Pregenerated sensors for BANF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024844

Ensembl transcript IDs: ENSMUST00000025762.16, ENSMUST00000170010.3, ENSMUST00000237167.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR GCA 90 bp	GGGAGGTGGAAGGGAAAGGCATGCAAGGGAAACGATCCCAGAAAGATTGAAACGGACAGGGAGGAGCCCTaGCCTGCTGCAGACTCTGGA	+
Preference number: 2 (lower is better) Translates to: GRWKGKACKGNDPRKIETDREEP*PAADSG Trigger: TCCAGAGTCTGCAGCAGGGCAGGGCTCCTCCCTGTC...CGTTTCAATCTTTCTGGGATCGTTTCCCTTGCATGCCTTTCCCTTCCACCTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025762.16 ENSMUST00000170010.3 ENSMUST00000237167.2
3UTR-3UTR GCA 90 bp	GGGAGGTGGAAGGGAAAGGCATGCAAGGGAAACGATCCCAGAAAGATTGAAACGGGAGCCCTGCCCTGCTaGAGACTCTGGAAACTGTGC	+
Preference number: 2 (lower is better) Translates to: GRWKGKACKGNDPRKIETGALPC*RLWKLC Trigger: GCACAGTTTCCAGAGTCTGCAGCAGGGCAGGGCTCC...CGTTTCAATCTTTCTGGGATCGTTTCCCTTGCATGCCTTTCCCTTCCACCTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025762.16 ENSMUST00000170010.3 ENSMUST00000237167.2
3UTR-3UTR GCA 90 bp	GCATGCAAGGGAAACGATCCCAGAAAGATTGAAACGCTGAGGGGAGAGAACTCCGGAGCCCTGCCCTGCTaGAGACTCTGGAAACTGTGC	+
Preference number: 2 (lower is better) Translates to: ACKGNDPRKIETLRGENSGALPC*RLWKLC Trigger: GCACAGTTTCCAGAGTCTGCAGCAGGGCAGGGCTCC...GGAGTTCTCTCCCCTCAGCGTTTCAATCTTTCTGGGATCGTTTCCCTTGCATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025762.16 ENSMUST00000170010.3 ENSMUST00000237167.2
3UTR-3UTR GCA 90 bp	GCATGCAAGGGAAACGATCCCAGAAAGATTGAAACGCTGAGGGGAGAGAACTCCAGACTCTGGAAACTGTaGTGTGGCTGGGGTATGAGG	+
Preference number: 2 (lower is better) Translates to: ACKGNDPRKIETLRGENSRLWKL*CGWGMR Trigger: CCTCATACCCCAGCCACAGCACAGTTTCCAGAGTCT...GGAGTTCTCTCCCCTCAGCGTTTCAATCTTTCTGGGATCGTTTCCCTTGCATGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025762.16 ENSMUST00000170010.3 ENSMUST00000237167.2
3UTR-3UTR GCA 90 bp	GGGAGGTGGAAGGGAAAGGCATGCAAGGGAAACGATCCCAGAAAGATTGAAACGAGACTCTGGAAACTGTaGTGTGGCTGGGGTATGAGG	+
Preference number: 2 (lower is better) Translates to: GRWKGKACKGNDPRKIETRLWKL*CGWGMR Trigger: CCTCATACCCCAGCCACAGCACAGTTTCCAGAGTCT...CGTTTCAATCTTTCTGGGATCGTTTCCCTTGCATGCCTTTCCCTTCCACCTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025762.16 ENSMUST00000170010.3 ENSMUST00000237167.2
3UTR GCA 72 bp	GGAGGAGCCCTGCCCTGCTGCAGACTCTGGAAACTGTaGTGTGGCTGGGGTATGAGGGATCCCCAGAGAACA	+
Preference number: 3 (lower is better) Translates to: GGALPCCRLWKL*CGWGMRDPQRT Trigger: TGTTCTCTGGGGATCCCTCATACCCCAGCCACAGCACAGTTTCCAGAGTCTGCAGCAGGGCAGGGCTCCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025762.16 ENSMUST00000170010.3 ENSMUST00000237167.2
3UTR GCA 72 bp	CTTTTCCTTTATGGAGGACAGGGAGGAGCCCTGCCCTaGTGCAGACTCTGGAAACTGTGCTGTGGCTGGGGT	+
Preference number: 3 (lower is better) Translates to: LFLYGGQGGALP*CRLWKLCCGWG Trigger: ACCCCAGCCACAGCACAGTTTCCAGAGTCTGCAGCAGGGCAGGGCTCCTCCCTGTCCTCCATAAAGGAAAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025762.16 ENSMUST00000170010.3 ENSMUST00000237167.2
3UTR TCA 72 bp	GGGAAAGGCATGCAAGGGAAACGATCCCAGAAAGATTaGAACGCTGAGGGGAGAGAACTCCCCATAGACCCT	+
Preference number: 3 (lower is better) Translates to: GKGMQGKRSQKD*NAEGRELPIDP Trigger: AGGGTCTATGGGGAGTTCTCTCCCCTCAGCGTTTCAATCTTTCTGGGATCGTTTCCCTTGCATGCCTTTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025762.16 ENSMUST00000170010.3 ENSMUST00000237167.2

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