTCCCGAGCACTTCCCTACCTCTCTCTGCTaGGCTGACCTGTTGCCCAGA | + |
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Preference number: 3 (lower is better) Translates to: TEISAESARSLGRSPEHFPTSLC*ADLLPR Trigger: TCTGGGCAACAGGTCAGCCAAGCAGAGAGAGGTAGG...GAAGTGCTCGGGAGACCTGCCCAGACTCCTTGCTGACTCGGCGCTTATTTCTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| 3UTR CCA 72 bp | GCTGCTGTAGCCAGCCCTGCAGCTATCACCCAAGCCTaGGCAATCAGATCCAAGGCGCTATCTCCCTTACAG | + |
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Preference number: 3 (lower is better) Translates to: AAVASPAAITQA*AIRSKALSPLQ Trigger: CTGTAAGGGAGATAGCGCCTTGGATCTGATTGCCCAGGCTTGGGTGATAGCTGCAGGGCTGGCTACAGCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| 3UTR TCA 72 bp | AAGGCACAGGGGTCTCCAAACAGACAAGCAGGGCTCTaGGATGTCCCTCGTAACTCACAACTCCCTCCAACT | + |
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Preference number: 3 (lower is better) Translates to: KAQGSPNRQAGL*DVPRNSQLPPT Trigger: AGTTGGAGGGAGTTGTGAGTTACGAGGGACATCTCAGAGCCCTGCTTGTCTGTTTGGAGACCCCTGTGCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR GCA 90 bp | TTGCTGCAGGCCAGCGGAGCTGCTGTAGCCAGCCCTGCAGCTATCACCCAAGCCGAACCGGTACAAGAGTaGAGGGGCTTGGGTCGCACC | + |
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Preference number: 4 (lower is better) Translates to: LLQASGAAVASPAAITQAEPVQE*RGLGRT Trigger: GGTGCGACCCAAGCCCCTGCACTCTTGTACCGGTTC...GGCTTGGGTGATAGCTGCAGGGCTGGCTACAGCAGCTCCGCTGGCCTGCAGCAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR TCA 90 bp | ACAGAAATAAGCGCCGAGTCAGCAAGGAGTCTGGGCAGGTCTCCCGAGCACTTCGCCGCCTGGCTGCTTTaGGCTGGCCGGGTGAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: TEISAESARSLGRSPEHFAAWLL*AGRVSS Trigger: TGAGCTCACCCGGCCAGCTCAAAGCAGCCAGGCGGC...GAAGTGCTCGGGAGACCTGCCCAGACTCCTTGCTGACTCGGCGCTTATTTCTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR CCA 90 bp | CAGGTCTCCCGAGCACTTCCACCTACCTCTCTCTGCTTGGCTGACCTGTTGCCCAAGAGTGCAGGGGCTTaGGTCGCACCACCAGCGACG | + |
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Preference number: 4 (lower is better) Translates to: QVSRALPPTSLCLADLLPKSAGA*VAPPAT Trigger: CGTCGCTGGTGGTGCGACCCAAGCCCCTGCACTCTT...GGGCAACAGGTCAGCCAAGCAGAGAGAGGTAGGTGGAAGTGCTCGGGAGACCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR GCA 90 bp | CAGCGGAGCTGCTGTAGCCAGCCCTGCAGCTATCACCCAAGCCTGGGCAATCAGGAGATGACTGTGGGCTaGCGGGTGATCACAGACAGG | + |
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Preference number: 4 (lower is better) Translates to: QRSCCSQPCSYHPSLGNQEMTVG*RVITDR Trigger: CCTGTCTGTGATCACCCGGCAGCCCACAGTCATCTC...CTGATTGCCCAGGCTTGGGTGATAGCTGCAGGGCTGGCTACAGCAGCTCCGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR CCA 90 bp | CAGCGGAGCTGCTGTAGCCAGCCCTGCAGCTATCACCCAAGCCTGGGCAATCAGGGTGCGACTTCTGCGTaGTTTCTTCTGCCTGGGCGT | + |
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Preference number: 4 (lower is better) Translates to: QRSCCSQPCSYHPSLGNQGATSA*FLLPGR Trigger: ACGCCCAGGCAGAAGAAACCACGCAGAAGTCGCACC...CTGATTGCCCAGGCTTGGGTGATAGCTGCAGGGCTGGCTACAGCAGCTCCGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR CCA 90 bp | AGTCTGGGCAGGTCTCCCGAGCACTTCCACCTACCTCTCTCTGCTTGGCTGACCCACGCTTTGGGCTCCTaGGTATCACAGGGCTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: SLGRSPEHFHLPLSAWLTHALGS*VSQGSS Trigger: GGAGGAGCCCTGTGATACCCAGGAGCCCAAAGCGTG...GGTCAGCCAAGCAGAGAGAGGTAGGTGGAAGTGCTCGGGAGACCTGCCCAGACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| 3UTR CAA 72 bp | CAGGTCTCCCGAGCACTTCCACCTACCTCTCTCTGCTaGGCTGACCTGTTGCCCAGAGGAGAGCAAGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: QVSRALPPTSLC*ADLLPRGEQGG Trigger: CCCTCCTTGCTCTCCTCTGGGCAACAGGTCAGCCAAGCAGAGAGAGGTAGGTGGAAGTGCTCGGGAGACCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR GCA 90 bp | CAGGTCTCCCGAGCACTTCCACCTACCTCTCTCTGCTTGGCTGACCTGTTGCCCCTGCGTGGTTTCTTCTaGCTGGGCGTGGGCTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: QVSRALPPTSLCLADLLPLRGFF*LGVGCS Trigger: AGAACAGCCCACGCCCAGGCAGAAGAAACCACGCAG...GGGCAACAGGTCAGCCAAGCAGAGAGAGGTAGGTGGAAGTGCTCGGGAGACCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR CCA 90 bp | ACAGAAATAAGCGCCGAGTCAGCAAGGAGTCTGGGCAGGTCTCCCGAGCACTTCCTGGCTGCTTTGAGCTaGCCGGGTGAGCTCAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: TEISAESARSLGRSPEHFLAALS*PGELSL Trigger: GAGGCTGAGCTCACCCGGCCAGCTCAAAGCAGCCAG...GAAGTGCTCGGGAGACCTGCCCAGACTCCTTGCTGACTCGGCGCTTATTTCTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR TCA 90 bp | CCCGAGCACTTCCACCTACCTCTCTCTGCTTGGCTGACCTGTTGCCCAGAGGAGGGATCTCATCGATCATaGAAGTCTTGTAGCGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: PEHFHLPLSAWLTCCPEEGSHRS*KSCSAA Trigger: GGCGGCGCTACAAGACTTTCATGATCGATGAGATCC...CTCCTCTGGGCAACAGGTCAGCCAAGCAGAGAGAGGTAGGTGGAAGTGCTCGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR GCA 90 bp | AGGCGCAAAGGCACAGGGGTCTCCAAACAGACAAGCAGGGCTCTGAGATGTCCCAGATGGTGCGACTTCTaGGTGGTTTCTTCTGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: RRKGTGVSKQTSRALRCPRWCDF*VVSSAW Trigger: CCAGGCAGAAGAAACCACGCAGAAGTCGCACCATCT...GGGACATCTCAGAGCCCTGCTTGTCTGTTTGGAGACCCCTGTGCCTTTGCGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR TCA 90 bp | CGTCTCATAAAGGCGCAAAGGCACAGGGGTCTCCAAACAGACAAGCAGGGCTCTGTCTTCACTTGCAGCTaGGTGAGTCCCAGAGACTGG | + |
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Preference number: 4 (lower is better) Translates to: RLIKAQRHRGLQTDKQGSVFTCS*VSPRDW Trigger: CCAGTCTCTGGGACTCACTCAGCTGCAAGTGAAGAC...AGAGCCCTGCTTGTCTGTTTGGAGACCCCTGTGCCTTTGCGCCTTTATGAGACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR TCA 90 bp | TTGCTGCAGGCCAGCGGAGCTGCTGTAGCCAGCCCTGCAGCTATCACCCAAGCCAGCTTCAATCTCCTCTaGTGTGGGAATGGAATTCTT | + |
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Preference number: 4 (lower is better) Translates to: LLQASGAAVASPAAITQASFNLL*CGNGIL Trigger: AAGAATTCCATTCCCACATCAGAGGAGATTGAAGCT...GGCTTGGGTGATAGCTGCAGGGCTGGCTACAGCAGCTCCGCTGGCCTGCAGCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR TCA 90 bp | ATCCAAGGCGCTATCTCCCTTACAGAAGGGTATCTGTGCCTAACACAGCCTTGCTCACTTGCAGCTGAGTaGGTCCCAGAGACTGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: IQGAISLTEGYLCLTQPCSLAAE*VPETGP Trigger: TGGCCCAGTCTCTGGGACTCACTCAGCTGCAAGTGA...GCAAGGCTGTGTTAGGCACAGATACCCTTCTGTAAGGGAGATAGCGCCTTGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR TCA 90 bp | ATCCAAGGCGCTATCTCCCTTACAGAAGGGTATCTGTGCCTAACACAGCCTTGCAGCAGCTCCTGGCTCTaGGCCTGGCTGTTCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: IQGAISLTEGYLCLTQPCSSSWL*AWLFIF Trigger: GAAGATGAACAGCCAGGCTCAGAGCCAGGAGCTGCT...GCAAGGCTGTGTTAGGCACAGATACCCTTCTGTAAGGGAGATAGCGCCTTGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR CCA 90 bp | TCCCACACAATCGAGTCTTCATCAAATGCTTCCGATGAAAATGACGCTGGGACGCCGGTGGGAACCAGGTaGGAGATGACTGTGGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SHTIESSSNASDENDAGTPVGTR*EMTVGC Trigger: GCAGCCCACAGTCATCTCCCACCTGGTTCCCACCGG...CGTCCCAGCGTCATTTTCATCGGAAGCATTTGATGAAGACTCGATTGTGTGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR TCA 90 bp | ACAGAAGGGTATCTGTGCCTAACACAGCCTTGCAAGAAGGTTAAGTCCCACACACTGTGGGCTGCCGGGTaGTCACAGACAGGAGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: TEGYLCLTQPCKKVKSHTLWAAG*SQTGED Trigger: ATCCTCTCCTGTCTGTGATCACCCGGCAGCCCACAG...TGTGTGGGACTTAACCTTCTTGCAAGGCTGTGTTAGGCACAGATACCCTTCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR CCA 90 bp | ATCCAAGGCGCTATCTCCCTTACAGAAGGGTATCTGTGCCTAACACAGCCTTGCTCTTCTGCCTGGGCGTaGGCTGTTCTGTCTCTGACT | + |
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Preference number: 4 (lower is better) Translates to: IQGAISLTEGYLCLTQPCSSAWA*AVLSLT Trigger: AGTCAGAGACAGAACAGCCCACGCCCAGGCAGAAGA...GCAAGGCTGTGTTAGGCACAGATACCCTTCTGTAAGGGAGATAGCGCCTTGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR CCA 90 bp | ATCCAAGGCGCTATCTCCCTTACAGAAGGGTATCTGTGCCTAACACAGCCTTGCGTGGTTTCTTCTGCCTaGGCGTGGGCTGTTCTGTCT | + |
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Preference number: 4 (lower is better) Translates to: IQGAISLTEGYLCLTQPCVVSSA*AWAVLS Trigger: AGACAGAACAGCCCACGCCCAGGCAGAAGAAACCAC...GCAAGGCTGTGTTAGGCACAGATACCCTTCTGTAAGGGAGATAGCGCCTTGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR CCA 90 bp | GGGTATCTGTGCCTAACACAGCCTTGCAAGAAGGTTAAGTCCCACACAATCGAGGTGAGTCCCAGAGACTaGGCCAAGTCCAACCTGTCT | + |
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Preference number: 4 (lower is better) Translates to: GYLCLTQPCKKVKSHTIEVSPRD*AKSNLS Trigger: AGACAGGTTGGACTTGGCCCAGTCTCTGGGACTCAC...CTCGATTGTGTGGGACTTAACCTTCTTGCAAGGCTGTGTTAGGCACAGATACCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR CCA 90 bp | GCTCCTCTACCCACGTTACTAGTCTTTAGAGGTCTTCTCTCCCTCATTCTCCTTGGACAAGGCACGCTTTaGGCTCCTGGGTATCACAGG | + |
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Preference number: 4 (lower is better) Translates to: APLPTLLVFRGLLSLILLGQGTL*APGYHR Trigger: CCTGTGATACCCAGGAGCCCAAAGCGTGCCTTGTCC...AAGGAGAATGAGGGAGAGAAGACCTCTAAAGACTAGTAACGTGGGTAGAGGAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR TCA 90 bp | AGAAGTGCTCCTCTACCCACGTTACTAGTCTTTAGAGGTCTTCTCTCCCTCATTAACTCCTGGGGCTGGTaGATAGGTTCTGCCACCTCC | + |
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Preference number: 4 (lower is better) Translates to: RSAPLPTLLVFRGLLSLINSWGW*IGSATS Trigger: GGAGGTGGCAGAACCTATTCACCAGCCCCAGGAGTT...AATGAGGGAGAGAAGACCTCTAAAGACTAGTAACGTGGGTAGAGGAGCACTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR GCA 90 bp | AGAAGTGCTCCTCTACCCACGTTACTAGTCTTTAGAGGTCTTCTCTCCCTCATTCTGTCTCTGACTCGCTaGTGGCTAACGCCTCACCAC | + |
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Preference number: 4 (lower is better) Translates to: RSAPLPTLLVFRGLLSLILSLTR*WLTPHH Trigger: GTGGTGAGGCGTTAGCCAGCAGCGAGTCAGAGACAG...AATGAGGGAGAGAAGACCTCTAAAGACTAGTAACGTGGGTAGAGGAGCACTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR CCA 90 bp | AGAAGTGCTCCTCTACCCACGTTACTAGTCTTTAGAGGTCTTCTCTCCCTCATTTCTCTGACTCGCTGCTaGCTAACGCCTCACCACCAG | + |
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Preference number: 4 (lower is better) Translates to: RSAPLPTLLVFRGLLSLISLTRC*LTPHHQ Trigger: CTGGTGGTGAGGCGTTAGCCAGCAGCGAGTCAGAGA...AATGAGGGAGAGAAGACCTCTAAAGACTAGTAACGTGGGTAGAGGAGCACTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR GCA 90 bp | ACAGAAATAAGCGCCGAGTCAGCAAGGAGTCTGGGCAGGTCTCCCGAGCACTTCTCTTCCATTTCATCCTaGGATTCTGATACCAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: TEISAESARSLGRSPEHFSSISS*DSDTKS Trigger: AGACTTGGTATCAGAATCGCAGGATGAAATGGAAGA...GAAGTGCTCGGGAGACCTGCCCAGACTCCTTGCTGACTCGGCGCTTATTTCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR GCA 90 bp | ATCCAAGGCGCTATCTCCCTTACAGAAGGGTATCTGTGCCTAACACAGCCTTGCCTTAGGTTTTGTGGGTaGTTCCTGTCCACCTTTAAG | + |
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Preference number: 4 (lower is better) Translates to: IQGAISLTEGYLCLTQPCLRFCG*FLSTFK Trigger: CTTAAAGGTGGACAGGAAGCACCCACAAAACCTAAG...GCAAGGCTGTGTTAGGCACAGATACCCTTCTGTAAGGGAGATAGCGCCTTGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR CCA 90 bp | ACAGAAGGGTATCTGTGCCTAACACAGCCTTGCAAGAAGGTTAAGTCCCACACACAAGTCCAACCTGTCTaGGGTAGACAAATACTTCTG | + |
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Preference number: 4 (lower is better) Translates to: TEGYLCLTQPCKKVKSHTQVQPV*GRQILL Trigger: CAGAAGTATTTGTCTACCCCAGACAGGTTGGACTTG...TGTGTGGGACTTAACCTTCTTGCAAGGCTGTGTTAGGCACAGATACCCTTCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR CCA 90 bp | AAGGTTAAGTCCCACACAATCGAGTCTTCATCAAATGCTTCCGATGAAAATGACAGTCGCAGGTCTCCTTaGAGAGGATCTCATCGATCA | + |
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Preference number: 4 (lower is better) Translates to: KVKSHTIESSSNASDENDSRRSP*RGSHRS Trigger: TGATCGATGAGATCCTCTCCAAGGAGACCTGCGACT...GTCATTTTCATCGGAAGCATTTGATGAAGACTCGATTGTGTGGGACTTAACCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR CAA 90 bp | CCCGAGCACTTCCACCTACCTCTCTCTGCTTGGCTGACCTGTTGCCCAGAGGAGCGCCGCCTGGCTGCTTaGAGCTGGCCGGGTGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: PEHFHLPLSAWLTCCPEERRLAA*SWPGEL Trigger: GAGCTCACCCGGCCAGCTCAAAGCAGCCAGGCGGCG...CTCCTCTGGGCAACAGGTCAGCCAAGCAGAGAGAGGTAGGTGGAAGTGCTCGGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS GCA 90 bp | GTGAGTCCCGAGCCGGTGGGAACCAGGTGGGAGATGACTGTGGGCTaGCGGGTGATCACAGACAGGAGAGGATATGCCCGTAGGGAAGGG | + |
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Preference number: 5 (lower is better) Translates to: VSPEPVGTRWEMTVG*RVITDRRGYARREG Trigger: CCCTTCCCTACGGGCATATCCTCTCCTGTCTGTGATCACCCGGCAGCCCACAGTCATCTCCCACCTGGTTCCCACCGGCTCGGGACTCAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS CCA 90 bp | TGGCGAGTTAACACTGGGGTGAGTCCCGAGCCGGTGGGAACCAGGTaGGAGATGACTGTGGGCTGCCGGGTGATCACAGACAGGAGAGGA | + |
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Preference number: 5 (lower is better) Translates to: WRVNTGVSPEPVGTR*EMTVGCRVITDRRG Trigger: TCCTCTCCTGTCTGTGATCACCCGGCAGCCCACAGTCATCTCCCACCTGGTTCCCACCGGCTCGGGACTCACCCCAGTGTTAACTCGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS CCA 90 bp | GATATGCCCGTAGGGAAGGGGAACCGGTACAAGAGTGCAGGGGCTTaGGTCGCACCACCAGCGACGGGCACACAGAGTAGAGGGAAAGTT | + |
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Preference number: 5 (lower is better) Translates to: DMPVGKGNRYKSAGA*VAPPATGTQSRGKV Trigger: AACTTTCCCTCTACTCTGTGTGCCCGTCGCTGGTGGTGCGACCCAAGCCCCTGCACTCTTGTACCGGTTCCCCTTCCCTACGGGCATATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS CCA 90 bp | ATAGGTTCTGCCACCTCCAAGGGGACAAGGCACGCTTTGGGCTCCTaGGTATCACAGGGCTCCTCCTGTCTCTCCGAGGATTCCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: IGSATSKGTRHALGS*VSQGSSCLSEDSSS Trigger: GCTGCTGGAATCCTCGGAGAGACAGGAGGAGCCCTGTGATACCCAGGAGCCCAAAGCGTGCCTTGTCCCCTTGGAGGTGGCAGAACCTAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS GCA 90 bp | AGCTGCAGCTCGGTGAAGATGGTGCGACTTCTGCGTGGTTTCTTCTaGCTGGGCGTGGGCTGTTCTGTCTCTGACTCGCTGCTGGCTAAC | + |
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Preference number: 5 (lower is better) Translates to: SCSSVKMVRLLRGFF*LGVGCSVSDSLLAN Trigger: GTTAGCCAGCAGCGAGTCAGAGACAGAACAGCCCACGCCCAGGCAGAAGAAACCACGCAGAAGTCGCACCATCTTCACCGAGCTGCAGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS-3UTR CAA 90 bp | ACAGAAGGGTATCTGTGCCTAACACAGCCTTGCAAGAAGGTTAAGTCCCACACAGGGACAAGGCACGCTTaGGGCTCCTGGGTATCACAG | + |
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Preference number: 5 (lower is better) Translates to: TEGYLCLTQPCKKVKSHTGTRHA*GSWVSQ Trigger: CTGTGATACCCAGGAGCCCAAAGCGTGCCTTGTCCC...TGTGTGGGACTTAACCTTCTTGCAAGGCTGTGTTAGGCACAGATACCCTTCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS TCA 90 bp | GCTCTGAGCCTGGCTGTTCATCTTCTCTTCAGCTTCAATCTCCTCTaGTGTGGGAATGGAATTCTTCTTAGGGCGCCCCTTAGGTTTTGT | + |
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Preference number: 5 (lower is better) Translates to: ALSLAVHLLFSFNLL*CGNGILLRAPLRFC Trigger: ACAAAACCTAAGGGGCGCCCTAAGAAGAATTCCATTCCCACATCAGAGGAGATTGAAGCTGAAGAGAAGATGAACAGCCAGGCTCAGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS GCA 90 bp | TGTGGGAATGGAATTCTTCTTAGGGCGCCCCTTAGGTTTTGTGGGTaGTTCCTGTCCACCTTTAAGGACCATCTTCTTCCATTTCATCCT | + |
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Preference number: 5 (lower is better) Translates to: CGNGILLRAPLRFCG*FLSTFKDHLLPFHP Trigger: AGGATGAAATGGAAGAAGATGGTCCTTAAAGGTGGACAGGAAGCACCCACAAAACCTAAGGGGCGCCCTAAGAAGAATTCCATTCCCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS GCA 72 bp | GGATATGCCCGTAGGGAAGGGGAACCGGTACAAGAGTaGAGGGGCTTGGGTCGCACCACCAGCGACGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: GYARREGEPVQE*RGLGRTTSDGH Trigger: GTGCCCGTCGCTGGTGGTGCGACCCAAGCCCCTGCACTCTTGTACCGGTTCCCCTTCCCTACGGGCATATCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS CCA 72 bp | GCCTGGGCGTGGGCTGTTCTGTCTCTGACTCGCTGCTaGCTAACGCCTCACCACCAGGGGTCTCAGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: AWAWAVLSLTRC*LTPHHQGSQQQ Trigger: CTGCTGCTGAGACCCCTGGTGGTGAGGCGTTAGCCAGCAGCGAGTCAGAGACAGAACAGCCCACGCCCAGGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS GCA 72 bp | TCTGCCTGGGCGTGGGCTGTTCTGTCTCTGACTCGCTaGTGGCTAACGCCTCACCACCAGGGGTCTCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: SAWAWAVLSLTR*WLTPHHQGSQQ Trigger: CTGCTGAGACCCCTGGTGGTGAGGCGTTAGCCAGCAGCGAGTCAGAGACAGAACAGCCCACGCCCAGGCAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS CCA 72 bp | AACACTGGGGTGAGTCCCGAGCCGGTGGGAACCAGGTaGGAGATGACTGTGGGCTGCCGGGTGATCACAGAC | + |
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Preference number: 6 (lower is better) Translates to: NTGVSPEPVGTR*EMTVGCRVITD Trigger: GTCTGTGATCACCCGGCAGCCCACAGTCATCTCCCACCTGGTTCCCACCGGCTCGGGACTCACCCCAGTGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS GCA 72 bp | GAGCCGGTGGGAACCAGGTGGGAGATGACTGTGGGCTaGCGGGTGATCACAGACAGGAGAGGATATGCCCGT | + |
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Preference number: 6 (lower is better) Translates to: EPVGTRWEMTVG*RVITDRRGYAR Trigger: ACGGGCATATCCTCTCCTGTCTGTGATCACCCGGCAGCCCACAGTCATCTCCCACCTGGTTCCCACCGGCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS CCA 72 bp | GTAGGGAAGGGGAACCGGTACAAGAGTGCAGGGGCTTaGGTCGCACCACCAGCGACGGGCACACAGAGTAGA | + |
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Preference number: 6 (lower is better) Translates to: VGKGNRYKSAGA*VAPPATGTQSR Trigger: TCTACTCTGTGTGCCCGTCGCTGGTGGTGCGACCCAAGCCCCTGCACTCTTGTACCGGTTCCCCTTCCCTAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS GCA 72 bp | TCGGTGAAGATGGTGCGACTTCTGCGTGGTTTCTTCTaGCTGGGCGTGGGCTGTTCTGTCTCTGACTCGCTG | + |
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Preference number: 6 (lower is better) Translates to: SVKMVRLLRGFF*LGVGCSVSDSL Trigger: CAGCGAGTCAGAGACAGAACAGCCCACGCCCAGGCAGAAGAAACCACGCAGAAGTCGCACCATCTTCACCGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS TCA 72 bp | GGTTCAGAGGAAGCTTCTGATAACTCCTGGGGCTGGTaGATAGGTTCTGCCACCTCCAAGGGGACAAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: GSEEASDNSWGW*IGSATSKGTRH Trigger: GTGCCTTGTCCCCTTGGAGGTGGCAGAACCTATTCACCAGCCCCAGGAGTTATCAGAAGCTTCCTCTGAACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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| CDS GCA 72 bp | GGAATTCTTCTTAGGGCGCCCCTTAGGTTTTGTGGGTaGTTCCTGTCCACCTTTAAGGACCATCTTCTTCCA | + |
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Preference number: 6 (lower is better) Translates to: GILLRAPLRFCG*FLSTFKDHLLP Trigger: TGGAAGAAGATGGTCCTTAAAGGTGGACAGGAAGCACCCACAAAACCTAAGGGGCGCCCTAAGAAGAATTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116615.5 |
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