Pregenerated sensors for BAK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057789Ensembl transcript IDs: ENSMUST00000025034.12, ENSMUST00000078691.12, ENSMUST00000143158.3, ENSMUST00000237411.2
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGGTCTGAACTCTCACCTCTGCCCTCACTCTGGGCTCAGAATCCCTaGGAGTCCAGCCGCCAAGGCAAAAATGGATGGATTGGGGTAGGA | + |
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Preference number: 1 (lower is better) Translates to: WSELSPLPSLWAQNP*ESSRQGKNGWIGVG Trigger: TCCTACCCCAATCCATCCATTTTTGCCTTGGCGGCTGGACTCTCAGGGATTCTGAGCCCAGAGTGAGGGCAGAGGTGAGAGTTCAGACCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR TCA 90 bp | AATGTAGGGAGGGCAAGGATTGTGCTCAGGTCTCTTCTCAAGGGCTaGCCTTCCAAAGTAGCAGGAGTGTTGGGAACACAGGTTCGAACC | + |
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Preference number: 1 (lower is better) Translates to: NVGRARIVLRSLLKG*PSKVAGVLGTQVRT Trigger: GGTTCGAACCTGTGTTCCCAACACTCCTGCTACTTTGGAAGGTCAGCCCTTGAGAAGAGACCTGAGCACAATCCTTGCCCTCCCTACATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CCA 90 bp | GGGCTGACCTTCCAAAGTAGCAGGAGTGTTGGGAACACAGGTTCGAACCACCAGAGCCAGGCACGTGGCTaGGGCCCCAGTGGGGCTCCC | + |
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Preference number: 2 (lower is better) Translates to: GLTFQSSRSVGNTGSNHQSQARG*GPSGAP Trigger: GGGAGCCCCACTGGGGCCCCAGCCACGTGCCTGGCT...CTGGTGGTTCGAACCTGTGTTCCCAACACTCCTGCTACTTTGGAAGGTCAGCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR TCA 90 bp | GTGCCCACCCCCTCCCCTGTCATAGTGGCTGAGTCTGAGGCTCTGTCCGTCCGTTGGGGAAATGGACGATaGGGTGGGGGTGAAGTAGGT | + |
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Preference number: 2 (lower is better) Translates to: VPTPSPVIVAESEALSVRWGNGR*GGGEVG Trigger: ACCTACTTCACCCCCACCTCATCGTCCATTTCCCCA...ACGGACGGACAGAGCCTCAGACTCAGCCACTATGACAGGGGAGGGGGTGGGCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CCA 90 bp | TCCCCAAGCCCTCCATGTTCTGACTTTGGGCACAGTGGAGAAAAAGGGTGGATTAGCCAGGCACGTGGCTaGGGCCCCAGTGGGGCTCCC | + |
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Preference number: 2 (lower is better) Translates to: SPSPPCSDFGHSGEKGWISQARG*GPSGAP Trigger: GGGAGCCCCACTGGGGCCCCAGCCACGTGCCTGGCT...AATCCACCCTTTTTCTCCACTGTGCCCAAAGTCAGAACATGGAGGGCTTGGGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR GCA 90 bp | GTTGTGCAAGACAGAGAAAAACACCCACCCCACCCAACCCGAGGAGGACCTAGGGACACCTCCAAAGAGTaGCCACCCCCTCCCCTGTCA | + |
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Preference number: 2 (lower is better) Translates to: VVQDREKHPPHPTRGGPRDTSKE*PPPPLS Trigger: TGACAGGGGAGGGGGTGGGCACTCTTTGGAGGTGTC...CCTAGGTCCTCCTCGGGTTGGGTGGGGTGGGTGTTTTTCTCTGTCTTGCACAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR GCA 90 bp | ACAGAGAAAAACACCCACCCCACCCAACCCGAGGAGGACCTAGGCAGACAAGGAACGAAAATTCAGGGCTaGCACCCAACCGCCTCTCTG | + |
|
Preference number: 2 (lower is better) Translates to: TEKNTHPTQPEEDLGRQGTKIQG*HPTASL Trigger: CAGAGAGGCGGTTGGGTGGCAGCCCTGAATTTTCGT...TCCTTGTCTGCCTAGGTCCTCCTCGGGTTGGGTGGGGTGGGTGTTTTTCTCTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025034.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CCA 90 bp | GTTCTGACTTTGGGCACAGTGGAGAAAAAGGGTGGATTGTATCTAAAGGGTAGTAGCCAGGCACGTGGCTaGGGCCCCAGTGGGGCTCCC | + |
|
Preference number: 2 (lower is better) Translates to: VLTLGTVEKKGGLYLKGSSQARG*GPSGAP Trigger: GGGAGCCCCACTGGGGCCCCAGCCACGTGCCTGGCT...ACTACCCTTTAGATACAATCCACCCTTTTTCTCCACTGTGCCCAAAGTCAGAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CCA 90 bp | GTTGTGCAAGACAGAGAAAAACACCCACCCCACCCAACCCGAGGAGGACCTAGGGGTATTGATGACCCCTaGGCGGTGGCTCTCCAAATC | + |
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Preference number: 2 (lower is better) Translates to: VVQDREKHPPHPTRGGPRGIDDP*AVALQI Trigger: GATTTGGAGAGCCACCGCCCAGGGGTCATCAATACC...CCTAGGTCCTCCTCGGGTTGGGTGGGGTGGGTGTTTTTCTCTGTCTTGCACAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CCA 90 bp | ATCAGGGGTGCCTGTTTGCTAAAGCGTCTTTGCCCTGGGGAGGAAGGAGAGGACGGTATTGATGACCCCTaGGCGGTGGCTCTCCAAATC | + |
|
Preference number: 2 (lower is better) Translates to: IRGACLLKRLCPGEEGEDGIDDP*AVALQI Trigger: GATTTGGAGAGCCACCGCCCAGGGGTCATCAATACC...GTCCTCTCCTTCCTCCCCAGGGCAAAGACGCTTTAGCAAACAGGCACCCCTGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR TCA 90 bp | ATCAGGGGTGCCTGTTTGCTAAAGCGTCTTTGCCCTGGGGAGGAAGGAGAGGACGCTCCCCGGGAGTCATaGTCTGAAGAATCTGTGTAC | + |
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Preference number: 2 (lower is better) Translates to: IRGACLLKRLCPGEEGEDAPRES*SEESVY Trigger: GTACACAGATTCTTCAGATCATGACTCCCGGGGAGC...GTCCTCTCCTTCCTCCCCAGGGCAAAGACGCTTTAGCAAACAGGCACCCCTGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025034.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR TCA 90 bp | ACAGAGAAAAACACCCACCCCACCCAACCCGAGGAGGACCTAGGCAGACAAGGACAGGATTGGAGAGCCTaGTGGATGTGTTCAGACAGC | + |
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Preference number: 2 (lower is better) Translates to: TEKNTHPTQPEEDLGRQGQDWRA*WMCSDS Trigger: GCTGTCTGAACACATCCATCAGGCTCTCCAATCCTG...TCCTTGTCTGCCTAGGTCCTCCTCGGGTTGGGTGGGGTGGGTGTTTTTCTCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR TCA 90 bp | GGGTTCAGTAGCACCATGCAATGTTGGGGTATTGATGACCCCTGGGCGGTGGCTTTCCCGGCTGTGGGCTaGAGCTGTTCTAGTAAATTC | + |
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Preference number: 2 (lower is better) Translates to: GFSSTMQCWGIDDPWAVAFPAVG*SCSSKF Trigger: GAATTTACTAGAACAGCTTCAGCCCACAGCCGGGAA...AGCCACCGCCCAGGGGTCATCAATACCCCAACATTGCATGGTGCTACTGAACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237411.2 |
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| 3UTR-3UTR GCA 90 bp | CAGTTGGTCTTGGGAGCCAATGTAGGGAGGGCAAGGATTGTGCTCAGGTCTCTTACGAAAATTCAGGGCTaGCACCCAACCGCCTCTCTG | + |
|
Preference number: 2 (lower is better) Translates to: QLVLGANVGRARIVLRSLTKIQG*HPTASL Trigger: CAGAGAGGCGGTTGGGTGGCAGCCCTGAATTTTCGT...AAGAGACCTGAGCACAATCCTTGCCCTCCCTACATTGGCTCCCAAGACCAACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025034.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CCA 90 bp | CAAGTAATCATAGGTTCCGGGGAGGAACTGCACCCAGGTCCACAGTTGCTTCTGAAAGCGTCTTTGCCCTaGGGAGGAAGGAGAGGACTG | + |
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Preference number: 2 (lower is better) Translates to: QVIIGSGEELHPGPQLLLKASLP*GGRRGL Trigger: CAGTCCTCTCCTTCCTCCCCAGGGCAAAGACGCTTT...CAGAAGCAACTGTGGACCTGGGTGCAGTTCCTCCCCGGAACCTATGATTACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CCA 90 bp | CCCCAAGCCCTCCATGTTCTGACTTTGGGCACAGTGGAGAAAAAGGGTGGATTGGGTATTGATGACCCCTaGGCGGTGGCTCTCCAAATC | + |
|
Preference number: 2 (lower is better) Translates to: PQALHVLTLGTVEKKGGLGIDDP*AVALQI Trigger: GATTTGGAGAGCCACCGCCCAGGGGTCATCAATACC...CAATCCACCCTTTTTCTCCACTGTGCCCAAAGTCAGAACATGGAGGGCTTGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR TCA 90 bp | CCCCAAGCCCTCCATGTTCTGACTTTGGGCACAGTGGAGAAAAAGGGTGGATTGGCTCCCCGGGAGTCATaGTCTGAAGAATCTGTGTAC | + |
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Preference number: 2 (lower is better) Translates to: PQALHVLTLGTVEKKGGLAPRES*SEESVY Trigger: GTACACAGATTCTTCAGATCATGACTCCCGGGGAGC...CAATCCACCCTTTTTCTCCACTGTGCCCAAAGTCAGAACATGGAGGGCTTGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025034.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR GCA 90 bp | TTCCAAAGTAGCAGGAGTGTTGGGAACACAGGTTCGAACCACCAGTCCCCAAGCTTGCTAAAGCGTCTTTaGCCTGGGGAGGAAGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: FQSSRSVGNTGSNHQSPSLLKRL*PGEEGE Trigger: CTCTCCTTCCTCCCCAGGGCAAAGACGCTTTAGCAA...GCTTGGGGACTGGTGGTTCGAACCTGTGTTCCCAACACTCCTGCTACTTTGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR GCA 90 bp | CAAGTAATCATAGGTTCCGGGGAGGAACTGCACCCAGGTCCACAGTTGCTTCTGTTGCTAAAGCGTCTTTaGCCTGGGGAGGAAGGAGAG | + |
|
Preference number: 2 (lower is better) Translates to: QVIIGSGEELHPGPQLLLLLKRL*PGEEGE Trigger: CTCTCCTTCCTCCCCAGGGCAAAGACGCTTTAGCAA...CAGAAGCAACTGTGGACCTGGGTGCAGTTCCTCCCCGGAACCTATGATTACTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CCA 90 bp | AACCACCAGTCCCCAAGCCCTCCATGTTCTGACTTTGGGCACAGTGGAGAAAAAAAAGCGTCTTTGCCCTaGGGAGGAAGGAGAGGACTG | + |
|
Preference number: 2 (lower is better) Translates to: NHQSPSPPCSDFGHSGEKKASLP*GGRRGL Trigger: CAGTCCTCTCCTTCCTCCCCAGGGCAAAGACGCTTT...TTTTTCTCCACTGTGCCCAAAGTCAGAACATGGAGGGCTTGGGGACTGGTGGTT 53% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CCA 90 bp | AGTAATCATAGGTTCCGGGGAGGAACTGCACCCAGGTCCACAGTTGCTTCTGCTCCGCCAAGGCAAAAATaGATGGATTGGGGTAGGAGA | + |
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Preference number: 2 (lower is better) Translates to: SNHRFRGGTAPRSTVASAPPRQK*MDWGRR Trigger: TCTCCTACCCCAATCCATCCATTTTTGCCTTGGCGG...AGCAGAAGCAACTGTGGACCTGGGTGCAGTTCCTCCCCGGAACCTATGATTACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR GCA 90 bp | GGCAAGGATTGTGCTCAGGTCTCTTCTCAAGGGCTGACCTTCCAAAGTAGCAGGTCTCCAAATCAGGGGTaGCTGTTTGCTAAAGCGTCT | + |
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Preference number: 2 (lower is better) Translates to: GKDCAQVSSQGLTFQSSRSPNQG*LFAKAS Trigger: AGACGCTTTAGCAAACAGGCACCCCTGATTTGGAGA...CCTGCTACTTTGGAAGGTCAGCCCTTGAGAAGAGACCTGAGCACAATCCTTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR CAA 90 bp | ACACAGGTTCGAACCACCAGTCCCCAAGCCCTCCATGTTCTGACTTaGGGCACAGTGGAGAAAAAGGGTGGATTGTATCTAAAGGGTAGT | + |
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Preference number: 2 (lower is better) Translates to: TQVRTTSPQALHVLT*GTVEKKGGLYLKGS Trigger: ACTACCCTTTAGATACAATCCACCCTTTTTCTCCACTGTGCCCAAAGTCAGAACATGGAGGGCTTGGGGACTGGTGGTTCGAACCTGTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR TCA 90 bp | CTGACTTTGGGCACAGTGGAGAAAAAGGGTGGATTGTATCTAAAGGGTAGTATATGGAGGCGATCTTGGTaGAGAGTTCGTAGGCATTCC | + |
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Preference number: 2 (lower is better) Translates to: LTLGTVEKKGGLYLKGSIWRRSW*RVRRHS Trigger: GGAATGCCTACGAACTCTTCACCAAGATCGCCTCCA...TATACTACCCTTTAGATACAATCCACCCTTTTTCTCCACTGTGCCCAAAGTCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000237411.2 |
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| 3UTR-3UTR TCA 90 bp | GTTCTGACTTTGGGCACAGTGGAGAAAAAGGGTGGATTGTATCTAAAGGGTAGTTGTAATGATGCAGTATaGTATCAGCCAAAAAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: VLTLGTVEKKGGLYLKGSCNDAV*YQPKSR Trigger: CCTGCTTTTTGGCTGATATCATACTGCATCATTACA...ACTACCCTTTAGATACAATCCACCCTTTTTCTCCACTGTGCCCAAAGTCAGAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025034.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR GCA 90 bp | CGATACATTTGGCTTAATCAAAACTTCTCACCCCTATGTTGTGCAAGACAGAGACTCACCCCTATGTTGTaGAAGACAGAGAAAAACACC | + |
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Preference number: 2 (lower is better) Translates to: RYIWLNQNFSPLCCARQRLTPML*KTEKNT Trigger: GGTGTTTTTCTCTGTCTTGCACAACATAGGGGTGAG...TCTCTGTCTTGCACAACATAGGGGTGAGAAGTTTTGATTAAGCCAAATGTATCG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR TCA 90 bp | CTGACTTTGGGCACAGTGGAGAAAAAGGGTGGATTGTATCTAAAGGGTAGTATATGTAATGATGCAGTATaGTATCAGCCAAAAAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: LTLGTVEKKGGLYLKGSICNDAV*YQPKSR Trigger: CCTGCTTTTTGGCTGATATCATACTGCATCATTACA...TATACTACCCTTTAGATACAATCCACCCTTTTTCTCCACTGTGCCCAAAGTCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025034.12 ENSMUST00000237411.2 |
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| 3UTR CCA 72 bp | AGCAGGCAGGCTCACCTGAGAGCCCTGGGGAGAAAGTaGCGTCTTCCCCTACCCACTAGGTTGGGAGCACGG | + |
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Preference number: 3 (lower is better) Translates to: SRQAHLRALGRK*RLPLPTRLGAR Trigger: CCGTGCTCCCAACCTAGTGGGTAGGGGAAGACGCCACTTTCTCCCCAGGGCTCTCAGGTGAGCCTGCCTGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CAA 90 bp | GTGCCCACCCCCTCCCCTGTCATAGTGGCTGAGTCTGAGGCTCTGTCCGTCCGTTTTGCTAAAGCGTCTTaGCCCTGGGGAGGAAGGAGA | + |
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Preference number: 3 (lower is better) Translates to: VPTPSPVIVAESEALSVRFAKAS*PWGGRR Trigger: TCTCCTTCCTCCCCAGGGCAAAGACGCTTTAGCAAA...ACGGACGGACAGAGCCTCAGACTCAGCCACTATGACAGGGGAGGGGGTGGGCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CAA 90 bp | TGGCTGAGTCTGAGGCTCTGTCCGTCCGTCTGTCAGGAAGGCCTCCGCCCCAGCAAAGTAGCAGGAGTGTaGGGAACACAGGTTCGAACC | + |
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Preference number: 3 (lower is better) Translates to: WLSLRLCPSVCQEGLRPSKVAGV*GTQVRT Trigger: GGTTCGAACCTGTGTTCCCAACACTCCTGCTACTTT...GCTGGGGCGGAGGCCTTCCTGACAGACGGACGGACAGAGCCTCAGACTCAGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR GCA 72 bp | CCGGGGAGGAACTGCACCCAGGTCCACAGTTGCTTCTaGTGGAGTAGTTCTCTAGTGTGGACACCTCCAAAG | + |
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Preference number: 3 (lower is better) Translates to: PGRNCTQVHSCF*WSSSLVWTPPK Trigger: CTTTGGAGGTGTCCACACTAGAGAACTACTCCAGCAGAAGCAACTGTGGACCTGGGTGCAGTTCCTCCCCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR CCA 72 bp | GTCCACAGTTGCTTCTGCTGGAGTAGTTCTCTAGTGTaGACACCTCCAAAGAGTGCCCACCCCCTCCCCTGT | + |
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Preference number: 3 (lower is better) Translates to: VHSCFCWSSSLV*TPPKSAHPLPC Trigger: ACAGGGGAGGGGGTGGGCACTCTTTGGAGGTGTCCACACTAGAGAACTACTCCAGCAGAAGCAACTGTGGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CAA 90 bp | ACAGAGAAAAACACCCACCCCACCCAACCCGAGGAGGACCTAGGCAGACAAGGATTTGCTAAAGCGTCTTaGCCCTGGGGAGGAAGGAGA | + |
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Preference number: 3 (lower is better) Translates to: TEKNTHPTQPEEDLGRQGFAKAS*PWGGRR Trigger: TCTCCTTCCTCCCCAGGGCAAAGACGCTTTAGCAAA...TCCTTGTCTGCCTAGGTCCTCCTCGGGTTGGGTGGGGTGGGTGTTTTTCTCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CAA 90 bp | GGGAGGAACTGCACCCAGGTCCACAGTTGCTTCTGCTGGAGTAGTTCTCTAGTGCTCCTACAGTTGGTCTaGGGAGCCAATGTAGGGAGG | + |
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Preference number: 3 (lower is better) Translates to: GRNCTQVHSCFCWSSSLVLLQLV*GANVGR Trigger: CCTCCCTACATTGGCTCCCAAGACCAACTGTAGGAG...CACTAGAGAACTACTCCAGCAGAAGCAACTGTGGACCTGGGTGCAGTTCCTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR CCA 72 bp | GGATTGGAGAGCCTGATGGATGTGTTCAGACAGCTGTaGTCTGAACTCTCACCTCTGCCCTCACTCTGGGCT | + |
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Preference number: 3 (lower is better) Translates to: GLESLMDVFRQL*SELSPLPSLWA Trigger: AGCCCAGAGTGAGGGCAGAGGTGAGAGTTCAGACCACAGCTGTCTGAACACATCCATCAGGCTCTCCAATCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CAA 90 bp | ACACAGGTTCGAACCACCAGTCCCCAAGCCCTCCATGTTCTGACTTTGGGCACAATCAGGGGTGCCTGTTaGCTAAAGCGTCTTTGCCCT | + |
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Preference number: 3 (lower is better) Translates to: TQVRTTSPQALHVLTLGTIRGAC*LKRLCP Trigger: AGGGCAAAGACGCTTTAGCAAACAGGCACCCCTGAT...TGTGCCCAAAGTCAGAACATGGAGGGCTTGGGGACTGGTGGTTCGAACCTGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CAA 90 bp | CAAGTAATCATAGGTTCCGGGGAGGAACTGCACCCAGGTCCACAGTTGCTTCTGCTCCTACAGTTGGTCTaGGGAGCCAATGTAGGGAGG | + |
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Preference number: 3 (lower is better) Translates to: QVIIGSGEELHPGPQLLLLLQLV*GANVGR Trigger: CCTCCCTACATTGGCTCCCAAGACCAACTGTAGGAG...CAGAAGCAACTGTGGACCTGGGTGCAGTTCCTCCCCGGAACCTATGATTACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR CCA 72 bp | GGGAGGAACTGCACCCAGGTCCACAGTTGCTTCTGCTaGAGTAGTTCTCTAGTGTGGACACCTCCAAAGAGT | + |
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Preference number: 3 (lower is better) Translates to: GRNCTQVHSCFC*SSSLVWTPPKS Trigger: ACTCTTTGGAGGTGTCCACACTAGAGAACTACTCCAGCAGAAGCAACTGTGGACCTGGGTGCAGTTCCTCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CAA 90 bp | CTGACCTTCCAAAGTAGCAGGAGTGTTGGGAACACAGGTTCGAACCACCAGTCCTTTGCTAAAGCGTCTTaGCCCTGGGGAGGAAGGAGA | + |
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Preference number: 3 (lower is better) Translates to: LTFQSSRSVGNTGSNHQSFAKAS*PWGGRR Trigger: TCTCCTTCCTCCCCAGGGCAAAGACGCTTTAGCAAA...GGACTGGTGGTTCGAACCTGTGTTCCCAACACTCCTGCTACTTTGGAAGGTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CAA 90 bp | CATAGGTTCCGGGGAGGAACTGCACCCAGGTCCACAGTTGCTTCTGCTGGAGTACTCCATGTTCTGACTTaGGGCACAGTGGAGAAAAAG | + |
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Preference number: 3 (lower is better) Translates to: HRFRGGTAPRSTVASAGVLHVLT*GTVEKK Trigger: CTTTTTCTCCACTGTGCCCAAAGTCAGAACATGGAG...TACTCCAGCAGAAGCAACTGTGGACCTGGGTGCAGTTCCTCCCCGGAACCTATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CAA 90 bp | GTTGTGCAAGACAGAGAAAAACACCCACCCCACCCAACCCGAGGAGGACCTAGGCTCCATGTTCTGACTTaGGGCACAGTGGAGAAAAAG | + |
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Preference number: 3 (lower is better) Translates to: VVQDREKHPPHPTRGGPRLHVLT*GTVEKK Trigger: CTTTTTCTCCACTGTGCCCAAAGTCAGAACATGGAG...CCTAGGTCCTCCTCGGGTTGGGTGGGGTGGGTGTTTTTCTCTGTCTTGCACAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR TCA 72 bp | AGGGCAAGGATTGTGCTCAGGTCTCTTCTCAAGGGCTaGCCTTCCAAAGTAGCAGGAGTGTTGGGAACACAG | + |
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Preference number: 3 (lower is better) Translates to: RARIVLRSLLKG*PSKVAGVLGTQ Trigger: CTGTGTTCCCAACACTCCTGCTACTTTGGAAGGTCAGCCCTTGAGAAGAGACCTGAGCACAATCCTTGCCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR-3UTR CAA 90 bp | CTGACTTTGGGCACAGTGGAGAAAAAGGGTGGATTGTATCTAAAGGGTAGTATAATCAGGGGTGCCTGTTaGCTAAAGCGTCTTTGCCCT | + |
|
Preference number: 3 (lower is better) Translates to: LTLGTVEKKGGLYLKGSIIRGAC*LKRLCP Trigger: AGGGCAAAGACGCTTTAGCAAACAGGCACCCCTGAT...TATACTACCCTTTAGATACAATCCACCCTTTTTCTCCACTGTGCCCAAAGTCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
||
| CDS-3UTR GCA 90 bp | TGGCTGAGTCTGAGGCTCTGTCCGTCCGTCTGTCAGGAAGGCCTCCGCCCCAGCATAGGCTGTGCATGTTaGTGCTGGCCTGGAGGCGAT | + |
|
Preference number: 4 (lower is better) Translates to: WLSLRLCPSVCQEGLRPSIGCAC*CWPGGD Trigger: ATCGCCTCCAGGCCAGCAGCAACATGCACAGCCTAT...GCTGGGGCGGAGGCCTTCCTGACAGACGGACGGACAGAGCCTCAGACTCAGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025034.12 |
||
| CDS-3UTR TCA 90 bp | TGGCTGAGTCTGAGGCTCTGTCCGTCCGTCTGTCAGGAAGGCCTCCGCCCCAGCTGGAGGCGATCTTGGTaGAGAGTTCGTAGGCATTCC | + |
|
Preference number: 4 (lower is better) Translates to: WLSLRLCPSVCQEGLRPSWRRSW*RVRRHS Trigger: GGAATGCCTACGAACTCTTCACCAAGATCGCCTCCA...GCTGGGGCGGAGGCCTTCCTGACAGACGGACGGACAGAGCCTCAGACTCAGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 |
||
| CDS-3UTR CCA 90 bp | GGTAGGGGGTGGGGTAGGGAGAGAGGTTTAGTCCAGCCAGGCACGTGGCTGGGGGACCCAAGATGCTGTTaGGTTCCAGGGGCAAGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: GRGWGRERGLVQPGTWLGDPRCC*VPGASC Trigger: ACAACTTGCCCCTGGAACCCAACAGCATCTTGGGTC...CCCCAGCCACGTGCCTGGCTGGACTAAACCTCTCTCCCTACCCCACCCCCTACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
||
| 3UTR CAA 72 bp | CCCTGGGCGGTGGCTCTCCAAATCAGGGGTGCCTGTTaGCTAAAGCGTCTTTGCCCTGGGGAGGAAGGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: PWAVALQIRGAC*LKRLCPGEEGE Trigger: CTCTCCTTCCTCCCCAGGGCAAAGACGCTTTAGCAAACAGGCACCCCTGATTTGGAGAGCCACCGCCCAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
||
| CDS-3UTR CCA 90 bp | TTCAGTAGCACCATGCAATGTTGGGGTATTGATGACCCCTGGGCGGTGGCTCTCGTCCAGCCAGGCACGTaGCTGGAGGCGATCTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: FSSTMQCWGIDDPWAVALVQPGT*LEAILV Trigger: CACCAAGATCGCCTCCAGCCACGTGCCTGGCTGGAC...GAGAGCCACCGCCCAGGGGTCATCAATACCCCAACATTGCATGGTGCTACTGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143158.3 |
||
| CDS-3UTR GCA 90 bp | ACACAGGTTCGAACCACCAGTCCCCAAGCCCTCCATGTTCTGACTTTGGGCACAGTGTCCTGGGCAACCTaGTGTTCAGAAGGGGACGGG | + |
|
Preference number: 4 (lower is better) Translates to: TQVRTTSPQALHVLTLGTVSWAT*CSEGDG Trigger: CCCGTCCCCTTCTGAACAGCAGGTTGCCCAGGACAC...TGTGCCCAAAGTCAGAACATGGAGGGCTTGGGGACTGGTGGTTCGAACCTGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 |
||
| CDS-3UTR GCA 90 bp | TTCAGTAGCACCATGCAATGTTGGGGTATTGATGACCCCTGGGCGGTGGCTCTCGTGTCCTGGGCAACCTaGTGTTCAGAAGGGGACGGG | + |
|
Preference number: 4 (lower is better) Translates to: FSSTMQCWGIDDPWAVALVSWAT*CSEGDG Trigger: CCCGTCCCCTTCTGAACAGCAGGTTGCCCAGGACAC...GAGAGCCACCGCCCAGGGGTCATCAATACCCCAACATTGCATGGTGCTACTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000143158.3 |
||
| CDS-3UTR TCA 90 bp | GGCAAGGATTGTGCTCAGGTCTCTTCTCAAGGGCTGACCTTCCAAAGTAGCAGGAGCTGCCGACCCACCTaGCCCAAGATGCTGTTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: GKDCAQVSSQGLTFQSSRSCRPT*PKMLLG Trigger: ACCCAACAGCATCTTGGGTCAGGTGGGTCGGCAGCT...CCTGCTACTTTGGAAGGTCAGCCCTTGAGAAGAGACCTGAGCACAATCCTTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
||
| CDS-3UTR TCA 90 bp | TGGGGTTCAAGTAATCATAGGTTCCGGGGAGGAACTGCACCCAGGTCCACAGTTAGCTGCCGACCCACCTaGCCCAAGATGCTGTTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: WGSSNHRFRGGTAPRSTVSCRPT*PKMLLG Trigger: ACCCAACAGCATCTTGGGTCAGGTGGGTCGGCAGCT...AACTGTGGACCTGGGTGCAGTTCCTCCCCGGAACCTATGATTACTTGAACCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
||
| CDS-3UTR GCA 90 bp | CAAGTAATCATAGGTTCCGGGGAGGAACTGCACCCAGGTCCACAGTTGCTTCTGGTGTCCTGGGCAACCTaGTGTTCAGAAGGGGACGGG | + |
|
Preference number: 4 (lower is better) Translates to: QVIIGSGEELHPGPQLLLVSWAT*CSEGDG Trigger: CCCGTCCCCTTCTGAACAGCAGGTTGCCCAGGACAC...CAGAAGCAACTGTGGACCTGGGTGCAGTTCCTCCCCGGAACCTATGATTACTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 |
||
| CDS-3UTR GCA 90 bp | ACACAGGTTCGAACCACCAGTCCCCAAGCCCTCCATGTTCTGACTTTGGGCACACCACCTGACCCAAGATaGTGTTGGGTTCCAGGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: TQVRTTSPQALHVLTLGTPPDPR*CWVPGA Trigger: TGCCCCTGGAACCCAACAGCATCTTGGGTCAGGTGG...TGTGCCCAAAGTCAGAACATGGAGGGCTTGGGGACTGGTGGTTCGAACCTGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
||
| CDS-3UTR GCA 90 bp | CAGGTTCGAACCACCAGTCCCCAAGCCCTCCATGTTCTGACTTTGGGCACAGTGACGAAAATTCAGGGCTaGCACCCAACCGCCTCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: QVRTTSPQALHVLTLGTVTKIQG*HPTASL Trigger: CAGAGAGGCGGTTGGGTGGCAGCCCTGAATTTTCGT...CACTGTGCCCAAAGTCAGAACATGGAGGGCTTGGGGACTGGTGGTTCGAACCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078691.12 |
||
| CDS-3UTR TCA 90 bp | AGTGCCTCTGAGACAGGATGGGGTTCAGTAGCACCATGCAATGTTGGGGTATTGAGCTGCCGACCCACCTaGCCCAAGATGCTGTTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: SASETGWGSVAPCNVGVLSCRPT*PKMLLG Trigger: ACCCAACAGCATCTTGGGTCAGGTGGGTCGGCAGCT...CAATACCCCAACATTGCATGGTGCTACTGAACCCCATCCTGTCTCAGAGGCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000143158.3 ENSMUST00000237411.2 |
||
| CDS-3UTR GCA 90 bp | CCCCAAGCCCTCCATGTTCTGACTTTGGGCACAGTGGAGAAAAAGGGTGGATTGCCACCTGACCCAAGATaGTGTTGGGTTCCAGGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: PQALHVLTLGTVEKKGGLPPDPR*CWVPGA Trigger: TGCCCCTGGAACCCAACAGCATCTTGGGTCAGGTGG...CAATCCACCCTTTTTCTCCACTGTGCCCAAAGTCAGAACATGGAGGGCTTGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
||
| CDS-3UTR GCA 90 bp | CAGGGGTGCCTGTTTGCTAAAGCGTCTTTGCCCTGGGGAGGAAGGAGAGGACTGCTCTTAAATAGGCTGTaGATGTTGCTGCTGGCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: QGCLFAKASLPWGGRRGLLLNRL*MLLLAW Trigger: CCAGGCCAGCAGCAACATGCACAGCCTATTTAAGAG...CAGTCCTCTCCTTCCTCCCCAGGGCAAAGACGCTTTAGCAAACAGGCACCCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025034.12 |
||
| CDS-3UTR CCA 90 bp | TTCAGTAGCACCATGCAATGTTGGGGTATTGATGACCCCTGGGCGGTGGCTCTCAAAGCGTCTTTGCCCTaGGGAGGAAGGAGAGGACTG | + |
|
Preference number: 4 (lower is better) Translates to: FSSTMQCWGIDDPWAVALKASLP*GGRRGL Trigger: CAGTCCTCTCCTTCCTCCCCAGGGCAAAGACGCTTT...GAGAGCCACCGCCCAGGGGTCATCAATACCCCAACATTGCATGGTGCTACTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143158.3 |
||
| CDS-3UTR TCA 90 bp | GGCAAGGATTGTGCTCAGGTCTCTTCTCAAGGGCTGACCTTCCAAAGTAGCAGGTGGAGGCGATCTTGGTaGAGAGTTCGTAGGCATTCC | + |
|
Preference number: 4 (lower is better) Translates to: GKDCAQVSSQGLTFQSSRWRRSW*RVRRHS Trigger: GGAATGCCTACGAACTCTTCACCAAGATCGCCTCCA...CCTGCTACTTTGGAAGGTCAGCCCTTGAGAAGAGACCTGAGCACAATCCTTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 |
||
| CDS-3UTR TCA 90 bp | GTCAGTGCCTCTGAGACAGGATGGGGTTCAGTAGCACCATGCAATGTTGGGGTATGGAGGCGATCTTGGTaGAGAGTTCGTAGGCATTCC | + |
|
Preference number: 4 (lower is better) Translates to: VSASETGWGSVAPCNVGVWRRSW*RVRRHS Trigger: GGAATGCCTACGAACTCTTCACCAAGATCGCCTCCA...TACCCCAACATTGCATGGTGCTACTGAACCCCATCCTGTCTCAGAGGCACTGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000143158.3 |
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| CDS-3UTR CCA 90 bp | CAGTTGGTCTTGGGAGCCAATGTAGGGAGGGCAAGGATTGTGCTCAGGTCTCTTGACCCAAGATGCTGTTaGGTTCCAGGGGCAAGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: QLVLGANVGRARIVLRSLDPRCC*VPGASC Trigger: ACAACTTGCCCCTGGAACCCAACAGCATCTTGGGTC...AAGAGACCTGAGCACAATCCTTGCCCTCCCTACATTGGCTCCCAAGACCAACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
||
| CDS-3UTR CCA 90 bp | GTCAGTGCCTCTGAGACAGGATGGGGTTCAGTAGCACCATGCAATGTTGGGGTAGACCCAAGATGCTGTTaGGTTCCAGGGGCAAGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: VSASETGWGSVAPCNVGVDPRCC*VPGASC Trigger: ACAACTTGCCCCTGGAACCCAACAGCATCTTGGGTC...TACCCCAACATTGCATGGTGCTACTGAACCCCATCCTGTCTCAGAGGCACTGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000143158.3 ENSMUST00000237411.2 |
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| CDS-3UTR TCA 90 bp | CAGTTGGTCTTGGGAGCCAATGTAGGGAGGGCAAGGATTGTGCTCAGGTCTCTTTTCCCGGCTGTGGGCTaGAGCTGTTCTAGTAAATTC | + |
|
Preference number: 4 (lower is better) Translates to: QLVLGANVGRARIVLRSLFPAVG*SCSSKF Trigger: GAATTTACTAGAACAGCTTCAGCCCACAGCCGGGAA...AAGAGACCTGAGCACAATCCTTGCCCTCCCTACATTGGCTCCCAAGACCAACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 |
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| CDS-3UTR TCA 90 bp | AACCACCAGTCCCCAAGCCCTCCATGTTCTGACTTTGGGCACAGTGGAGAAAAATTCCCGGCTGTGGGCTaGAGCTGTTCTAGTAAATTC | + |
|
Preference number: 4 (lower is better) Translates to: NHQSPSPPCSDFGHSGEKFPAVG*SCSSKF Trigger: GAATTTACTAGAACAGCTTCAGCCCACAGCCGGGAA...TTTTTCTCCACTGTGCCCAAAGTCAGAACATGGAGGGCTTGGGGACTGGTGGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 |
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| CDS-3UTR GCA 90 bp | ACTTTGGGCACAGTGGAGAAAAAGGGTGGATTGTATCTAAAGGGTAGTATAAAAGTGTCCTGGGCAACCTaGAGAAGGGGACGGGGACTC | + |
|
Preference number: 4 (lower is better) Translates to: TLGTVEKKGGLYLKGSIKVSWAT*RRGRGL Trigger: GAGTCCCCGTCCCCTTCTGCAGGTTGCCCAGGACAC...TTTTATACTACCCTTTAGATACAATCCACCCTTTTTCTCCACTGTGCCCAAAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000237411.2 |
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| CDS-3UTR TCA 90 bp | AGTGCCTCTGAGACAGGATGGGGTTCAGTAGCACCATGCAATGTTGGGGTATTGTGTAATGATGCAGTATaGTATCAGCCAAAAAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SASETGWGSVAPCNVGVLCNDAV*YQPKSR Trigger: CCTGCTTTTTGGCTGATATCATACTGCATCATTACA...CAATACCCCAACATTGCATGGTGCTACTGAACCCCATCCTGTCTCAGAGGCACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078691.12 |
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| CDS-3UTR CCA 90 bp | CGATACATTTGGCTTAATCAAAACTTCTCACCCCTATGTTGTGCAAGACAGAGAGACCCAAGATGCTGTTaGGTTCCAGGGGCAAGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: RYIWLNQNFSPLCCARQRDPRCC*VPGASC Trigger: ACAACTTGCCCCTGGAACCCAACAGCATCTTGGGTC...TCTCTGTCTTGCACAACATAGGGGTGAGAAGTTTTGATTAAGCCAAATGTATCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| 3UTR CAA 72 bp | GTTCTGACTTTGGGCACAGTGGAGAAAAAGGGTGGATaGTATCTAAAGGGTAGTATAAAAACAAACCTAGTT | + |
|
Preference number: 4 (lower is better) Translates to: VLTLGTVEKKGG*YLKGSIKTNLV Trigger: AACTAGGTTTGTTTTTATACTACCCTTTAGATACAATCCACCCTTTTTCTCCACTGTGCCCAAAGTCAGAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
||
| CDS-3UTR CAA 90 bp | GGTAGGGGGTGGGGTAGGGAGAGAGGTTTAGTCCAGCCAGGCACGTGGCTGGGGTTGTCCATCTCGGGGTaGGCAGGGGCGGCCGCCCCC | + |
|
Preference number: 5 (lower is better) Translates to: GRGWGRERGLVQPGTWLGLSISG*AGAAAP Trigger: GGGGGCGGCCGCCCCTGCCAACCCCGAGATGGACAA...CCCCAGCCACGTGCCTGGCTGGACTAAACCTCTCTCCCTACCCCACCCCCTACC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
||
| CDS-3UTR CAA 90 bp | GTGGCTCTCCAAATCAGGGGTGCCTGTTTGCTAAAGCGTCTTTGCCCTGGGGAGTTGTCCATCTCGGGGTaGGCAGGGGCGGCCGCCCCC | + |
|
Preference number: 5 (lower is better) Translates to: VALQIRGACLLKRLCPGELSISG*AGAAAP Trigger: GGGGGCGGCCGCCCCTGCCAACCCCGAGATGGACAA...CTCCCCAGGGCAAAGACGCTTTAGCAAACAGGCACCCCTGATTTGGAGAGCCAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
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| CDS-3UTR CAA 90 bp | CAGGTTCGAACCACCAGTCCCCAAGCCCTCCATGTTCTGACTTTGGGCACAGTGTTGTCCATCTCGGGGTaGGCAGGGGCGGCCGCCCCC | + |
|
Preference number: 5 (lower is better) Translates to: QVRTTSPQALHVLTLGTVLSISG*AGAAAP Trigger: GGGGGCGGCCGCCCCTGCCAACCCCGAGATGGACAA...CACTGTGCCCAAAGTCAGAACATGGAGGGCTTGGGGACTGGTGGTTCGAACCTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000237411.2 |
||
| CDS-3UTR CAA 90 bp | TTCAGTAGCACCATGCAATGTTGGGGTATTGATGACCCCTGGGCGGTGGCTCTCTTGTCCATCTCGGGGTaGGCAGGGGCGGCCGCCCCC | + |
|
Preference number: 5 (lower is better) Translates to: FSSTMQCWGIDDPWAVALLSISG*AGAAAP Trigger: GGGGGCGGCCGCCCCTGCCAACCCCGAGATGGACAA...GAGAGCCACCGCCCAGGGGTCATCAATACCCCAACATTGCATGGTGCTACTGAA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 16 nt. Matches the following 4 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000143158.3 ENSMUST00000237411.2 |
||
| CDS TCA 90 bp | CGCCGGTTAATATCATCTCCGATGAGAGCAAGCTGCCGACCCACCTaGCCCAAGATGCTGTTGGGTTCCAGGGGCAAGTTGTCCATCTCG | + |
|
Preference number: 5 (lower is better) Translates to: RRLISSPMRASCRPT*PKMLLGSRGKLSIS Trigger: CGAGATGGACAACTTGCCCCTGGAACCCAACAGCATCTTGGGTCAGGTGGGTCGGCAGCTTGCTCTCATCGGAGATGATATTAACCGGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000143158.3 |
||
| CDS TCA 90 bp | TTAAATAGGCTGTGCATGTTGCTGCTGGCCTGGAGGCGATCTTGGTaGAGAGTTCGTAGGCATTCCCGGCTGTGGGCTGAAGCTGTTCTA | + |
|
Preference number: 5 (lower is better) Translates to: LNRLCMLLLAWRRSW*RVRRHSRLWAEAVL Trigger: TAGAACAGCTTCAGCCCACAGCCGGGAATGCCTACGAACTCTTCACCAAGATCGCCTCCAGGCCAGCAGCAACATGCACAGCCTATTTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025034.12 |
||
| CDS CCA 72 bp | GAGCAAGCTGCCGACCCACCTGACCCAAGATGCTGTTaGGTTCCAGGGGCAAGTTGTCCATCTCGGGGTTGG | + |
|
Preference number: 6 (lower is better) Translates to: EQAADPPDPRCC*VPGASCPSRGW Trigger: CCAACCCCGAGATGGACAACTTGCCCCTGGAACCCAACAGCATCTTGGGTCAGGTGGGTCGGCAGCTTGCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000143158.3 ENSMUST00000237411.2 |
||
| CDS TCA 72 bp | CTGTGCATGTTGCTGCTGGCCTGGAGGCGATCTTGGTaGAGAGTTCGTAGGCATTCCCGGCTGTGGGCTGAA | + |
|
Preference number: 6 (lower is better) Translates to: LCMLLLAWRRSW*RVRRHSRLWAE Trigger: TTCAGCCCACAGCCGGGAATGCCTACGAACTCTTCACCAAGATCGCCTCCAGGCCAGCAGCAACATGCACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025034.12 |
||
| CDS TCA 72 bp | ATATCATCTCCGATGAGAGCAAGCTGCCGACCCACCTaGCCCAAGATGCTGTTGGGTTCCAGGGGCAAGTTG | + |
|
Preference number: 6 (lower is better) Translates to: ISSPMRASCRPT*PKMLLGSRGKL Trigger: CAACTTGCCCCTGGAACCCAACAGCATCTTGGGTCAGGTGGGTCGGCAGCTTGCTCTCATCGGAGATGATAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025034.12 ENSMUST00000078691.12 ENSMUST00000143158.3 |
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