Pregenerated sensors for BARX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021381Ensembl transcript IDs: ENSMUST00000021813.5
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GACGACTCTGCTCTGCAGGGCAGGGCCATAGGGACCTGCACCCGGTaGCGGGGTCCCCAAGGCGCGGAAGTAAGTGTGTGCCTGCCGGTG | + |
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Preference number: 1 (lower is better) Translates to: DDSALQGRAIGTCTR*RGPQGAEVSVCLPV Trigger: CACCGGCAGGCACACACTTACTTCCGCGCCTTGGGGACCCCGCCACCGGGTGCAGGTCCCTATGGCCCTGCCCTGCAGAGCAGAGTCGTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| 3UTR GCA 90 bp | TCTGCTAGAGACGACTCTGCTCTGCAGGGCAGGGCCATAGGGACCTaGACCCGGTGGCGGGGTCCCCAAGGCGCGGAAGTAAGTGTGTGC | + |
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Preference number: 1 (lower is better) Translates to: SARDDSALQGRAIGT*TRWRGPQGAEVSVC Trigger: GCACACACTTACTTCCGCGCCTTGGGGACCCCGCCACCGGGTGCAGGTCCCTATGGCCCTGCCCTGCAGAGCAGAGTCGTCTCTAGCAGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| 3UTR TCA 90 bp | GGCCACGCTGGACACAAGTCTCCCAGACTGGGGACAGAAGCTCGCTaGCACCTGGGATTGGCTTCCGGGCCTGTGTCCTTCCTTGTCTGG | + |
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Preference number: 1 (lower is better) Translates to: GHAGHKSPRLGTEAR*HLGLASGPVSFLVW Trigger: CCAGACAAGGAAGGACACAGGCCCGGAAGCCAATCCCAGGTGTCAGCGAGCTTCTGTCCCCAGTCTGGGAGACTTGTGTCCAGCGTGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| 3UTR CCA 90 bp | GAAAGACCAGAAGCTTCGGCCACGCTGGACACAAGTCTCCCAGACTaGGGACAGAAGCTCGCTGACACCTGGGATTGGCTTCCGGGCCTG | + |
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Preference number: 1 (lower is better) Translates to: ERPEASATLDTSLPD*GQKLADTWDWLPGL Trigger: CAGGCCCGGAAGCCAATCCCAGGTGTCAGCGAGCTTCTGTCCCCAGTCTGGGAGACTTGTGTCCAGCGTGGCCGAAGCTTCTGGTCTTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| 3UTR CCA 90 bp | AAGAGTCACCGTCTTTGTAAGAGAGGGGTAGAAGCCTCAGCGACATaGGGAGGCCAGGTATCAGCTGATCTGCTAGAGACGACTCTGCTC | + |
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Preference number: 1 (lower is better) Translates to: KSHRLCKRGVEASAT*GGQVSADLLETTLL Trigger: GAGCAGAGTCGTCTCTAGCAGATCAGCTGATACCTGGCCTCCCCATGTCGCTGAGGCTTCTACCCCTCTCTTACAAAGACGGTGACTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| 3UTR-3UTR TCA 90 bp | GCAGGGCAGGGCCATAGGGACCTGCACCCGGTGGCGGGGTCCCCAAGGCGCGGAGGAGCGGGGCGTGAATaGGCGTGGAGCGCCGCACAC | + |
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Preference number: 2 (lower is better) Translates to: AGQGHRDLHPVAGSPRRGGAGRE*AWSAAH Trigger: GTGTGCGGCGCTCCACGCTCATTCACGCCCCGCTCC...TCCGCGCCTTGGGGACCCCGCCACCGGGTGCAGGTCCCTATGGCCCTGCCCTGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| 3UTR-3UTR CCA 90 bp | CTGCAGGGCAGGGCCATAGGGACCTGCACCCGGTGGCGGGGTCCCCAAGGCGCGACAAGTCTCCCAGACTaGGGACAGAAGCTCGCTGAC | + |
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Preference number: 2 (lower is better) Translates to: LQGRAIGTCTRWRGPQGATSLPD*GQKLAD Trigger: GTCAGCGAGCTTCTGTCCCCAGTCTGGGAGACTTGT...CGCGCCTTGGGGACCCCGCCACCGGGTGCAGGTCCCTATGGCCCTGCCCTGCAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| 3UTR GCA 72 bp | GACGACTCTGCTCTGCAGGGCAGGGCCATAGGGACCTaGACCCGGTGGCGGGGTCCCCAAGGCGCGGAAGTA | + |
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Preference number: 3 (lower is better) Translates to: DDSALQGRAIGT*TRWRGPQGAEV Trigger: TACTTCCGCGCCTTGGGGACCCCGCCACCGGGTGCAGGTCCCTATGGCCCTGCCCTGCAGAGCAGAGTCGTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| 3UTR CCA 72 bp | GCTCTGCAGGGCAGGGCCATAGGGACCTGCACCCGGTaGCGGGGTCCCCAAGGCGCGGAAGTAAGTGTGTGC | + |
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Preference number: 3 (lower is better) Translates to: ALQGRAIGTCTR*RGPQGAEVSVC Trigger: GCACACACTTACTTCCGCGCCTTGGGGACCCCGCCACCGGGTGCAGGTCCCTATGGCCCTGCCCTGCAGAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| 3UTR CCA 72 bp | CCAGACTGGGGACAGAAGCTCGCTGACACCTGGGATTaGCTTCCGGGCCTGTGTCCTTCCTTGTCTGGCCCT | + |
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Preference number: 3 (lower is better) Translates to: PDWGQKLADTWD*LPGLCPSLSGP Trigger: AGGGCCAGACAAGGAAGGACACAGGCCCGGAAGCCAATCCCAGGTGTCAGCGAGCTTCTGTCCCCAGTCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| 3UTR TCA 72 bp | AGAAGCCTCAGCGACATGGGGAGGCCAGGTATCAGCTaGTCTGCTAGAGACGACTCTGCTCTGCAGGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: RSLSDMGRPGIS*SARDDSALQGR Trigger: CCTGCCCTGCAGAGCAGAGTCGTCTCTAGCAGATCAGCTGATACCTGGCCTCCCCATGTCGCTGAGGCTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| 3UTR CCA 72 bp | GAAGCTTCGGCCACGCTGGACACAAGTCTCCCAGACTaGGGACAGAAGCTCGCTGACACCTGGGATTGGCTT | + |
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Preference number: 3 (lower is better) Translates to: EASATLDTSLPD*GQKLADTWDWL Trigger: AAGCCAATCCCAGGTGTCAGCGAGCTTCTGTCCCCAGTCTGGGAGACTTGTGTCCAGCGTGGCCGAAGCTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| 3UTR CCA 72 bp | CGTCTTTGTAAGAGAGGGGTAGAAGCCTCAGCGACATaGGGAGGCCAGGTATCAGCTGATCTGCTAGAGACG | + |
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Preference number: 3 (lower is better) Translates to: RLCKRGVEASAT*GGQVSADLLET Trigger: CGTCTCTAGCAGATCAGCTGATACCTGGCCTCCCCATGTCGCTGAGGCTTCTACCCCTCTCTTACAAAGACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| 3UTR CCA 72 bp | CTGGGATTGGCTTCCGGGCCTGTGTCCTTCCTTGTCTaGCCCTTAATTGTCCGCATTCAAAGTAGTAATGAA | + |
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Preference number: 3 (lower is better) Translates to: LGLASGPVSFLV*PLIVRIQSSNE Trigger: TTCATTACTACTTTGAATGCGGACAATTAAGGGCCAGACAAGGAAGGACACAGGCCCGGAAGCCAATCCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR CCA 90 bp | GCAGGGCAGGGCCATAGGGACCTGCACCCGGTGGCGGGGTCCCCAAGGCGCGGAACCGCCAGGTGGCTGTaGAAGGGCCGGGCGGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: AGQGHRDLHPVAGSPRRGTARWL*KGRAAS Trigger: GCTGGCCGCCCGGCCCTTCCACAGCCACCTGGCGGT...TCCGCGCCTTGGGGACCCCGCCACCGGGTGCAGGTCCCTATGGCCCTGCCCTGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR CCA 90 bp | GCAGGGCAGGGCCATAGGGACCTGCACCCGGTGGCGGGGTCCCCAAGGCGCGGAGCCGTCCCTTGGGCTTaGTGGGGGACTCCAGGCCGC | + |
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Preference number: 4 (lower is better) Translates to: AGQGHRDLHPVAGSPRRGAVPWA*WGTPGR Trigger: GCGGCCTGGAGTCCCCCACCAAGCCCAAGGGACGGC...TCCGCGCCTTGGGGACCCCGCCACCGGGTGCAGGTCCCTATGGCCCTGCCCTGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR TCA 90 bp | GGCAGGGCCATAGGGACCTGCACCCGGTGGCGGGGTCCCCAAGGCGCGGAAGTACACGCTCTTGCTCCGTaGGCTGCTCGCTCGTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: GRAIGTCTRWRGPQGAEVHALAP*AARSWG Trigger: TCCCCACGAGCGAGCAGCTCACGGAGCAAGAGCGTG...TACTTCCGCGCCTTGGGGACCCCGCCACCGGGTGCAGGTCCCTATGGCCCTGCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR GCA 90 bp | CTGCAGGGCAGGGCCATAGGGACCTGCACCCGGTGGCGGGGTCCCCAAGGCGCGTTGAACACTGCGGCCTaGTCAGCCTTCAGCACCGCC | + |
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Preference number: 4 (lower is better) Translates to: LQGRAIGTCTRWRGPQGALNTAA*SAFSTA Trigger: GGCGGTGCTGAAGGCTGAGCAGGCCGCAGTGTTCAA...CGCGCCTTGGGGACCCCGCCACCGGGTGCAGGTCCCTATGGCCCTGCCCTGCAG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR CCA 90 bp | CAGGGCCATAGGGACCTGCACCCGGTGGCGGGGTCCCCAAGGCGCGGAAGTAAGGCCGAGCGGCGCCAGTaGGAACTTGAACACTGCGGC | + |
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Preference number: 4 (lower is better) Translates to: QGHRDLHPVAGSPRRGSKAERRQ*ELEHCG Trigger: GCCGCAGTGTTCAAGTTCCCACTGGCGCCGCTCGGC...CTTACTTCCGCGCCTTGGGGACCCCGCCACCGGGTGCAGGTCCCTATGGCCCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR TCA 90 bp | CAGGGCCATAGGGACCTGCACCCGGTGGCGGGGTCCCCAAGGCGCGGAAGTAAGGCGCCAGTGGGAACTTaGACACTGCGGCCTGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: QGHRDLHPVAGSPRRGSKAPVGT*TLRPAQ Trigger: CTGAGCAGGCCGCAGTGTTCAAGTTCCCACTGGCGC...CTTACTTCCGCGCCTTGGGGACCCCGCCACCGGGTGCAGGTCCCTATGGCCCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR GCA 90 bp | CTCCCAGACTGGGGACAGAAGCTCGCTGACACCTGGGATTGGCTTCCGGGCCTGAGCTTCCCGCGGAGTTaGAGCTCCAGCGGCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: LPDWGQKLADTWDWLPGLSFPRS*SSSGRC Trigger: GCACCTGCCGCTGGAGCTGCAACTCCGCGGGAAGCT...CAGGCCCGGAAGCCAATCCCAGGTGTCAGCGAGCTTCTGTCCCCAGTCTGGGAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR CCA 90 bp | CAGGGCCATAGGGACCTGCACCCGGTGGCGGGGTCCCCAAGGCGCGGAAGTAAGGTCTTCACCTGTAACTaGCTCAGGCCCAGGGACTCA | + |
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Preference number: 4 (lower is better) Translates to: QGHRDLHPVAGSPRRGSKVFTCN*LRPRDS Trigger: TGAGTCCCTGGGCCTGAGCCAGTTACAGGTGAAGAC...CTTACTTCCGCGCCTTGGGGACCCCGCCACCGGGTGCAGGTCCCTATGGCCCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR GCA 90 bp | CTCCCAGACTGGGGACAGAAGCTCGCTGACACCTGGGATTGGCTTCCGGGCCTGTCTTGCTCCGTGAGCTaGTCGCTCGTGGGGATGGAG | + |
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Preference number: 4 (lower is better) Translates to: LPDWGQKLADTWDWLPGLSCSVS*SLVGME Trigger: CTCCATCCCCACGAGCGAGCAGCTCACGGAGCAAGA...CAGGCCCGGAAGCCAATCCCAGGTGTCAGCGAGCTTCTGTCCCCAGTCTGGGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR GCA 90 bp | CTCCCAGACTGGGGACAGAAGCTCGCTGACACCTGGGATTGGCTTCCGGGCCTGTCCTTGGCACGCTCTTaGTCCGTGAGCTGCTCGCTC | + |
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Preference number: 4 (lower is better) Translates to: LPDWGQKLADTWDWLPGLSLARS*SVSCSL Trigger: GAGCGAGCAGCTCACGGAGCAAGAGCGTGCCAAGGA...CAGGCCCGGAAGCCAATCCCAGGTGTCAGCGAGCTTCTGTCCCCAGTCTGGGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR CCA 90 bp | GACAGAAGCTCGCTGACACCTGGGATTGGCTTCCGGGCCTGTGTCCTTCCTTGTTTCAGCACCGCCAGGTaGCTGTGGAAGGGCCGGGCG | + |
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Preference number: 4 (lower is better) Translates to: DRSSLTPGIGFRACVLPCFSTAR*LWKGRA Trigger: CGCCCGGCCCTTCCACAGCCACCTGGCGGTGCTGAA...ACAAGGAAGGACACAGGCCCGGAAGCCAATCCCAGGTGTCAGCGAGCTTCTGTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR CCA 90 bp | GCCTCAGCGACATGGGGAGGCCAGGTATCAGCTGATCTGCTAGAGACGACTCTGGTCCCTTGGGCTTGGTaGGGGACTCCAGGCCGCCAC | + |
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Preference number: 4 (lower is better) Translates to: ASATWGGQVSADLLETTLVPWAW*GTPGRH Trigger: GTGGCGGCCTGGAGTCCCCCACCAAGCCCAAGGGAC...CAGAGTCGTCTCTAGCAGATCAGCTGATACCTGGCCTCCCCATGTCGCTGAGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR CCA 90 bp | GACAGAAGCTCGCTGACACCTGGGATTGGCTTCCGGGCCTGTGTCCTTCCTTGTGCTCGCTCGTGGGGATaGAGTTCTTCTTGGGCCGTC | + |
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Preference number: 4 (lower is better) Translates to: DRSSLTPGIGFRACVLPCARSWG*SSSWAV Trigger: GACGGCCCAAGAAGAACTCCATCCCCACGAGCGAGC...ACAAGGAAGGACACAGGCCCGGAAGCCAATCCCAGGTGTCAGCGAGCTTCTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR CCA 90 bp | GGATTGGCTTCCGGGCCTGTGTCCTTCCTTGTCTGGCCCTTAATTGTCCGCATTGCCCGGCGTCTCCGCTaGCTTCTCTGTCTCCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: GLASGPVSFLVWPLIVRIARRLR*LLCLLG Trigger: GCCAAGGAGACAGAGAAGCCAGCGGAGACGCCGGGC...AATGCGGACAATTAAGGGCCAGACAAGGAAGGACACAGGCCCGGAAGCCAATCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR GCA 90 bp | AGAGGGGTAGAAGCCTCAGCGACATGGGGAGGCCAGGTATCAGCTGATCTGCTATGGGAACTTGAACACTaGGGCCTGCTCAGCCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: RGVEASATWGGQVSADLLWELEH*GLLSLQ Trigger: CTGAAGGCTGAGCAGGCCGCAGTGTTCAAGTTCCCA...TAGCAGATCAGCTGATACCTGGCCTCCCCATGTCGCTGAGGCTTCTACCCCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR GCA 90 bp | AGAGGGGTAGAAGCCTCAGCGACATGGGGAGGCCAGGTATCAGCTGATCTGCTATCCAGCCCCATCAGCTaGAGCTCAGTGAATACGGTG | + |
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Preference number: 4 (lower is better) Translates to: RGVEASATWGGQVSADLLSSPIS*SSVNTV Trigger: CACCGTATTCACTGAGCTGCAGCTGATGGGGCTGGA...TAGCAGATCAGCTGATACCTGGCCTCCCCATGTCGCTGAGGCTTCTACCCCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR GCA 90 bp | CACCTGGGATTGGCTTCCGGGCCTGTGTCCTTCCTTGTCTGGCCCTTAATTGTCGTAGAGAGGTACTTCTaGTTCTCGAAGCGTTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: HLGLASGPVSFLVWPLIVVERYF*FSKRFS Trigger: GGAGAAACGCTTCGAGAAGCAGAAGTACCTCTCTAC...GACAATTAAGGGCCAGACAAGGAAGGACACAGGCCCGGAAGCCAATCCCAGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS GCA 90 bp | CAGCTTCCCGCGGAGTTGCAGCTCCAGCGGCAGGTGCGATGCGCCTaGGGGGCCGGGCATCCCAGGCCCGGCGGCCAACAACGCCGAGCC | + |
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Preference number: 5 (lower is better) Translates to: QLPAELQLQRQVRCA*GAGHPRPGGQQRRA Trigger: GGCTCGGCGTTGTTGGCCGCCGGGCCTGGGATGCCCGGCCCCGCAGGCGCATCGCACCTGCCGCTGGAGCTGCAACTCCGCGGGAAGCTG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS GCA 90 bp | CCGGAGCAGCCGAGCGGCGCCAGTGGGAACTTGAACACTGCGGCCTaGTCAGCCTTCAGCACCGCCAGGTGGCTGTGGAAGGGCCGGGCG | + |
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Preference number: 5 (lower is better) Translates to: PEQPSGASGNLNTAA*SAFSTARWLWKGRA Trigger: CGCCCGGCCCTTCCACAGCCACCTGGCGGTGCTGAAGGCTGAGCAGGCCGCAGTGTTCAAGTTCCCACTGGCGCCGCTCGGCTGCTCCGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS GCA 90 bp | GCGCCAGGTTCACCAGAGCCAGCTGCTTCCAGCTTCCCGCGGAGTTaGAGCTCCAGCGGCAGGTGCGATGCGCCTGCGGGGCCGGGCATC | + |
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Preference number: 5 (lower is better) Translates to: APGSPEPAASSFPRS*SSSGRCDAPAGPGI Trigger: GATGCCCGGCCCCGCAGGCGCATCGCACCTGCCGCTGGAGCTGCAACTCCGCGGGAAGCTGGAAGCAGCTGGCTCTGGTGAACCTGGCGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR CAA 90 bp | CTGCAGGGCAGGGCCATAGGGACCTGCACCCGGTGGCGGGGTCCCCAAGGCGCGCTCCTTGGCACGCTCTaGCTCCGTGAGCTGCTCGCT | + |
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Preference number: 5 (lower is better) Translates to: LQGRAIGTCTRWRGPQGALLGTL*LRELLA Trigger: AGCGAGCAGCTCACGGAGCAAGAGCGTGCCAAGGAG...CGCGCCTTGGGGACCCCGCCACCGGGTGCAGGTCCCTATGGCCCTGCCCTGCAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS TCA 90 bp | ACGCCGAGCCCAGCCCGGAGCAGCCGAGCGGCGCCAGTGGGAACTTaGACACTGCGGCCTGCTCAGCCTTCAGCACCGCCAGGTGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: TPSPARSSRAAPVGT*TLRPAQPSAPPGGC Trigger: ACAGCCACCTGGCGGTGCTGAAGGCTGAGCAGGCCGCAGTGTTCAAGTTCCCACTGGCGCCGCTCGGCTGCTCCGGGCTGGGCTCGGCGT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS GCA 90 bp | GCCCAGCCCGGAGCAGCCGAGCGGCGCCAGTGGGAACTTGAACACTaGGGCCTGCTCAGCCTTCAGCACCGCCAGGTGGCTGTGGAAGGG | + |
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Preference number: 5 (lower is better) Translates to: AQPGAAERRQWELEH*GLLSLQHRQVAVEG Trigger: CCCTTCCACAGCCACCTGGCGGTGCTGAAGGCTGAGCAGGCCGCAGTGTTCAAGTTCCCACTGGCGCCGCTCGGCTGCTCCGGGCTGGGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS CCA 90 bp | GGCCAACAACGCCGAGCCCAGCCCGGAGCAGCCGAGCGGCGCCAGTaGGAACTTGAACACTGCGGCCTGCTCAGCCTTCAGCACCGCCAG | + |
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Preference number: 5 (lower is better) Translates to: GQQRRAQPGAAERRQ*ELEHCGLLSLQHRQ Trigger: CTGGCGGTGCTGAAGGCTGAGCAGGCCGCAGTGTTCAAGTTCCCACTGGCGCCGCTCGGCTGCTCCGGGCTGGGCTCGGCGTTGTTGGCC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS GCA 90 bp | CCGGCGTCCTTTCTTGGCTTTCGCGCCAGGTTCACCAGAGCCAGCTaGTTCCAGCTTCCCGCGGAGTTGCAGCTCCAGCGGCAGGTGCGA | + |
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Preference number: 5 (lower is better) Translates to: PASFLGFRARFTRAS*FQLPAELQLQRQVR Trigger: TCGCACCTGCCGCTGGAGCTGCAACTCCGCGGGAAGCTGGAAGCAGCTGGCTCTGGTGAACCTGGCGCGAAAGCCAAGAAAGGACGCCGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR CAA 90 bp | TCTGCTAGAGACGACTCTGCTCTGCAGGGCAGGGCCATAGGGACCTGCACCCGGTTCTTGGGCCGTCCCTaGGGCTTGGTGGGGGACTCC | + |
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Preference number: 5 (lower is better) Translates to: SARDDSALQGRAIGTCTRFLGRP*GLVGDS Trigger: GGAGTCCCCCACCAAGCCCAAGGGACGGCCCAAGAA...CCGGGTGCAGGTCCCTATGGCCCTGCCCTGCAGAGCAGAGTCGTCTCTAGCAGA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR CAA 90 bp | GGATTGGCTTCCGGGCCTGTGTCCTTCCTTGTCTGGCCCTTAATTGTCCGCATTGGCCGTCCCTTGGGCTaGGTGGGGGACTCCAGGCCG | + |
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Preference number: 5 (lower is better) Translates to: GLASGPVSFLVWPLIVRIGRPLG*VGDSRP Trigger: CGGCCTGGAGTCCCCCACCAAGCCCAAGGGACGGCC...AATGCGGACAATTAAGGGCCAGACAAGGAAGGACACAGGCCCGGAAGCCAATCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR CAA 90 bp | ACACCTGGGATTGGCTTCCGGGCCTGTGTCCTTCCTTGTCTGGCCCTTAATTGTCAGCTTCCCGCGGAGTaGCAGCTCCAGCGGCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: TPGIGFRACVLPCLALNCQLPAE*QLQRQV Trigger: CACCTGCCGCTGGAGCTGCAACTCCGCGGGAAGCTG...ACAATTAAGGGCCAGACAAGGAAGGACACAGGCCCGGAAGCCAATCCCAGGTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS-3UTR CAA 90 bp | GGATTGGCTTCCGGGCCTGTGTCCTTCCTTGTCTGGCCCTTAATTGTCCGCATTGGCTTCTCTGTCTCCTaGGCACGCTCTTGCTCCGTG | + |
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Preference number: 5 (lower is better) Translates to: GLASGPVSFLVWPLIVRIGFSVS*ARSCSV Trigger: CACGGAGCAAGAGCGTGCCAAGGAGACAGAGAAGCC...AATGCGGACAATTAAGGGCCAGACAAGGAAGGACACAGGCCCGGAAGCCAATCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS GCA 72 bp | GCGGAGTTGCAGCTCCAGCGGCAGGTGCGATGCGCCTaGGGGGCCGGGCATCCCAGGCCCGGCGGCCAACAA | + |
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Preference number: 6 (lower is better) Translates to: AELQLQRQVRCA*GAGHPRPGGQQ Trigger: TTGTTGGCCGCCGGGCCTGGGATGCCCGGCCCCGCAGGCGCATCGCACCTGCCGCTGGAGCTGCAACTCCGC 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS CCA 72 bp | GCGGCCTGCTCAGCCTTCAGCACCGCCAGGTGGCTGTaGAAGGGCCGGGCGGCCAGCAGCGCCTGTACGCCG | + |
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Preference number: 6 (lower is better) Translates to: AACSAFSTARWL*KGRAASSACTP Trigger: CGGCGTACAGGCGCTGCTGGCCGCCCGGCCCTTCCACAGCCACCTGGCGGTGCTGAAGGCTGAGCAGGCCGC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS CAA 90 bp | CGCGCCAGGTTCACCAGAGCCAGCTGCTTCCAGCTTCCCGCGGAGTaGCAGCTCCAGCGGCAGGTGCGATGCGCCTGCGGGGCCGGGCAT | + |
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Preference number: 6 (lower is better) Translates to: RARFTRASCFQLPAE*QLQRQVRCACGAGH Trigger: ATGCCCGGCCCCGCAGGCGCATCGCACCTGCCGCTGGAGCTGCAACTCCGCGGGAAGCTGGAAGCAGCTGGCTCTGGTGAACCTGGCGCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS TCA 72 bp | CCAGCCCGGAGCAGCCGAGCGGCGCCAGTGGGAACTTaGACACTGCGGCCTGCTCAGCCTTCAGCACCGCCA | + |
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Preference number: 6 (lower is better) Translates to: PARSSRAAPVGT*TLRPAQPSAPP Trigger: TGGCGGTGCTGAAGGCTGAGCAGGCCGCAGTGTTCAAGTTCCCACTGGCGCCGCTCGGCTGCTCCGGGCTGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS GCA 72 bp | TCACCAGAGCCAGCTGCTTCCAGCTTCCCGCGGAGTTaGAGCTCCAGCGGCAGGTGCGATGCGCCTGCGGGG | + |
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Preference number: 6 (lower is better) Translates to: SPEPAASSFPRS*SSSGRCDAPAG Trigger: CCCCGCAGGCGCATCGCACCTGCCGCTGGAGCTGCAACTCCGCGGGAAGCTGGAAGCAGCTGGCTCTGGTGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS GCA 72 bp | GGAGCAGCCGAGCGGCGCCAGTGGGAACTTGAACACTaGGGCCTGCTCAGCCTTCAGCACCGCCAGGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: GAAERRQWELEH*GLLSLQHRQVA Trigger: AGCCACCTGGCGGTGCTGAAGGCTGAGCAGGCCGCAGTGTTCAAGTTCCCACTGGCGCCGCTCGGCTGCTCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS CAA 72 bp | TTCACCAGAGCCAGCTGCTTCCAGCTTCCCGCGGAGTaGCAGCTCCAGCGGCAGGTGCGATGCGCCTGCGGG | + |
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Preference number: 6 (lower is better) Translates to: FTRASCFQLPAE*QLQRQVRCACG Trigger: CCCGCAGGCGCATCGCACCTGCCGCTGGAGCTGCAACTCCGCGGGAAGCTGGAAGCAGCTGGCTCTGGTGAA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS GCA 72 bp | CCGAGCGGCGCCAGTGGGAACTTGAACACTGCGGCCTaGTCAGCCTTCAGCACCGCCAGGTGGCTGTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: PSGASGNLNTAA*SAFSTARWLWK Trigger: CTTCCACAGCCACCTGGCGGTGCTGAAGGCTGAGCAGGCCGCAGTGTTCAAGTTCCCACTGGCGCCGCTCGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS GCA 72 bp | TTTCTTGGCTTTCGCGCCAGGTTCACCAGAGCCAGCTaGTTCCAGCTTCCCGCGGAGTTGCAGCTCCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: FLGFRARFTRAS*FQLPAELQLQR Trigger: CCGCTGGAGCTGCAACTCCGCGGGAAGCTGGAAGCAGCTGGCTCTGGTGAACCTGGCGCGAAAGCCAAGAAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS CAA 72 bp | AGCTCAGTGAATACGGTGCGACTCCGGCGTCCTTTCTaGGCTTTCGCGCCAGGTTCACCAGAGCCAGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: SSVNTVRLRRPF*AFAPGSPEPAA Trigger: AGCAGCTGGCTCTGGTGAACCTGGCGCGAAAGCCAAGAAAGGACGCCGGAGTCGCACCGTATTCACTGAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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| CDS GCA 72 bp | GCTAGATCTATTCTGTCAGGGGTAGAGAGGTACTTCTaGTTCTCGAAGCGTTTCTCCAGCCCCATCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: ARSILSGVERYF*FSKRFSSPISC Trigger: GCAGCTGATGGGGCTGGAGAAACGCTTCGAGAAGCAGAAGTACCTCTCTACCCCTGACAGAATAGATCTAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021813.5 |
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