RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BAIAP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025372

Ensembl transcript IDs: ENSMUST00000026436.10, ENSMUST00000075180.12, ENSMUST00000103021.10, ENSMUST00000106231.8, ENSMUST00000106233.2

Found 557 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCCTCTTaGGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCT +
Preference number: 1 (lower is better)
Translates to: PCCPSAGPSVGASAS*GSHLTRNTWDPAQA
Trigger: AGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR GCA 90 bp CTAGGGAGAGAAGGCCTAGAGGCGGCTGACAACCCTCCTCACCCCTaGCCTGCCTGCCGGGATGAGCAGAGCAGGCCAAGACACCAAGAC +
Preference number: 1 (lower is better)
Translates to: LGREGLEAADNPPHP*PACRDEQSRPRHQD
Trigger: GTCTTGGTGTCTTGGCCTGCTCTGCTCATCCCGGCAGGCAGGGCAGGGGTGAGGAGGGTTGTCAGCCGCCTCTAGGCCTTCTCTCCCTAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
3UTR TCA 90 bp CGGGCAGCACCTGCTCTTGCCTCCAGCTCCCACCAGGGCACTGCATaGGGTAACGCCACCCTGTGTTGGGATGCCGCACTCTGTTCTACA +
Preference number: 1 (lower is better)
Translates to: RAAPALASSSHQGTA*GNATLCWDAALCST
Trigger: TGTAGAACAGAGTGCGGCATCCCAACACAGGGTGGCGTTACCTCATGCAGTGCCCTGGTGGGAGCTGGAGGCAAGAGCAGGTGCTGCCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR GCA 90 bp AGACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTaGTTCTCCCTGGCCCTGACTGGCTGGCTGTACCCTCTGCGCCGC +
Preference number: 1 (lower is better)
Translates to: RHTQEEKLRRSWTRA*FSLALTGWLYPLRR
Trigger: GCGGCGCAGAGGGTACAGCCAGCCAGTCAGGGCCAGGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR GCA 90 bp CATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGATaGAGAGGAGCCCGTCAGCTGAGCAGAGGGGCTGATCTGTCATTG +
Preference number: 1 (lower is better)
Translates to: HALITLSWQVGTECR*RGARQLSRGADLSL
Trigger: CAATGACAGATCAGCCCCTCTGCTCAGCTGACGGGCTCCTCTGCATCGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
3UTR TCA 90 bp GGATGCCGCACTCTGTTCTACACATGCCTGCCCAGCAGTATCTGCTaGGGAAGAAGCCTAGTGCCTGGCTTGTGGGGTGAGCAGGGCCTG +
Preference number: 1 (lower is better)
Translates to: GCRTLFYTCLPSSIC*GRSLVPGLWGEQGL
Trigger: CAGGCCCTGCTCACCCCACAAGCCAGGCACTAGGCTTCTTCCTCAGCAGATACTGCTGGGCAGGCATGTGTAGAACAGAGTGCGGCATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR TCA 90 bp CTAGGGAGTGGGGCATTGTGGTCTTCTCTGGACAGGAACATGCCCTaGTCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGATGCAGAG +
Preference number: 1 (lower is better)
Translates to: LGSGALWSSLDRNMP*SPSAGRWGQSVDAE
Trigger: CTCTGCATCGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCAGAGAAGACCACAATGCCCCACTCCCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR CCA 90 bp AAACAGGATCTGTCTGTGTCTGAGCTGCTGCTGCTGCTGTCAGACTaGACCAGCCACGCCCTAGTCCTCAGCAGGCTTGCTGGGTTTGCT +
Preference number: 1 (lower is better)
Translates to: KQDLSVSELLLLLSD*TSHALVLSRLAGFA
Trigger: AGCAAACCCAGCAAGCCTGCTGAGGACTAGGGCGTGGCTGGTCCAGTCTGACAGCAGCAGCAGCAGCTCAGACACAGACAGATCCTGTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR TCA 90 bp GACAGAGTGTCGATGCAGAGGAGCCCGTCAGCTGAGCAGAGGGGCTaGTCTGTCATTGGTCACTGTTGGTTTCAGATGGACGTTGGCGAA +
Preference number: 1 (lower is better)
Translates to: DRVSMQRSPSAEQRG*SVIGHCWFQMDVGE
Trigger: TTCGCCAACGTCCATCTGAAACCAACAGTGACCAATGACAGATCAGCCCCTCTGCTCAGCTGACGGGCTCCTCTGCATCGACACTCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
3UTR CCA 90 bp TCAAAGGCTGGTCATAGAAAGATTCCCCAAAGGTGTGTGTATGTGTaGATGGGTGGGTGGGCTTGTCTTGAGGTCTTTGGAATGTTCGCA +
Preference number: 1 (lower is better)
Translates to: SKAGHRKIPQRCVYV*MGGWACLEVFGMFA
Trigger: TGCGAACATTCCAAAGACCTCAAGACAAGCCCACCCACCCATCCACACATACACACACCTTTGGGGAATCTTTCTATGACCAGCCTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR GCA 90 bp AAGTCCTGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGATaGAGAATAACAGTACGTACACCGGAGTCCATGCATATCTGTTTT +
Preference number: 1 (lower is better)
Translates to: KSCPVLEDARTLGVR*RITVRTPESMHICF
Trigger: AAAACAGATATGCATGGACTCCGGTGTACGTACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACAGGACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp CAGATGCATGCCCACCGCCGGCCAGGGGCAGCAGGCCCGCCCGCCACCCGGCAGCAGCACCATGGACCCTaGGGGATTTCAGAGTCTGGG +
Preference number: 2 (lower is better)
Translates to: QMHAHRRPGAAGPPATRQQHHGP*GISESG
Trigger: CCCAGACTCTGAAATCCCCCAGGGTCCATGGTGCTG...CTGCCGGGTGGCGGGCGGGCCTGCTGCCCCTGGCCGGCGGTGGGCATGCATCTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp GCCAGCTGTAGGGCTGAGCCCACTGGGCCTTGGGCTCCGCTGCCCAGAATTCAGGGAGCCCAGGACGGGTaGGTGGGTGGGTGGGTCCAG +
Preference number: 2 (lower is better)
Translates to: ASCRAEPTGPWAPLPRIQGAQDG*VGGWVQ
Trigger: CTGGACCCACCCACCCACCCACCCGTCCTGGGCTCC...CTGAATTCTGGGCAGCGGAGCCCAAGGCCCAGTGGGCTCAGCCCTACAGCTGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
3UTR-3UTR TCA 90 bp CGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAACGCTGCTTTGCCACTCAGCCACCTGCTGGGGGCATaGGCGCAGGGGCGCAGAGAG +
Preference number: 2 (lower is better)
Translates to: REHHRARAAGANAALPLSHLLGA*AQGRRE
Trigger: CTCTCTGCGCCCCTGCGCTCATGCCCCCAGCAGGTG...GCTGAGTGGCAAAGCAGCGTTGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR CAA 90 bp TCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCCTCTaGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGC +
Preference number: 2 (lower is better)
Translates to: SLLPKCWPLCWGIGL*RQPPHQEHLGSSPG
Trigger: GCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR-3UTR CCA 90 bp CGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGCTCACCAGGAACACCTaGGATCCAGCCCAGGCTGGG +
Preference number: 2 (lower is better)
Translates to: RPLEAATSPGTPGIQPRLLTRNT*DPAQAG
Trigger: CCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAG...CAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR-3UTR CCA 90 bp CCGGCAGGCCCCCACCCGGCAGTTAATGCTCAAGGCTGGGGACACCTGCTGGGGCCTCCATCACAGGAGTaGTCAGCTTCCTCAGGAGGC +
Preference number: 2 (lower is better)
Translates to: PAGPHPAVNAQGWGHLLGPPSQE*SASSGG
Trigger: GCCTCCTGAGGAAGCTGACCACTCCTGTGATGGAGG...CCCCAGCAGGTGTCCCCAGCCTTGAGCATTAACTGCCGGGTGGGGGCCTGCCGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp GCCAGCTGTAGGGCTGAGCCCACTGGGCCTTGGGCTCCGCTGCCCAGAATTCAGCTAGTGCCTGGCTTGTaGGGTGAGCAGGGCCTGGCT +
Preference number: 2 (lower is better)
Translates to: ASCRAEPTGPWAPLPRIQLVPGL*GEQGLA
Trigger: AGCCAGGCCCTGCTCACCCCACAAGCCAGGCACTAG...CTGAATTCTGGGCAGCGGAGCCCAAGGCCCAGTGGGCTCAGCCCTACAGCTGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp ATGAGCGCAGGGGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCGGACGGGTGGGTGGGTaGGTGGGTCCAGCTCTGGTG +
Preference number: 2 (lower is better)
Translates to: MSAGAQRAAPWTLGDFRVGRVGG*VGPALV
Trigger: CACCAGAGCTGGACCCACCCACCCACCCACCCGTCC...GACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCCCCTGCGCTCAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
3UTR CAA 90 bp CGTCGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAACGCTGCTTaGCCACTCAGCCGGCAGGCCCCCACCCGGCAGTTAATGCTCAAG +
Preference number: 2 (lower is better)
Translates to: RREHHRARAAGANAA*PLSRQAPTRQLMLK
Trigger: CTTGAGCATTAACTGCCGGGTGGGGGCCTGCCGGCTGAGTGGCAAAGCAGCGTTGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACGACG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp GCCAGCTGTAGGGCTGAGCCCACTGGGCCTTGGGCTCCGCTGCCCAGAATTCAGCAGGAGGCTCCCAAGTaGCCAGGCCCCTTTTCTTGG +
Preference number: 2 (lower is better)
Translates to: ASCRAEPTGPWAPLPRIQQEAPK*PGPFSW
Trigger: CCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTG...CTGAATTCTGGGCAGCGGAGCCCAAGGCCCAGTGGGCTCAGCCCTACAGCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp GGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGAGGGATCCAGCCCAGGCTaGGCCGATGTGAGGCGAGGC +
Preference number: 2 (lower is better)
Translates to: GNRLPSLQAGRMSSLCPEGSSPG*ADVRRG
Trigger: GCCTCGCCTCACATCGGCCCAGCCTGGGCTGGATCC...CTCTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR CAA 90 bp CAGTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTaGGGGCATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCT +
Preference number: 2 (lower is better)
Translates to: QLGSEVPVAQVLAPL*GHRPLEAATSPGTP
Trigger: AGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR CAA 90 bp TTGAGGTCTTTGGAATGTTCGCATGTGGCCGGGCAGCACCTGCTCTaGCCTCCAGCTCCCACCAGGGCACTGCATGAGGTAACGCCACCC +
Preference number: 2 (lower is better)
Translates to: LRSLECSHVAGQHLL*PPAPTRALHEVTPP
Trigger: GGGTGGCGTTACCTCATGCAGTGCCCTGGTGGGAGCTGGAGGCAAGAGCAGGTGCTGCCCGGCCACATGCGAACATTCCAAAGACCTCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp GCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTCTGCCAGGCCCCTTTTCTTaGTGCAGCCCTTGGAAGGGG +
Preference number: 2 (lower is better)
Translates to: AGFANHIRGASAASQGLLPGPFS*CSPWKG
Trigger: CCCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGG...CAGAAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp GCCAGCTGTAGGGCTGAGCCCACTGGGCCTTGGGCTCCGCTGCCCAGAATTCAGAAACTTAGGAGGAGCTaGACCAGAGCCTGCTTCTCC +
Preference number: 2 (lower is better)
Translates to: ASCRAEPTGPWAPLPRIQKLRRS*TRACFS
Trigger: GGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTT...CTGAATTCTGGGCAGCGGAGCCCAAGGCCCAGTGGGCTCAGCCCTACAGCTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR TCA 90 bp GCCAGCTGTAGGGCTGAGCCCACTGGGCCTTGGGCTCCGCTGCCCAGAATTCAGAAAACCAGTAGCCACTaGGTCCAGTGTGCCTGTTTC +
Preference number: 2 (lower is better)
Translates to: ASCRAEPTGPWAPLPRIQKTSSH*VQCACF
Trigger: GAAACAGGCACACTGGACTCAGTGGCTACTGGTTTT...CTGAATTCTGGGCAGCGGAGCCCAAGGCCCAGTGGGCTCAGCCCTACAGCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR TCA 90 bp GCCAGCTGTAGGGCTGAGCCCACTGGGCCTTGGGCTCCGCTGCCCAGAATTCAGCTTTATTCCAACAGTTaGCCGCAGTACAGGGCACAG +
Preference number: 2 (lower is better)
Translates to: ASCRAEPTGPWAPLPRIQLYSNS*PQYRAQ
Trigger: CTGTGCCCTGTACTGCGGTCAACTGTTGGAATAAAG...CTGAATTCTGGGCAGCGGAGCCCAAGGCCCAGTGGGCTCAGCCCTACAGCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp TCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAAAAGCACAGGACAGCTaGCCAGATGCATGCCCACCG +
Preference number: 2 (lower is better)
Translates to: SSGGSQVPRPLFLVQPLEKAQDS*PDACPP
Trigger: CGGTGGGCATGCATCTGGGCAGCTGTCCTGTGCTTT...TTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp ACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGATGCCCTCAGCTGGCAGGTaGGGACAGAGTGTCGATGCA +
Preference number: 2 (lower is better)
Translates to: TGTCPDHPQLAGGDRVSMPSAGR*GQSVDA
Trigger: TGCATCGACACTCTGTCCCCACCTGCCAGCTGAGGG...CATCGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR-3UTR TCA 90 bp AAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCGAGGAGCCCGTCAGCTaGGCAGAGGGGCTGATCTGT +
Preference number: 2 (lower is better)
Translates to: KVSMGIGSLPCKPAECPLEEPVS*AEGLIC
Trigger: ACAGATCAGCCCCTCTGCTCAGCTGACGGGCTCCTC...GAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
3UTR-3UTR CCA 90 bp AAAGGGATGTGCGTCGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAACGCTGCAGAGAGCAGCACCATaGACCCTGGGGGATTTCAGA +
Preference number: 2 (lower is better)
Translates to: KGMCVVNTTGLGQQVPTLQRAAP*TLGDFR
Trigger: TCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTG...CAGCGTTGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACGACGCACATCCCTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp AGGCTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCAGAGAGCAGCACCATaGACCCTGGGGGATTTCAGA +
Preference number: 2 (lower is better)
Translates to: RLAGFANHIRGASAASQGQRAAP*TLGDFR
Trigger: TCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTG...CCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp CTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTGTTAATGCTCAAGGCTaGGGACACCTGCTGGGGGCA +
Preference number: 2 (lower is better)
Translates to: LAGFANHIRGASAASQGLVNAQG*GHLLGA
Trigger: TGCCCCCAGCAGGTGTCCCCAGCCTTGAGCATTAAC...AAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp CTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTCCTCCATCACAGGAGTaGTCAGCTTCCTCAGGAGGC +
Preference number: 2 (lower is better)
Translates to: LAGFANHIRGASAASQGLPPSQE*SASSGG
Trigger: GCCTCCTGAGGAAGCTGACCACTCCTGTGATGGAGG...AAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR TCA 90 bp TCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAATGGGTGGGCTTGTCTTaGGGTCTTTGGAATGTTCGC +
Preference number: 2 (lower is better)
Translates to: SSGGSQVPRPLFLVQPLEWVGLS*GLWNVR
Trigger: GCGAACATTCCAAAGACCTCAAGACAAGCCCACCCA...TTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp CTGCTCTTGCCTCCAGCTCCCACCAGGGCACTGCATGAGGTAACGCCACCCTGTTGTTCTACACATGCCTaGCCAGCAGTATCTGCTGAG +
Preference number: 2 (lower is better)
Translates to: LLLPPAPTRALHEVTPPCCSTHA*PAVSAE
Trigger: CTCAGCAGATACTGCTGGGCAGGCATGTGTAGAACA...ACAGGGTGGCGTTACCTCATGCAGTGCCCTGGTGGGAGCTGGAGGCAAGAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp CAGGACCCTAAGTCCTGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGAGGAACCGGTGGAGACTaGGGGGAGCTCTTCAGAGCA +
Preference number: 2 (lower is better)
Translates to: QDPKSCPVLEDARTLGVRGTGGD*GELFRA
Trigger: TGCTCTGAAGAGCTCCCCCCAGTCTCCACCGGTTCC...TCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACAGGACTTAGGGTCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp CTTAGAAAAGGGATGTGCGTCGTGAACACCACAGGGCTAGGGCAGCAGGTGCCACAGCACCATGGACCCTaGGGGATTTCAGAGTCTGGG +
Preference number: 2 (lower is better)
Translates to: LRKGMCVVNTTGLGQQVPQHHGP*GISESG
Trigger: CCCAGACTCTGAAATCCCCCAGGGTCCATGGTGCTG...TGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACGACGCACATCCCTTTTCTAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp CTTAGAAAAGGGATGTGCGTCGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAGTTAATGCTCAAGGCTaGGGACACCTGCTGGGGGCA +
Preference number: 2 (lower is better)
Translates to: LRKGMCVVNTTGLGQQVPVNAQG*GHLLGA
Trigger: TGCCCCCAGCAGGTGTCCCCAGCCTTGAGCATTAAC...TGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACGACGCACATCCCTTTTCTAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp GACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGCTTCTCCCCCAGGCCCCTTTTCTTaGTGCAGCCCTTGGAAGGGG +
Preference number: 2 (lower is better)
Translates to: DTHKRRNLGGAGPEPASPPGPFS*CSPWKG
Trigger: CCCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGG...GGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp GACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGCTTCTCCCAGCGTCCTCACACTGTaGACACCAGCGTGCCACTGC +
Preference number: 2 (lower is better)
Translates to: DTHKRRNLGGAGPEPASPSVLTL*TPACHC
Trigger: GCAGTGGCACGCTGGTGTCCACAGTGTGAGGACGCT...GGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
3UTR-3UTR TCA 90 bp AGTTACCAAGACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTCCCTGCCTGCCGGGATaGGCAGAGCAGGCCAAGACA +
Preference number: 2 (lower is better)
Translates to: SYQDTHKRRNLGGAGPEPPCLPG*AEQAKT
Trigger: TGTCTTGGCCTGCTCTGCTCATCCCGGCAGGCAGGG...AGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTCTTGGTAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp CATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCACTCTGGACAGGAACATaGCCTGATCACCCTCAGCTG +
Preference number: 2 (lower is better)
Translates to: HGNRLPSLQAGRMSSLCPLWTGT*PDHPQL
Trigger: CAGCTGAGGGTGATCAGGGCATGTTCCTGTCCAGAG...TGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR-3UTR CCA 90 bp ATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGGGGAGTGGGGCATTGTaGTCTTCTCTGGACAGGAAC +
Preference number: 2 (lower is better)
Translates to: MGIGSLPCKPAECPLCVQGSGAL*SSLDRN
Trigger: GTTCCTGTCCAGAGAAGACCACAATGCCCCACTCCC...CTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR-3UTR CCA 90 bp GGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGGGGATTTCAGAGTCTaGGATCACCAACCAAAAGGC +
Preference number: 2 (lower is better)
Translates to: GVVSFLRRLPSAQAPFLGGDFRV*DHQPKG
Trigger: GCCTTTTGGTTGGTGATCCCAGACTCTGAAATCCCC...ACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp GACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGCTTCTCCCCCTCCATCACAGGAGTaGTCAGCTTCCTCAGGAGGC +
Preference number: 2 (lower is better)
Translates to: DTHKRRNLGGAGPEPASPPPSQE*SASSGG
Trigger: GCCTCCTGAGGAAGCTGACCACTCCTGTGATGGAGG...GGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR TCA 90 bp TCCATCACAGGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTCCAGAATTCAGTGTGTaGAGAGACAAAACCAGTAGC +
Preference number: 2 (lower is better)
Translates to: SITGVVSFLRRLPSAQAPPEFSV*RDKTSS
Trigger: GCTACTGGTTTTGTCTCTTCACACACTGAATTCTGG...AGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCCTGTGATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp CTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTACTCTGTTCTACACATaGCTGCCCAGCAGTATCTGC +
Preference number: 2 (lower is better)
Translates to: LAGFANHIRGASAASQGLTLFYT*LPSSIC
Trigger: GCAGATACTGCTGGGCAGGCATGTGTAGAACAGAGT...AAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp TGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACCGGGGAACCGGTGGAGACTaGGGGGAGCTCTTCAGAGCA +
Preference number: 2 (lower is better)
Translates to: WERKQPKNKPTRAEEGNRGTGGD*GELFRA
Trigger: TGCTCTGAAGAGCTCCCCCCAGTCTCCACCGGTTCC...CCGGTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp CAGGACCCTAAGTCCTGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGACAGAGAGCAGCACCATaGACCCTGGGGGATTTCAGA +
Preference number: 2 (lower is better)
Translates to: QDPKSCPVLEDARTLGVRQRAAP*TLGDFR
Trigger: TCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTG...TCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACAGGACTTAGGGTCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp GCCAGCTGTAGGGCTGAGCCCACTGGGCCTTGGGCTCCGCTGCCCAGAATTCAGGTACACCGGAGTCCATaGATATCTGTTTTTGTTTTT +
Preference number: 2 (lower is better)
Translates to: ASCRAEPTGPWAPLPRIQVHRSP*ISVFVF
Trigger: AAAAACAAAAACAGATATGCATGGACTCCGGTGTAC...CTGAATTCTGGGCAGCGGAGCCCAAGGCCCAGTGGGCTCAGCCCTACAGCTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp GGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTACTCTGGGGGTCAGATaGAGAATAACAGTACGTACA +
Preference number: 2 (lower is better)
Translates to: GVVSFLRRLPSAQAPFLGTLGVR*RITVRT
Trigger: TGTACGTACTGTTATTCTGCATCTGACCCCCAGAGT...ACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp TTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCCTGATCACCCTCAGCTaGCAGGTGGGGACAGAGTGT +
Preference number: 2 (lower is better)
Translates to: FKSQHGNRLPSLQAGRMSLITLS*QVGTEC
Trigger: ACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAG...GGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR-3UTR CCA 90 bp GTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGGGCTGATCTGTCATTaGTCACTGTTGGTTTCAGAT +
Preference number: 2 (lower is better)
Translates to: VRIRGPCCPSAGPSVGASGLICH*SLLVSD
Trigger: ATCTGAAACCAACAGTGACCAATGACAGATCAGCCC...CGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
3UTR-3UTR TCA 90 bp GCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTACGTACACCGGAGTCCATGTGGGTGGGCTTGTCTTaGGGTCTTTGGAATGTTCGC +
Preference number: 2 (lower is better)
Translates to: ARTLGVRCRITVRTPESMWVGLS*GLWNVR
Trigger: GCGAACATTCCAAAGACCTCAAGACAAGCCCACCCA...CATGGACTCCGGTGTACGTACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR TCA 90 bp TGTGAAGAGACAAAACCAGTAGCCACTGAGTCCAGTGTGCCTGTTTCTAAAGTTGCTTCTCCCTGGCCCTaGCTGGCTGGCTGTACCCTC +
Preference number: 2 (lower is better)
Translates to: CEETKPVATESSVPVSKVASPWP*LAGCTL
Trigger: GAGGGTACAGCCAGCCAGTCAGGGCCAGGGAGAAGC...AACTTTAGAAACAGGCACACTGGACTCAGTGGCTACTGGTTTTGTCTCTTCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp TGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACCGGACACCAGCGTGCCACTaGCACTGTGGAACAAAGCAC +
Preference number: 2 (lower is better)
Translates to: WERKQPKNKPTRAEEGNRTPACH*HCGTKH
Trigger: GTGCTTTGTTCCACAGTGGCAGTGGCACGCTGGTGT...CCGGTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp AAAAAGTTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGACTGTTGCCCAAGTGCTaGCCCCTCTGTTGGGGCATC +
Preference number: 2 (lower is better)
Translates to: KKFKSQHGNRLPSLQAGRLLPKC*PLCWGI
Trigger: GATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAG...TCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAACTTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR-3UTR CCA 90 bp CAGGACCCTAAGTCCTGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGAGGGGATTTCAGAGTCTaGGATCACCAACCAAAAGGC +
Preference number: 2 (lower is better)
Translates to: QDPKSCPVLEDARTLGVRGDFRV*DHQPKG
Trigger: GCCTTTTGGTTGGTGATCCCAGACTCTGAAATCCCC...TCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACAGGACTTAGGGTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp AGTTACCAAGACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTCAGCACCATGGACCCTaGGGGATTTCAGAGTCTGGG +
Preference number: 2 (lower is better)
Translates to: SYQDTHKRRNLGGAGPEPQHHGP*GISESG
Trigger: CCCAGACTCTGAAATCCCCCAGGGTCCATGGTGCTG...AGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTCTTGGTAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR TCA 90 bp AAATTAGAACAACACAGAAAGTTCTTTACACAGGTCCAGGTTCTGGCTGTGTTTCACCTGCTGGGGGCATaGGCGCAGGGGCGCAGAGAG +
Preference number: 2 (lower is better)
Translates to: KLEQHRKFFTQVQVLAVFHLLGA*AQGRRE
Trigger: CTCTCTGCGCCCCTGCGCTCATGCCCCCAGCAGGTG...AAACACAGCCAGAACCTGGACCTGTGTAAAGAACTTTCTGTGTTGTTCTAATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp GCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTACGTACACCGGAGTCCATGACTCTGTTCTACACATaGCTGCCCAGCAGTATCTGC +
Preference number: 2 (lower is better)
Translates to: ARTLGVRCRITVRTPESMTLFYT*LPSSIC
Trigger: GCAGATACTGCTGGGCAGGCATGTGTAGAACAGAGT...CATGGACTCCGGTGTACGTACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp CTAAAGTTACCAAGACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGACTGAGCTGCTGCTGCTaGTGTCAGACTGGACCAGCC +
Preference number: 2 (lower is better)
Translates to: LKLPRHTQEEKLRRSWTRLSCCC*CQTGPA
Trigger: GGCTGGTCCAGTCTGACAGCAGCAGCAGCAGCTCAG...TCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTCTTGGTAACTTTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp AAATTAGAACAACACAGAAAGTTCTTTACACAGGTCCAGGTTCTGGCTGTGTTTCACCCGGCAGAGCCCTaGCCAGCCAGCAGCCAGGCT +
Preference number: 2 (lower is better)
Translates to: KLEQHRKFFTQVQVLAVFHPAEP*PASSQA
Trigger: AGCCTGGCTGCTGGCTGGCCAGGGCTCTGCCGGGTG...AAACACAGCCAGAACCTGGACCTGTGTAAAGAACTTTCTGTGTTGTTCTAATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
3UTR-3UTR TCA 90 bp ATAAATAAAGCCTTTATTCCAACAGTTGACCGCAGTACAGGGCACAGTTCAGATCCCTTGGAAGGGGCCTaGGGCAGGTCAAGGTCCCTG +
Preference number: 2 (lower is better)
Translates to: INKAFIPTVDRSTGHSSDPLEGA*GRSRSL
Trigger: CAGGGACCTTGACCTGCCTCAGGCCCCTTCCAAGGG...ATCTGAACTGTGCCCTGTACTGCGGTCAACTGTTGGAATAAAGGCTTTATTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp GGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGTACACCGGAGTCCATaGATATCTGTTTTTGTTTTT +
Preference number: 2 (lower is better)
Translates to: GVVSFLRRLPSAQAPFLGVHRSP*ISVFVF
Trigger: AAAAACAAAAACAGATATGCATGGACTCCGGTGTAC...ACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp TGTGAAGAGACAAAACCAGTAGCCACTGAGTCCAGTGTGCCTGTTTCTAAAGTTGGAACCGGTGGAGACTaGGGGGAGCTCTTCAGAGCA +
Preference number: 2 (lower is better)
Translates to: CEETKPVATESSVPVSKVGTGGD*GELFRA
Trigger: TGCTCTGAAGAGCTCCCCCCAGTCTCCACCGGTTCC...AACTTTAGAAACAGGCACACTGGACTCAGTGGCTACTGGTTTTGTCTCTTCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp TTGCTGTTTTGTGTCTACATTCATCCATTGCACATGGAATCCCCTGGATTTGAAAGCTGGACCAGAGCCTaGTTCTCCCTGGCCCTGACT +
Preference number: 2 (lower is better)
Translates to: LLFCVYIHPLHMESPGFESWTRA*FSLALT
Trigger: AGTCAGGGCCAGGGAGAAGCAGGCTCTGGTCCAGCT...TTCAAATCCAGGGGATTCCATGTGCAATGGATGAATGTAGACACAAAACAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp CAAGTTTGCTGTTTTGTGTCTACATTCATCCATTGCACATGGAATCCCCTGGATTTCAGAGCAGCTGCCTaGGGTCAGCGTCCTCACACT +
Preference number: 2 (lower is better)
Translates to: QVCCFVSTFIHCTWNPLDFRAAA*GQRPHT
Trigger: AGTGTGAGGACGCTGACCCCAGGCAGCTGCTCTGAA...ATCCAGGGGATTCCATGTGCAATGGATGAATGTAGACACAAAACAGCAAACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp TGTGAAGAGACAAAACCAGTAGCCACTGAGTCCAGTGTGCCTGTTTCTAAAGTTCACCCTGTGTTGGGATaGCGCACTCTGTTCTACACA +
Preference number: 2 (lower is better)
Translates to: CEETKPVATESSVPVSKVHPVLG*RTLFYT
Trigger: TGTGTAGAACAGAGTGCGGCATCCCAACACAGGGTG...AACTTTAGAAACAGGCACACTGGACTCAGTGGCTACTGGTTTTGTCTCTTCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp TTAAATATAAAACAGGATCTGTCTGTGTCTGAGCTGCTGCTGCTGCTGTCAGACAAACTTAGGAGGAGCTaGACCAGAGCCTGCTTCTCC +
Preference number: 2 (lower is better)
Translates to: LNIKQDLSVSELLLLLSDKLRRS*TRACFS
Trigger: GGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTT...GTCTGACAGCAGCAGCAGCAGCTCAGACACAGACAGATCCTGTTTTATATTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR TCA 90 bp TTAAATATAAAACAGGATCTGTCTGTGTCTGAGCTGCTGCTGCTGCTGTCAGACCTTTATTCCAACAGTTaGCCGCAGTACAGGGCACAG +
Preference number: 2 (lower is better)
Translates to: LNIKQDLSVSELLLLLSDLYSNS*PQYRAQ
Trigger: CTGTGCCCTGTACTGCGGTCAACTGTTGGAATAAAG...GTCTGACAGCAGCAGCAGCAGCTCAGACACAGACAGATCCTGTTTTATATTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp GCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTACGTACACCGGAGTCCATGGTACACCGGAGTCCATaGATATCTGTTTTTGTTTTT +
Preference number: 2 (lower is better)
Translates to: ARTLGVRCRITVRTPESMVHRSP*ISVFVF
Trigger: AAAAACAAAAACAGATATGCATGGACTCCGGTGTAC...CATGGACTCCGGTGTACGTACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp TTGCTGTTTTGTGTCTACATTCATCCATTGCACATGGAATCCCCTGGATTTGAAAGGCTACCTGGCCTCTaGGAGGATGATGAACCCAGA +
Preference number: 2 (lower is better)
Translates to: LLFCVYIHPLHMESPGFERLPGL*EDDEPR
Trigger: TCTGGGTTCATCATCCTCCCAGAGGCCAGGTAGCCT...TTCAAATCCAGGGGATTCCATGTGCAATGGATGAATGTAGACACAAAACAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp TTGCTGTTTTGTGTCTACATTCATCCATTGCACATGGAATCCCCTGGATTTGAACACCCTGTGTTGGGATaGCGCACTCTGTTCTACACA +
Preference number: 2 (lower is better)
Translates to: LLFCVYIHPLHMESPGFEHPVLG*RTLFYT
Trigger: TGTGTAGAACAGAGTGCGGCATCCCAACACAGGGTG...TTCAAATCCAGGGGATTCCATGTGCAATGGATGAATGTAGACACAAAACAGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp ATAAATAAAGCCTTTATTCCAACAGTTGACCGCAGTACAGGGCACAGTTCAGATCACCCTGTGTTGGGATaGCGCACTCTGTTCTACACA +
Preference number: 2 (lower is better)
Translates to: INKAFIPTVDRSTGHSSDHPVLG*RTLFYT
Trigger: TGTGTAGAACAGAGTGCGGCATCCCAACACAGGGTG...ATCTGAACTGTGCCCTGTACTGCGGTCAACTGTTGGAATAAAGGCTTTATTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp CAAGTTTGCTGTTTTGTGTCTACATTCATCCATTGCACATGGAATCCCCTGGATGGGGATTTCAGAGTCTaGGATCACCAACCAAAAGGC +
Preference number: 2 (lower is better)
Translates to: QVCCFVSTFIHCTWNPLDGDFRV*DHQPKG
Trigger: GCCTTTTGGTTGGTGATCCCAGACTCTGAAATCCCC...ATCCAGGGGATTCCATGTGCAATGGATGAATGTAGACACAAAACAGCAAACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CCA 90 bp TTGCTGTTTTGTGTCTACATTCATCCATTGCACATGGAATCCCCTGGATTTGAAAAACTTAGGAGGAGCTaGACCAGAGCCTGCTTCTCC +
Preference number: 2 (lower is better)
Translates to: LLFCVYIHPLHMESPGFEKLRRS*TRACFS
Trigger: GGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTT...TTCAAATCCAGGGGATTCCATGTGCAATGGATGAATGTAGACACAAAACAGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR GCA 90 bp ATAAATAAAGCCTTTATTCCAACAGTTGACCGCAGTACAGGGCACAGTTCAGATCCACTGAGTCCAGTGTaGCTGTTTCTAAAGTTACCA +
Preference number: 2 (lower is better)
Translates to: INKAFIPTVDRSTGHSSDPLSPV*LFLKLP
Trigger: TGGTAACTTTAGAAACAGGCACACTGGACTCAGTGG...ATCTGAACTGTGCCCTGTACTGCGGTCAACTGTTGGAATAAAGGCTTTATTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CAA 90 bp GATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCCTCGTGCTGGCCCCTCTGTaGGGGCATCGGCCTCTTGAG +
Preference number: 3 (lower is better)
Translates to: DQRSLLPKCWPLCWGIGLVLAPL*GHRPLE
Trigger: CTCAAGAGGCCGATGCCCCAACAGAGGGGCCAGCAC...GAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR-3UTR CAA 90 bp TTGGGGCATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGGTGCTGGCCCCTCTGTaGGGGCATCGGCCTCTTGAG +
Preference number: 3 (lower is better)
Translates to: LGHRPLEAATSPGTPGIQVLAPL*GHRPLE
Trigger: CTCAAGAGGCCGATGCCCCAACAGAGGGGCCAGCAC...CTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCCCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR-3UTR CAA 90 bp TCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGGCAGCACCTGCTCTaGCCTCCAGCTCCCACCAGG +
Preference number: 3 (lower is better)
Translates to: SSGGSQVPRPLFLVQPLEGQHLL*PPAPTR
Trigger: CCTGGTGGGAGCTGGAGGCAAGAGCAGGTGCTGCCC...TTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR TCA 72 bp CCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCCTCTTaGGGCAGCCACCTCACCAGGAACACCTGGGATCCA +
Preference number: 3 (lower is better)
Translates to: PSAGPSVGASAS*GSHLTRNTWDP
Trigger: TGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR TCA 72 bp CCTGCTCTTGCCTCCAGCTCCCACCAGGGCACTGCATaGGGTAACGCCACCCTGTGTTGGGATGCCGCACTC +
Preference number: 3 (lower is better)
Translates to: PALASSSHQGTA*GNATLCWDAAL
Trigger: GAGTGCGGCATCCCAACACAGGGTGGCGTTACCTCATGCAGTGCCCTGGTGGGAGCTGGAGGCAAGAGCAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CAA 90 bp ATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCCTAGGGAGTGGGGCATaGTGGTCTTCTCTGGACAGG +
Preference number: 3 (lower is better)
Translates to: IGLLRQPPHQEHLGSSPGLGSGA*WSSLDR
Trigger: CCTGTCCAGAGAAGACCACAATGCCCCACTCCCTAG...GCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR GCA 72 bp ATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGATaGAGAGGAGCCCGTCAGCTGAGCAGAGGGGCTGAT +
Preference number: 3 (lower is better)
Translates to: ITLSWQVGTECR*RGARQLSRGAD
Trigger: ATCAGCCCCTCTGCTCAGCTGACGGGCTCCTCTGCATCGACACTCTGTCCCCACCTGCCAGCTGAGGGTGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
3UTR-3UTR CAA 90 bp GCCTTGGGCTCCGCTGCCCAGAATTCAGTGTGTGAAGAGACAAAACCAGTAGCCGGTGCCAACGCTGCTTaGCCACTCAGCCGGCAGGCC +
Preference number: 3 (lower is better)
Translates to: ALGSAAQNSVCEETKPVAGANAA*PLSRQA
Trigger: GGCCTGCCGGCTGAGTGGCAAAGCAGCGTTGGCACC...GGCTACTGGTTTTGTCTCTTCACACACTGAATTCTGGGCAGCGGAGCCCAAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CAA 90 bp GACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGCTTCTCCCGGGCAGCACCTGCTCTaGCCTCCAGCTCCCACCAGG +
Preference number: 3 (lower is better)
Translates to: DTHKRRNLGGAGPEPASPGQHLL*PPAPTR
Trigger: CCTGGTGGGAGCTGGAGGCAAGAGCAGGTGCTGCCC...GGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CAA 90 bp GGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTCAGCAGCCGCAGCCCTaGGTGAGGATCTACCTGGTT +
Preference number: 3 (lower is better)
Translates to: GVVSFLRRLPSAQAPFLGQQPQP*VRIYLV
Trigger: AACCAGGTAGATCCTCACCAAGGGCTGCGGCTGCTG...ACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
3UTR GCA 72 bp TCTCGAGGTTCCACAGTTAGGATCAGAGGTCCCTGTTaGCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCC +
Preference number: 3 (lower is better)
Translates to: SRGSTVRIRGPC*PSAGPSVGASA
Trigger: GGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAACTGTGGAACCTCGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR CCA 72 bp TCAGAGCAGCTGCCTGGGGTCAGCGTCCTCACACTGTaGACACCAGCGTGCCACTGCCACTGTGGAACAAAG +
Preference number: 3 (lower is better)
Translates to: SEQLPGVSVLTL*TPACHCHCGTK
Trigger: CTTTGTTCCACAGTGGCAGTGGCACGCTGGTGTCCACAGTGTGAGGACGCTGACCCCAGGCAGCTGCTCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
3UTR-3UTR CAA 90 bp AGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCGATCAGAGGTCCCTGTaGCCCAAGTGCTGGCCCCTC +
Preference number: 3 (lower is better)
Translates to: SMGIGSLPCKPAECPLCVDQRSL*PKCWPL
Trigger: GAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATC...GACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR TCA 72 bp GGGGCATTGTGGTCTTCTCTGGACAGGAACATGCCCTaGTCACCCTCAGCTGGCAGGTGGGGACAGAGTGTC +
Preference number: 3 (lower is better)
Translates to: GALWSSLDRNMP*SPSAGRWGQSV
Trigger: GACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCAGAGAAGACCACAATGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR GCA 72 bp GGAGTGGGGCATTGTGGTCTTCTCTGGACAGGAACATaGCCTGATCACCCTCAGCTGGCAGGTGGGGACAGA +
Preference number: 3 (lower is better)
Translates to: GVGHCGLLWTGT*PDHPQLAGGDR
Trigger: TCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCAGAGAAGACCACAATGCCCCACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR GCA 72 bp CAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTaGTTCTCCCTGGCCCTGACTGGCTGGCTGTACCCT +
Preference number: 3 (lower is better)
Translates to: QEEKLRRSWTRA*FSLALTGWLYP
Trigger: AGGGTACAGCCAGCCAGTCAGGGCCAGGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR CCA 72 bp TTCTCTGGACAGGAACATGCCCTGATCACCCTCAGCTaGCAGGTGGGGACAGAGTGTCGATGCAGAGGAGCC +
Preference number: 3 (lower is better)
Translates to: FSGQEHALITLS*QVGTECRCRGA
Trigger: GGCTCCTCTGCATCGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCAGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR CCA 72 bp AGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTaGGATCACCAACCAAAAGGCAGGAGCGGGTGGGAA +
Preference number: 3 (lower is better)
Translates to: RAAPWTLGDFRV*DHQPKGRSGWE
Trigger: TTCCCACCCGCTCCTGCCTTTTGGTTGGTGATCCCAGACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CAA 90 bp GGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTCTTGTCTTGAGGTCTTaGGAATGTTCGCATGTGGCC +
Preference number: 3 (lower is better)
Translates to: GVVSFLRRLPSAQAPFLGLVLRS*ECSHVA
Trigger: GGCCACATGCGAACATTCCAAAGACCTCAAGACAAG...ACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CAA 90 bp AGTTACCAAGACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTCCCAGGCCCCTTTTCTaGGTGCAGCCCTTGGAAGGG +
Preference number: 3 (lower is better)
Translates to: SYQDTHKRRNLGGAGPEPPRPLF*VQPLEG
Trigger: CCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGG...AGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTCTTGGTAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CAA 90 bp TTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGTGTCATTGGTCACTGTaGGTTTCAGATGGACGTTGG +
Preference number: 3 (lower is better)
Translates to: LGSEVPVAQVLAPLLGHRCHWSL*VSDGRW
Trigger: CCAACGTCCATCTGAAACCAACAGTGACCAATGACA...CCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
3UTR GCA 72 bp AGTTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTaGAAGCCGGCAGAATGTCCTCTCTGTGTCCAGAGG +
Preference number: 3 (lower is better)
Translates to: SLKVSMGIGSLP*KPAECPLCVQR
Trigger: CCTCTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
3UTR-3UTR CAA 90 bp TTAAATATAAAACAGGATCTGTCTGTGTCTGAGCTGCTGCTGCTGCTGTCAGACCCCAGGCCCCTTTTCTaGGTGCAGCCCTTGGAAGGG +
Preference number: 3 (lower is better)
Translates to: LNIKQDLSVSELLLLLSDPRPLF*VQPLEG
Trigger: CCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGG...GTCTGACAGCAGCAGCAGCAGCTCAGACACAGACAGATCCTGTTTTATATTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR GCA 72 bp CCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGATaGAGAATAACAGTACGTACACCGGAGTCCATGCAT +
Preference number: 3 (lower is better)
Translates to: PVLEDARTLGVR*RITVRTPESMH
Trigger: ATGCATGGACTCCGGTGTACGTACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CAA 90 bp AGTTACCAAGACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTCTTGTCTTGAGGTCTTaGGAATGTTCGCATGTGGCC +
Preference number: 3 (lower is better)
Translates to: SYQDTHKRRNLGGAGPEPLVLRS*ECSHVA
Trigger: GGCCACATGCGAACATTCCAAAGACCTCAAGACAAG...AGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTCTTGGTAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CAA 90 bp CTAAAGTTACCAAGACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGTGGGTGGGCTTGTCTaGAGGTCTTTGGAATGTTCG +
Preference number: 3 (lower is better)
Translates to: LKLPRHTQEEKLRRSWTRVGGLV*RSLECS
Trigger: CGAACATTCCAAAGACCTCAAGACAAGCCCACCCAC...TCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTCTTGGTAACTTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CAA 90 bp ATAAATAAAGCCTTTATTCCAACAGTTGACCGCAGTACAGGGCACAGTTCAGATGTGGGTGGGCTTGTCTaGAGGTCTTTGGAATGTTCG +
Preference number: 3 (lower is better)
Translates to: INKAFIPTVDRSTGHSSDVGGLV*RSLECS
Trigger: CGAACATTCCAAAGACCTCAAGACAAGCCCACCCAC...ATCTGAACTGTGCCCTGTACTGCGGTCAACTGTTGGAATAAAGGCTTTATTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR-3UTR CAA 90 bp AAATTAGAACAACACAGAAAGTTCTTTACACAGGTCCAGGTTCTGGCTGTGTTTGTGGGTGGGCTTGTCTaGAGGTCTTTGGAATGTTCG +
Preference number: 3 (lower is better)
Translates to: KLEQHRKFFTQVQVLAVFVGGLV*RSLECS
Trigger: CGAACATTCCAAAGACCTCAAGACAAGCCCACCCAC...AAACACAGCCAGAACCTGGACCTGTGTAAAGAACTTTCTGTGTTGTTCTAATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp CCGGCAGGCCCCCACCCGGCAGTTAATGCTCAAGGCTGGGGACACCTGCTGGGGTCGGCGTCACGCTCTTaGGCACGGGGAGTGTGTTGG +
Preference number: 4 (lower is better)
Translates to: PAGPHPAVNAQGWGHLLGSASRS*ARGVCW
Trigger: CCAACACACTCCCCGTGCGCAAGAGCGTGACGCCGA...CCCCAGCAGGTGTCCCCAGCCTTGAGCATTAACTGCCGGGTGGGGGCCTGCCGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR CAA 72 bp CACCACAGGGCTAGGGCAGCAGGTGCCAACGCTGCTTaGCCACTCAGCCGGCAGGCCCCCACCCGGCAGTTA +
Preference number: 4 (lower is better)
Translates to: HHRARAAGANAA*PLSRQAPTRQL
Trigger: TAACTGCCGGGTGGGGGCCTGCCGGCTGAGTGGCAAAGCAGCGTTGGCACCTGCTGCCCTAGCCCTGTGGTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp CCGGCAGGCCCCCACCCGGCAGTTAATGCTCAAGGCTGGGGACACCTGCTGGGGTCGCTCAGCTTGCTTTaGGACTGCGGGGGAGACAGG +
Preference number: 4 (lower is better)
Translates to: PAGPHPAVNAQGWGHLLGSLSLL*DCGGDR
Trigger: CCTGTCTCCCCCGCAGTCTCAAAGCAAGCTGAGCGA...CCCCAGCAGGTGTCCCCAGCCTTGAGCATTAACTGCCGGGTGGGGGCCTGCCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000075180.12
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp CCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGCGAGGCTAGGGCAGCTCAGGTGGCACTaGCAAGGGCTTGGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: PGTPGIQPRLGRCEARLGQLRWH*QGLGSR
Trigger: CCTGGAGCCAAGCCCTTGCCAGTGCCACCTGAGCTG...CCCTAGCCTCGCCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp CAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGGGTGCCGGCTGTCTGGGTaGGGAATGCCCGGGAGGACG +
Preference number: 4 (lower is better)
Translates to: QEAPKCPGPFSWCSPWKGCRLSG*GMPGRT
Trigger: CGTCCTCCCGGGCATTCCCCACCCAGACAGCCGGCA...CCCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp CCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGCGAGGCTAGGGGGAGGTTGCCTGTGCTaGTGCTCTTGCCCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: PGTPGIQPRLGRCEARLGGGCLC*CSCPAA
Trigger: TGCAGCAGGGCAAGAGCAGCAGCACAGGCAACCTCC...CCCTAGCCTCGCCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp GCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGCGAGTTCCTTAGAGCCCTaGCTCTCGCTGGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: ATSPGTPGIQPRLGRCEASSLEP*LSLASS
Trigger: GGAGCTGGCCAGCGAGAGCCAGGGCTCTAAGGAACT...CGCCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp GCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGCGCATCCGCCCCACAAATaGTGCCAGCTCAGGTGGCAC +
Preference number: 4 (lower is better)
Translates to: ATSPGTPGIQPRLGRCEAHPPHK*CQLRWH
Trigger: GTGCCACCTGAGCTGGCACCATTTGTGGGGCGGATG...CGCCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp CTGGGCCGATGTGAGGCGAGGCTAGGGAGTGGGGCATTGTGGTCTTCTCTGGACTGCCGGCTGTCTGGGTaGGGAATGCCCGGGAGGACG +
Preference number: 4 (lower is better)
Translates to: LGRCEARLGSGALWSSLDCRLSG*GMPGRT
Trigger: CGTCCTCCCGGGCATTCCCCACCCAGACAGCCGGCA...GTCCAGAGAAGACCACAATGCCCCACTCCCTAGCCTCGCCTCACATCGGCCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp GGCTGCAGCCTCCATCACAGGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCTGCCGGCTGTCTGGGTaGGGAATGCCCGGGAGGACG +
Preference number: 4 (lower is better)
Translates to: GCSLHHRSGQLPQEAPKCCRLSG*GMPGRT
Trigger: CGTCCTCCCGGGCATTCCCCACCCAGACAGCCGGCA...GCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCCTGTGATGGAGGCTGCAGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp CTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCTCGGCACAGGCTTGCTaGCACAGAGGCAGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: LLRQPPHQEHLGSSPGWASAQAC*HRGSFW
Trigger: CCAGAAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGA...GGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp ATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTCGGCGTCACGCTCTTaGGCACGGGGAGTGTGTTGG +
Preference number: 4 (lower is better)
Translates to: IGLLRQPPHQEHLGSSPGSASRS*ARGVCW
Trigger: CCAACACACTCCCCGTGCGCAAGAGCGTGACGCCGA...GCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp GAGCGCAGGGGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTGGGTTGCCTGTGCTGCTaGTCTTGCCCTGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: ERRGAESSTMDPGGFQSLGCLCC*SCPAAG
Trigger: GCCTGCAGCAGGGCAAGAGCAGCAGCACAGGCAACC...CAGACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCCCCTGCGCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp CCGGCAGGCCCCCACCCGGCAGTTAATGCTCAAGGCTGGGGACACCTGCTGGGGAGCGTCTCTTCCAACTaGTTCTGGATCTGCCGGTGC +
Preference number: 4 (lower is better)
Translates to: PAGPHPAVNAQGWGHLLGSVSSN*FWICRC
Trigger: GCACCGGCAGATCCAGAACCAGTTGGAAGAGACGCT...CCCCAGCAGGTGTCCCCAGCCTTGAGCATTAACTGCCGGGTGGGGGCCTGCCGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp ACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGCGAGGCACAGAGGCAGCTTCTaGGCCAGCAACTCCTTGCCC +
Preference number: 4 (lower is better)
Translates to: TSPGTPGIQPRLGRCEARHRGSF*ASNSLP
Trigger: GGGCAAGGAGTTGCTGGCCCAGAAGCTGCCTCTGTG...CCTCGCCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp AGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGGACAGGGATTTGGGCTaGGCAGCCTTTCGGTCAGCC +
Preference number: 4 (lower is better)
Translates to: RQPPHQEHLGSSPGWADVDRDLG*AAFRSA
Trigger: GGCTGACCGAAAGGCTGCCCAGCCCAAATCCCTGTC...CACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp CCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGCGAGGGGAGACAGGGATTTaGGCTGGGCAGCCTTTCGGT +
Preference number: 4 (lower is better)
Translates to: PPHQEHLGSSPGWADVRRGETGI*AGQPFG
Trigger: ACCGAAAGGCTGCCCAGCCCAAATCCCTGTCTCCCC...TCGCCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp GAGCGCAGGGGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTGAATGTGCCGGCTGTCTaGGTGGGGAATGCCCGGGAG +
Preference number: 4 (lower is better)
Translates to: ERRGAESSTMDPGGFQSLNVPAV*VGNARE
Trigger: CTCCCGGGCATTCCCCACCCAGACAGCCGGCACATT...CAGACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCCCCTGCGCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GCTGCTTTGCCACTCAGCCGGCAGGCCCCCACCCGGCAGTTAATGCTCAAGGCTAATGTGCCGGCTGTCTaGGTGGGGAATGCCCGGGAG +
Preference number: 4 (lower is better)
Translates to: AALPLSRQAPTRQLMLKANVPAV*VGNARE
Trigger: CTCCCGGGCATTCCCCACCCAGACAGCCGGCACATT...AGCCTTGAGCATTAACTGCCGGGTGGGGGCCTGCCGGCTGAGTGGCAAAGCAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp ATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCAATGTGCCGGCTGTCTaGGTGGGGAATGCCCGGGAG +
Preference number: 4 (lower is better)
Translates to: IGLLRQPPHQEHLGSSPGNVPAV*VGNARE
Trigger: CTCCCGGGCATTCCCCACCCAGACAGCCGGCACATT...GCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp GGGCATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCTTCTTCAGCTCAGCCTaGCACTTGTCCAGGGCGTCC +
Preference number: 4 (lower is better)
Translates to: GHRPLEAATSPGTPGIQPFFSSA*HLSRAS
Trigger: GGACGCCCTGGACAAGTGTCAGGCTGAGCTGAAGAA...GGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp ATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTCGCTCAGCTTGCTTTaGGACTGCGGGGGAGACAGG +
Preference number: 4 (lower is better)
Translates to: IGLLRQPPHQEHLGSSPGSLSLL*DCGGDR
Trigger: CCTGTCTCCCCCGCAGTCTCAAAGCAAGCTGAGCGA...GCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp ACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGCGAGGCTAGGAGGTTGCCTGTaGTGCTGCTCTTGCCCTGCT +
Preference number: 4 (lower is better)
Translates to: TSPGTPGIQPRLGRCEARLGGCL*CCSCPA
Trigger: AGCAGGGCAAGAGCAGCAGCACAGGCAACCTCCTAG...CCTCGCCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp GCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGCGCCTTGTCTAGGAGGTTaGCTGTGCTGCTGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: ATSPGTPGIQPRLGRCEAPCLGG*LCCCSC
Trigger: GCAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGG...CGCCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp TCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCCTCTTTGTCTGGGTGGGGAATaGCCGGGAGGACGTGCCGTA +
Preference number: 4 (lower is better)
Translates to: SEVPVAQVLAPLLGHRPLCLGGE*PGGRAV
Trigger: TACGGCACGTCCTCCCGGGCATTCCCCACCCAGACA...AAGAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp GAGCGCAGGGGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTGAGCCCTGGCTCTCGCTaGCCAGCTCCCCCATCTTTA +
Preference number: 4 (lower is better)
Translates to: ERRGAESSTMDPGGFQSLSPGSR*PAPPSL
Trigger: TAAAGATGGGGGAGCTGGCCAGCGAGAGCCAGGGCT...CAGACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCCCCTGCGCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp ATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCCACAGAGGCAGCTTCTaGGCCAGCAACTCCTTGCCC +
Preference number: 4 (lower is better)
Translates to: IGLLRQPPHQEHLGSSPGHRGSF*ASNSLP
Trigger: GGGCAAGGAGTTGCTGGCCCAGAAGCTGCCTCTGTG...GCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp CTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGCACTGGCAAGGGCTTaGCTCCAGGAATGGGATCTG +
Preference number: 4 (lower is better)
Translates to: LLRQPPHQEHLGSSPGWAALARA*LQEWDL
Trigger: CAGATCCCATTCCTGGAGCCAAGCCCTTGCCAGTGC...GGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp CGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAACGCTGCTTTGCCACTCAGCCAGCTCAGGTGGCACTaGCAAGGGCTTGGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: REHHRARAAGANAALPLSQLRWH*QGLGSR
Trigger: CCTGGAGCCAAGCCCTTGCCAGTGCCACCTGAGCTG...GCTGAGTGGCAAAGCAGCGTTGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp CTGCTCTTGCCTCCAGCTCCCACCAGGGCACTGCATGAGGTAACGCCACCCTGTTGGTGCCAGCTCAGGTaGCACTGGCAAGGGCTTGGC +
Preference number: 4 (lower is better)
Translates to: LLLPPAPTRALHEVTPPCWCQLR*HWQGLG
Trigger: GCCAAGCCCTTGCCAGTGCCACCTGAGCTGGCACCA...ACAGGGTGGCGTTACCTCATGCAGTGCCCTGGTGGGAGCTGGAGGCAAGAGCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GCTGCTTTGCCACTCAGCCGGCAGGCCCCCACCCGGCAGTTAATGCTCAAGGCTGGGGAGACAGGGATTTaGGCTGGGCAGCCTTTCGGT +
Preference number: 4 (lower is better)
Translates to: AALPLSRQAPTRQLMLKAGETGI*AGQPFG
Trigger: ACCGAAAGGCTGCCCAGCCCAAATCCCTGTCTCCCC...AGCCTTGAGCATTAACTGCCGGGTGGGGGCCTGCCGGCTGAGTGGCAAAGCAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075180.12
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGAGTGCCGGCTGTCTGGGTaGGGAATGCCCGGGAGGACG +
Preference number: 4 (lower is better)
Translates to: GNRLPSLQAGRMSSLCPECRLSG*GMPGRT
Trigger: CGTCCTCCCGGGCATTCCCCACCCAGACAGCCGGCA...CTCTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp CTGCTCTTGCCTCCAGCTCCCACCAGGGCACTGCATGAGGTAACGCCACCCTGTAATGTGCCGGCTGTCTaGGTGGGGAATGCCCGGGAG +
Preference number: 4 (lower is better)
Translates to: LLLPPAPTRALHEVTPPCNVPAV*VGNARE
Trigger: CTCCCGGGCATTCCCCACCCAGACAGCCGGCACATT...ACAGGGTGGCGTTACCTCATGCAGTGCCCTGGTGGGAGCTGGAGGCAAGAGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp AGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGTGTAGACATTTTCCGTaGGCCGGTGCATCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: RQPPHQEHLGSSPGWADVCRHFP*AGASPP
Trigger: CGGAGGAGATGCACCGGCTCACGGAAAATGTCTACA...CACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp GATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCCTCTTCTTCAGCTCAGCCTaGCACTTGTCCAGGGCGTCC +
Preference number: 4 (lower is better)
Translates to: DQRSLLPKCWPLCWGIGLFFSSA*HLSRAS
Trigger: GGACGCCCTGGACAAGTGTCAGGCTGAGCTGAAGAA...GAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp TGCTGGCCCCTCTGTTGGGGCATCGGCCTCTTGAGGCAGCCACCTCACCAGGAATCCTGCGCTCCTCAGTaGGTGCTGTCTTGTAGCCGT +
Preference number: 4 (lower is better)
Translates to: CWPLCWGIGLLRQPPHQESCAPQ*VLSCSR
Trigger: ACGGCTACAAGACAGCACTCACTGAGGAGCGCAGGA...TTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCCCAACAGAGGGGCCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp CCGGCAGGCCCCCACCCGGCAGTTAATGCTCAAGGCTGGGGACACCTGCTGGGGGAATGGGATCTGAGATaGCCAGGTTGGACTTGGAAG +
Preference number: 4 (lower is better)
Translates to: PAGPHPAVNAQGWGHLLGEWDLR*PGWTWK
Trigger: CTTCCAAGTCCAACCTGGTCATCTCAGATCCCATTC...CCCCAGCAGGTGTCCCCAGCCTTGAGCATTAACTGCCGGGTGGGGGCCTGCCGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GCCAGCTGTAGGGCTGAGCCCACTGGGCCTTGGGCTCCGCTGCCCAGAATTCAGTTTTCCGTGAGCCGGTaGATCTCCTCCGAGCGTGAA +
Preference number: 4 (lower is better)
Translates to: ASCRAEPTGPWAPLPRIQFSVSR*ISSERE
Trigger: TTCACGCTCGGAGGAGATGCACCGGCTCACGGAAAA...CTGAATTCTGGGCAGCGGAGCCCAAGGCCCAGTGGGCTCAGCCCTACAGCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GCCAGCTGTAGGGCTGAGCCCACTGGGCCTTGGGCTCCGCTGCCCAGAATTCAGTTCTGGATCTGCCGGTaGACCTCAGCCATCTGGAAG +
Preference number: 4 (lower is better)
Translates to: ASCRAEPTGPWAPLPRIQFWICR*TSAIWK
Trigger: CTTCCAGATGGCTGAGGTGCACCGGCAGATCCAGAA...CTGAATTCTGGGCAGCGGAGCCCAAGGCCCAGTGGGCTCAGCCCTACAGCTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp CAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGGGGCCAGCAACTCCTTaGCCTTGGAATGGTAAGCAG +
Preference number: 4 (lower is better)
Translates to: QPPHQEHLGSSPGWADVRGPATP*PWNGKQ
Trigger: CTGCTTACCATTCCAAGGGCAAGGAGTTGCTGGCCC...CCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp GATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCCTCACGAGTCGCTCAGCTTaGTTTGAGACTGCGGGGGAG +
Preference number: 4 (lower is better)
Translates to: DQRSLLPKCWPLCWGIGLTSRSA*FETAGE
Trigger: CTCCCCCGCAGTCTCAAAGCAAGCTGAGCGACTCGT...GAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp AAAGGGATGTGCGTCGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAACGCTGGGTTGCCTGTGCTGCTaGTCTTGCCCTGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: KGMCVVNTTGLGQQVPTLGCLCC*SCPAAG
Trigger: GCCTGCAGCAGGGCAAGAGCAGCAGCACAGGCAACC...CAGCGTTGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACGACGCACATCCCTTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp TCCATCACAGGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTGGAGGTTGCCTGTGCTaGTGCTCTTGCCCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: SITGVVSFLRRLPSAQAPGGCLC*CSCPAA
Trigger: TGCAGCAGGGCAAGAGCAGCAGCACAGGCAACCTCC...AGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCCTGTGATGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GCTGCTTTGCCACTCAGCCGGCAGGCCCCCACCCGGCAGTTAATGCTCAAGGCTCTAGGAGGTTGCCTGTaGTGCTGCTCTTGCCCTGCT +
Preference number: 4 (lower is better)
Translates to: AALPLSRQAPTRQLMLKALGGCL*CCSCPA
Trigger: AGCAGGGCAAGAGCAGCAGCACAGGCAACCTCCTAG...AGCCTTGAGCATTAACTGCCGGGTGGGGGCCTGCCGGCTGAGTGGCAAAGCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp CAGGTGGGGACAGAGTGTCGATGCAGAGGAGCCCGTCAGCTGAGCAGAGGGGCTCTAGGAGGTTGCCTGTaGTGCTGCTCTTGCCCTGCT +
Preference number: 4 (lower is better)
Translates to: QVGTECRCRGARQLSRGALGGCL*CCSCPA
Trigger: AGCAGGGCAAGAGCAGCAGCACAGGCAACCTCCTAG...AGCCCCTCTGCTCAGCTGACGGGCTCCTCTGCATCGACACTCTGTCCCCACCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp GCCAGCTGTAGGGCTGAGCCCACTGGGCCTTGGGCTCCGCTGCCCAGAATTCAGCCTTGTCTAGGAGGTTaGCTGTGCTGCTGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: ASCRAEPTGPWAPLPRIQPCLGG*LCCCSC
Trigger: GCAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGG...CTGAATTCTGGGCAGCGGAGCCCAAGGCCCAGTGGGCTCAGCCCTACAGCTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp CAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGGGAGACCCCACAAATGGTaGCAGCTCAGGTGGCACTGG +
Preference number: 4 (lower is better)
Translates to: QEAPKCPGPFSWCSPWKGRPHKW*QLRWHW
Trigger: CCAGTGCCACCTGAGCTGGCACCATTTGTGGGGTCT...CCCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000103021.10
CDS-3UTR CCA 90 bp TCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGGCACAGAGGCAGCTTCTaGGCCAGCAACTCCTTGCCC +
Preference number: 4 (lower is better)
Translates to: SGGSQVPRPLFLVQPLEGHRGSF*ASNSLP
Trigger: GGGCAAGGAGTTGCTGGCCCAGAAGCTGCCTCTGTG...CCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp CTGCTCTTGCCTCCAGCTCCCACCAGGGCACTGCATGAGGTAACGCCACCCTGTCACAGAGGCAGCTTCTaGGCCAGCAACTCCTTGCCC +
Preference number: 4 (lower is better)
Translates to: LLLPPAPTRALHEVTPPCHRGSF*ASNSLP
Trigger: GGGCAAGGAGTTGCTGGCCCAGAAGCTGCCTCTGTG...ACAGGGTGGCGTTACCTCATGCAGTGCCCTGGTGGGAGCTGGAGGCAAGAGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp ATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCGCACTGGCAAGGGCTTaGCTCCAGGAATGGGATCTG +
Preference number: 4 (lower is better)
Translates to: IGLLRQPPHQEHLGSSPGALARA*LQEWDL
Trigger: CAGATCCCATTCCTGGAGCCAAGCCCTTGCCAGTGC...GCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp TTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGTGGTGCCAGCTCAGGTaGCACTGGCAAGGGCTTGGC +
Preference number: 4 (lower is better)
Translates to: LGSEVPVAQVLAPLLGHRWCQLR*HWQGLG
Trigger: GCCAAGCCCTTGCCAGTGCCACCTGAGCTGGCACCA...CCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp AGGCTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGTGGTGCCAGCTCAGGTaGCACTGGCAAGGGCTTGGC +
Preference number: 4 (lower is better)
Translates to: RLAGFANHIRGASAASQGWCQLR*HWQGLG
Trigger: GCCAAGCCCTTGCCAGTGCCACCTGAGCTGGCACCA...CCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGGCATCCGCCCCACAAATaGTGCCAGCTCAGGTGGCAC +
Preference number: 4 (lower is better)
Translates to: SGGSQVPRPLFLVQPLEGHPPHK*CQLRWH
Trigger: GTGCCACCTGAGCTGGCACCATTTGTGGGGCGGATG...CCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075180.12
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GCCAGCTGTAGGGCTGAGCCCACTGGGCCTTGGGCTCCGCTGCCCAGAATTCAGACCAGCCCCGCATCTTaGTCTTCTCACTCTCCCCAT +
Preference number: 4 (lower is better)
Translates to: ASCRAEPTGPWAPLPRIQTSPAS*SSHSPH
Trigger: ATGGGGAGAGTGAGAAGACCAAGATGCGGGGCTGGT...CTGAATTCTGGGCAGCGGAGCCCAAGGCCCAGTGGGCTCAGCCCTACAGCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TGGACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGAATGTGCCGGCTGTCTaGGTGGGGAATGCCCGGGAG +
Preference number: 4 (lower is better)
Translates to: WTGTCPDHPQLAGGDRVSNVPAV*VGNARE
Trigger: CTCCCGGGCATTCCCCACCCAGACAGCCGGCACATT...CGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp TCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAATCTTGCCCATGGCGATaGAGTTGCGGAGGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: SSGGSQVPRPLFLVQPLESCPWR*SCGGWG
Trigger: ACCCCAGCCTCCGCAACTTCATCGCCATGGGCAAGA...TTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp GGCTGCAGCCTCCATCACAGGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCTTCTTCAGCTCAGCCTaGCACTTGTCCAGGGCGTCC +
Preference number: 4 (lower is better)
Translates to: GCSLHHRSGQLPQEAPKCFFSSA*HLSRAS
Trigger: GGACGCCCTGGACAAGTGTCAGGCTGAGCTGAAGAA...GCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCCTGTGATGGAGGCTGCAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp CTGCTCTTGCCTCCAGCTCCCACCAGGGCACTGCATGAGGTAACGCCACCCTGTTTCTTCAGCTCAGCCTaGCACTTGTCCAGGGCGTCC +
Preference number: 4 (lower is better)
Translates to: LLLPPAPTRALHEVTPPCFFSSA*HLSRAS
Trigger: GGACGCCCTGGACAAGTGTCAGGCTGAGCTGAAGAA...ACAGGGTGGCGTTACCTCATGCAGTGCCCTGGTGGGAGCTGGAGGCAAGAGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp TCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGGTCCTGCGCTCCTCAGTaGGTGCTGTCTTGTAGCCGT +
Preference number: 4 (lower is better)
Translates to: SGGSQVPRPLFLVQPLEGSCAPQ*VLSCSR
Trigger: ACGGCTACAAGACAGCACTCACTGAGGAGCGCAGGA...CCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp CTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCAGCTGCCATGGAGCTTaGACGTGGCAGTGTCTTGTT +
Preference number: 4 (lower is better)
Translates to: LLRQPPHQEHLGSSPGWASCHGA*TWQCLV
Trigger: AACAAGACACTGCCACGTTCAAGCTCCATGGCAGCT...GGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp GCTGCTTTGCCACTCAGCCGGCAGGCCCCCACCCGGCAGTTAATGCTCAAGGCTTTCTGGATCTGCCGGTaGACCTCAGCCATCTGGAAG +
Preference number: 4 (lower is better)
Translates to: AALPLSRQAPTRQLMLKAFWICR*TSAIWK
Trigger: CTTCCAGATGGCTGAGGTGCACCGGCAGATCCAGAA...AGCCTTGAGCATTAACTGCCGGGTGGGGGCCTGCCGGCTGAGTGGCAAAGCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GGGCATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCTCCAGTTCTACTTTCTaGTCCAGCTGCGTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: GHRPLEAATSPGTPGIQPSSSTF*SSCVSS
Trigger: GCTGCTCACGCAGCTGGAGCAGAAAGTAGAACTGGA...GGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp CTCAGCTGGCAGGTGGGGACAGAGTGTCGATGCAGAGGAGCCCGTCAGCTGAGCTTGGCCACAGCGCACTaGTTTTCCACCAGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: LSWQVGTECRCRGARQLSLATAH*FSTRKQ
Trigger: CTGCTTCCTGGTGGAAAAGCAGTGCGCTGTGGCCAA...GCTCAGCTGACGGGCTCCTCTGCATCGACACTCTGTCCCCACCTGCCAGCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp TCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAATCGGCACAGGCTTGCTaGCACAGAGGCAGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: SSGGSQVPRPLFLVQPLESAQAC*HRGSFW
Trigger: CCAGAAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGA...TTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GGCCGATGTGAGGCGAGGCTAGGGAGTGGGGCATTGTGGTCTTCTCTGGACAGGACGAGTCGCTCAGCTTaGTTTGAGACTGCGGGGGAG +
Preference number: 4 (lower is better)
Translates to: GRCEARLGSGALWSSLDRTSRSA*FETAGE
Trigger: CTCCCCCGCAGTCTCAAAGCAAGCTGAGCGACTCGT...CCTGTCCAGAGAAGACCACAATGCCCCACTCCCTAGCCTCGCCTCACATCGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp TTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGGGAGGTTGCCTGTGCTaGTGCTCTTGCCCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: LGSEVPVAQVLAPLLGHRGGCLC*CSCPAA
Trigger: TGCAGCAGGGCAAGAGCAGCAGCACAGGCAACCTCC...CCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp GCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTCTGAGCCCTGGCTCTCGCTaGCCAGCTCCCCCATCTTTA +
Preference number: 4 (lower is better)
Translates to: AGFANHIRGASAASQGLLSPGSR*PAPPSL
Trigger: TAAAGATGGGGGAGCTGGCCAGCGAGAGCCAGGGCT...CAGAAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAAGTTCCTTAGAGCCCTaGCTCTCGCTGGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: SSGGSQVPRPLFLVQPLESSLEP*LSLASS
Trigger: GGAGCTGGCCAGCGAGAGCCAGGGCTCTAAGGAACT...TTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGGGCACTGGCAAGGGCTTaGCTCCAGGAATGGGATCTG +
Preference number: 4 (lower is better)
Translates to: SGGSQVPRPLFLVQPLEGALARA*LQEWDL
Trigger: CAGATCCCATTCCTGGAGCCAAGCCCTTGCCAGTGC...CCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GGGATGTGCGTCGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAACGCTGCTTGCACTGGCAAGGGCTTaGCTCCAGGAATGGGATCTG +
Preference number: 4 (lower is better)
Translates to: GMCVVNTTGLGQQVPTLLALARA*LQEWDL
Trigger: CAGATCCCATTCCTGGAGCCAAGCCCTTGCCAGTGC...AAGCAGCGTTGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACGACGCACATCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp CTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTCAGCTCAGGTGGCACTaGCAAGGGCTTGGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: LAGFANHIRGASAASQGLQLRWH*QGLGSR
Trigger: CCTGGAGCCAAGCCCTTGCCAGTGCCACCTGAGCTG...AAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TTCTCTGGACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTGGTGCCAGCTCAGGTaGCACTGGCAAGGGCTTGGC +
Preference number: 4 (lower is better)
Translates to: FSGQEHALITLSWQVGTEWCQLR*HWQGLG
Trigger: GCCAAGCCCTTGCCAGTGCCACCTGAGCTGGCACCA...CTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCAGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp TCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGACAGGGATTTGGGCTaGGCAGCCTTTCGGTCAGCC +
Preference number: 4 (lower is better)
Translates to: SSGGSQVPRPLFLVQPLEDRDLG*AAFRSA
Trigger: GGCTGACCGAAAGGCTGCCCAGCCCAAATCCCTGTC...TTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075180.12
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGGACAGGGATTTGGGCTaGGCAGCCTTTCGGTCAGCC +
Preference number: 4 (lower is better)
Translates to: LGSEVPVAQVLAPLLGHRDRDLG*AAFRSA
Trigger: GGCTGACCGAAAGGCTGCCCAGCCCAAATCCCTGTC...CCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp GCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTCTGGGGGAGACAGGGATTTaGGCTGGGCAGCCTTTCGGT +
Preference number: 4 (lower is better)
Translates to: AGFANHIRGASAASQGLLGETGI*AGQPFG
Trigger: ACCGAAAGGCTGCCCAGCCCAAATCCCTGTCTCCCC...CAGAAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075180.12
ENSMUST00000106231.8
3UTR CAA 72 bp TTGGAATGTTCGCATGTGGCCGGGCAGCACCTGCTCTaGCCTCCAGCTCCCACCAGGGCACTGCATGAGGTA +
Preference number: 4 (lower is better)
Translates to: LECSHVAGQHLL*PPAPTRALHEV
Trigger: TACCTCATGCAGTGCCCTGGTGGGAGCTGGAGGCAAGAGCAGGTGCTGCCCGGCCACATGCGAACATTCCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp TCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGGTGTAGACATTTTCCGTaGGCCGGTGCATCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: SGGSQVPRPLFLVQPLEGCRHFP*AGASPP
Trigger: CGGAGGAGATGCACCGGCTCACGGAAAATGTCTACA...CCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp TTCTCTGGACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTCTTGCCCATGGCGATaGAGTTGCGGAGGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: FSGQEHALITLSWQVGTESCPWR*SCGGWG
Trigger: ACCCCAGCCTCCGCAACTTCATCGCCATGGGCAAGA...CTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCAGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp TCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCCTCTTCTTTGGCAGCGAAGGTaGCACCTGCCAGTGCTTTCT +
Preference number: 4 (lower is better)
Translates to: SEVPVAQVLAPLLGHRPLLWQRR*HLPVLS
Trigger: AGAAAGCACTGGCAGGTGTCACCTTCGCTGCCAAAG...AAGAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp TCCATCACAGGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTCTTTGGCAGCGAAGGTaGCACCTGCCAGTGCTTTCT +
Preference number: 4 (lower is better)
Translates to: SITGVVSFLRRLPSAQAPLWQRR*HLPVLS
Trigger: AGAAAGCACTGGCAGGTGTCACCTTCGCTGCCAAAG...AGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCCTGTGATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp GGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGCGAGGCTAGGGAGTCTGCAGCTCCTTGTCTaGGTACTTCTGAGGGTTCTT +
Preference number: 4 (lower is better)
Translates to: GTPGIQPRLGRCEARLGSLQLLV*VLLRVL
Trigger: AAGAACCCTCAGAAGTACTCAGACAAGGAGCTGCAG...ACTCCCTAGCCTCGCCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp TGCTGGCCCCTCTGTTGGGGCATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACGCCCTGCTTATTGCTaGTGGCATCGATGTACTGCA +
Preference number: 4 (lower is better)
Translates to: CWPLCWGIGLLRQPPHQERPAYC*WHRCTA
Trigger: TGCAGTACATCGATGCCATCAGCAATAAGCAGGGCG...TTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCCCAACAGAGGGGCCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp AGGCTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGTCCTGCGCTCCTCAGTaGGTGCTGTCTTGTAGCCGT +
Preference number: 4 (lower is better)
Translates to: RLAGFANHIRGASAASQGSCAPQ*VLSCSR
Trigger: ACGGCTACAAGACAGCACTCACTGAGGAGCGCAGGA...CCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp GGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTGGGATCACCATCCTGCGCTCCTCAGTaGGTGCTGTCTTGTAGCCGT +
Preference number: 4 (lower is better)
Translates to: GAESSTMDPGGFQSLGSPSCAPQ*VLSCSR
Trigger: ACGGCTACAAGACAGCACTCACTGAGGAGCGCAGGA...TGGTGATCCCAGACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp GGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGCGAGGCTAGGGAGTTCCAGGAATGGGATCTaGGATGACCAGGTTGGACTT +
Preference number: 4 (lower is better)
Translates to: GTPGIQPRLGRCEARLGSSRNGI*DDQVGL
Trigger: AAGTCCAACCTGGTCATCTCAGATCCCATTCCTGGA...ACTCCCTAGCCTCGCCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp TTCTCTGGACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTCGCTCAGCTTGCTTTaGGACTGCGGGGGAGACAGG +
Preference number: 4 (lower is better)
Translates to: FSGQEHALITLSWQVGTESLSLL*DCGGDR
Trigger: CCTGTCTCCCCCGCAGTCTCAAAGCAAGCTGAGCGA...CTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCAGAGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp CTGGGCCGATGTGAGGCGAGGCTAGGGAGTGGGGCATTGTGGTCTTCTCTGGACGCTGAGCAGAGGGGCTaGTCTGTCATTGGTCACTGT +
Preference number: 4 (lower is better)
Translates to: LGRCEARLGSGALWSSLDAEQRG*SVIGHC
Trigger: ACAGTGACCAATGACAGATCAGCCCCTCTGCTCAGC...GTCCAGAGAAGACCACAATGCCCCACTCCCTAGCCTCGCCTCACATCGGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026436.10
CDS-3UTR GCA 90 bp GGCTGCAGCCTCCATCACAGGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCTTTTCCGTGAGCCGGTaGATCTCCTCCGAGCGTGAA +
Preference number: 4 (lower is better)
Translates to: GCSLHHRSGQLPQEAPKCFSVSR*ISSERE
Trigger: TTCACGCTCGGAGGAGATGCACCGGCTCACGGAAAA...GCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCCTGTGATGGAGGCTGCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGATGCAGAGGAGCCCGTCATTTTCCGTGAGCCGGTaGATCTCCTCCGAGCGTGAA +
Preference number: 4 (lower is better)
Translates to: DHPQLAGGDRVSMQRSPSFSVSR*ISSERE
Trigger: TTCACGCTCGGAGGAGATGCACCGGCTCACGGAAAA...TGACGGGCTCCTCTGCATCGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp CTGGGCCGATGTGAGGCGAGGCTAGGGAGTGGGGCATTGTGGTCTTCTCTGGACTTCTGGATCTGCCGGTaGACCTCAGCCATCTGGAAG +
Preference number: 4 (lower is better)
Translates to: LGRCEARLGSGALWSSLDFWICR*TSAIWK
Trigger: CTTCCAGATGGCTGAGGTGCACCGGCAGATCCAGAA...GTCCAGAGAAGACCACAATGCCCCACTCCCTAGCCTCGCCTCACATCGGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp GGCCGATGTGAGGCGAGGCTAGGGAGTGGGGCATTGTGGTCTTCTCTGGACAGGGCGCTCCTCAGTGAGTaGTGTCTTGTAGCCGTCAGA +
Preference number: 4 (lower is better)
Translates to: GRCEARLGSGALWSSLDRALLSE*CLVAVR
Trigger: TCTGACGGCTACAAGACAGCACTCACTGAGGAGCGC...CCTGTCCAGAGAAGACCACAATGCCCCACTCCCTAGCCTCGCCTCACATCGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp GGCTGCAGCCTCCATCACAGGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCGGGCCAGCAACTCCTTaGCCTTGGAATGGTAAGCAG +
Preference number: 4 (lower is better)
Translates to: GCSLHHRSGQLPQEAPKCGPATP*PWNGKQ
Trigger: CTGCTTACCATTCCAAGGGCAAGGAGTTGCTGGCCC...GCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCCTGTGATGGAGGCTGCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp TCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCCTCTTGGGCCAGCAACTCCTTaGCCTTGGAATGGTAAGCAG +
Preference number: 4 (lower is better)
Translates to: SEVPVAQVLAPLLGHRPLGPATP*PWNGKQ
Trigger: CTGCTTACCATTCCAAGGGCAAGGAGTTGCTGGCCC...AAGAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp ATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGGGGTCGGCACAGGCTTaGTGCCACAGAGGCAGCTTC +
Preference number: 4 (lower is better)
Translates to: MGIGSLPCKPAECPLCVQGSAQA*CHRGSF
Trigger: GAAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCC...CTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp CATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGGGTCGGCACAGGCTTaGTGCCACAGAGGCAGCTTC +
Preference number: 4 (lower is better)
Translates to: HGNRLPSLQAGRMSSLCPGSAQA*CHRGSF
Trigger: GAAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCC...TGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp AAAGGGATGTGCGTCGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAACGCTGACGAGTCGCTCAGCTTaGTTTGAGACTGCGGGGGAG +
Preference number: 4 (lower is better)
Translates to: KGMCVVNTTGLGQQVPTLTSRSA*FETAGE
Trigger: CTCCCCCGCAGTCTCAAAGCAAGCTGAGCGACTCGT...CAGCGTTGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACGACGCACATCCCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075180.12
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp ATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGTCGGCGTCACGCTCTTaGGCACGGGGAGTGTGTTGG +
Preference number: 4 (lower is better)
Translates to: MGIGSLPCKPAECPLCVQSASRS*ARGVCW
Trigger: CCAACACACTCCCCGTGCGCAAGAGCGTGACGCCGA...CTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp AGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCGGTTGCCTGTGCTGCTaGTCTTGCCCTGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: SMGIGSLPCKPAECPLCVGCLCC*SCPAAG
Trigger: GCCTGCAGCAGGGCAAGAGCAGCAGCACAGGCAACC...GACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp CATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGGTTGCCTGTGCTGCTaGTCTTGCCCTGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: HGNRLPSLQAGRMSSLCPGCLCC*SCPAAG
Trigger: GCCTGCAGCAGGGCAAGAGCAGCAGCACAGGCAACC...TGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp GGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTGGGATCACCACTAGGAGGTTGCCTGTaGTGCTGCTCTTGCCCTGCT +
Preference number: 4 (lower is better)
Translates to: GAESSTMDPGGFQSLGSPLGGCL*CCSCPA
Trigger: AGCAGGGCAAGAGCAGCAGCACAGGCAACCTCCTAG...TGGTGATCCCAGACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTCTGCTAGGAGGTTGCCTGTaGTGCTGCTCTTGCCCTGCT +
Preference number: 4 (lower is better)
Translates to: AGFANHIRGASAASQGLLLGGCL*CCSCPA
Trigger: AGCAGGGCAAGAGCAGCAGCACAGGCAACCTCCTAG...CAGAAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp ATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGTGTCTGGGTGGGGAATaGCCGGGAGGACGTGCCGTA +
Preference number: 4 (lower is better)
Translates to: MGIGSLPCKPAECPLCVQCLGGE*PGGRAV
Trigger: TACGGCACGTCCTCCCGGGCATTCCCCACCCAGACA...CTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp CTTCTCTGGACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAAGTTCCTTAGAGCCCTaGCTCTCGCTGGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LLWTGTCPDHPQLAGGDRSSLEP*LSLASS
Trigger: GGAGCTGGCCAGCGAGAGCCAGGGCTCTAAGGAACT...TCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCAGAGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp CTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTCACAGAGGCAGCTTCTaGGCCAGCAACTCCTTGCCC +
Preference number: 4 (lower is better)
Translates to: LAGFANHIRGASAASQGLHRGSF*ASNSLP
Trigger: GGGCAAGGAGTTGCTGGCCCAGAAGCTGCCTCTGTG...AAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TGGACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGGGTCTGGGATCTTGTTaGGGTCGGCACAGGCTTGCT +
Preference number: 4 (lower is better)
Translates to: WTGTCPDHPQLAGGDRVSGLGSC*GRHRLA
Trigger: AGCAAGCCTGTGCCGACCCCAACAAGATCCCAGACC...CGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp TCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGTCTGGGATCTTGTTaGGGTCGGCACAGGCTTGCT +
Preference number: 4 (lower is better)
Translates to: SSGGSQVPRPLFLVQPLEGLGSC*GRHRLA
Trigger: AGCAAGCCTGTGCCGACCCCAACAAGATCCCAGACC...TTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCCTCGGGCACTTGGAAGGATaGAGCCATTGCTATTGGCCA +
Preference number: 4 (lower is better)
Translates to: DQRSLLPKCWPLCWGIGLGHLEG*SHCYWP
Trigger: TGGCCAATAGCAATGGCTCCATCCTTCCAAGTGCCC...GAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp GCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTCTGGCACTGGCAAGGGCTTaGCTCCAGGAATGGGATCTG +
Preference number: 4 (lower is better)
Translates to: AGFANHIRGASAASQGLLALARA*LQEWDL
Trigger: CAGATCCCATTCCTGGAGCCAAGCCCTTGCCAGTGC...CAGAAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGATGCAGACATCCGCCCCACAAATaGTGCCAGCTCAGGTGGCAC +
Preference number: 4 (lower is better)
Translates to: EHALITLSWQVGTECRCRHPPHK*CQLRWH
Trigger: GTGCCACCTGAGCTGGCACCATTTGTGGGGCGGATG...TCTGCATCGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp CAGTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATGGGGAGACAGGGATTTaGGCTGGGCAGCCTTTCGGT +
Preference number: 4 (lower is better)
Translates to: QLGSEVPVAQVLAPLLGHGETGI*AGQPFG
Trigger: ACCGAAAGGCTGCCCAGCCCAAATCCCTGTCTCCCC...ATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp ACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGCGAGGTCTTGTTCTCAGTGGTaGCATAGCTGTTCTTCGGCG +
Preference number: 4 (lower is better)
Translates to: TSPGTPGIQPRLGRCEARSCSQW*HSCSSA
Trigger: CGCCGAAGAACAGCTATGCCACCACTGAGAACAAGA...CCTCGCCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp TTGGGGCATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGACCAGCCCCGCATCTTaGTCTTCTCACTCTCCCCAT +
Preference number: 4 (lower is better)
Translates to: LGHRPLEAATSPGTPGIQTSPAS*SSHSPH
Trigger: ATGGGGAGAGTGAGAAGACCAAGATGCGGGGCTGGT...CTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp CAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGGTGAGCAGCTCATTGTaGAAAGACTTCAGCGTCTCT +
Preference number: 4 (lower is better)
Translates to: QPPHQEHLGSSPGWADVRVSSSL*KDFSVS
Trigger: AGAGACGCTGAAGTCTTTTCACAATGAGCTGCTCAC...CCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp CTGCTCTTGCCTCCAGCTCCCACCAGGGCACTGCATGAGGTAACGCCACCCTGTTCTGCTCCAGCTGCGTaGGCAGCTCATTGTGAAAAG +
Preference number: 4 (lower is better)
Translates to: LLLPPAPTRALHEVTPPCSAPAA*AAHCEK
Trigger: CTTTTCACAATGAGCTGCTCACGCAGCTGGAGCAGA...ACAGGGTGGCGTTACCTCATGCAGTGCCCTGGTGGGAGCTGGAGGCAAGAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp CTGCTCTTGCCTCCAGCTCCCACCAGGGCACTGCATGAGGTAACGCCACCCTGTCGCCCTGCTTATTGCTaGTGGCATCGATGTACTGCA +
Preference number: 4 (lower is better)
Translates to: LLLPPAPTRALHEVTPPCRPAYC*WHRCTA
Trigger: TGCAGTACATCGATGCCATCAGCAATAAGCAGGGCG...ACAGGGTGGCGTTACCTCATGCAGTGCCCTGGTGGGAGCTGGAGGCAAGAGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp TCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAATTCTGGATCTGCCGGTaGACCTCAGCCATCTGGAAG +
Preference number: 4 (lower is better)
Translates to: SSGGSQVPRPLFLVQPLEFWICR*TSAIWK
Trigger: CTTCCAGATGGCTGAGGTGCACCGGCAGATCCAGAA...TTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp CCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGCGAATGGCATCGATGTACTaGAGCTCCTTGTCTGAGTAC +
Preference number: 4 (lower is better)
Translates to: PPHQEHLGSSPGWADVRRMASMY*SSLSEY
Trigger: GTACTCAGACAAGGAGCTGCAGTACATCGATGCCAT...TCGCCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp TCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCCTCTTTTCTCCAGCTCGCCCTaGTTATTGCTGATGGCATCG +
Preference number: 4 (lower is better)
Translates to: SEVPVAQVLAPLLGHRPLFSSSP*LLLMAS
Trigger: CGATGCCATCAGCAATAAGCAGGGCGAGCTGGAGAA...AAGAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp ATGAGCGCAGGGGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTTCTCCAGCTCGCCCTaGTTATTGCTGATGGCATCG +
Preference number: 4 (lower is better)
Translates to: MSAGAQRAAPWTLGDFRVFSSSP*LLLMAS
Trigger: CGATGCCATCAGCAATAAGCAGGGCGAGCTGGAGAA...GACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCCCCTGCGCTCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp CTGGGCCGATGTGAGGCGAGGCTAGGGAGTGGGGCATTGTGGTCTTCTCTGGACTTCTCCAGCTCGCCCTaGTTATTGCTGATGGCATCG +
Preference number: 4 (lower is better)
Translates to: LGRCEARLGSGALWSSLDFSSSP*LLLMAS
Trigger: CGATGCCATCAGCAATAAGCAGGGCGAGCTGGAGAA...GTCCAGAGAAGACCACAATGCCCCACTCCCTAGCCTCGCCTCACATCGGCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp TCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGCGCTCCTCAGTGAGTaGTGTCTTGTAGCCGTCAGA +
Preference number: 4 (lower is better)
Translates to: SSGGSQVPRPLFLVQPLEALLSE*CLVAVR
Trigger: TCTGACGGCTACAAGACAGCACTCACTGAGGAGCGC...TTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GGACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGATTGGCCACAGCGCACTaGTTTTCCACCAGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: GQEHALITLSWQVGTECRLATAH*FSTRKQ
Trigger: CTGCTTCCTGGTGGAAAAGCAGTGCGCTGTGGCCAA...TCGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp AGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCTCGGCACAGGCTTGCTaGCACAGAGGCAGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: SMGIGSLPCKPAECPLCVSAQAC*HRGSFW
Trigger: CCAGAAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGA...GACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp TTGGGGCATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCTATTGGCCATCTGTTaGATCAGCTGGACAGCACGG +
Preference number: 4 (lower is better)
Translates to: LGHRPLEAATSPGTPGIQLLAIC*ISWTAR
Trigger: CCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAG...CTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp TCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGGCTATTGGCCATCTGTTaGATCAGCTGGACAGCACGG +
Preference number: 4 (lower is better)
Translates to: SGGSQVPRPLFLVQPLEGLLAIC*ISWTAR
Trigger: CCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAG...CCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GAGCAGGCCAAGACACCAAGACCCAGCAGGATGGAGGAGGGGCTCACTGTACTAACGAGTCGCTCAGCTTaGTTTGAGACTGCGGGGGAG +
Preference number: 4 (lower is better)
Translates to: EQAKTPRPSRMEEGLTVLTSRSA*FETAGE
Trigger: CTCCCCCGCAGTCTCAAAGCAAGCTGAGCGACTCGT...TAGTACAGTGAGCCCCTCCTCCATCCTGCTGGGTCTTGGTGTCTTGGCCTGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGCTTCTCCCTCGGCGTCACGCTCTTaGGCACGGGGAGTGTGTTGG +
Preference number: 4 (lower is better)
Translates to: DTHKRRNLGGAGPEPASPSASRS*ARGVCW
Trigger: CCAACACACTCCCCGTGCGCAAGAGCGTGACGCCGA...GGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGCTTCTCCCGGTTGCCTGTGCTGCTaGTCTTGCCCTGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: DTHKRRNLGGAGPEPASPGCLCC*SCPAAG
Trigger: GCCTGCAGCAGGGCAAGAGCAGCAGCACAGGCAACC...GGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTCCTTGTCTAGGAGGTTaGCTGTGCTGCTGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: GVVSFLRRLPSAQAPFLGPCLGG*LCCCSC
Trigger: GCAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGG...ACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTGGGATCACCACCTTGTCTAGGAGGTTaGCTGTGCTGCTGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: GAESSTMDPGGFQSLGSPPCLGG*LCCCSC
Trigger: GCAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGG...TGGTGATCCCAGACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp CTTAGAAAAGGGATGTGCGTCGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAAGTTCCTTAGAGCCCTaGCTCTCGCTGGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LRKGMCVVNTTGLGQQVPSSLEP*LSLASS
Trigger: GGAGCTGGCCAGCGAGAGCCAGGGCTCTAAGGAACT...TGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACGACGCACATCCCTTTTCTAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GAGCGCAGGGGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTGAAGCAGCAGAGTTCTTaGCCACAGCGCACTGCTTTT +
Preference number: 4 (lower is better)
Translates to: ERRGAESSTMDPGGFQSLKQQSS*PQRTAF
Trigger: AAAAGCAGTGCGCTGTGGCCAAGAACTCTGCTGCTT...CAGACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCCCCTGCGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGAGGGTCTGGGATCTTGTTaGGGTCGGCACAGGCTTGCT +
Preference number: 4 (lower is better)
Translates to: GNRLPSLQAGRMSSLCPEGLGSC*GRHRLA
Trigger: AGCAAGCCTGTGCCGACCCCAACAAGATCCCAGACC...CTCTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp CAGGACCCTAAGTCCTGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGACAGCTCAGGTGGCACTaGCAAGGGCTTGGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: QDPKSCPVLEDARTLGVRQLRWH*QGLGSR
Trigger: CCTGGAGCCAAGCCCTTGCCAGTGCCACCTGAGCTG...TCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACAGGACTTAGGGTCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GAGCGCAGGGGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTGTCTTGTTCTCAGTGGTaGCATAGCTGTTCTTCGGCG +
Preference number: 4 (lower is better)
Translates to: ERRGAESSTMDPGGFQSLSCSQW*HSCSSA
Trigger: CGCCGAAGAACAGCTATGCCACCACTGAGAACAAGA...CAGACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCCCCTGCGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTACCAGCCCCGCATCTTaGTCTTCTCACTCTCCCCAT +
Preference number: 4 (lower is better)
Translates to: GVVSFLRRLPSAQAPFLGTSPAS*SSHSPH
Trigger: ATGGGGAGAGTGAGAAGACCAAGATGCGGGGCTGGT...ACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGACCAGCCCCGCATCTTaGTCTTCTCACTCTCCCCAT +
Preference number: 4 (lower is better)
Translates to: VRIRGPCCPSAGPSVGASTSPAS*SSHSPH
Trigger: ATGGGGAGAGTGAGAAGACCAAGATGCGGGGCTGGT...CGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp CTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTTGTAGACATTTTCCGTaGGCCGGTGCATCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: LAGFANHIRGASAASQGLCRHFP*AGASPP
Trigger: CGGAGGAGATGCACCGGCTCACGGAAAATGTCTACA...AAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp TTCTCTGGACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTAGACATTTTCCGTaGGCCGGTGCATCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: FSGQEHALITLSWQVGTECRHFP*AGASPP
Trigger: CGGAGGAGATGCACCGGCTCACGGAAAATGTCTACA...CTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCAGAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp TGGACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGTCTGCTCCAGCTGCGTaGGCAGCTCATTGTGAAAAG +
Preference number: 4 (lower is better)
Translates to: WTGTCPDHPQLAGGDRVSSAPAA*AAHCEK
Trigger: CTTTTCACAATGAGCTGCTCACGCAGCTGGAGCAGA...CGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp ATGAGCGCAGGGGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCCTGCAGCTCCTTGTCTaGGTACTTCTGAGGGTTCTT +
Preference number: 4 (lower is better)
Translates to: MSAGAQRAAPWTLGDFRVLQLLV*VLLRVL
Trigger: AAGAACCCTCAGAAGTACTCAGACAAGGAGCTGCAG...GACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCCCCTGCGCTCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp GGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTGGGATCACCACGCCCTGCTTATTGCTaGTGGCATCGATGTACTGCA +
Preference number: 4 (lower is better)
Translates to: GAESSTMDPGGFQSLGSPRPAYC*WHRCTA
Trigger: TGCAGTACATCGATGCCATCAGCAATAAGCAGGGCG...TGGTGATCCCAGACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp GGCTGCAGCCTCCATCACAGGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCTCCAGGAATGGGATCTaGGATGACCAGGTTGGACTT +
Preference number: 4 (lower is better)
Translates to: GCSLHHRSGQLPQEAPKCSRNGI*DDQVGL
Trigger: AAGTCCAACCTGGTCATCTCAGATCCCATTCCTGGA...GCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCCTGTGATGGAGGCTGCAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp GACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGCTTCTCCCTCGCTCAGCTTGCTTTaGGACTGCGGGGGAGACAGG +
Preference number: 4 (lower is better)
Translates to: DTHKRRNLGGAGPEPASPSLSLL*DCGGDR
Trigger: CCTGTCTCCCCCGCAGTCTCAAAGCAAGCTGAGCGA...GGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075180.12
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp TTCTCTGGACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTTCTGGATCTGCCGGTaGACCTCAGCCATCTGGAAG +
Preference number: 4 (lower is better)
Translates to: FSGQEHALITLSWQVGTEFWICR*TSAIWK
Trigger: CTTCCAGATGGCTGAGGTGCACCGGCAGATCCAGAA...CTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCAGAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp GCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTCTGTCCAGTTCTACTTTCTaGTCCAGCTGCGTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: AGFANHIRGASAASQGLLSSSTF*SSCVSS
Trigger: GCTGCTCACGCAGCTGGAGCAGAAAGTAGAACTGGA...CAGAAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp AGGCTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGTTCTCCAGCTCGCCCTaGTTATTGCTGATGGCATCG +
Preference number: 4 (lower is better)
Translates to: RLAGFANHIRGASAASQGFSSSP*LLLMAS
Trigger: CGATGCCATCAGCAATAAGCAGGGCGAGCTGGAGAA...CCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp TCCACAGTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGCCTTGTCTAGGAGGTTaGCTGTGCTGCTGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: STVRIRGPCCPSAGPSVGPCLGG*LCCCSC
Trigger: GCAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGG...CCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAACTGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp GCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTACGTACACCGGAGTCCATGTGTCTGGGTGGGGAATaGCCGGGAGGACGTGCCGTA +
Preference number: 4 (lower is better)
Translates to: ARTLGVRCRITVRTPESMCLGGE*PGGRAV
Trigger: TACGGCACGTCCTCCCGGGCATTCCCCACCCAGACA...CATGGACTCCGGTGTACGTACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp AAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCAGCCCTGGCTCTCGCTaGCCAGCTCCCCCATCTTTA +
Preference number: 4 (lower is better)
Translates to: KVSMGIGSLPCKPAECPLSPGSR*PAPPSL
Trigger: TAAAGATGGGGGAGCTGGCCAGCGAGAGCCAGGGCT...GAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp CTTCTCTGGACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAAGCGTCTCTTCCAACTaGTTCTGGATCTGCCGGTGC +
Preference number: 4 (lower is better)
Translates to: LLWTGTCPDHPQLAGGDRSVSSN*FWICRC
Trigger: GCACCGGCAGATCCAGAACCAGTTGGAAGAGACGCT...TCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCAGAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp GGCCGATGTGAGGCGAGGCTAGGGAGTGGGGCATTGTGGTCTTCTCTGGACAGGAAGCAGCAGAGTTCTTaGCCACAGCGCACTGCTTTT +
Preference number: 4 (lower is better)
Translates to: GRCEARLGSGALWSSLDRKQQSS*PQRTAF
Trigger: AAAAGCAGTGCGCTGTGGCCAAGAACTCTGCTGCTT...CCTGTCCAGAGAAGACCACAATGCCCCACTCCCTAGCCTCGCCTCACATCGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp TGGGGTCAGCGTCCTCACACTGTGGACACCAGCGTGCCACTGCCACTGTGGAACAAGCAGCAGAGTTCTTaGCCACAGCGCACTGCTTTT +
Preference number: 4 (lower is better)
Translates to: WGQRPHTVDTSVPLPLWNKQQSS*PQRTAF
Trigger: AAAAGCAGTGCGCTGTGGCCAAGAACTCTGCTGCTT...GTTCCACAGTGGCAGTGGCACGCTGGTGTCCACAGTGTGAGGACGCTGACCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GGCTGCAGCCTCCATCACAGGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCTCTTGTTCTCAGTGGTaGCATAGCTGTTCTTCGGCG +
Preference number: 4 (lower is better)
Translates to: GCSLHHRSGQLPQEAPKCSCSQW*HSCSSA
Trigger: CGCCGAAGAACAGCTATGCCACCACTGAGAACAAGA...GCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCCTGTGATGGAGGCTGCAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TGCTGGCCCCTCTGTTGGGGCATCGGCCTCTTGAGGCAGCCACCTCACCAGGAAGTCATTGGTCACTGTTaGTTTCAGATGGACGTTGGC +
Preference number: 4 (lower is better)
Translates to: CWPLCWGIGLLRQPPHQEVIGHC*FQMDVG
Trigger: GCCAACGTCCATCTGAAACCAACAGTGACCAATGAC...TTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCCCAACAGAGGGGCCAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026436.10
3UTR CAA 72 bp ATGTGTGGATGGGTGGGTGGGCTTGTCTTGAGGTCTTaGGAATGTTCGCATGTGGCCGGGCAGCACCTGCTC +
Preference number: 4 (lower is better)
Translates to: MCGWVGGLVLRS*ECSHVAGQHLL
Trigger: GAGCAGGTGCTGCCCGGCCACATGCGAACATTCCAAAGACCTCAAGACAAGCCCACCCACCCATCCACACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp GCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTACGTACACCGGAGTCCATGTCTTGCCCATGGCGATaGAGTTGCGGAGGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: ARTLGVRCRITVRTPESMSCPWR*SCGGWG
Trigger: ACCCCAGCCTCCGCAACTTCATCGCCATGGGCAAGA...CATGGACTCCGGTGTACGTACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp CGATGTGAGGCGAGGCTAGGGAGTGGGGCATTGTGGTCTTCTCTGGACAGGAACTCTGCTCCAGCTGCGTaGGCAGCTCATTGTGAAAAG +
Preference number: 4 (lower is better)
Translates to: RCEARLGSGALWSSLDRNSAPAA*AAHCEK
Trigger: CTTTTCACAATGAGCTGCTCACGCAGCTGGAGCAGA...GTTCCTGTCCAGAGAAGACCACAATGCCCCACTCCCTAGCCTCGCCTCACATCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp CAGTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGCCCTGCTTATTGCTaGTGGCATCGATGTACTGCA +
Preference number: 4 (lower is better)
Translates to: QLGSEVPVAQVLAPLLGHRPAYC*WHRCTA
Trigger: TGCAGTACATCGATGCCATCAGCAATAAGCAGGGCG...ATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp AAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTCCTGCGCTCCTCAGTaGGTGCTGTCTTGTAGCCGT +
Preference number: 4 (lower is better)
Translates to: KVSMGIGSLPCKPAECPLSCAPQ*VLSCSR
Trigger: ACGGCTACAAGACAGCACTCACTGAGGAGCGCAGGA...GAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp TTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGGAATGGGATCTGAGATaGCCAGGTTGGACTTGGAAG +
Preference number: 4 (lower is better)
Translates to: LGSEVPVAQVLAPLLGHREWDLR*PGWTWK
Trigger: CTTCCAAGTCCAACCTGGTCATCTCAGATCCCATTC...CCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp TCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGAATGGGATCTGAGATaGCCAGGTTGGACTTGGAAG +
Preference number: 4 (lower is better)
Translates to: SSGGSQVPRPLFLVQPLEEWDLR*PGWTWK
Trigger: CTTCCAAGTCCAACCTGGTCATCTCAGATCCCATTC...TTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp AGGCTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGTCCAGGAATGGGATCTaGGATGACCAGGTTGGACTT +
Preference number: 4 (lower is better)
Translates to: RLAGFANHIRGASAASQGSRNGI*DDQVGL
Trigger: AAGTCCAACCTGGTCATCTCAGATCCCATTCCTGGA...CCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp GCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTCTGTCCAGGAATGGGATCTaGGATGACCAGGTTGGACTT +
Preference number: 4 (lower is better)
Translates to: AGFANHIRGASAASQGLLSRNGI*DDQVGL
Trigger: AAGTCCAACCTGGTCATCTCAGATCCCATTCCTGGA...CAGAAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp CTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTAGCTGCCATGGAGCTTaGACGTGGCAGTGTCTTGTT +
Preference number: 4 (lower is better)
Translates to: LAGFANHIRGASAASQGLSCHGA*TWQCLV
Trigger: AACAAGACACTGCCACGTTCAAGCTCCATGGCAGCT...AAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp ACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGATGAGCTGCCATGGAGCTTaGACGTGGCAGTGTCTTGTT +
Preference number: 4 (lower is better)
Translates to: TGTCPDHPQLAGGDRVSMSCHGA*TWQCLV
Trigger: AACAAGACACTGCCACGTTCAAGCTCCATGGCAGCT...CATCGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp ATGAGCGCAGGGGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCAGCGAAGGTGACACCTaGCAGTGCTTTCTCATAGTT +
Preference number: 4 (lower is better)
Translates to: MSAGAQRAAPWTLGDFRVSEGDT*QCFLIV
Trigger: AACTATGAGAAAGCACTGGCAGGTGTCACCTTCGCT...GACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCCCCTGCGCTCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp ATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCCTCTATGGCATCGATGTACTaGAGCTCCTTGTCTGAGTAC +
Preference number: 4 (lower is better)
Translates to: IRGPCCPSAGPSVGASASMASMY*SSLSEY
Trigger: GTACTCAGACAAGGAGCTGCAGTACATCGATGCCAT...AGAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp ATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGGCGCTCCTCAGTGAGTaGTGTCTTGTAGCCGTCAGA +
Preference number: 4 (lower is better)
Translates to: MGIGSLPCKPAECPLCVQALLSE*CLVAVR
Trigger: TCTGACGGCTACAAGACAGCACTCACTGAGGAGCGC...CTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp GCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTACGTACACCGGAGTCCATGTCGGCACAGGCTTGCTaGCACAGAGGCAGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: ARTLGVRCRITVRTPESMSAQAC*HRGSFW
Trigger: CCAGAAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGA...CATGGACTCCGGTGTACGTACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GGTGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACCGGGTCGGCACAGGCTTaGTGCCACAGAGGCAGCTTC +
Preference number: 4 (lower is better)
Translates to: GGKENNPRTNQRELRRGTGSAQA*CHRGSF
Trigger: GAAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCC...GGTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp TCCATCACAGGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTGAAGGATGGAGCCATTaGTATTGGCCATCTGTTGCA +
Preference number: 4 (lower is better)
Translates to: SITGVVSFLRRLPSAQAPEGWSH*YWPSVA
Trigger: TGCAACAGATGGCCAATAGCAATGGCTCCATCCTTC...AGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCCTGTGATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GGCCGATGTGAGGCGAGGCTAGGGAGTGGGGCATTGTGGTCTTCTCTGGACAGGGAAGGATGGAGCCATTaGTATTGGCCATCTGTTGCA +
Preference number: 4 (lower is better)
Translates to: GRCEARLGSGALWSSLDREGWSH*YWPSVA
Trigger: TGCAACAGATGGCCAATAGCAATGGCTCCATCCTTC...CCTGTCCAGAGAAGACCACAATGCCCCACTCCCTAGCCTCGCCTCACATCGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp GGTGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACCTGTCTGGGTGGGGAATaGCCGGGAGGACGTGCCGTA +
Preference number: 4 (lower is better)
Translates to: GGKENNPRTNQRELRRGTCLGGE*PGGRAV
Trigger: TACGGCACGTCCTCCCGGGCATTCCCCACCCAGACA...GGTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GCCAGCTGTAGGGCTGAGCCCACTGGGCCTTGGGCTCCGCTGCCCAGAATTCAGCAGCACTTAGATACCTaGAGTCCAGTTCTACTTTCT +
Preference number: 4 (lower is better)
Translates to: ASCRAEPTGPWAPLPRIQQHLDT*SPVLLS
Trigger: AGAAAGTAGAACTGGACTCCAGGTATCTAAGTGCTG...CTGAATTCTGGGCAGCGGAGCCCAAGGCCCAGTGGGCTCAGCCCTACAGCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp CAGTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATATCTGTTGCATCAGCTaGACAGCACGGTCTGGGATC +
Preference number: 4 (lower is better)
Translates to: QLGSEVPVAQVLAPLLGHICCIS*TARSGI
Trigger: GATCCCAGACCGTGCTGTCCAGCTGATGCAACAGAT...ATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp GCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTCTGTCTTGTTCTCAGTGGTaGCATAGCTGTTCTTCGGCG +
Preference number: 4 (lower is better)
Translates to: AGFANHIRGASAASQGLLSCSQW*HSCSSA
Trigger: CGCCGAAGAACAGCTATGCCACCACTGAGAACAAGA...CAGAAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
3UTR CAA 72 bp GGAGCCCGTCAGCTGAGCAGAGGGGCTGATCTGTCATaGGTCACTGTTGGTTTCAGATGGACGTTGGCGAAG +
Preference number: 4 (lower is better)
Translates to: GARQLSRGADLS*VTVGFRWTLAK
Trigger: CTTCGCCAACGTCCATCTGAAACCAACAGTGACCAATGACAGATCAGCCCCTCTGCTCAGCTGACGGGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp CTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTCTGCAGCTCCTTGTCTaGGTACTTCTGAGGGTTCTT +
Preference number: 4 (lower is better)
Translates to: LAGFANHIRGASAASQGLLQLLV*VLLRVL
Trigger: AAGAACCCTCAGAAGTACTCAGACAAGGAGCTGCAG...AAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGATGCAGAGCGAAGGTGACACCTaGCAGTGCTTTCTCATAGTT +
Preference number: 4 (lower is better)
Translates to: GTCPDHPQLAGGDRVSMQSEGDT*QCFLIV
Trigger: AACTATGAGAAAGCACTGGCAGGTGTCACCTTCGCT...CTGCATCGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp ATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGTCCAGTTCTACTTTCTaGTCCAGCTGCGTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: MGIGSLPCKPAECPLCVQSSSTF*SSCVSS
Trigger: GCTGCTCACGCAGCTGGAGCAGAAAGTAGAACTGGA...CTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp CAGGACCCTAAGTCCTGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGAGCGCTCCTCAGTGAGTaGTGTCTTGTAGCCGTCAGA +
Preference number: 4 (lower is better)
Translates to: QDPKSCPVLEDARTLGVRALLSE*CLVAVR
Trigger: TCTGACGGCTACAAGACAGCACTCACTGAGGAGCGC...TCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACAGGACTTAGGGTCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp CAGGACCCTAAGTCCTGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGAGGGCCAGCAACTCCTTaGCCTTGGAATGGTAAGCAG +
Preference number: 4 (lower is better)
Translates to: QDPKSCPVLEDARTLGVRGPATP*PWNGKQ
Trigger: CTGCTTACCATTCCAAGGGCAAGGAGTTGCTGGCCC...TCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACAGGACTTAGGGTCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACCGGAGCCCTGGCTCTCGCTaGCCAGCTCCCCCATCTTTA +
Preference number: 4 (lower is better)
Translates to: WERKQPKNKPTRAEEGNRSPGSR*PAPPSL
Trigger: TAAAGATGGGGGAGCTGGCCAGCGAGAGCCAGGGCT...CCGGTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCCTCTTCTCCTCTGTTCCGTTTaGTATTTCTTCAGTGCAGCA +
Preference number: 4 (lower is better)
Translates to: SEVPVAQVLAPLLGHRPLLLCSV*YFFSAA
Trigger: TGCTGCACTGAAGAAATACCAAACGGAACAGAGGAG...AAGAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp GATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGATGCAGAGGAGCCCGTCACTCCTCTGTTCCGTTTaGTATTTCTTCAGTGCAGCA +
Preference number: 4 (lower is better)
Translates to: DHPQLAGGDRVSMQRSPSLLCSV*YFFSAA
Trigger: TGCTGCACTGAAGAAATACCAAACGGAACAGAGGAG...TGACGGGCTCCTCTGCATCGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp GCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTACGTACACCGGAGTCCATGGGTCTGGGATCTTGTTaGGGTCGGCACAGGCTTGCT +
Preference number: 4 (lower is better)
Translates to: ARTLGVRCRITVRTPESMGLGSC*GRHRLA
Trigger: AGCAAGCCTGTGCCGACCCCAACAAGATCCCAGACC...CATGGACTCCGGTGTACGTACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp ATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGGGGCACTTGGAAGGATaGAGCCATTGCTATTGGCCA +
Preference number: 4 (lower is better)
Translates to: MGIGSLPCKPAECPLCVQGHLEG*SHCYWP
Trigger: TGGCCAATAGCAATGGCTCCATCCTTCCAAGTGCCC...CTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp AGTTACCAAGACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTTGGTGCCAGCTCAGGTaGCACTGGCAAGGGCTTGGC +
Preference number: 4 (lower is better)
Translates to: SYQDTHKRRNLGGAGPEPWCQLR*HWQGLG
Trigger: GCCAAGCCCTTGCCAGTGCCACCTGAGCTGGCACCA...AGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTCTTGGTAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GGGTGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACGACAGGGATTTGGGCTaGGCAGCCTTTCGGTCAGCC +
Preference number: 4 (lower is better)
Translates to: GWERKQPKNKPTRAEEGNDRDLG*AAFRSA
Trigger: GGCTGACCGAAAGGCTGCCCAGCCCAAATCCCTGTC...GTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075180.12
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp ACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGATGTCTTGTTCTCAGTGGTaGCATAGCTGTTCTTCGGCG +
Preference number: 4 (lower is better)
Translates to: TGTCPDHPQLAGGDRVSMSCSQW*HSCSSA
Trigger: CGCCGAAGAACAGCTATGCCACCACTGAGAACAAGA...CATCGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp GCCTTGGGCTCCGCTGCCCAGAATTCAGTGTGTGAAGAGACAAAACCAGTAGCCACCAGCCCCGCATCTTaGTCTTCTCACTCTCCCCAT +
Preference number: 4 (lower is better)
Translates to: ALGSAAQNSVCEETKPVATSPAS*SSHSPH
Trigger: ATGGGGAGAGTGAGAAGACCAAGATGCGGGGCTGGT...GGCTACTGGTTTTGTCTCTTCACACACTGAATTCTGGGCAGCGGAGCCCAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGAGGTTTCAGATGGACGTTaGCGAAGGGATTCCTGCTCA +
Preference number: 4 (lower is better)
Translates to: GNRLPSLQAGRMSSLCPEVSDGR*RRDSCS
Trigger: TGAGCAGGAATCCCTTCGCCAACGTCCATCTGAAAC...CTCTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026436.10
CDS-3UTR TCA 90 bp GCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTACGTACACCGGAGTCCATGTGTAGACATTTTCCGTaGGCCGGTGCATCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: ARTLGVRCRITVRTPESMCRHFP*AGASPP
Trigger: CGGAGGAGATGCACCGGCTCACGGAAAATGTCTACA...CATGGACTCCGGTGTACGTACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp AGTTACCAAGACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTTCTTGCCCATGGCGATaGAGTTGCGGAGGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: SYQDTHKRRNLGGAGPEPSCPWR*SCGGWG
Trigger: ACCCCAGCCTCCGCAACTTCATCGCCATGGGCAAGA...AGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTCTTGGTAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp CAGTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATGTGAGCAGCTCATTGTaGAAAGACTTCAGCGTCTCT +
Preference number: 4 (lower is better)
Translates to: QLGSEVPVAQVLAPLLGHVSSSL*KDFSVS
Trigger: AGAGACGCTGAAGTCTTTTCACAATGAGCTGCTCAC...ATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp CAGGACCCTAAGTCCTGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGAAGCTGCCATGGAGCTTaGACGTGGCAGTGTCTTGTT +
Preference number: 4 (lower is better)
Translates to: QDPKSCPVLEDARTLGVRSCHGA*TWQCLV
Trigger: AACAAGACACTGCCACGTTCAAGCTCCATGGCAGCT...TCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACAGGACTTAGGGTCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp CAGGACCCTAAGTCCTGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGATCCAGTTCTACTTTCTaGTCCAGCTGCGTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: QDPKSCPVLEDARTLGVRSSSTF*SSCVSS
Trigger: GCTGCTCACGCAGCTGGAGCAGAAAGTAGAACTGGA...TCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACAGGACTTAGGGTCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GAGCAGGCCAAGACACCAAGACCCAGCAGGATGGAGGAGGGGCTCACTGTACTAATGGCATCGATGTACTaGAGCTCCTTGTCTGAGTAC +
Preference number: 4 (lower is better)
Translates to: EQAKTPRPSRMEEGLTVLMASMY*SSLSEY
Trigger: GTACTCAGACAAGGAGCTGCAGTACATCGATGCCAT...TAGTACAGTGAGCCCCTCCTCCATCCTGCTGGGTCTTGGTGTCTTGGCCTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp AGTTACCAAGACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGGAGGTTGCCTGTGCTaGTGCTCTTGCCCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: SYQDTHKRRNLGGAGPEPGGCLC*CSCPAA
Trigger: TGCAGCAGGGCAAGAGCAGCAGCACAGGCAACCTCC...AGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTCTTGGTAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGGCAGCACTTAGATACCTaGAGTCCAGTTCTACTTTCT +
Preference number: 4 (lower is better)
Translates to: SGGSQVPRPLFLVQPLEGQHLDT*SPVLLS
Trigger: AGAAAGTAGAACTGGACTCCAGGTATCTAAGTGCTG...CCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTCTCCTCTGTTCCGTTTaGTATTTCTTCAGTGCAGCA +
Preference number: 4 (lower is better)
Translates to: GVVSFLRRLPSAQAPFLGLLCSV*YFFSAA
Trigger: TGCTGCACTGAAGAAATACCAAACGGAACAGAGGAG...ACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp CTTAGAAAAGGGATGTGCGTCGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAAAGCAGCAGAGTTCTTaGCCACAGCGCACTGCTTTT +
Preference number: 4 (lower is better)
Translates to: LRKGMCVVNTTGLGQQVPKQQSS*PQRTAF
Trigger: AAAAGCAGTGCGCTGTGGCCAAGAACTCTGCTGCTT...TGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACGACGCACATCCCTTTTCTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACCGGGGTCTGGGATCTTGTTaGGGTCGGCACAGGCTTGCT +
Preference number: 4 (lower is better)
Translates to: WERKQPKNKPTRAEEGNRGLGSC*GRHRLA
Trigger: AGCAAGCCTGTGCCGACCCCAACAAGATCCCAGACC...CCGGTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TGTGAAGAGACAAAACCAGTAGCCACTGAGTCCAGTGTGCCTGTTTCTAAAGTTTGCCGGCTGTCTGGGTaGGGAATGCCCGGGAGGACG +
Preference number: 4 (lower is better)
Translates to: CEETKPVATESSVPVSKVCRLSG*GMPGRT
Trigger: CGTCCTCCCGGGCATTCCCCACCCAGACAGCCGGCA...AACTTTAGAAACAGGCACACTGGACTCAGTGGCTACTGGTTTTGTCTCTTCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp TTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCCTTTGGCAGCGAAGGTaGCACCTGCCAGTGCTTTCT +
Preference number: 4 (lower is better)
Translates to: FKSQHGNRLPSLQAGRMSLWQRR*HLPVLS
Trigger: AGAAAGCACTGGCAGGTGTCACCTTCGCTGCCAAAG...GGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp GCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTACGTACACCGGAGTCCATGTCTGCTCCAGCTGCGTaGGCAGCTCATTGTGAAAAG +
Preference number: 4 (lower is better)
Translates to: ARTLGVRCRITVRTPESMSAPAA*AAHCEK
Trigger: CTTTTCACAATGAGCTGCTCACGCAGCTGGAGCAGA...CATGGACTCCGGTGTACGTACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp GACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGCTTCTCCCCTGCAGCTCCTTGTCTaGGTACTTCTGAGGGTTCTT +
Preference number: 4 (lower is better)
Translates to: DTHKRRNLGGAGPEPASPLQLLV*VLLRVL
Trigger: AAGAACCCTCAGAAGTACTCAGACAAGGAGCTGCAG...GGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp CAGGACCCTAAGTCCTGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGAGAATGGGATCTGAGATaGCCAGGTTGGACTTGGAAG +
Preference number: 4 (lower is better)
Translates to: QDPKSCPVLEDARTLGVREWDLR*PGWTWK
Trigger: CTTCCAAGTCCAACCTGGTCATCTCAGATCCCATTC...TCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACAGGACTTAGGGTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp TTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTTTTCCGTGAGCCGGTaGATCTCCTCCGAGCGTGAA +
Preference number: 4 (lower is better)
Translates to: FKSQHGNRLPSLQAGRMSFSVSR*ISSERE
Trigger: TTCACGCTCGGAGGAGATGCACCGGCTCACGGAAAA...GGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp CTTAGAAAAGGGATGTGCGTCGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAAGCGAAGGTGACACCTaGCAGTGCTTTCTCATAGTT +
Preference number: 4 (lower is better)
Translates to: LRKGMCVVNTTGLGQQVPSEGDT*QCFLIV
Trigger: AACTATGAGAAAGCACTGGCAGGTGTCACCTTCGCT...TGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACGACGCACATCCCTTTTCTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp AATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGAGGCTAGCGAAGGTGACACCTaGCAGTGCTTTCTCATAGTT +
Preference number: 4 (lower is better)
Translates to: NRLPSLQAGRMSSLCPEASEGDT*QCFLIV
Trigger: AACTATGAGAAAGCACTGGCAGGTGTCACCTTCGCT...AGCCTCTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp GGGTGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACTTGGCCACAGCGCACTaGTTTTCCACCAGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: GWERKQPKNKPTRAEEGNLATAH*FSTRKQ
Trigger: CTGCTTCCTGGTGGAAAAGCAGTGCGCTGTGGCCAA...GTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GGTGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACCTTGGCCACAGCGCACTaGTTTTCCACCAGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: GGKENNPRTNQRELRRGTLATAH*FSTRKQ
Trigger: CTGCTTCCTGGTGGAAAAGCAGTGCGCTGTGGCCAA...GGTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp CTAAAGTTACCAAGACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGGGTCGGCACAGGCTTaGTGCCACAGAGGCAGCTTC +
Preference number: 4 (lower is better)
Translates to: LKLPRHTQEEKLRRSWTRGSAQA*CHRGSF
Trigger: GAAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCC...TCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTCTTGGTAACTTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp ATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGGAAGGATGGAGCCATTaGTATTGGCCATCTGTTGCA +
Preference number: 4 (lower is better)
Translates to: MGIGSLPCKPAECPLCVQEGWSH*YWPSVA
Trigger: TGCAACAGATGGCCAATAGCAATGGCTCCATCCTTC...CTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp AAAAGTTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAAAGCCCTGGCTCTCGCTaGCCAGCTCCCCCATCTTTA +
Preference number: 4 (lower is better)
Translates to: KSLKVSMGIGSLPCKPAESPGSR*PAPPSL
Trigger: TAAAGATGGGGGAGCTGGCCAGCGAGAGCCAGGGCT...TTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAACTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp TTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCAGCGTCTCTTCCAACTaGTTCTGGATCTGCCGGTGC +
Preference number: 4 (lower is better)
Translates to: FKSQHGNRLPSLQAGRMSSVSSN*FWICRC
Trigger: GCACCGGCAGATCCAGAACCAGTTGGAAGAGACGCT...GGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp GCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTACGTACACCGGAGTCCATGATCTGTTGCATCAGCTaGACAGCACGGTCTGGGATC +
Preference number: 4 (lower is better)
Translates to: ARTLGVRCRITVRTPESMICCIS*TARSGI
Trigger: GATCCCAGACCGTGCTGTCCAGCTGATGCAACAGAT...CATGGACTCCGGTGTACGTACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp GCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTACGTACACCGGAGTCCATGGGGCACTTGGAAGGATaGAGCCATTGCTATTGGCCA +
Preference number: 4 (lower is better)
Translates to: ARTLGVRCRITVRTPESMGHLEG*SHCYWP
Trigger: TGGCCAATAGCAATGGCTCCATCCTTCCAAGTGCCC...CATGGACTCCGGTGTACGTACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TGTCATTGGTCACTGTTGGTTTCAGATGGACGTTGGCGAAGGGATTCTAACTCTCAGCTCAGGTGGCACTaGCAAGGGCTTGGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: CHWSLLVSDGRWRRDSNSQLRWH*QGLGSR
Trigger: CCTGGAGCCAAGCCCTTGCCAGTGCCACCTGAGCTG...AGAGTTAGAATCCCTTCGCCAACGTCCATCTGAAACCAACAGTGACCAATGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp TGTCATTGGTCACTGTTGGTTTCAGATGGACGTTGGCGAAGGGATTCTAACTCTTCTTGCCCATGGCGATaGAGTTGCGGAGGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: CHWSLLVSDGRWRRDSNSSCPWR*SCGGWG
Trigger: ACCCCAGCCTCCGCAACTTCATCGCCATGGGCAAGA...AGAGTTAGAATCCCTTCGCCAACGTCCATCTGAAACCAACAGTGACCAATGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp CAGGACCCTAAGTCCTGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGAATGGCATCGATGTACTaGAGCTCCTTGTCTGAGTAC +
Preference number: 4 (lower is better)
Translates to: QDPKSCPVLEDARTLGVRMASMY*SSLSEY
Trigger: GTACTCAGACAAGGAGCTGCAGTACATCGATGCCAT...TCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACAGGACTTAGGGTCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp TGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACCGGCTATTGGCCATCTGTTaGATCAGCTGGACAGCACGG +
Preference number: 4 (lower is better)
Translates to: WERKQPKNKPTRAEEGNRLLAIC*ISWTAR
Trigger: CCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAG...CCGGTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGCTTCTCCCGAAGGATGGAGCCATTaGTATTGGCCATCTGTTGCA +
Preference number: 4 (lower is better)
Translates to: DTHKRRNLGGAGPEPASPEGWSH*YWPSVA
Trigger: TGCAACAGATGGCCAATAGCAATGGCTCCATCCTTC...GGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp AGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCGGGCTGATCTGTCATTaGTCACTGTTGGTTTCAGAT +
Preference number: 4 (lower is better)
Translates to: SMGIGSLPCKPAECPLCVGLICH*SLLVSD
Trigger: ATCTGAAACCAACAGTGACCAATGACAGATCAGCCC...GACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026436.10
CDS-3UTR TCA 90 bp TTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCCAGGAATGGGATCTaGGATGACCAGGTTGGACTT +
Preference number: 4 (lower is better)
Translates to: FKSQHGNRLPSLQAGRMSSRNGI*DDQVGL
Trigger: AAGTCCAACCTGGTCATCTCAGATCCCATTCCTGGA...GGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp TGTGAAGAGACAAAACCAGTAGCCACTGAGTCCAGTGTGCCTGTTTCTAAAGTTGGAGGTTGCCTGTGCTaGTGCTCTTGCCCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: CEETKPVATESSVPVSKVGGCLC*CSCPAA
Trigger: TGCAGCAGGGCAAGAGCAGCAGCACAGGCAACCTCC...AACTTTAGAAACAGGCACACTGGACTCAGTGGCTACTGGTTTTGTCTCTTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TTAAATATAAAACAGGATCTGTCTGTGTCTGAGCTGCTGCTGCTGCTGTCAGACAGTTCCTTAGAGCCCTaGCTCTCGCTGGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LNIKQDLSVSELLLLLSDSSLEP*LSLASS
Trigger: GGAGCTGGCCAGCGAGAGCCAGGGCTCTAAGGAACT...GTCTGACAGCAGCAGCAGCAGCTCAGACACAGACAGATCCTGTTTTATATTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp CATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCACAGCACTTAGATACCTaGAGTCCAGTTCTACTTTCT +
Preference number: 4 (lower is better)
Translates to: HGNRLPSLQAGRMSSLCPQHLDT*SPVLLS
Trigger: AGAAAGTAGAACTGGACTCCAGGTATCTAAGTGCTG...TGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp ATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGCAGCACTTAGATACCTaGAGTCCAGTTCTACTTTCT +
Preference number: 4 (lower is better)
Translates to: MGIGSLPCKPAECPLCVQQHLDT*SPVLLS
Trigger: AGAAAGTAGAACTGGACTCCAGGTATCTAAGTGCTG...CTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp TTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCAAGCAGCAGAGTTCTTaGCCACAGCGCACTGCTTTT +
Preference number: 4 (lower is better)
Translates to: FKSQHGNRLPSLQAGRMSKQQSS*PQRTAF
Trigger: AAAAGCAGTGCGCTGTGGCCAAGAACTCTGCTGCTT...GGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CCA 90 bp TGTGAAGAGACAAAACCAGTAGCCACTGAGTCCAGTGTGCCTGTTTCTAAAGTTCATCCGCCCCACAAATaGTGCCAGCTCAGGTGGCAC +
Preference number: 4 (lower is better)
Translates to: CEETKPVATESSVPVSKVHPPHK*CQLRWH
Trigger: GTGCCACCTGAGCTGGCACCATTTGTGGGGCGGATG...AACTTTAGAAACAGGCACACTGGACTCAGTGGCTACTGGTTTTGTCTCTTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075180.12
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp GGGTGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACGTGAGCAGCTCATTGTaGAAAGACTTCAGCGTCTCT +
Preference number: 4 (lower is better)
Translates to: GWERKQPKNKPTRAEEGNVSSSL*KDFSVS
Trigger: AGAGACGCTGAAGTCTTTTCACAATGAGCTGCTCAC...GTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp AGTTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCTGCAGCTCCTTGTCTaGGTACTTCTGAGGGTTCTT +
Preference number: 4 (lower is better)
Translates to: SLKVSMGIGSLPCKPAECLQLLV*VLLRVL
Trigger: AAGAACCCTCAGAAGTACTCAGACAAGGAGCTGCAG...ACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp AGTTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTGAATGGGATCTGAGATaGCCAGGTTGGACTTGGAAG +
Preference number: 4 (lower is better)
Translates to: SLKVSMGIGSLPCKPAECEWDLR*PGWTWK
Trigger: CTTCCAAGTCCAACCTGGTCATCTCAGATCCCATTC...ACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR TCA 90 bp TGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTAAGCTGCCATGGAGCTTaGACGTGGCAGTGTCTTGTT +
Preference number: 4 (lower is better)
Translates to: CPVLEDARTLGVRCRITVSCHGA*TWQCLV
Trigger: AACAAGACACTGCCACGTTCAAGCTCCATGGCAGCT...TACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp GGGTGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACATGGCATCGATGTACTaGAGCTCCTTGTCTGAGTAC +
Preference number: 4 (lower is better)
Translates to: GWERKQPKNKPTRAEEGNMASMY*SSLSEY
Trigger: GTACTCAGACAAGGAGCTGCAGTACATCGATGCCAT...GTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp ATAAATAAAGCCTTTATTCCAACAGTTGACCGCAGTACAGGGCACAGTTCAGATTCGGCGTCACGCTCTTaGGCACGGGGAGTGTGTTGG +
Preference number: 4 (lower is better)
Translates to: INKAFIPTVDRSTGHSSDSASRS*ARGVCW
Trigger: CCAACACACTCCCCGTGCGCAAGAGCGTGACGCCGA...ATCTGAACTGTGCCCTGTACTGCGGTCAACTGTTGGAATAAAGGCTTTATTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTAATCTGTTGCATCAGCTaGACAGCACGGTCTGGGATC +
Preference number: 4 (lower is better)
Translates to: CPVLEDARTLGVRCRITVICCIS*TARSGI
Trigger: GATCCCAGACCGTGCTGTCCAGCTGATGCAACAGAT...TACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp AAAAGTTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAAATCTGTTGCATCAGCTaGACAGCACGGTCTGGGATC +
Preference number: 4 (lower is better)
Translates to: KSLKVSMGIGSLPCKPAEICCIS*TARSGI
Trigger: GATCCCAGACCGTGCTGTCCAGCTGATGCAACAGAT...TTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAACTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp CTAAAGTTACCAAGACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGATTCTCCAGCTCGCCCTaGTTATTGCTGATGGCATCG +
Preference number: 4 (lower is better)
Translates to: LKLPRHTQEEKLRRSWTRFSSSP*LLLMAS
Trigger: CGATGCCATCAGCAATAAGCAGGGCGAGCTGGAGAA...TCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTCTTGGTAACTTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp TGTCATTGGTCACTGTTGGTTTCAGATGGACGTTGGCGAAGGGATTCTAACTCTCTATTGGCCATCTGTTaGATCAGCTGGACAGCACGG +
Preference number: 4 (lower is better)
Translates to: CHWSLLVSDGRWRRDSNSLLAIC*ISWTAR
Trigger: CCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAG...AGAGTTAGAATCCCTTCGCCAACGTCCATCTGAAACCAACAGTGACCAATGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
CDS-3UTR GCA 90 bp AAATTAGAACAACACAGAAAGTTCTTTACACAGGTCCAGGTTCTGGCTGTGTTTTGTCTGGGTGGGGAATaGCCGGGAGGACGTGCCGTA +
Preference number: 4 (lower is better)
Translates to: KLEQHRKFFTQVQVLAVFCLGGE*PGGRAV
Trigger: TACGGCACGTCCTCCCGGGCATTCCCCACCCAGACA...AAACACAGCCAGAACCTGGACCTGTGTAAAGAACTTTCTGTGTTGTTCTAATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TTAAATATAAAACAGGATCTGTCTGTGTCTGAGCTGCTGCTGCTGCTGTCAGACAGCGTCTCTTCCAACTaGTTCTGGATCTGCCGGTGC +
Preference number: 4 (lower is better)
Translates to: LNIKQDLSVSELLLLLSDSVSSN*FWICRC
Trigger: GCACCGGCAGATCCAGAACCAGTTGGAAGAGACGCT...GTCTGACAGCAGCAGCAGCAGCTCAGACACAGACAGATCCTGTTTTATATTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp CTAAAGTTACCAAGACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGGGCACTTGGAAGGATaGAGCCATTGCTATTGGCCA +
Preference number: 4 (lower is better)
Translates to: LKLPRHTQEEKLRRSWTRGHLEG*SHCYWP
Trigger: TGGCCAATAGCAATGGCTCCATCCTTCCAAGTGCCC...TCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTCTTGGTAACTTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp TGTGAAGAGACAAAACCAGTAGCCACTGAGTCCAGTGTGCCTGTTTCTAAAGTTTCTGCTCCAGCTGCGTaGGCAGCTCATTGTGAAAAG +
Preference number: 4 (lower is better)
Translates to: CEETKPVATESSVPVSKVSAPAA*AAHCEK
Trigger: CTTTTCACAATGAGCTGCTCACGCAGCTGGAGCAGA...AACTTTAGAAACAGGCACACTGGACTCAGTGGCTACTGGTTTTGTCTCTTCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp TTAAATATAAAACAGGATCTGTCTGTGTCTGAGCTGCTGCTGCTGCTGTCAGACCGCCCTGCTTATTGCTaGTGGCATCGATGTACTGCA +
Preference number: 4 (lower is better)
Translates to: LNIKQDLSVSELLLLLSDRPAYC*WHRCTA
Trigger: TGCAGTACATCGATGCCATCAGCAATAAGCAGGGCG...GTCTGACAGCAGCAGCAGCAGCTCAGACACAGACAGATCCTGTTTTATATTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp TTAAATATAAAACAGGATCTGTCTGTGTCTGAGCTGCTGCTGCTGCTGTCAGACTCCAGTTCTACTTTCTaGTCCAGCTGCGTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: LNIKQDLSVSELLLLLSDSSSTF*SSCVSS
Trigger: GCTGCTCACGCAGCTGGAGCAGAAAGTAGAACTGGA...GTCTGACAGCAGCAGCAGCAGCTCAGACACAGACAGATCCTGTTTTATATTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp TGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTAGAAGGATGGAGCCATTaGTATTGGCCATCTGTTGCA +
Preference number: 4 (lower is better)
Translates to: CPVLEDARTLGVRCRITVEGWSH*YWPSVA
Trigger: TGCAACAGATGGCCAATAGCAATGGCTCCATCCTTC...TACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp ATAAATAAAGCCTTTATTCCAACAGTTGACCGCAGTACAGGGCACAGTTCAGATCTTTGGCAGCGAAGGTaGCACCTGCCAGTGCTTTCT +
Preference number: 4 (lower is better)
Translates to: INKAFIPTVDRSTGHSSDLWQRR*HLPVLS
Trigger: AGAAAGCACTGGCAGGTGTCACCTTCGCTGCCAAAG...ATCTGAACTGTGCCCTGTACTGCGGTCAACTGTTGGAATAAAGGCTTTATTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp TTGCTGTTTTGTGTCTACATTCATCCATTGCACATGGAATCCCCTGGATTTGAATTTTCCGTGAGCCGGTaGATCTCCTCCGAGCGTGAA +
Preference number: 4 (lower is better)
Translates to: LLFCVYIHPLHMESPGFEFSVSR*ISSERE
Trigger: TTCACGCTCGGAGGAGATGCACCGGCTCACGGAAAA...TTCAAATCCAGGGGATTCCATGTGCAATGGATGAATGTAGACACAAAACAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp TTGCTGTTTTGTGTCTACATTCATCCATTGCACATGGAATCCCCTGGATTTGAAGGGCCAGCAACTCCTTaGCCTTGGAATGGTAAGCAG +
Preference number: 4 (lower is better)
Translates to: LLFCVYIHPLHMESPGFEGPATP*PWNGKQ
Trigger: CTGCTTACCATTCCAAGGGCAAGGAGTTGCTGGCCC...TTCAAATCCAGGGGATTCCATGTGCAATGGATGAATGTAGACACAAAACAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TTGCTGTTTTGTGTCTACATTCATCCATTGCACATGGAATCCCCTGGATTTGAAAGCGTCTCTTCCAACTaGTTCTGGATCTGCCGGTGC +
Preference number: 4 (lower is better)
Translates to: LLFCVYIHPLHMESPGFESVSSN*FWICRC
Trigger: GCACCGGCAGATCCAGAACCAGTTGGAAGAGACGCT...TTCAAATCCAGGGGATTCCATGTGCAATGGATGAATGTAGACACAAAACAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp AAATTAGAACAACACAGAAAGTTCTTTACACAGGTCCAGGTTCTGGCTGTGTTTCTTTGGCAGCGAAGGTaGCACCTGCCAGTGCTTTCT +
Preference number: 4 (lower is better)
Translates to: KLEQHRKFFTQVQVLAVFLWQRR*HLPVLS
Trigger: AGAAAGCACTGGCAGGTGTCACCTTCGCTGCCAAAG...AAACACAGCCAGAACCTGGACCTGTGTAAAGAACTTTCTGTGTTGTTCTAATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR TCA 90 bp TGTGAAGAGACAAAACCAGTAGCCACTGAGTCCAGTGTGCCTGTTTCTAAAGTTGTGAGCAGCTCATTGTaGAAAGACTTCAGCGTCTCT +
Preference number: 4 (lower is better)
Translates to: CEETKPVATESSVPVSKVVSSSL*KDFSVS
Trigger: AGAGACGCTGAAGTCTTTTCACAATGAGCTGCTCAC...AACTTTAGAAACAGGCACACTGGACTCAGTGGCTACTGGTTTTGTCTCTTCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp TTAAATATAAAACAGGATCTGTCTGTGTCTGAGCTGCTGCTGCTGCTGTCAGACAGCGAAGGTGACACCTaGCAGTGCTTTCTCATAGTT +
Preference number: 4 (lower is better)
Translates to: LNIKQDLSVSELLLLLSDSEGDT*QCFLIV
Trigger: AACTATGAGAAAGCACTGGCAGGTGTCACCTTCGCT...GTCTGACAGCAGCAGCAGCAGCTCAGACACAGACAGATCCTGTTTTATATTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp AAATTAGAACAACACAGAAAGTTCTTTACACAGGTCCAGGTTCTGGCTGTGTTTTTGGCCACAGCGCACTaGTTTTCCACCAGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: KLEQHRKFFTQVQVLAVFLATAH*FSTRKQ
Trigger: CTGCTTCCTGGTGGAAAAGCAGTGCGCTGTGGCCAA...AAACACAGCCAGAACCTGGACCTGTGTAAAGAACTTTCTGTGTTGTTCTAATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR GCA 90 bp ATAAATAAAGCCTTTATTCCAACAGTTGACCGCAGTACAGGGCACAGTTCAGATCTATTGGCCATCTGTTaGATCAGCTGGACAGCACGG +
Preference number: 4 (lower is better)
Translates to: INKAFIPTVDRSTGHSSDLLAIC*ISWTAR
Trigger: CCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAG...ATCTGAACTGTGCCCTGTACTGCGGTCAACTGTTGGAATAAAGGCTTTATTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp ATAAATAAAGCCTTTATTCCAACAGTTGACCGCAGTACAGGGCACAGTTCAGATATCTGTTGCATCAGCTaGACAGCACGGTCTGGGATC +
Preference number: 4 (lower is better)
Translates to: INKAFIPTVDRSTGHSSDICCIS*TARSGI
Trigger: GATCCCAGACCGTGCTGTCCAGCTGATGCAACAGAT...ATCTGAACTGTGCCCTGTACTGCGGTCAACTGTTGGAATAAAGGCTTTATTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp ATAAATAAAGCCTTTATTCCAACAGTTGACCGCAGTACAGGGCACAGTTCAGATGGGCACTTGGAAGGATaGAGCCATTGCTATTGGCCA +
Preference number: 4 (lower is better)
Translates to: INKAFIPTVDRSTGHSSDGHLEG*SHCYWP
Trigger: TGGCCAATAGCAATGGCTCCATCCTTCCAAGTGCCC...ATCTGAACTGTGCCCTGTACTGCGGTCAACTGTTGGAATAAAGGCTTTATTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TGTGAAGAGACAAAACCAGTAGCCACTGAGTCCAGTGTGCCTGTTTCTAAAGTTCTCCTCTGTTCCGTTTaGTATTTCTTCAGTGCAGCA +
Preference number: 4 (lower is better)
Translates to: CEETKPVATESSVPVSKVLLCSV*YFFSAA
Trigger: TGCTGCACTGAAGAAATACCAAACGGAACAGAGGAG...AACTTTAGAAACAGGCACACTGGACTCAGTGGCTACTGGTTTTGTCTCTTCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CCA 90 bp TGTGAAGAGACAAAACCAGTAGCCACTGAGTCCAGTGTGCCTGTTTCTAAAGTTCAGCACTTAGATACCTaGAGTCCAGTTCTACTTTCT +
Preference number: 4 (lower is better)
Translates to: CEETKPVATESSVPVSKVQHLDT*SPVLLS
Trigger: AGAAAGTAGAACTGGACTCCAGGTATCTAAGTGCTG...AACTTTAGAAACAGGCACACTGGACTCAGTGGCTACTGGTTTTGTCTCTTCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp CAGATGCATGCCCACCGCCGGCCAGGGGCAGCAGGCCCGCCCGCCACCCGGCAGCCCATGGCGATGAAGTaGCGGAGGCTGGGGTTGAAC +
Preference number: 5 (lower is better)
Translates to: QMHAHRRPGAAGPPATRQPMAMK*RRLGLN
Trigger: GTTCAACCCCAGCCTCCGCAACTTCATCGCCATGGG...CTGCCGGGTGGCGGGCGGGCCTGCTGCCCCTGGCCGGCGGTGGGCATGCATCTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp CCGGCAGGCCCCCACCCGGCAGTTAATGCTCAAGGCTGGGGACACCTGCTGGGGTTCGGCGTCACGCTCTaGCGCACGGGGAGTGTGTTG +
Preference number: 5 (lower is better)
Translates to: PAGPHPAVNAQGWGHLLGFGVTL*RTGSVL
Trigger: CAACACACTCCCCGTGCGCAAGAGCGTGACGCCGAA...CCCCAGCAGGTGTCCCCAGCCTTGAGCATTAACTGCCGGGTGGGGGCCTGCCGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGCGCGCACGGGGAGTGTGTaGGAGTACGAGTCGCTCAGC +
Preference number: 5 (lower is better)
Translates to: ATSPGTPGIQPRLGRCEARTGSV*EYESLS
Trigger: GCTGAGCGACTCGTACTCCAACACACTCCCCGTGCG...CGCCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp CCGGCAGGCCCCCACCCGGCAGTTAATGCTCAAGGCTGGGGACACCTGCTGGGGAACCAGCCCCGCATCTaGGTCTTCTCACTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: PAGPHPAVNAQGWGHLLGNQPRI*VFSLSP
Trigger: TGGGGAGAGTGAGAAGACCAAGATGCGGGGCTGGTT...CCCCAGCAGGTGTCCCCAGCCTTGAGCATTAACTGCCGGGTGGGGGCCTGCCGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS TCA 90 bp GACCCTGAGAGAAGGCAGGAACGGCCACGCTGTAGGGTCTCTGCTTaGATGTGCCGGCTGTCTGGGTGGGGAATGCCCGGGAGGACGTGC +
Preference number: 5 (lower is better)
Translates to: DPERRQERPRCRVSA*MCRLSGWGMPGRTC
Trigger: GCACGTCCTCCCGGGCATTCCCCACCCAGACAGCCGGCACATTCAAGCAGAGACCCTACAGCGTGGCCGTTCCTGCCTTCTCTCAGGGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp TCCATCACAGGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTGGGGTCGGCACAGGCTaGCTGCCACAGAGGCAGCTT +
Preference number: 5 (lower is better)
Translates to: SITGVVSFLRRLPSAQAPGVGTG*LPQRQL
Trigger: AAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCCC...AGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCCTGTGATGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp CTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGGCACTGGCAAGGGCTaGGCTCCAGGAATGGGATCT +
Preference number: 5 (lower is better)
Translates to: LLRQPPHQEHLGSSPGWAGTGKG*APGMGS
Trigger: AGATCCCATTCCTGGAGCCAAGCCCTTGCCAGTGCC...GGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp CTGGGCCGATGTGAGGCGAGGCTAGGGAGTGGGGCATTGTGGTCTTCTCTGGACGGGGGAGACAGGGATTaGGGCTGGGCAGCCTTTCGG +
Preference number: 5 (lower is better)
Translates to: LGRCEARLGSGALWSSLDGGDRD*GWAAFR
Trigger: CCGAAAGGCTGCCCAGCCCAAATCCCTGTCTCCCCC...GTCCAGAGAAGACCACAATGCCCCACTCCCTAGCCTCGCCTCACATCGGCCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGGGGTCGGCACAGGCTaGCTGCCACAGAGGCAGCTT +
Preference number: 5 (lower is better)
Translates to: GVVSFLRRLPSAQAPFLGGVGTG*LPQRQL
Trigger: AAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCCC...ACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp CCGGCAGGCCCCCACCCGGCAGTTAATGCTCAAGGCTGGGGACACCTGCTGGGGGGAAGGATGGAGCCATaGCTATTGGCCATCTGTTGC +
Preference number: 5 (lower is better)
Translates to: PAGPHPAVNAQGWGHLLGGRMEP*LLAICC
Trigger: GCAACAGATGGCCAATAGCAATGGCTCCATCCTTCC...CCCCAGCAGGTGTCCCCAGCCTTGAGCATTAACTGCCGGGTGGGGGCCTGCCGG
63% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp AGGCTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGGGGGGAGACAGGGATTaGGGCTGGGCAGCCTTTCGG +
Preference number: 5 (lower is better)
Translates to: RLAGFANHIRGASAASQGGGDRD*GWAAFR
Trigger: CCGAAAGGCTGCCCAGCCCAAATCCCTGTCTCCCCC...CCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAGCCT
63% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075180.12
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GGGATGTGCGTCGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAACGCTGCTTCGCACGGGGAGTGTGTaGGAGTACGAGTCGCTCAGC +
Preference number: 5 (lower is better)
Translates to: GMCVVNTTGLGQQVPTLLRTGSV*EYESLS
Trigger: GCTGAGCGACTCGTACTCCAACACACTCCCCGTGCG...AAGCAGCGTTGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACGACGCACATCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp CAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGAACCAGCCCCGCATCTaGGTCTTCTCACTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: QPPHQEHLGSSPGWADVRNQPRI*VFSLSP
Trigger: TGGGGAGAGTGAGAAGACCAAGATGCGGGGCTGGTT...CCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS GCA 90 bp AGCTGGACAGCACGGTCTGGGATCTTGTTGGGGTCGGCACAGGCTTaGTGCCACAGAGGCAGCTTCTGGGCCAGCAACTCCTTGCCCTTG +
Preference number: 5 (lower is better)
Translates to: SWTARSGILLGSAQA*CHRGSFWASNSLPL
Trigger: CAAGGGCAAGGAGTTGCTGGCCCAGAAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCCCAACAAGATCCCAGACCGTGCTGTCCAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 90 bp CGCTCTTGCGCACGGGGAGTGTGTTGGAGTACGAGTCGCTCAGCTTaGTTTGAGACTGCGGGGGAGACAGGGATTTGGGCTGGGCAGCCT +
Preference number: 5 (lower is better)
Translates to: RSCARGVCWSTSRSA*FETAGETGIWAGQP
Trigger: AGGCTGCCCAGCCCAAATCCCTGTCTCCCCCGCAGTCTCAAAGCAAGCTGAGCGACTCGTACTCCAACACACTCCCCGTGCGCAAGAGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 90 bp TCACACTGTGGACACCAGCGTGCCACTGCCACTGCTCACAGACCGTaGCCCGTAGTCATCCAGACCCTGAGAGAAGGCAGGAACGGCCAC +
Preference number: 5 (lower is better)
Translates to: SHCGHQRATATAHRP*PVVIQTLREGRNGH
Trigger: GTGGCCGTTCCTGCCTTCTCTCAGGGTCTGGATGACTACGGGGCACGGTCTGTGAGCAGTGGCAGTGGCACGCTGGTGTCCACAGTGTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
CDS CCA 90 bp ACGAGTCGCTCAGCTTGCTTTGAGACTGCGGGGGAGACAGGGATTTaGGCTGGGCAGCCTTTCGGTCAGCCCAGGGGTTGTAGTCCTCGC +
Preference number: 5 (lower is better)
Translates to: TSRSACFETAGETGI*AGQPFGQPRGCSPR
Trigger: GCGAGGACTACAACCCCTGGGCTGACCGAAAGGCTGCCCAGCCCAAATCCCTGTCTCCCCCGCAGTCTCAAAGCAAGCTGAGCGACTCGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GGGATGTGCGTCGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAACGCTGCTTCCCATGGCGATGAAGTaGCGGAGGCTGGGGTTGAAC +
Preference number: 5 (lower is better)
Translates to: GMCVVNTTGLGQQVPTLLPMAMK*RRLGLN
Trigger: GTTCAACCCCAGCCTCCGCAACTTCATCGCCATGGG...AAGCAGCGTTGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACGACGCACATCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp TCCACAGTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGGGGTCGGCACAGGCTaGCTGCCACAGAGGCAGCTT +
Preference number: 5 (lower is better)
Translates to: STVRIRGPCCPSAGPSVGGVGTG*LPQRQL
Trigger: AAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCCC...CCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAACTGTGGA
62% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGAGGGGGTCGGCACAGGCTaGCTGCCACAGAGGCAGCTT +
Preference number: 5 (lower is better)
Translates to: GNRLPSLQAGRMSSLCPEGVGTG*LPQRQL
Trigger: AAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCCC...CTCTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp TTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGGCACGGTCTGGGATCTaGTTGGGGTCGGCACAGGCT +
Preference number: 5 (lower is better)
Translates to: LGSEVPVAQVLAPLLGHRARSGI*LGSAQA
Trigger: AGCCTGTGCCGACCCCAACAAGATCCCAGACCGTGC...CCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTTTCGGCGTCACGCTCTaGCGCACGGGGAGTGTGTTG +
Preference number: 5 (lower is better)
Translates to: GVVSFLRRLPSAQAPFLGFGVTL*RTGSVL
Trigger: CAACACACTCCCCGTGCGCAAGAGCGTGACGCCGAA...ACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp CAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGGGAACCAGCCCCGCATCTaGGTCTTCTCACTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: QEAPKCPGPFSWCSPWKGNQPRI*VFSLSP
Trigger: TGGGGAGAGTGAGAAGACCAAGATGCGGGGCTGGTT...CCCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTGGGATCACCATCCAGGGCGTCCCCTTaGCTCCTCTGTTCCGTTTGG +
Preference number: 5 (lower is better)
Translates to: GAESSTMDPGGFQSLGSPSRASP*LLCSVW
Trigger: CCAAACGGAACAGAGGAGCAAAGGGGACGCCCTGGA...TGGTGATCCCAGACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GGGCATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGGTTCTTACTCCCTaGGCTCTTCTTGCGGAGCTT +
Preference number: 5 (lower is better)
Translates to: GHRPLEAATSPGTPGIQPRVLTP*ALLAEL
Trigger: AAGCTCCGCAAGAAGAGCCAAGGGAGTAAGAACCCT...GGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp CTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTCGGTCTGGGATCTTGTaGGGGTCGGCACAGGCTTGC +
Preference number: 5 (lower is better)
Translates to: LAGFANHIRGASAASQGLRSGIL*GSAQAC
Trigger: GCAAGCCTGTGCCGACCCCAACAAGATCCCAGACCG...AAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp CTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTTGCACGGTCTGGGATCTaGTTGGGGTCGGCACAGGCT +
Preference number: 5 (lower is better)
Translates to: LAGFANHIRGASAASQGLARSGI*LGSAQA
Trigger: AGCCTGTGCCGACCCCAACAAGATCCCAGACCGTGC...AAGCCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GGGCATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCATGACCAGGTTGGACTaGGAAGCTGACAGGGCACTT +
Preference number: 5 (lower is better)
Translates to: GHRPLEAATSPGTPGIQPMTRLD*EADRAL
Trigger: AAGTGCCCTGTCAGCTTCCAAGTCCAACCTGGTCAT...GGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GGGCATCGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCTCTGAGATGACCAGGTaGGACTTGGAAGCTGACAGG +
Preference number: 5 (lower is better)
Translates to: GHRPLEAATSPGTPGIQPSEMTR*DLEADR
Trigger: CCTGTCAGCTTCCAAGTCCAACCTGGTCATCTCAGA...GGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCGATGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp CGGCCTCTTGAGGCAGCCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGTCTGAGATGACCAGGTaGGACTTGGAAGCTGACAGG +
Preference number: 5 (lower is better)
Translates to: RPLEAATSPGTPGIQPRLSEMTR*DLEADR
Trigger: CCTGTCAGCTTCCAAGTCCAACCTGGTCATCTCAGA...CAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGGCTGCCTCAAGAGGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp TTCTCTGGACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTTCGGCGTCACGCTCTaGCGCACGGGGAGTGTGTTG +
Preference number: 5 (lower is better)
Translates to: FSGQEHALITLSWQVGTEFGVTL*RTGSVL
Trigger: CAACACACTCCCCGTGCGCAAGAGCGTGACGCCGAA...CTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCAGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCCTCTCCTTGTCTAGGAGGTaGCCTGTGCTGCTGCTCTTG +
Preference number: 5 (lower is better)
Translates to: DQRSLLPKCWPLCWGIGLSLSRR*PVLLLL
Trigger: CAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGGA...GAGGCCGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp CAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGGGGTCGCTCAGCTTGCTTaGAGACCCCACAAATGGTGC +
Preference number: 5 (lower is better)
Translates to: QEAPKCPGPFSWCSPWKGVAQLA*RPHKWC
Trigger: GCACCATTTGTGGGGTCTCAAAGCAAGCTGAGCGAC...CCCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000103021.10
CDS TCA 90 bp TCGCTGTCCGGGCCTGCGACGCCATTCATGACAGGTACATTCTCCTaGGCAGACATCCGCCCCACAAATGGTGCCAGCTCAGGTGGCACT +
Preference number: 5 (lower is better)
Translates to: SLSGPATPFMTGTFS*ADIRPTNGASSGGT
Trigger: AGTGCCACCTGAGCTGGCACCATTTGTGGGGCGGATGTCTGCTCAGGAGAATGTACCTGTCATGAATGGCGTCGCAGGCCCGGACAGCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS TCA 90 bp CCCAGGGGTTGTAGTCCTCGCTGTCCGGGCCTGCGACGCCATTCATaGCAGGTACATTCTCCTGAGCAGACATCCGCCCCACAAATGGTG +
Preference number: 5 (lower is better)
Translates to: PRGCSPRCPGLRRHS*QVHSPEQTSAPQMV
Trigger: CACCATTTGTGGGGCGGATGTCTGCTCAGGAGAATGTACCTGTCATGAATGGCGTCGCAGGCCCGGACAGCGAGGACTACAACCCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS TCA 90 bp TCAGCAGAGTGCTATTGTCACCGGCCGCGTGGGAGAAAATGGCCTTaGCCCGCATGCGGCCATTACGTTCTAGGCCAGCTGCCATGGAGC +
Preference number: 5 (lower is better)
Translates to: SAECYCHRPRGRKWP*PACGHYVLGQLPWS
Trigger: GCTCCATGGCAGCTGGCCTAGAACGTAATGGCCGCATGCGGGTCAAGGCCATTTTCTCCCACGCGGCCGGTGACAATAGCACTCTGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 90 bp AGCCTTTCGGTCAGCCCAGGGGTTGTAGTCCTCGCTGTCCGGGCCTaGGACGCCATTCATGACAGGTACATTCTCCTGAGCAGACATCCG +
Preference number: 5 (lower is better)
Translates to: SLSVSPGVVVLAVRA*DAIHDRYILLSRHP
Trigger: CGGATGTCTGCTCAGGAGAATGTACCTGTCATGAATGGCGTCGCAGGCCCGGACAGCGAGGACTACAACCCCTGGGCTGACCGAAAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp CCACCTCACCAGGAACACCTGGGATCCAGCCCAGGCTGGGCCGATGTGAGGCGAGCTCCTCTGTTCCGTTaGGTATTTCTTCAGTGCAGC +
Preference number: 5 (lower is better)
Translates to: PPHQEHLGSSPGWADVRRAPLFR*VFLQCS
Trigger: GCTGCACTGAAGAAATACCAAACGGAACAGAGGAGC...TCGCCTCACATCGGCCCAGCCTGGGCTGGATCCCAGGTGTTCCTGGTGAGGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp TCCACAGTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGTCCAGGGCGTCCCCTTaGCTCCTCTGTTCCGTTTGG +
Preference number: 5 (lower is better)
Translates to: STVRIRGPCCPSAGPSVGSRASP*LLCSVW
Trigger: CCAAACGGAACAGAGGAGCAAAGGGGACGCCCTGGA...CCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAACTGTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GGGATGTGCGTCGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAACGCTGCTTCTCCCTTGGCTCTTCTaGCGGAGCTTCTTCAGCTCA +
Preference number: 5 (lower is better)
Translates to: GMCVVNTTGLGQQVPTLLLPWLF*RSFFSS
Trigger: TGAGCTGAAGAAGCTCCGCAAGAAGAGCCAAGGGAG...AAGCAGCGTTGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACGACGCACATCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp TCCATCACAGGAGTGGTCAGCTTCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTCTCCCTTGGCTCTTCTaGCGGAGCTTCTTCAGCTCA +
Preference number: 5 (lower is better)
Translates to: SITGVVSFLRRLPSAQAPLPWLF*RSFFSS
Trigger: TGAGCTGAAGAAGCTCCGCAAGAAGAGCCAAGGGAG...AGGGGCCTGGGCACTTGGGAGCCTCCTGAGGAAGCTGACCACTCCTGTGATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp CAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGGGAGGGTTCTTACTCCCTaGGCTCTTCTTGCGGAGCTT +
Preference number: 5 (lower is better)
Translates to: QEAPKCPGPFSWCSPWKGRVLTP*ALLAEL
Trigger: AAGCTCCGCAAGAAGAGCCAAGGGAGTAAGAACCCT...CCCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp ATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGCGGTCTGGGATCTTGTaGGGGTCGGCACAGGCTTGC +
Preference number: 5 (lower is better)
Translates to: MGIGSLPCKPAECPLCVQRSGIL*GSAQAC
Trigger: GCAAGCCTGTGCCGACCCCAACAAGATCCCAGACCG...CTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp CAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAAGGGGATGACCAGGTTGGACTaGGAAGCTGACAGGGCACTT +
Preference number: 5 (lower is better)
Translates to: QEAPKCPGPFSWCSPWKGMTRLD*EADRAL
Trigger: AAGTGCCCTGTCAGCTTCCAAGTCCAACCTGGTCAT...CCCCTTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGATGCAGAGGCACTGGCAAGGGCTaGGCTCCAGGAATGGGATCT +
Preference number: 5 (lower is better)
Translates to: EHALITLSWQVGTECRCRGTGKG*APGMGS
Trigger: AGATCCCATTCCTGGAGCCAAGCCCTTGCCAGTGCC...TCTGCATCGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GCCTTGGGCTCCGCTGCCCAGAATTCAGTGTGTGAAGAGACAAAACCAGTAGCCGGGGGAGACAGGGATTaGGGCTGGGCAGCCTTTCGG +
Preference number: 5 (lower is better)
Translates to: ALGSAAQNSVCEETKPVAGGDRD*GWAAFR
Trigger: CCGAAAGGCTGCCCAGCCCAAATCCCTGTCTCCCCC...GGCTACTGGTTTTGTCTCTTCACACACTGAATTCTGGGCAGCGGAGCCCAAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075180.12
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp ATGAGCGCAGGGGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTCCTTGTCTAGGAGGTaGCCTGTGCTGCTGCTCTTG +
Preference number: 5 (lower is better)
Translates to: MSAGAQRAAPWTLGDFRVSLSRR*PVLLLL
Trigger: CAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGGA...GACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCCCCTGCGCTCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp CTGCTCTTGCCTCCAGCTCCCACCAGGGCACTGCATGAGGTAACGCCACCCTGTTCCTTGTCTAGGAGGTaGCCTGTGCTGCTGCTCTTG +
Preference number: 5 (lower is better)
Translates to: LLLPPAPTRALHEVTPPCSLSRR*PVLLLL
Trigger: CAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGGA...ACAGGGTGGCGTTACCTCATGCAGTGCCCTGGTGGGAGCTGGAGGCAAGAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS GCA 90 bp GGGGGAGGGCCAGGTCATCCTTGTCTAGGAGGTTGCCTGTGCTGCTaGTCTTGCCCTGCTGCAGGCTCATATGCAATCTGTCACTTCCGT +
Preference number: 5 (lower is better)
Translates to: GGGPGHPCLGGCLCC*SCPAAGSYAICHFR
Trigger: ACGGAAGTGACAGATTGCATATGAGCCTGCAGCAGGGCAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGGATGACCTGGCCCTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 90 bp TGGTTTCAGATGGACGTTGGCGAAGGGATTCCTGCTCACAGACCGTaGCCCGTAGTCATCCAGACCCTGAGAGAAGGCAGGAACGGCCAC +
Preference number: 5 (lower is better)
Translates to: WFQMDVGEGIPAHRP*PVVIQTLREGRNGH
Trigger: GTGGCCGTTCCTGCCTTCTCTCAGGGTCTGGATGACTACGGGGCACGGTCTGTGAGCAGGAATCCCTTCGCCAACGTCCATCTGAAACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026436.10
CDS CCA 90 bp GCCATTGCTATTGGCCATCTGTTGCATCAGCTGGACAGCACGGTCTaGGATCTTGTTGGGGTCGGCACAGGCTTGCTGCCACAGAGGCAG +
Preference number: 5 (lower is better)
Translates to: AIAIGHLLHQLDSTV*DLVGVGTGLLPQRQ
Trigger: CTGCCTCTGTGGCAGCAAGCCTGTGCCGACCCCAACAAGATCCCAGACCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAGCAATGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 90 bp CATAGCTGTTCTTCGGCGTCACGCTCTTGCGCACGGGGAGTGTGTTaGAGTACGAGTCGCTCAGCTTGCTTTGAGACTGCGGGGGAGACA +
Preference number: 5 (lower is better)
Translates to: HSCSSASRSCARGVC*STSRSACFETAGET
Trigger: TGTCTCCCCCGCAGTCTCAAAGCAAGCTGAGCGACTCGTACTCCAACACACTCCCCGTGCGCAAGAGCGTGACGCCGAAGAACAGCTATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 90 bp TCGCCCTCCTTGAAGCTCAGCAGAGTGCTATTGTCACCGGCCGCGTaGGAGAAAATGGCCTTGACCCGCATGCGGCCATTACGTTCTAGG +
Preference number: 5 (lower is better)
Translates to: SPSLKLSRVLLSPAA*EKMALTRMRPLRSR
Trigger: CCTAGAACGTAATGGCCGCATGCGGGTCAAGGCCATTTTCTCCCACGCGGCCGGTGACAATAGCACTCTGCTGAGCTTCAAGGAGGGCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GAGCGCAGGGGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTGGCTCCTCTGTTCCGTTaGGTATTTCTTCAGTGCAGC +
Preference number: 5 (lower is better)
Translates to: ERRGAESSTMDPGGFQSLAPLFR*VFLQCS
Trigger: GCTGCACTGAAGAAATACCAAACGGAACAGAGGAGC...CAGACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCCCCTGCGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp AGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCTCCAGGGCGTCCCCTTaGCTCCTCTGTTCCGTTTGG +
Preference number: 5 (lower is better)
Translates to: SMGIGSLPCKPAECPLCVSRASP*LLCSVW
Trigger: CCAAACGGAACAGAGGAGCAAAGGGGACGCCCTGGA...GACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp AGGCTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGCTCCCTTGGCTCTTCTaGCGGAGCTTCTTCAGCTCA +
Preference number: 5 (lower is better)
Translates to: RLAGFANHIRGASAASQGLPWLF*RSFFSS
Trigger: TGAGCTGAAGAAGCTCCGCAAGAAGAGCCAAGGGAG...CCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp ATGAGCGCAGGGGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCAGGGTTCTTACTCCCTaGGCTCTTCTTGCGGAGCTT +
Preference number: 5 (lower is better)
Translates to: MSAGAQRAAPWTLGDFRVRVLTP*ALLAEL
Trigger: AAGCTCCGCAAGAAGAGCCAAGGGAGTAAGAACCCT...GACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCCCCTGCGCTCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTACGTACACCGGAGTCCATGGGGGTCGGCACAGGCTaGCTGCCACAGAGGCAGCTT +
Preference number: 5 (lower is better)
Translates to: ARTLGVRCRITVRTPESMGVGTG*LPQRQL
Trigger: AAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCCC...CATGGACTCCGGTGTACGTACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GCCTTGGGCTCCGCTGCCCAGAATTCAGTGTGTGAAGAGACAAAACCAGTAGCCCGGTCTGGGATCTTGTaGGGGTCGGCACAGGCTTGC +
Preference number: 5 (lower is better)
Translates to: ALGSAAQNSVCEETKPVARSGIL*GSAQAC
Trigger: GCAAGCCTGTGCCGACCCCAACAAGATCCCAGACCG...GGCTACTGGTTTTGTCTCTTCACACACTGAATTCTGGGCAGCGGAGCCCAAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGCTTCTCCCGCACGGTCTGGGATCTaGTTGGGGTCGGCACAGGCT +
Preference number: 5 (lower is better)
Translates to: DTHKRRNLGGAGPEPASPARSGI*LGSAQA
Trigger: AGCCTGTGCCGACCCCAACAAGATCCCAGACCGTGC...GGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GATCACCCTCAGCTGGCAGGTGGGGACAGAGTGTCGATGCAGAGGAGCCCGTCAGGAAGGATGGAGCCATaGCTATTGGCCATCTGTTGC +
Preference number: 5 (lower is better)
Translates to: DHPQLAGGDRVSMQRSPSGRMEP*LLAICC
Trigger: GCAACAGATGGCCAATAGCAATGGCTCCATCCTTCC...TGACGGGCTCCTCTGCATCGACACTCTGTCCCCACCTGCCAGCTGAGGGTGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp CGTGAACACCACAGGGCTAGGGCAGCAGGTGCCAACGCTGCTTTGCCACTCAGCTCTGAGATGACCAGGTaGGACTTGGAAGCTGACAGG +
Preference number: 5 (lower is better)
Translates to: REHHRARAAGANAALPLSSEMTR*DLEADR
Trigger: CCTGTCAGCTTCCAAGTCCAACCTGGTCATCTCAGA...GCTGAGTGGCAAAGCAGCGTTGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp CAGGACCCTAAGTCCTGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGATTCGGCGTCACGCTCTaGCGCACGGGGAGTGTGTTG +
Preference number: 5 (lower is better)
Translates to: QDPKSCPVLEDARTLGVRFGVTL*RTGSVL
Trigger: CAACACACTCCCCGTGCGCAAGAGCGTGACGCCGAA...TCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACAGGACTTAGGGTCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTGGGATCACCACAGCTGCCATGGAGCTaGAACGTGGCAGTGTCTTGT +
Preference number: 5 (lower is better)
Translates to: GAESSTMDPGGFQSLGSPQLPWS*NVAVSC
Trigger: ACAAGACACTGCCACGTTCAAGCTCCATGGCAGCTG...TGGTGATCCCAGACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp TCCTCAGGAGGCTCCCAAGTGCCCAGGCCCCTTTTCTTGGTGCAGCCCTTGGAATCCTTGTCTAGGAGGTaGCCTGTGCTGCTGCTCTTG +
Preference number: 5 (lower is better)
Translates to: SSGGSQVPRPLFLVQPLESLSRR*PVLLLL
Trigger: CAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGGA...TTCCAAGGGCTGCACCAAGAAAAGGGGCCTGGGCACTTGGGAGCCTCCTGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS TCA 90 bp CGCACTGCTTTTCCACCAGGAAGCAGAACCTCCTGCGCTCCTCAGTaGGTGCTGTCTTGTAGCCGTCAGACACGTAGTTCTCCAGCTCGC +
Preference number: 5 (lower is better)
Translates to: RTAFPPGSRTSCAPQ*VLSCSRQTRSSPAR
Trigger: GCGAGCTGGAGAACTACGTGTCTGACGGCTACAAGACAGCACTCACTGAGGAGCGCAGGAGGTTCTGCTTCCTGGTGGAAAAGCAGTGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS TCA 90 bp CAGGTGGCACTGGCAAGGGCTTGGCTCCAGGAATGGGATCTGAGATaGCCAGGTTGGACTTGGAAGCTGACAGGGCACTTGGAAGGATGG +
Preference number: 5 (lower is better)
Translates to: QVALARAWLQEWDLR*PGWTWKLTGHLEGW
Trigger: CCATCCTTCCAAGTGCCCTGTCAGCTTCCAAGTCCAACCTGGTCATCTCAGATCCCATTCCTGGAGCCAAGCCCTTGCCAGTGCCACCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 90 bp CTGCTTTTCCACCAGGAAGCAGAACCTCCTGCGCTCCTCAGTGAGTaGTGTCTTGTAGCCGTCAGACACGTAGTTCTCCAGCTCGCCCTG +
Preference number: 5 (lower is better)
Translates to: LLFHQEAEPPALLSE*CLVAVRHVVLQLAL
Trigger: CAGGGCGAGCTGGAGAACTACGTGTCTGACGGCTACAAGACAGCACTCACTGAGGAGCGCAGGAGGTTCTGCTTCCTGGTGGAAAAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 90 bp GGGCCAGCAACTCCTTGCCCTTGGAATGGTAAGCAGCAGAGTTCTTaGCCACAGCGCACTGCTTTTCCACCAGGAAGCAGAACCTCCTGC +
Preference number: 5 (lower is better)
Translates to: GPATPCPWNGKQQSS*PQRTAFPPGSRTSC
Trigger: GCAGGAGGTTCTGCTTCCTGGTGGAAAAGCAGTGCGCTGTGGCCAAGAACTCTGCTGCTTACCATTCCAAGGGCAAGGAGTTGCTGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp TCCACAGTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGCTCCCTTGGCTCTTCTaGCGGAGCTTCTTCAGCTCA +
Preference number: 5 (lower is better)
Translates to: STVRIRGPCCPSAGPSVGLPWLF*RSFFSS
Trigger: TGAGCTGAAGAAGCTCCGCAAGAAGAGCCAAGGGAG...CCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAACTGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp AGGCTTGCTGGGTTTGCTAACCACATCAGAGGCGCGTCCGCAGCTTCCCAAGGGAGCTCGCCCTGCTTATaGCTGATGGCATCGATGTAC +
Preference number: 5 (lower is better)
Translates to: RLAGFANHIRGASAASQGSSPCL*LMASMY
Trigger: GTACATCGATGCCATCAGCAATAAGCAGGGCGAGCT...CCCTTGGGAAGCTGCGGACGCGCCTCTGATGTGGTTAGCAAACCCAGCAAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GGCGCAGAGAGCAGCACCATGGACCCTGGGGGATTTCAGAGTCTGGGATCACCAGGAAGGATGGAGCCATaGCTATTGGCCATCTGTTGC +
Preference number: 5 (lower is better)
Translates to: GAESSTMDPGGFQSLGSPGRMEP*LLAICC
Trigger: GCAACAGATGGCCAATAGCAATGGCTCCATCCTTCC...TGGTGATCCCAGACTCTGAAATCCCCCAGGGTCCATGGTGCTGCTCTCTGCGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGCTTCTCCCGGCACTGGCAAGGGCTaGGCTCCAGGAATGGGATCT +
Preference number: 5 (lower is better)
Translates to: DTHKRRNLGGAGPEPASPGTGKG*APGMGS
Trigger: AGATCCCATTCCTGGAGCCAAGCCCTTGCCAGTGCC...GGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GCCTTGGGCTCCGCTGCCCAGAATTCAGTGTGTGAAGAGACAAAACCAGTAGCCGGCACTGGCAAGGGCTaGGCTCCAGGAATGGGATCT +
Preference number: 5 (lower is better)
Translates to: ALGSAAQNSVCEETKPVAGTGKG*APGMGS
Trigger: AGATCCCATTCCTGGAGCCAAGCCCTTGCCAGTGCC...GGCTACTGGTTTTGTCTCTTCACACACTGAATTCTGGGCAGCGGAGCCCAAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp TTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTGGGGGAGACAGGGATTaGGGCTGGGCAGCCTTTCGG +
Preference number: 5 (lower is better)
Translates to: LKVSMGIGSLPCKPAECPGGDRD*GWAAFR
Trigger: CCGAAAGGCTGCCCAGCCCAAATCCCTGTCTCCCCC...AGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp AATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCCAGAGGCTAACCAGCCCCGCATCTaGGTCTTCTCACTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: NRLPSLQAGRMSSLCPEANQPRI*VFSLSP
Trigger: TGGGGAGAGTGAGAAGACCAAGATGCGGGGCTGGTT...AGCCTCTGGACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp CGAGGTTCCACAGTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGGTTTCAGATGGACGTaGGCGAAGGGATTCCTGCTC +
Preference number: 5 (lower is better)
Translates to: RGSTVRIRGPCCPSAGPSGFRWT*AKGFLL
Trigger: GAGCAGGAATCCCTTCGCCAACGTCCATCTGAAACC...AGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAACTGTGGAACCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026436.10
CDS GCA 90 bp GACAGGGCACTTGGAAGGATGGAGCCATTGCTATTGGCCATCTGTTaGATCAGCTGGACAGCACGGTCTGGGATCTTGTTGGGGTCGGCA +
Preference number: 5 (lower is better)
Translates to: DRALGRMEPLLLAIC*ISWTARSGILLGSA
Trigger: TGCCGACCCCAACAAGATCCCAGACCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAGCAATGGCTCCATCCTTCCAAGTGCCCTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 90 bp GGGCCAGGTCATCCTTGTCTAGGAGGTTGCCTGTGCTGCTGCTCTTaGCCTGCTGCAGGCTCATATGCAATCTGTCACTTCCGTCACTGT +
Preference number: 5 (lower is better)
Translates to: GPGHPCLGGCLCCCS*PAAGSYAICHFRHC
Trigger: ACAGTGACGGAAGTGACAGATTGCATATGAGCCTGCAGCAGGGCAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGGATGACCTGGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 90 bp CTTGGAAGGATGGAGCCATTGCTATTGGCCATCTGTTGCATCAGCTaGACAGCACGGTCTGGGATCTTGTTGGGGTCGGCACAGGCTTGC +
Preference number: 5 (lower is better)
Translates to: LGRMEPLLLAICCIS*TARSGILLGSAQAC
Trigger: GCAAGCCTGTGCCGACCCCAACAAGATCCCAGACCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAGCAATGGCTCCATCCTTCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 90 bp TGTGTTGGAGTACGAGTCGCTCAGCTTGCTTTGAGACCCCACAAATaGTGCCAGCTCAGGTGGCACTGGCAAGGGCTTGGCTCCAGGAAT +
Preference number: 5 (lower is better)
Translates to: CVGVRVAQLALRPHK*CQLRWHWQGLGSRN
Trigger: ATTCCTGGAGCCAAGCCCTTGCCAGTGCCACCTGAGCTGGCACCATTTGTGGGGTCTCAAAGCAAGCTGAGCGACTCGTACTCCAACACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103021.10
CDS CCA 90 bp CATAGCTGTTCTTCGGCGTCACGCTCTTGCGCACGGGGAGTGTGTTaGAGTACGAGTCGCTCAGCTTGCTTTGAGACCCCACAAATGGTG +
Preference number: 5 (lower is better)
Translates to: HSCSSASRSCARGVC*STSRSACFETPQMV
Trigger: CACCATTTGTGGGGTCTCAAAGCAAGCTGAGCGACTCGTACTCCAACACACTCCCCGTGCGCAAGAGCGTGACGCCGAAGAACAGCTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103021.10
CDS-3UTR CAA 90 bp GTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGCATCGGCTCCTCTGTTCCGTTaGGTATTTCTTCAGTGCAGC +
Preference number: 5 (lower is better)
Translates to: VRIRGPCCPSAGPSVGASAPLFR*VFLQCS
Trigger: GCTGCACTGAAGAAATACCAAACGGAACAGAGGAGC...CGATGCCCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp TCCACAGTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGAGCTCGCCCTGCTTATaGCTGATGGCATCGATGTAC +
Preference number: 5 (lower is better)
Translates to: STVRIRGPCCPSAGPSVGSSPCL*LMASMY
Trigger: GTACATCGATGCCATCAGCAATAAGCAGGGCGAGCT...CCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAACTGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp CGATGTGAGGCGAGGCTAGGGAGTGGGGCATTGTGGTCTTCTCTGGACAGGAACAGCTCGCCCTGCTTATaGCTGATGGCATCGATGTAC +
Preference number: 5 (lower is better)
Translates to: RCEARLGSGALWSSLDRNSSPCL*LMASMY
Trigger: GTACATCGATGCCATCAGCAATAAGCAGGGCGAGCT...GTTCCTGTCCAGAGAAGACCACAATGCCCCACTCCCTAGCCTCGCCTCACATCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp TTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCCGGTCTGGGATCTTGTaGGGGTCGGCACAGGCTTGC +
Preference number: 5 (lower is better)
Translates to: FKSQHGNRLPSLQAGRMSRSGIL*GSAQAC
Trigger: GCAAGCCTGTGCCGACCCCAACAAGATCCCAGACCG...GGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GGGTGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACGCACGGTCTGGGATCTaGTTGGGGTCGGCACAGGCT +
Preference number: 5 (lower is better)
Translates to: GWERKQPKNKPTRAEEGNARSGI*LGSAQA
Trigger: AGCCTGTGCCGACCCCAACAAGATCCCAGACCGTGC...GTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp TCCACAGTTAGGATCAGAGGTCCCTGTTGCCCAAGTGCTGGCCCCTCTGTTGGGGGAAGGATGGAGCCATaGCTATTGGCCATCTGTTGC +
Preference number: 5 (lower is better)
Translates to: STVRIRGPCCPSAGPSVGGRMEP*LLAICC
Trigger: GCAACAGATGGCCAATAGCAATGGCTCCATCCTTCC...CCCAACAGAGGGGCCAGCACTTGGGCAACAGGGACCTCTGATCCTAACTGTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp TTCTCTGGACAGGAACATGCCCTGATCACCCTCAGCTGGCAGGTGGGGACAGAGATGACCAGGTTGGACTaGGAAGCTGACAGGGCACTT +
Preference number: 5 (lower is better)
Translates to: FSGQEHALITLSWQVGTEMTRLD*EADRAL
Trigger: AAGTGCCCTGTCAGCTTCCAAGTCCAACCTGGTCAT...CTCTGTCCCCACCTGCCAGCTGAGGGTGATCAGGGCATGTTCCTGTCCAGAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GGGTGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACCGCACGGGGAGTGTGTaGGAGTACGAGTCGCTCAGC +
Preference number: 5 (lower is better)
Translates to: GWERKQPKNKPTRAEEGNRTGSV*EYESLS
Trigger: GCTGAGCGACTCGTACTCCAACACACTCCCCGTGCG...GTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp AGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGCAGCTGCCATGGAGCTaGAACGTGGCAGTGTCTTGT +
Preference number: 5 (lower is better)
Translates to: SQHGNRLPSLQAGRMSSLQLPWS*NVAVSC
Trigger: ACAAGACACTGCCACGTTCAAGCTCCATGGCAGCTG...CAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS TCA 90 bp TTCTTACTCCCTTGGCTCTTCTTGCGGAGCTTCTTCAGCTCAGCCTaGCACTTGTCCAGGGCGTCCCCTTTGCTCCTCTGTTCCGTTTGG +
Preference number: 5 (lower is better)
Translates to: FLLPWLFLRSFFSSA*HLSRASPLLLCSVW
Trigger: CCAAACGGAACAGAGGAGCAAAGGGGACGCCCTGGACAAGTGTCAGGCTGAGCTGAAGAAGCTCCGCAAGAAGAGCCAAGGGAGTAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 90 bp TCTTGTTCTCAGTGGTGGCATAGCTGTTCTTCGGCGTCACGCTCTTaGGCACGGGGAGTGTGTTGGAGTACGAGTCGCTCAGCTTGCTTT +
Preference number: 5 (lower is better)
Translates to: SCSQWWHSCSSASRS*ARGVCWSTSRSACF
Trigger: AAAGCAAGCTGAGCGACTCGTACTCCAACACACTCCCCGTGCGCAAGAGCGTGACGCCGAAGAACAGCTATGCCACCACTGAGAACAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 90 bp TCATCCTTGTCTAGGAGGTTGCCTGTGCTGCTGCTCTTGCCCTGCTaGAGGCTCATATGCAATCTGTCACTTCCGTCACTGTCCAGGACC +
Preference number: 5 (lower is better)
Translates to: SSLSRRLPVLLLLPC*RLICNLSLPSLSRT
Trigger: GGTCCTGGACAGTGACGGAAGTGACAGATTGCATATGAGCCTGCAGCAGGGCAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGGATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 90 bp AGGTCATCCTTGTCTAGGAGGTTGCCTGTGCTGCTGCTCTTGCCCTaGTGCAGGCTCATATGCAATCTGTCACTTCCGTCACTGTCCAGG +
Preference number: 5 (lower is better)
Translates to: RSSLSRRLPVLLLLP*CRLICNLSLPSLSR
Trigger: CCTGGACAGTGACGGAAGTGACAGATTGCATATGAGCCTGCAGCAGGGCAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGGATGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 90 bp CATTGGTCACTGTTGGTTTCAGATGGACGTTGGCGAAGGGATTCCTaGTCACAGACCGTGCCCCGTAGTCATCCAGACCCTGAGAGAAGG +
Preference number: 5 (lower is better)
Translates to: HWSLLVSDGRWRRDS*SQTVPRSHPDPERR
Trigger: CCTTCTCTCAGGGTCTGGATGACTACGGGGCACGGTCTGTGAGCAGGAATCCCTTCGCCAACGTCCATCTGAAACCAACAGTGACCAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026436.10
CDS CCA 90 bp GAGGGGCTGATCTGTCATTGGTCACTGTTGGTTTCAGATGGACGTTaGCGAAGGGATTCCTGCTCACAGACCGTGCCCCGTAGTCATCCA +
Preference number: 5 (lower is better)
Translates to: EGLICHWSLLVSDGR*RRDSCSQTVPRSHP
Trigger: TGGATGACTACGGGGCACGGTCTGTGAGCAGGAATCCCTTCGCCAACGTCCATCTGAAACCAACAGTGACCAATGACAGATCAGCCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026436.10
CDS-3UTR CAA 90 bp TTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCCCATGGCGATGAAGTaGCGGAGGCTGGGGTTGAAC +
Preference number: 5 (lower is better)
Translates to: LKVSMGIGSLPCKPAECPPMAMK*RRLGLN
Trigger: GTTCAACCCCAGCCTCCGCAACTTCATCGCCATGGG...AGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GCGTCCTCACACTGTGGACACCAGCGTGCCACTGCCACTGTGGAACAAAGCACAGCTCCTCTGTTCCGTTaGGTATTTCTTCAGTGCAGC +
Preference number: 5 (lower is better)
Translates to: ASSHCGHQRATATVEQSTAPLFR*VFLQCS
Trigger: GCTGCACTGAAGAAATACCAAACGGAACAGAGGAGC...TGTGCTTTGTTCCACAGTGGCAGTGGCACGCTGGTGTCCACAGTGTGAGGACGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp AGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCTCTCTGTGTCAGGGTTCTTACTCCCTaGGCTCTTCTTGCGGAGCTT +
Preference number: 5 (lower is better)
Translates to: SMGIGSLPCKPAECPLCVRVLTP*ALLAEL
Trigger: AAGCTCCGCAAGAAGAGCCAAGGGAGTAAGAACCCT...GACACAGAGAGGACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp CTTAGAAAAGGGATGTGCGTCGTGAACACCACAGGGCTAGGGCAGCAGGTGCCATCTGAGATGACCAGGTaGGACTTGGAAGCTGACAGG +
Preference number: 5 (lower is better)
Translates to: LRKGMCVVNTTGLGQQVPSEMTR*DLEADR
Trigger: CCTGTCAGCTTCCAAGTCCAACCTGGTCATCTCAGA...TGGCACCTGCTGCCCTAGCCCTGTGGTGTTCACGACGCACATCCCTTTTCTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GGGTGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACGGCACTGGCAAGGGCTaGGCTCCAGGAATGGGATCT +
Preference number: 5 (lower is better)
Translates to: GWERKQPKNKPTRAEEGNGTGKG*APGMGS
Trigger: AGATCCCATTCCTGGAGCCAAGCCCTTGCCAGTGCC...GTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GCTGATCTGTCATTGGTCACTGTTGGTTTCAGATGGACGTTGGCGAAGGGATTCTTCGGCGTCACGCTCTaGCGCACGGGGAGTGTGTTG +
Preference number: 5 (lower is better)
Translates to: ADLSLVTVGFRWTLAKGFFGVTL*RTGSVL
Trigger: CAACACACTCCCCGTGCGCAAGAGCGTGACGCCGAA...GAATCCCTTCGCCAACGTCCATCTGAAACCAACAGTGACCAATGACAGATCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp AGTTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAATGTCCCATGGCGATGAAGTaGCGGAGGCTGGGGTTGAAC +
Preference number: 5 (lower is better)
Translates to: SLKVSMGIGSLPCKPAECPMAMK*RRLGLN
Trigger: GTTCAACCCCAGCCTCCGCAACTTCATCGCCATGGG...ACATTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGCTTCTCCCAGGGTTCTTACTCCCTaGGCTCTTCTTGCGGAGCTT +
Preference number: 5 (lower is better)
Translates to: DTHKRRNLGGAGPEPASPRVLTP*ALLAEL
Trigger: AAGCTCCGCAAGAAGAGCCAAGGGAGTAAGAACCCT...GGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp AAAAGTTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAAGCACGGTCTGGGATCTaGTTGGGGTCGGCACAGGCT +
Preference number: 5 (lower is better)
Translates to: KSLKVSMGIGSLPCKPAEARSGI*LGSAQA
Trigger: AGCCTGTGCCGACCCCAACAAGATCCCAGACCGTGC...TTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAACTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGCTTCTCCCGGAAGGATGGAGCCATaGCTATTGGCCATCTGTTGC +
Preference number: 5 (lower is better)
Translates to: DTHKRRNLGGAGPEPASPGRMEP*LLAICC
Trigger: GCAACAGATGGCCAATAGCAATGGCTCCATCCTTCC...GGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GCCTTGGGCTCCGCTGCCCAGAATTCAGTGTGTGAAGAGACAAAACCAGTAGCCATGACCAGGTTGGACTaGGAAGCTGACAGGGCACTT +
Preference number: 5 (lower is better)
Translates to: ALGSAAQNSVCEETKPVAMTRLD*EADRAL
Trigger: AAGTGCCCTGTCAGCTTCCAAGTCCAACCTGGTCAT...GGCTACTGGTTTTGTCTCTTCACACACTGAATTCTGGGCAGCGGAGCCCAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp AAAAAGTTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGACGCACGGGGAGTGTGTaGGAGTACGAGTCGCTCAGC +
Preference number: 5 (lower is better)
Translates to: KKFKSQHGNRLPSLQAGRRTGSV*EYESLS
Trigger: GCTGAGCGACTCGTACTCCAACACACTCCCCGTGCG...TCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAACTTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp CGATGTGAGGCGAGGCTAGGGAGTGGGGCATTGTGGTCTTCTCTGGACAGGAACTGTCATTGGTCACTGTaGGTTTCAGATGGACGTTGG +
Preference number: 5 (lower is better)
Translates to: RCEARLGSGALWSSLDRNCHWSL*VSDGRW
Trigger: CCAACGTCCATCTGAAACCAACAGTGACCAATGACA...GTTCCTGTCCAGAGAAGACCACAATGCCCCACTCCCTAGCCTCGCCTCACATCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026436.10
CDS GCA 90 bp CAGAGCATCGAAATAGCCTTTGGCAGCGAAGGTGACACCTGCCAGTaGTTTCTCATAGTTCTTGCCCATGGCGATGAAGTTGCGGAGGCT +
Preference number: 5 (lower is better)
Translates to: QSIEIAFGSEGDTCQ*FLIVLAHGDEVAEA
Trigger: AGCCTCCGCAACTTCATCGCCATGGGCAAGAACTATGAGAAAGCACTGGCAGGTGTCACCTTCGCTGCCAAAGGCTATTTCGATGCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp GACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTGCTTCTCCCGCTCCTCTGTTCCGTTaGGTATTTCTTCAGTGCAGC +
Preference number: 5 (lower is better)
Translates to: DTHKRRNLGGAGPEPASPAPLFR*VFLQCS
Trigger: GCTGCACTGAAGAAATACCAAACGGAACAGAGGAGC...GGGAGAAGCAGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS TCA 90 bp GAGTCCAGTTCTACTTTCTGCTCCAGCTGCGTGAGCAGCTCATTGTaGAAAGACTTCAGCGTCTCTTCCAACTGGTTCTGGATCTGCCGG +
Preference number: 5 (lower is better)
Translates to: ESSSTFCSSCVSSSL*KDFSVSSNWFWICR
Trigger: CCGGCAGATCCAGAACCAGTTGGAAGAGACGCTGAAGTCTTTTCACAATGAGCTGCTCACGCAGCTGGAGCAGAAAGTAGAACTGGACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 90 bp GGAGCTTCTTCAGCTCAGCCTGACACTTGTCCAGGGCGTCCCCTTTaGTCCTCTGTTCCGTTTGGTATTTCTTCAGTGCAGCACTTAGAT +
Preference number: 5 (lower is better)
Translates to: GASSAQPDTCPGRPL*SSVPFGISSVQHLD
Trigger: ATCTAAGTGCTGCACTGAAGAAATACCAAACGGAACAGAGGAGCAAAGGGGACGCCCTGGACAAGTGTCAGGCTGAGCTGAAGAAGCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp TGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACCGGATGACCAGGTTGGACTaGGAAGCTGACAGGGCACTT +
Preference number: 5 (lower is better)
Translates to: WERKQPKNKPTRAEEGNRMTRLD*EADRAL
Trigger: AAGTGCCCTGTCAGCTTCCAAGTCCAACCTGGTCAT...CCGGTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp GGTGGGAAAGAAAACAACCCAAGAACAAACCAACGAGAGCTGAGGAGGGGAACCTCTGAGATGACCAGGTaGGACTTGGAAGCTGACAGG +
Preference number: 5 (lower is better)
Translates to: GGKENNPRTNQRELRRGTSEMTR*DLEADR
Trigger: CCTGTCAGCTTCCAAGTCCAACCTGGTCATCTCAGA...GGTTCCCCTCCTCAGCTCTCGTTGGTTTGTTCTTGGGTTGTTTTCTTTCCCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS TCA 90 bp TTGCTGATGGCATCGATGTACTGCAGCTCCTTGTCTGAGTACTTCTaGGGGTTCTTACTCCCTTGGCTCTTCTTGCGGAGCTTCTTCAGC +
Preference number: 5 (lower is better)
Translates to: LLMASMYCSSLSEYF*GFLLPWLFLRSFFS
Trigger: GCTGAAGAAGCTCCGCAAGAAGAGCCAAGGGAGTAAGAACCCTCAGAAGTACTCAGACAAGGAGCTGCAGTACATCGATGCCATCAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp TTAAATATAAAACAGGATCTGTCTGTGTCTGAGCTGCTGCTGCTGCTGTCAGACCCCATGGCGATGAAGTaGCGGAGGCTGGGGTTGAAC +
Preference number: 5 (lower is better)
Translates to: LNIKQDLSVSELLLLLSDPMAMK*RRLGLN
Trigger: GTTCAACCCCAGCCTCCGCAACTTCATCGCCATGGG...GTCTGACAGCAGCAGCAGCAGCTCAGACACAGACAGATCCTGTTTTATATTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp AAAAGTTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGAACTCCCTTGGCTCTTCTaGCGGAGCTTCTTCAGCTCA +
Preference number: 5 (lower is better)
Translates to: KSLKVSMGIGSLPCKPAELPWLF*RSFFSS
Trigger: TGAGCTGAAGAAGCTCCGCAAGAAGAGCCAAGGGAG...TTCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAACTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp AGTTACCAAGACACACACAAGAGGAGAAACTTAGGAGGAGCTGGACCAGAGCCTAGCTCGCCCTGCTTATaGCTGATGGCATCGATGTAC +
Preference number: 5 (lower is better)
Translates to: SYQDTHKRRNLGGAGPEPSSPCL*LMASMY
Trigger: GTACATCGATGCCATCAGCAATAAGCAGGGCGAGCT...AGGCTCTGGTCCAGCTCCTCCTAAGTTTCTCCTCTTGTGTGTGTCTTGGTAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp TGTCCTGTTCTAGAAGACGCCAGAACTCTGGGGGTCAGATGCAGAATAACAGTACAGCTGCCATGGAGCTaGAACGTGGCAGTGTCTTGT +
Preference number: 5 (lower is better)
Translates to: CPVLEDARTLGVRCRITVQLPWS*NVAVSC
Trigger: ACAAGACACTGCCACGTTCAAGCTCCATGGCAGCTG...TACTGTTATTCTGCATCTGACCCCCAGAGTTCTGGCGTCTTCTAGAACAGGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp AAAAAGTTTAAAAGTCAGCATGGGAATAGGCTCCCTTCCCTGCAAGCCGGCAGATCCTTGTCTAGGAGGTaGCCTGTGCTGCTGCTCTTG +
Preference number: 5 (lower is better)
Translates to: KKFKSQHGNRLPSLQAGRSLSRR*PVLLLL
Trigger: CAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGGA...TCTGCCGGCTTGCAGGGAAGGGAGCCTATTCCCATGCTGACTTTTAAACTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026436.10
ENSMUST00000106233.2
CDS TCA 90 bp CACTTAGATACCTGGAGTCCAGTTCTACTTTCTGCTCCAGCTGCGTaGGCAGCTCATTGTGAAAAGACTTCAGCGTCTCTTCCAACTGGT +
Preference number: 5 (lower is better)
Translates to: HLDTWSPVLLSAPAA*AAHCEKTSASLPTG
Trigger: ACCAGTTGGAAGAGACGCTGAAGTCTTTTCACAATGAGCTGCTCACGCAGCTGGAGCAGAAAGTAGAACTGGACTCCAGGTATCTAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS-3UTR CAA 90 bp TTGCTGTTTTGTGTCTACATTCATCCATTGCACATGGAATCCCCTGGATTTGAATCCAGGGCGTCCCCTTaGCTCCTCTGTTCCGTTTGG +
Preference number: 5 (lower is better)
Translates to: LLFCVYIHPLHMESPGFESRASP*LLCSVW
Trigger: CCAAACGGAACAGAGGAGCAAAGGGGACGCCCTGGA...TTCAAATCCAGGGGATTCCATGTGCAATGGATGAATGTAGACACAAAACAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp ATAAATAAAGCCTTTATTCCAACAGTTGACCGCAGTACAGGGCACAGTTCAGATTCCAGGGCGTCCCCTTaGCTCCTCTGTTCCGTTTGG +
Preference number: 5 (lower is better)
Translates to: INKAFIPTVDRSTGHSSDSRASP*LLCSVW
Trigger: CCAAACGGAACAGAGGAGCAAAGGGGACGCCCTGGA...ATCTGAACTGTGCCCTGTACTGCGGTCAACTGTTGGAATAAAGGCTTTATTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp AAATTAGAACAACACAGAAAGTTCTTTACACAGGTCCAGGTTCTGGCTGTGTTTCGCACGGGGAGTGTGTaGGAGTACGAGTCGCTCAGC +
Preference number: 5 (lower is better)
Translates to: KLEQHRKFFTQVQVLAVFRTGSV*EYESLS
Trigger: GCTGAGCGACTCGTACTCCAACACACTCCCCGTGCG...AAACACAGCCAGAACCTGGACCTGTGTAAAGAACTTTCTGTGTTGTTCTAATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp AAATTAGAACAACACAGAAAGTTCTTTACACAGGTCCAGGTTCTGGCTGTGTTTCAGCTGCCATGGAGCTaGAACGTGGCAGTGTCTTGT +
Preference number: 5 (lower is better)
Translates to: KLEQHRKFFTQVQVLAVFQLPWS*NVAVSC
Trigger: ACAAGACACTGCCACGTTCAAGCTCCATGGCAGCTG...AAACACAGCCAGAACCTGGACCTGTGTAAAGAACTTTCTGTGTTGTTCTAATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS-3UTR CAA 90 bp AAATTAGAACAACACAGAAAGTTCTTTACACAGGTCCAGGTTCTGGCTGTGTTTAGCTCGCCCTGCTTATaGCTGATGGCATCGATGTAC +
Preference number: 5 (lower is better)
Translates to: KLEQHRKFFTQVQVLAVFSSPCL*LMASMY
Trigger: GTACATCGATGCCATCAGCAATAAGCAGGGCGAGCT...AAACACAGCCAGAACCTGGACCTGTGTAAAGAACTTTCTGTGTTGTTCTAATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
CDS TCA 72 bp AGAAGGCAGGAACGGCCACGCTGTAGGGTCTCTGCTTaGATGTGCCGGCTGTCTGGGTGGGGAATGCCCGGG +
Preference number: 6 (lower is better)
Translates to: RRQERPRCRVSA*MCRLSGWGMPG
Trigger: CCCGGGCATTCCCCACCCAGACAGCCGGCACATTCAAGCAGAGACCCTACAGCGTGGCCGTTCCTGCCTTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp GCACGGTCTGGGATCTTGTTGGGGTCGGCACAGGCTTaGTGCCACAGAGGCAGCTTCTGGGCCAGCAACTCC +
Preference number: 6 (lower is better)
Translates to: ARSGILLGSAQA*CHRGSFWASNS
Trigger: GGAGTTGCTGGCCCAGAAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCCCAACAAGATCCCAGACCGTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp GGACACCAGCGTGCCACTGCCACTGCTCACAGACCGTaGCCCGTAGTCATCCAGACCCTGAGAGAAGGCAGG +
Preference number: 6 (lower is better)
Translates to: GHQRATATAHRP*PVVIQTLREGR
Trigger: CCTGCCTTCTCTCAGGGTCTGGATGACTACGGGGCACGGTCTGTGAGCAGTGGCAGTGGCACGCTGGTGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075180.12
ENSMUST00000103021.10
CDS CAA 90 bp CAGCTGGACAGCACGGTCTGGGATCTTGTTGGGGTCGGCACAGGCTaGCTGCCACAGAGGCAGCTTCTGGGCCAGCAACTCCTTGCCCTT +
Preference number: 6 (lower is better)
Translates to: QLDSTVWDLVGVGTG*LPQRQLLGQQLLAL
Trigger: AAGGGCAAGGAGTTGCTGGCCCAGAAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCCCAACAAGATCCCAGACCGTGCTGTCCAGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp TCTGGCCACTTCGACATCCGCGCTGCTCACAGACCGTaGCCCGTAGTCATCCAGACCCTGAGAGAAGGCAGG +
Preference number: 6 (lower is better)
Translates to: SGHFDIRAAHRP*PVVIQTLREGR
Trigger: CCTGCCTTCTCTCAGGGTCTGGATGACTACGGGGCACGGTCTGTGAGCAGCGCGGATGTCGAAGTGGCCAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106233.2
CDS CAA 72 bp AGCACGGTCTGGGATCTTGTTGGGGTCGGCACAGGCTaGCTGCCACAGAGGCAGCTTCTGGGCCAGCAACTC +
Preference number: 6 (lower is better)
Translates to: STVWDLVGVGTG*LPQRQLLGQQL
Trigger: GAGTTGCTGGCCCAGAAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCCCAACAAGATCCCAGACCGTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CAA 90 bp CTTGCGCACGGGGAGTGTGTTGGAGTACGAGTCGCTCAGCTTGCTTaGAGACTGCGGGGGAGACAGGGATTTGGGCTGGGCAGCCTTTCG +
Preference number: 6 (lower is better)
Translates to: LAHGECVGVRVAQLA*RLRGRQGFGLGSLS
Trigger: CGAAAGGCTGCCCAGCCCAAATCCCTGTCTCCCCCGCAGTCTCAAAGCAAGCTGAGCGACTCGTACTCCAACACACTCCCCGTGCGCAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp GTCAGCCCAGGGGTTGTAGTCCTCGCTGTCCGGGCCTaGGACGCCATTCATGACAGGTACATTCTCCTGAGC +
Preference number: 6 (lower is better)
Translates to: VSPGVVVLAVRA*DAIHDRYILLS
Trigger: GCTCAGGAGAATGTACCTGTCATGAATGGCGTCGCAGGCCCGGACAGCGAGGACTACAACCCCTGGGCTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp CGAGTCGCTCAGCTTGCTTTGAGACCCCACAAATGGTaGCAGCTCAGGTGGCACTGGCAAGGGCTTGGCTCC +
Preference number: 6 (lower is better)
Translates to: RVAQLALRPHKW*QLRWHWQGLGS
Trigger: GGAGCCAAGCCCTTGCCAGTGCCACCTGAGCTGGCACCATTTGTGGGGTCTCAAAGCAAGCTGAGCGACTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103021.10
CDS CCA 72 bp AGCAGACATCCGCCCCACAAATGGTGCCAGCTCAGGTaGCACTGGCAAGGGCTTGGCTCCAGGAATGGGATC +
Preference number: 6 (lower is better)
Translates to: SRHPPHKWCQLR*HWQGLGSRNGI
Trigger: GATCCCATTCCTGGAGCCAAGCCCTTGCCAGTGCCACCTGAGCTGGCACCATTTGTGGGGCGGATGTCTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CAA 72 bp GGGGAGTGTGTTGGAGTACGAGTCGCTCAGCTTGCTTaGAGACTGCGGGGGAGACAGGGATTTGGGCTGGGC +
Preference number: 6 (lower is better)
Translates to: GECVGVRVAQLA*RLRGRQGFGLG
Trigger: GCCCAGCCCAAATCCCTGTCTCCCCCGCAGTCTCAAAGCAAGCTGAGCGACTCGTACTCCAACACACTCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CAA 90 bp CTCAGCAGAGTGCTATTGTCACCGGCCGCGTGGGAGAAAATGGCCTaGACCCGCATGCGGCCATTACGTTCTAGGCCAGCTGCCATGGAG +
Preference number: 6 (lower is better)
Translates to: LSRVLLSPAAWEKMA*TRMRPLRSRPAAME
Trigger: CTCCATGGCAGCTGGCCTAGAACGTAATGGCCGCATGCGGGTCAAGGCCATTTTCTCCCACGCGGCCGGTGACAATAGCACTCTGCTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS TCA 72 bp TGTAGTCCTCGCTGTCCGGGCCTGCGACGCCATTCATaGCAGGTACATTCTCCTGAGCAGACATCCGCCCCA +
Preference number: 6 (lower is better)
Translates to: CSPRCPGLRRHS*QVHSPEQTSAP
Trigger: TGGGGCGGATGTCTGCTCAGGAGAATGTACCTGTCATGAATGGCGTCGCAGGCCCGGACAGCGAGGACTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS TCA 72 bp TGCTATTGTCACCGGCCGCGTGGGAGAAAATGGCCTTaGCCCGCATGCGGCCATTACGTTCTAGGCCAGCTG +
Preference number: 6 (lower is better)
Translates to: CYCHRPRGRKWP*PACGHYVLGQL
Trigger: CAGCTGGCCTAGAACGTAATGGCCGCATGCGGGTCAAGGCCATTTTCTCCCACGCGGCCGGTGACAATAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp TACATTCTCCTGAGCAGACATCCGCCCCACAAATGGTaGCAGCTCAGGTGGCACTGGCAAGGGCTTGGCTCC +
Preference number: 6 (lower is better)
Translates to: YILLSRHPPHKW*QLRWHWQGLGS
Trigger: GGAGCCAAGCCCTTGCCAGTGCCACCTGAGCTGGCACCATTTGTGGGGCGGATGTCTGCTCAGGAGAATGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp GCACGGGGAGTGTGTTGGAGTACGAGTCGCTCAGCTTaGTTTGAGACTGCGGGGGAGACAGGGATTTGGGCT +
Preference number: 6 (lower is better)
Translates to: ARGVCWSTSRSA*FETAGETGIWA
Trigger: AGCCCAAATCCCTGTCTCCCCCGCAGTCTCAAAGCAAGCTGAGCGACTCGTACTCCAACACACTCCCCGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp CAGTGGTGGCATAGCTGTTCTTCGGCGTCACGCTCTTaGGCACGGGGAGTGTGTTGGAGTACGAGTCGCTCA +
Preference number: 6 (lower is better)
Translates to: QWWHSCSSASRS*ARGVCWSTSRS
Trigger: TGAGCGACTCGTACTCCAACACACTCCCCGTGCGCAAGAGCGTGACGCCGAAGAACAGCTATGCCACCACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp CCTGTGCTGCTGCTCTTGCCCTGCTGCAGGCTCATATaGAATCTGTCACTTCCGTCACTGTCCAGGACCCGG +
Preference number: 6 (lower is better)
Translates to: PVLLLLPCCRLI*NLSLPSLSRTR
Trigger: CCGGGTCCTGGACAGTGACGGAAGTGACAGATTGCATATGAGCCTGCAGCAGGGCAAGAGCAGCAGCACAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp GGAGGGCCAGGTCATCCTTGTCTAGGAGGTTGCCTGTaGTGCTGCTCTTGCCCTGCTGCAGGCTCATATGCA +
Preference number: 6 (lower is better)
Translates to: GGPGHPCLGGCL*CCSCPAAGSYA
Trigger: TGCATATGAGCCTGCAGCAGGGCAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGGATGACCTGGCCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 72 bp AGGTACATTCTCCTGAGCAGACATCCGCCCCACAAATaGTGCCAGCTCAGGTGGCACTGGCAAGGGCTTGGC +
Preference number: 6 (lower is better)
Translates to: RYILLSRHPPHK*CQLRWHWQGLG
Trigger: GCCAAGCCCTTGCCAGTGCCACCTGAGCTGGCACCATTTGTGGGGCGGATGTCTGCTCAGGAGAATGTACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 72 bp TCTTCGGCGTCACGCTCTTGCGCACGGGGAGTGTGTTaGAGTACGAGTCGCTCAGCTTGCTTTGAGACTGCG +
Preference number: 6 (lower is better)
Translates to: SSASRSCARGVC*STSRSACFETA
Trigger: CGCAGTCTCAAAGCAAGCTGAGCGACTCGTACTCCAACACACTCCCCGTGCGCAAGAGCGTGACGCCGAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 72 bp TCTTCGGCGTCACGCTCTTGCGCACGGGGAGTGTGTTaGAGTACGAGTCGCTCAGCTTGCTTTGAGACCCCA +
Preference number: 6 (lower is better)
Translates to: SSASRSCARGVC*STSRSACFETP
Trigger: TGGGGTCTCAAAGCAAGCTGAGCGACTCGTACTCCAACACACTCCCCGTGCGCAAGAGCGTGACGCCGAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103021.10
CDS CAA 72 bp ATCTGTTGCATCAGCTGGACAGCACGGTCTGGGATCTaGTTGGGGTCGGCACAGGCTTGCTGCCACAGAGGC +
Preference number: 6 (lower is better)
Translates to: ICCISWTARSGI*LGSAQACCHRG
Trigger: GCCTCTGTGGCAGCAAGCCTGTGCCGACCCCAACAAGATCCCAGACCGTGCTGTCCAGCTGATGCAACAGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CAA 72 bp GTGCTATTGTCACCGGCCGCGTGGGAGAAAATGGCCTaGACCCGCATGCGGCCATTACGTTCTAGGCCAGCT +
Preference number: 6 (lower is better)
Translates to: VLLSPAAWEKMA*TRMRPLRSRPA
Trigger: AGCTGGCCTAGAACGTAATGGCCGCATGCGGGTCAAGGCCATTTTCTCCCACGCGGCCGGTGACAATAGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CAA 90 bp CTATTGGCCATCTGTTGCATCAGCTGGACAGCACGGTCTGGGATCTaGTTGGGGTCGGCACAGGCTTGCTGCCACAGAGGCAGCTTCTGG +
Preference number: 6 (lower is better)
Translates to: LLAICCISWTARSGI*LGSAQACCHRGSFW
Trigger: CCAGAAGCTGCCTCTGTGGCAGCAAGCCTGTGCCGACCCCAACAAGATCCCAGACCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CAA 90 bp ATCCGCCCCACAAATGGTGCCAGCTCAGGTGGCACTGGCAAGGGCTaGGCTCCAGGAATGGGATCTGAGATGACCAGGTTGGACTTGGAA +
Preference number: 6 (lower is better)
Translates to: IRPTNGASSGGTGKG*APGMGSEMTRLDLE
Trigger: TTCCAAGTCCAACCTGGTCATCTCAGATCCCATTCCTGGAGCCAAGCCCTTGCCAGTGCCACCTGAGCTGGCACCATTTGTGGGGCGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS TCA 72 bp GGGCCTGCGACGCCATTCATGACAGGTACATTCTCCTaGGCAGACATCCGCCCCACAAATGGTGCCAGCTCA +
Preference number: 6 (lower is better)
Translates to: GPATPFMTGTFS*ADIRPTNGASS
Trigger: TGAGCTGGCACCATTTGTGGGGCGGATGTCTGCTCAGGAGAATGTACCTGTCATGAATGGCGTCGCAGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 72 bp AACTGGTTCTGGATCTGCCGGTGCACCTCAGCCATCTaGAAGAGGACGTCCCCAAGTTCCTTAGAGCCCTGG +
Preference number: 6 (lower is better)
Translates to: NWFWICRCTSAI*KRTSPSSLEPW
Trigger: CCAGGGCTCTAAGGAACTTGGGGACGTCCTCTTCCAGATGGCTGAGGTGCACCGGCAGATCCAGAACCAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 72 bp ATTGGCCATCTGTTGCATCAGCTGGACAGCACGGTCTaGGATCTTGTTGGGGTCGGCACAGGCTTGCTGCCA +
Preference number: 6 (lower is better)
Translates to: IGHLLHQLDSTV*DLVGVGTGLLP
Trigger: TGGCAGCAAGCCTGTGCCGACCCCAACAAGATCCCAGACCGTGCTGTCCAGCTGATGCAACAGATGGCCAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 72 bp CCCGCATGCGGCCATTACGTTCTAGGCCAGCTGCCATaGAGCTTGAACGTGGCAGTGTCTTGTTCTCAGTGG +
Preference number: 6 (lower is better)
Translates to: PACGHYVLGQLP*SLNVAVSCSQW
Trigger: CCACTGAGAACAAGACACTGCCACGTTCAAGCTCCATGGCAGCTGGCCTAGAACGTAATGGCCGCATGCGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 72 bp CTTGCTTTGAGACCCCACAAATGGTGCCAGCTCAGGTaGCACTGGCAAGGGCTTGGCTCCAGGAATGGGATC +
Preference number: 6 (lower is better)
Translates to: LALRPHKWCQLR*HWQGLGSRNGI
Trigger: GATCCCATTCCTGGAGCCAAGCCCTTGCCAGTGCCACCTGAGCTGGCACCATTTGTGGGGTCTCAAAGCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103021.10
CDS CAA 72 bp ATGAGGTCGCCCTCCTTGAAGCTCAGCAGAGTGCTATaGTCACCGGCCGCGTGGGAGAAAATGGCCTTGACC +
Preference number: 6 (lower is better)
Translates to: MRSPSLKLSRVL*SPAAWEKMALT
Trigger: GGTCAAGGCCATTTTCTCCCACGCGGCCGGTGACAATAGCACTCTGCTGAGCTTCAAGGAGGGCGACCTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS TCA 72 bp CTGGCAAGGGCTTGGCTCCAGGAATGGGATCTGAGATaGCCAGGTTGGACTTGGAAGCTGACAGGGCACTTG +
Preference number: 6 (lower is better)
Translates to: LARAWLQEWDLR*PGWTWKLTGHL
Trigger: CAAGTGCCCTGTCAGCTTCCAAGTCCAACCTGGTCATCTCAGATCCCATTCCTGGAGCCAAGCCCTTGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp CTGTTGGTTTCAGATGGACGTTGGCGAAGGGATTCCTaGTCACAGACCGTGCCCCGTAGTCATCCAGACCCT +
Preference number: 6 (lower is better)
Translates to: LLVSDGRWRRDS*SQTVPRSHPDP
Trigger: AGGGTCTGGATGACTACGGGGCACGGTCTGTGAGCAGGAATCCCTTCGCCAACGTCCATCTGAAACCAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026436.10
CDS CCA 72 bp TTGAAGCTCAGCAGAGTGCTATTGTCACCGGCCGCGTaGGAGAAAATGGCCTTGACCCGCATGCGGCCATTA +
Preference number: 6 (lower is better)
Translates to: LKLSRVLLSPAA*EKMALTRMRPL
Trigger: TAATGGCCGCATGCGGGTCAAGGCCATTTTCTCCCACGCGGCCGGTGACAATAGCACTCTGCTGAGCTTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CAA 90 bp AGGTTGGACTTGGAAGCTGACAGGGCACTTGGAAGGATGGAGCCATaGCTATTGGCCATCTGTTGCATCAGCTGGACAGCACGGTCTGGG +
Preference number: 6 (lower is better)
Translates to: RLDLEADRALGRMEP*LLAICCISWTARSG
Trigger: CCCAGACCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAGCAATGGCTCCATCCTTCCAAGTGCCCTGTCAGCTTCCAAGTCCAACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp AAAGACTTCAGCGTCTCTTCCAACTGGTTCTGGATCTaGCGGTGCACCTCAGCCATCTGGAAGAGGACGTCC +
Preference number: 6 (lower is better)
Translates to: KDFSVSSNWFWI*RCTSAIWKRTS
Trigger: GGACGTCCTCTTCCAGATGGCTGAGGTGCACCGGCAGATCCAGAACCAGTTGGAAGAGACGCTGAAGTCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp CCAGGTCATCCTTGTCTAGGAGGTTGCCTGTGCTGCTaGTCTTGCCCTGCTGCAGGCTCATATGCAATCTGT +
Preference number: 6 (lower is better)
Translates to: PGHPCLGGCLCC*SCPAAGSYAIC
Trigger: ACAGATTGCATATGAGCCTGCAGCAGGGCAAGAGCAGCAGCACAGGCAACCTCCTAGACAAGGATGACCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 72 bp ATGGAGCCATTGCTATTGGCCATCTGTTGCATCAGCTaGACAGCACGGTCTGGGATCTTGTTGGGGTCGGCA +
Preference number: 6 (lower is better)
Translates to: MEPLLLAICCIS*TARSGILLGSA
Trigger: TGCCGACCCCAACAAGATCCCAGACCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAGCAATGGCTCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 72 bp CTGACAGGGCACTTGGAAGGATGGAGCCATTGCTATTaGCCATCTGTTGCATCAGCTGGACAGCACGGTCTG +
Preference number: 6 (lower is better)
Translates to: LTGHLEGWSHCY*PSVASAGQHGL
Trigger: CAGACCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAGCAATGGCTCCATCCTTCCAAGTGCCCTGTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CAA 72 bp GCTGACAGGGCACTTGGAAGGATGGAGCCATTGCTATaGGCCATCTGTTGCATCAGCTGGACAGCACGGTCT +
Preference number: 6 (lower is better)
Translates to: ADRALGRMEPLL*AICCISWTARS
Trigger: AGACCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAGCAATGGCTCCATCCTTCCAAGTGCCCTGTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CAA 72 bp TGCGGCCATTACGTTCTAGGCCAGCTGCCATGGAGCTaGAACGTGGCAGTGTCTTGTTCTCAGTGGTGGCAT +
Preference number: 6 (lower is better)
Translates to: CGHYVLGQLPWS*NVAVSCSQWWH
Trigger: ATGCCACCACTGAGAACAAGACACTGCCACGTTCAAGCTCCATGGCAGCTGGCCTAGAACGTAATGGCCGCA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CAA 72 bp GATCTGTCATTGGTCACTGTTGGTTTCAGATGGACGTaGGCGAAGGGATTCCTGCTCACAGACCGTGCCCCG +
Preference number: 6 (lower is better)
Translates to: DLSLVTVGFRWT*AKGFLLTDRAP
Trigger: CGGGGCACGGTCTGTGAGCAGGAATCCCTTCGCCAACGTCCATCTGAAACCAACAGTGACCAATGACAGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026436.10
CDS TCA 72 bp TTTCCACCAGGAAGCAGAACCTCCTGCGCTCCTCAGTaGGTGCTGTCTTGTAGCCGTCAGACACGTAGTTCT +
Preference number: 6 (lower is better)
Translates to: FPPGSRTSCAPQ*VLSCSRQTRSS
Trigger: AGAACTACGTGTCTGACGGCTACAAGACAGCACTCACTGAGGAGCGCAGGAGGTTCTGCTTCCTGGTGGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp TTGTCTAGGAGGTTGCCTGTGCTGCTGCTCTTGCCCTaGTGCAGGCTCATATGCAATCTGTCACTTCCGTCA +
Preference number: 6 (lower is better)
Translates to: LSRRLPVLLLLP*CRLICNLSLPS
Trigger: TGACGGAAGTGACAGATTGCATATGAGCCTGCAGCAGGGCAAGAGCAGCAGCACAGGCAACCTCCTAGACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 72 bp ACTCCTTGCCCTTGGAATGGTAAGCAGCAGAGTTCTTaGCCACAGCGCACTGCTTTTCCACCAGGAAGCAGA +
Preference number: 6 (lower is better)
Translates to: TPCPWNGKQQSS*PQRTAFPPGSR
Trigger: TCTGCTTCCTGGTGGAAAAGCAGTGCGCTGTGGCCAAGAACTCTGCTGCTTACCATTCCAAGGGCAAGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CCA 72 bp ATCTGTCATTGGTCACTGTTGGTTTCAGATGGACGTTaGCGAAGGGATTCCTGCTCACAGACCGTGCCCCGT +
Preference number: 6 (lower is better)
Translates to: ICHWSLLVSDGR*RRDSCSQTVPR
Trigger: ACGGGGCACGGTCTGTGAGCAGGAATCCCTTCGCCAACGTCCATCTGAAACCAACAGTGACCAATGACAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026436.10
CDS CCA 72 bp GGGGCTGATCTGTCATTGGTCACTGTTGGTTTCAGATaGACGTTGGCGAAGGGATTCCTGCTCACAGACCGT +
Preference number: 6 (lower is better)
Translates to: GADLSLVTVGFR*TLAKGFLLTDR
Trigger: ACGGTCTGTGAGCAGGAATCCCTTCGCCAACGTCCATCTGAAACCAACAGTGACCAATGACAGATCAGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026436.10
CDS CAA 90 bp AAGGGCTTGGCTCCAGGAATGGGATCTGAGATGACCAGGTTGGACTaGGAAGCTGACAGGGCACTTGGAAGGATGGAGCCATTGCTATTG +
Preference number: 6 (lower is better)
Translates to: KGLAPGMGSEMTRLD*EADRALGRMEPLLL
Trigger: CAATAGCAATGGCTCCATCCTTCCAAGTGCCCTGTCAGCTTCCAAGTCCAACCTGGTCATCTCAGATCCCATTCCTGGAGCCAAGCCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS TCA 72 bp GCATCGATGTACTGCAGCTCCTTGTCTGAGTACTTCTaGGGGTTCTTACTCCCTTGGCTCTTCTTGCGGAGC +
Preference number: 6 (lower is better)
Translates to: ASMYCSSLSEYF*GFLLPWLFLRS
Trigger: GCTCCGCAAGAAGAGCCAAGGGAGTAAGAACCCTCAGAAGTACTCAGACAAGGAGCTGCAGTACATCGATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS TCA 72 bp CAGACACGTAGTTCTCCAGCTCGCCCTGCTTATTGCTaGTGGCATCGATGTACTGCAGCTCCTTGTCTGAGT +
Preference number: 6 (lower is better)
Translates to: QTRSSPARPAYC*WHRCTAAPCLS
Trigger: ACTCAGACAAGGAGCTGCAGTACATCGATGCCATCAGCAATAAGCAGGGCGAGCTGGAGAACTACGTGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp CTTGGAAGGATGGAGCCATTGCTATTGGCCATCTGTTaGATCAGCTGGACAGCACGGTCTGGGATCTTGTTG +
Preference number: 6 (lower is better)
Translates to: LGRMEPLLLAIC*ISWTARSGILL
Trigger: CAACAAGATCCCAGACCGTGCTGTCCAGCTGATGCAACAGATGGCCAATAGCAATGGCTCCATCCTTCCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS CAA 72 bp TTGGAAGCTGACAGGGCACTTGGAAGGATGGAGCCATaGCTATTGGCCATCTGTTGCATCAGCTGGACAGCA +
Preference number: 6 (lower is better)
Translates to: LEADRALGRMEP*LLAICCISWTA
Trigger: TGCTGTCCAGCTGATGCAACAGATGGCCAATAGCAATGGCTCCATCCTTCCAAGTGCCCTGTCAGCTTCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp AGCATCGAAATAGCCTTTGGCAGCGAAGGTGACACCTaGCAGTGCTTTCTCATAGTTCTTGCCCATGGCGAT +
Preference number: 6 (lower is better)
Translates to: SIEIAFGSEGDT*QCFLIVLAHGD
Trigger: ATCGCCATGGGCAAGAACTATGAGAAAGCACTGGCAGGTGTCACCTTCGCTGCCAAAGGCTATTTCGATGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS TCA 72 bp TCTACTTTCTGCTCCAGCTGCGTGAGCAGCTCATTGTaGAAAGACTTCAGCGTCTCTTCCAACTGGTTCTGG +
Preference number: 6 (lower is better)
Translates to: STFCSSCVSSSL*KDFSVSSNWFW
Trigger: CCAGAACCAGTTGGAAGAGACGCTGAAGTCTTTTCACAATGAGCTGCTCACGCAGCTGGAGCAGAAAGTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS TCA 72 bp ACCTGGAGTCCAGTTCTACTTTCTGCTCCAGCTGCGTaGGCAGCTCATTGTGAAAAGACTTCAGCGTCTCTT +
Preference number: 6 (lower is better)
Translates to: TWSPVLLSAPAA*AAHCEKTSASL
Trigger: AAGAGACGCTGAAGTCTTTTCACAATGAGCTGCTCACGCAGCTGGAGCAGAAAGTAGAACTGGACTCCAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS GCA 72 bp GAAATAGCCTTTGGCAGCGAAGGTGACACCTGCCAGTaGTTTCTCATAGTTCTTGCCCATGGCGATGAAGTT +
Preference number: 6 (lower is better)
Translates to: EIAFGSEGDTCQ*FLIVLAHGDEV
Trigger: AACTTCATCGCCATGGGCAAGAACTATGAGAAAGCACTGGCAGGTGTCACCTTCGCTGCCAAAGGCTATTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2
CDS TCA 72 bp ATTGCTGATGGCATCGATGTACTGCAGCTCCTTGTCTaGGTACTTCTGAGGGTTCTTACTCCCTTGGCTCTT +
Preference number: 6 (lower is better)
Translates to: IADGIDVLQLLV*VLLRVLTPLAL
Trigger: AAGAGCCAAGGGAGTAAGAACCCTCAGAAGTACTCAGACAAGGAGCTGCAGTACATCGATGCCATCAGCAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026436.10
ENSMUST00000075180.12
ENSMUST00000103021.10
ENSMUST00000106231.8
ENSMUST00000106233.2