RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BAHCC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039741

Ensembl transcript IDs: ENSMUST00000044985.14, ENSMUST00000118987.2, ENSMUST00000122148.8

Found 1193 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCAGACGGGCCCCAAATTCTGGCCCAGACAGGGAGCTGGACCAGCTaGACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCTGTTG +
Preference number: 1 (lower is better)
Translates to: PDGPQILAQTGSWTS*TIGSPAALGGRQLL
Trigger: CAACAGCTGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGCCAGAATTTGGGGCCCGTCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR TCA 90 bp GGGTCTAGGTTGAGAGAAGGGGAGCCGGATGGGCGCCCCCTTGGGTaGGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGC +
Preference number: 1 (lower is better)
Translates to: GSRLREGEPDGRPLG*AASPFYCCDSRTSG
Trigger: GCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTCACCCAAGGGGGCGCCCATCCGGCTCCCCTTCTCTCAACCTAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 90 bp AACAGAAACCCTCAGGGTGGTGGGACAGCCAGGAACGGGCACCCTTaGTGTTCCTGTGGACCACCAAGAGGGACCCTTGGAGCAACTAGT +
Preference number: 1 (lower is better)
Translates to: NRNPQGGGTARNGHP*CSCGPPRGTLGATS
Trigger: ACTAGTTGCTCCAAGGGTCCCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCACCCTGAGGGTTTCTGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 90 bp CACTTCCTAGGAAGCCTTGGCCGAGTGGACACTGGGGAGCACGGGTaGCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGTC +
Preference number: 1 (lower is better)
Translates to: HFLGSLGRVDTGEHG*HKAFLRTKAFGPWV
Trigger: GACCCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCCAGTGTCCACTCGGCCAAGGCTTCCTAGGAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR TCA 90 bp TTGGCCGAGTGGACACTGGGGAGCACGGGTGCCACAAGGCATTTCTaGGAACAAAGGCTTTTGGTCCATGGGTCTAGCCTGCTCTTTCCA +
Preference number: 1 (lower is better)
Translates to: LAEWTLGSTGATRHF*EQRLLVHGSSLLFP
Trigger: TGGAAAGAGCAGGCTAGACCCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCCAGTGTCCACTCGGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 90 bp GTAATTTCCTTCACAGTTGGCCCCCAAGAGATTGGAGGGTATGACTaGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATT +
Preference number: 1 (lower is better)
Translates to: VISFTVGPQEIGGYD*VSCDHPTAFGHAPI
Trigger: AATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCCAGTCATACCCTCCAATCTCTTGGGGGCCAACTGTGAAGGAAATTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 90 bp CAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGTCTAGCCTaGTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTG +
Preference number: 1 (lower is better)
Translates to: QGISENKGFWSMGLA*SFHHGRSEDCLAFL
Trigger: CAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGCAGGCTAGACCCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 90 bp TGCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTaGCCATGGAAACGGAAACCAGAAATAACTTGGAATATTCAGGAA +
Preference number: 1 (lower is better)
Translates to: CTLLEQGQASLPASN*PWKRKPEITWNIQE
Trigger: TTCCTGAATATTCCAAGTTATTTCTGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 90 bp TCCAGGGGACCGCCATCACTGCCCCCACCCAAATACTTTCATGGATaGGATGTATTGAAAGGAAATAAACCGCAGTGTAATTTCCTTCAC +
Preference number: 1 (lower is better)
Translates to: SRGPPSLPPPKYFHG*DVLKGNKPQCNFLH
Trigger: GTGAAGGAAATTACACTGCGGTTTATTTCCTTTCAATACATCCCATCCATGAAAGTATTTGGGTGGGGGCAGTGATGGCGGTCCCCTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 90 bp CTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATaGAAACGGAAACCAGAAATAACTTGGAATATTCAGGAAAGAAAG +
Preference number: 1 (lower is better)
Translates to: LLEQGQASLPASNWP*KRKPEITWNIQERK
Trigger: CTTTCTTTCCTGAATATTCCAAGTTATTTCTGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 90 bp GGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAAAAGGATaGGGGGACCTAAAGATAAAGACAGAGCAAGAGGACAGTTCAGCA +
Preference number: 1 (lower is better)
Translates to: GVTPFACTHRKKGKG*GDLKIKTEQEDSSA
Trigger: TGCTGAACTGTCCTCTTGCTCTGTCTTTATCTTTAGGTCCCCCCATCCTTTTCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 90 bp TTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTaGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAA +
Preference number: 1 (lower is better)
Translates to: LHIYKIRAFYHVSHS*GGGVTPFACTHRKK
Trigger: TTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAAGCAGCCGGTCCCCGTaGGACCAGCCTGGCTCTCCC +
Preference number: 2 (lower is better)
Translates to: RELDQLHHWKPCSSWGKASSRSP*DQPGSP
Trigger: GGGAGAGCCAGGCTGGTCCCACGGGGACCGGCTGCT...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGGGCCGCCTGCACCCTaGTCGAGCAAGGCCAGGCTT +
Preference number: 2 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAGPPAP*SSKARL
Trigger: AAGCCTGGCCTTGCTCGAGCAGGGTGCAGGCGGCCC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAAGCAGCCGGTCCCCGTaGGACCAGCCTGGCTCTCCC +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTSSRSP*DQPGSP
Trigger: GGGAGAGCCAGGCTGGTCCCACGGGGACCGGCTGCT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGCTGGCTGACCTCTTaGCTGCAGTCATGGGCGAGG +
Preference number: 2 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGWLTS*LQSWAR
Trigger: CCTCGCCCATGACTGCAGCCAAGAGGTCAGCCAGCC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGCAGCCGGTCCCCGTaGGACCAGCCTGGCTCTCCC +
Preference number: 2 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGSSRSP*DQPGSP
Trigger: GGGAGAGCCAGGCTGGTCCCACGGGGACCGGCTGCT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGTGTGTAGGTGTGGGGTaGGCAGAGGGGGCCCAGGAT +
Preference number: 2 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRCVGVG*AEGAQD
Trigger: ATCCTGGGCCCCCTCTGCCCACCCCACACCTACACA...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGGGGACCGCCATCACTaGCCCCACCCAAATACTTTC +
Preference number: 2 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGGDRHH*PHPNTF
Trigger: GAAAGTATTTGGGTGGGGGCAGTGATGGCGGTCCCC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
62% GC, longest homopolymer 9 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAAGACCAGCTCCTGGCTaGCTGACCTCTTGGCTGCAG +
Preference number: 2 (lower is better)
Translates to: RELDQLHHWKPCSSWGKARPAPG*LTSWLQ
Trigger: CTGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCT...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACAGCTCCTGGCTGGCTaGCCTCTTGGCTGCAGTCAT +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTQLLAG*PLGCSH
Trigger: ATGACTGCAGCCAAGAGGTCAGCCAGCCAGGAGCTG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGCTCAGACCAGCTCCTaGCTGGCTGACCTCTTGGCT +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTAQTSS*LADLLA
Trigger: AGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTCCTGGGCTGTAGAGTaGGGCAGGCCGGTACCGGCC +
Preference number: 2 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLSWAVE*GRPVPA
Trigger: GGCCGGTACCGGCCTGCCCCACTCTACAGCCCAGGA...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATCTCATGCAGAACTGTaGACCAGCCCCAGACGGGCC +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTSHAEL*TSPRRA
Trigger: GGCCCGTCTGGGGCTGGTCCACAGTTCTGCATGAGA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGAGAAGGGGAGCCGGATaGGCGCCCCCTTGGGTGAGC +
Preference number: 2 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGRRGAG*APPWVS
Trigger: GCTCACCCAAGGGGGCGCCCATCCGGCTCCCCTTCT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACAGAAACCCTCAGGGTaGTGGGACAGCCAGGAACGG +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTQKPSG*WDSQER
Trigger: CCGTTCCTGGCTGTCCCACCACCCTGAGGGTTTCTG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 90 bp AGATTGGAGGGTATGACTGGGTCTCATGTGACCATCCCACGGCCTTaGGCCACGCCCCCATTCCAGCAGCCTCTGCAGTCACAGATGCCC +
Preference number: 2 (lower is better)
Translates to: RLEGMTGSHVTIPRP*ATPPFQQPLQSQMP
Trigger: GGGCATCTGTGACTGCAGAGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCCAGTCATACCCTCCAATCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGACTGGGGAGCACGGGTaGCACAAGGCATTTCTGAGA +
Preference number: 2 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRTGEHG*HKAFLR
Trigger: TCTCAGAAATGCCTTGTGGCACCCGTGCTCCCCAGT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGATTTCTGCTTTCCCTaGTGGGAGACAGTCGGAGGT +
Preference number: 2 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGDFCFP*WETVGG
Trigger: ACCTCCGACTGTCTCCCACCAGGGAAAGCAGAAATC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
60% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCTGGTTCTCATCCTGTaGTTGGAACCCCTGGTCGTT +
Preference number: 2 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGLVLIL*LEPLVV
Trigger: AACGACCAGGGGTTCCAACCACAGGATGAGAACCAG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTCCTGGGCTGTAGAGTaGGGCAGGCCGGTACCGGCC +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSSWAVE*GRPVPA
Trigger: GGCCGGTACCGGCCTGCCCCACTCTACAGCCCAGGA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGGCAGCTGTTGCCCTaGAGGATAAGGAAGGGGCCG +
Preference number: 2 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGRQLLP*RIRKGP
Trigger: CGGCCCCTTCCTTATCCTCCAGGGCAACAGCTGCCT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGACCAGCTGCACCATTaGAAGCCCTGCAGCTCTTGG +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTDQLHH*KPCSSW
Trigger: CCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTCTCATGCAGAACTGTaGACCAGCCCCAGACGGGCC +
Preference number: 2 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGSHAEL*TSPRRA
Trigger: GGCCCGTCTGGGGCTGGTCCACAGTTCTGCATGAGA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCCCAGGGAAAGTATCTaGTGGGGAAAGGGGGTGCAT +
Preference number: 2 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRPRESI*WGKGVH
Trigger: ATGCACCCCCTTTCCCCACCAGATACTTTCCCTGGG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGTCTTGGCTGCAGTCATaGGCGAGGGTGGGCAGAGGC +
Preference number: 2 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWSWLQS*ARVGRG
Trigger: GCCTCTGCCCACCCTCGCCCATGACTGCAGCCAAGA...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAACACACCTGATTTCTaGTTTCCCTGGTGGGAGACA +
Preference number: 2 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGNTPDF*FPWWET
Trigger: TGTCTCCCACCAGGGAAAGCAGAAATCAGGTGTGTT...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTAACACACCTGATTTCTaGTTTCCCTGGTGGGAGACA +
Preference number: 2 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPNTPDF*FPWWET
Trigger: TGTCTCCCACCAGGGAAAGCAGAAATCAGGTGTGTT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGGGCCGCCTGCACCCTaGTCGAGCAAGGCCAGGCTT +
Preference number: 2 (lower is better)
Translates to: RESIWWGKGVHLSGENVLGPPAP*SSKARL
Trigger: AAGCCTGGCCTTGCTCGAGCAGGGTGCAGGCGGCCC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTCTTGGCTGCAGTCATaGGCGAGGGTGGGCAGAGGC +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSSWLQS*ARVGRG
Trigger: GCCTCTGCCCACCCTCGCCCATGACTGCAGCCAAGA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACAGACCAGCTCCTGGCTaGCTGACCTCTTGGCTGCAG +
Preference number: 2 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDRPAPG*LTSWLQ
Trigger: CTGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCT...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATCCTGGGCTGTAGAGTaGGGCAGGCCGGTACCGGCC +
Preference number: 2 (lower is better)
Translates to: VLGVRMCVQEARRDPCCISWAVE*GRPVPA
Trigger: GGCCGGTACCGGCCTGCCCCACTCTACAGCCCAGGA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGAAGCCCTGCAGCTCTTaGGGGAAGGCAGCTGTTGCC +
Preference number: 2 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWKPCSS*GKAAVA
Trigger: GGCAACAGCTGCCTTCCCCCAAGAGCTGCAGGGCTT...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGCCCAGACAGGGAGCTaGACCAGCTGCACCATTGGA +
Preference number: 2 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDAQTGS*TSCTIG
Trigger: TCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGGCTTTCCTGGTACTTaGGGTCAGGATGTGTGTACA +
Preference number: 2 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRGFPGT*GQDVCT
Trigger: TGTACACACATCCTGACCCCAAGTACCAGGAAAGCC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATCAGCTCCTGGCTGGCTaGCCTCTTGGCTGCAGTCAT +
Preference number: 2 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHQLLAG*PLGCSH
Trigger: ATGACTGCAGCCAAGAGGTCAGCCAGCCAGGAGCTG...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATCTTGGCTGCAGTCATaGGCGAGGGTGGGCAGAGGC +
Preference number: 2 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGSWLQS*ARVGRG
Trigger: GCCTCTGCCCACCCTCGCCCATGACTGCAGCCAAGA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGCTGGCTGACCTCTTaGCTGCAGTCATGGGCGAGG +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGWLTS*LQSWAR
Trigger: CCTCGCCCATGACTGCAGCCAAGAGGTCAGCCAGCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCAGACCAGCTCCTGGCTaGCTGACCTCTTGGCTGCAG +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSRPAPG*LTSWLQ
Trigger: CTGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCT...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGCTCAGACCAGCTCCTaGCTGGCTGACCTCTTGGCT +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSAQTSS*LADLLA
Trigger: AGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACTCCCTGCATCAAACTaGCCATGGAAACGGAAACCA +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLPASN*PWKRKP
Trigger: TGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGACCAGCTGCACCATTaGAAGCCCTGCAGCTCTTGG +
Preference number: 2 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLDQLHH*KPCSSW
Trigger: CCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAAGGGAAAGTATCTGGTaGGGAAAGGGGGTGCATCTT +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTRESIW*GKGVHL
Trigger: AAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGAGGCTATCCAGAGGTaGTGGGACCCCAGGGAAAGT +
Preference number: 2 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLEAIQR*WDPRES
Trigger: ACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 90 bp GCTTTCCCTGGTGGGAGACAGTCGGAGGTACTAGGGAAATATGGCTaGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGC +
Preference number: 2 (lower is better)
Translates to: AFPGGRQSEVLGKYG*DSNLSRTAVQRQSS
Trigger: GCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATATTTCCCTAGTACCTCCGACTGTCTCCCACCAGGGAAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGAATAGACAACACACCTaGTTTCTGCTTTCCCTGGTG +
Preference number: 2 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRNRQHT*FLLSLV
Trigger: CACCAGGGAAAGCAGAAATCAGGTGTGTTGTCTATT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATCACCATTGGAAGCCCTaGAGCTCTTGGGGGAAGGCA +
Preference number: 2 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHHHWKP*SSWGKA
Trigger: TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTG...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCCCTTGTCGCAAAGGTaGGGAAAATTCTTTTCCACT +
Preference number: 2 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRPLSQR*GKFFST
Trigger: AGTGGAAAAGAATTTTCCCCACCTTTGCGACAAGGG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAATTGGAGGGTATGACTaGGTCTCATGTGACCATCCC +
Preference number: 2 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVIGGYD*VSCDHP
Trigger: GGGATGGTCACATGAGACCCAGTCATACCCTCCAAT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTAGGCAGCTGTTGCCCTaGAGGATAAGGAAGGGGCCG +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLARQLLP*RIRKGP
Trigger: CGGCCCCTTCCTTATCCTCCAGGGCAACAGCTGCCT...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGCCCAGACAGGGAGCTaGACCAGCTGCACCATTGGA +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAAQTGS*TSCTIG
Trigger: TCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAAAACCCTCAGGGTGGTaGGACAGCCAGGAACGGGCA +
Preference number: 2 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGKPSGW*DSQERA
Trigger: TGCCCGTTCCTGGCTGTCCCACCACCCTGAGGGTTT...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAAATAGACAACACACCTaGTTTCTGCTTTCCCTGGTG +
Preference number: 2 (lower is better)
Translates to: APCSSKARLLSLHQTGHGNRQHT*FLLSLV
Trigger: CACCAGGGAAAGCAGAAATCAGGTGTGTTGTCTATT...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCATTCCAGCAGCCTCTaGAGTCACAGATGCCCCTGT +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSHSSSL*SHRCPC
Trigger: ACAGGGGCATCTGTGACTGCAGAGGCTGCTGGAATG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGGGACCGCCATCACTaGCCCCACCCAAATACTTTC +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGDRHH*PHPNTF
Trigger: GAAAGTATTTGGGTGGGGGCAGTGATGGCGGTCCCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCAGGCTTCTCTCCCTaGATCAAACTGGCCATGGAA +
Preference number: 2 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPGFSP*IKLAME
Trigger: TTCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAGCTCAGACCAGCTCCTaGCTGGCTGACCTCTTGGCT +
Preference number: 2 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIAQTSS*LADLLA
Trigger: AGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGC...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACCCTTGTCGCAAAGGTaGGGAAAATTCTTTTCCACT +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTPLSQR*GKFFST
Trigger: AGTGGAAAAGAATTTTCCCCACCTTTGCGACAAGGG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 90 bp GGACCCTGGTGGTCATCTCTTCTGATGACCACCAAGGATGGAATATaGCACTCATGTGGAGAACAGAAACCCTCAGGGTGGTGGGACAGC +
Preference number: 2 (lower is better)
Translates to: GPWWSSLLMTTKDGI*HSCGEQKPSGWWDS
Trigger: GCTGTCCCACCACCCTGAGGGTTTCTGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGACCACCAGGGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAATGGATGGGATGTATTaGAAGGAAATAAACCGCAGT +
Preference number: 2 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAMDGMY*KEINRS
Trigger: ACTGCGGTTTATTTCCTTTCAATACATCCCATCCAT...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGTGAGAATGTTCTCATaGAGAACTGTGGACCAGCCC +
Preference number: 2 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWVRMFS*RTVDQP
Trigger: GGGCTGGTCCACAGTTCTGCATGAGAACATTCTCAC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTTCTGCTTTCCCTGGTaGGAGACAGTCGGAGGTACT +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSFCFPW*ETVGGT
Trigger: AGTACCTCCGACTGTCTCCCACCAGGGAAAGCAGAA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGATTTCTGCTTTCCCTaGTGGGAGACAGTCGGAGGT +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSDFCFP*WETVGG
Trigger: ACCTCCGACTGTCTCCCACCAGGGAAAGCAGAAATC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACCTCCCTGCATCAAACTaGCCATGGAAACGGAAACCA +
Preference number: 2 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDLPASN*PWKRKP
Trigger: TGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAG...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACCCAGGGAAAGTATCTaGTGGGGAAAGGGGGTGCAT +
Preference number: 2 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGPRESI*WGKGVH
Trigger: ATGCACCCCCTTTCCCCACCAGATACTTTCCCTGGG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAATGGATGGGATGTATTaGAAGGAAATAAACCGCAGT +
Preference number: 2 (lower is better)
Translates to: APCSSKARLLSLHQTGHGMDGMY*KEINRS
Trigger: ACTGCGGTTTATTTCCTTTCAATACATCCCATCCAT...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACATTCCAGCAGCCTCTaGAGTCACAGATGCCCCTGT +
Preference number: 2 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIHSSSL*SHRCPC
Trigger: ACAGGGGCATCTGTGACTGCAGAGGCTGCTGGAATG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACCAGGCTTCTCTCCCTaGATCAAACTGGCCATGGAA +
Preference number: 2 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGPGFSP*IKLAME
Trigger: TTCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGTGAGAATGTTCTCATaGAGAACTGTGGACCAGCCC +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSVRMFS*RTVDQP
Trigger: GGGCTGGTCCACAGTTCTGCATGAGAACATTCTCAC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTTCTGCTTTCCCTGGTaGGAGACAGTCGGAGGTACT +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAFCFPW*ETVGGT
Trigger: AGTACCTCCGACTGTCTCCCACCAGGGAAAGCAGAA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATCTCCCTGCATCAAACTaGCCATGGAAACGGAAACCA +
Preference number: 2 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHLPASN*PWKRKP
Trigger: TGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAG...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAACCCAAATACTTTCATaGATGGGATGTATTGAAAGG +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTTQILS*MGCIER
Trigger: CCTTTCAATACATCCCATCCATGAAAGTATTTGGGT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATATATACTCTGTGCATaGGCCTGCCATGCTATCTGC +
Preference number: 2 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGYILCA*ACHAIC
Trigger: GCAGATAGCATGGCAGGCTCATGCACAGAGTATATA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTAACACACCTGATTTCTaGTTTCCCTGGTGGGAGACA +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLANTPDF*FPWWET
Trigger: TGTCTCCCACCAGGGAAAGCAGAAATCAGGTGTGTT...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATTGGAGGGTATGACTaGGTCTCATGTGACCATCCC +
Preference number: 2 (lower is better)
Translates to: RESIWWGKGVHLSGENVLIGGYD*VSCDHP
Trigger: GGGATGGTCACATGAGACCCAGTCATACCCTCCAAT...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTAGAAGGGGAGCCGGATaGGCGCCCCCTTGGGTGAGC +
Preference number: 2 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVRRGAG*APPWVS
Trigger: GCTCACCCAAGGGGGCGCCCATCCGGCTCCCCTTCT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGAAAAACAGAGTCCCTaGGATCAGGATAGACTCTTG +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAEKQSP*DQDRLL
Trigger: CAAGAGTCTATCCTGATCCCAGGGACTCTGTTTTTC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCCAAGGATGGAATATTaGACTCATGTGGAGAACAGA +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAPRMEY*THVENR
Trigger: TCTGTTCTCCACATGAGTGCAATATTCCATCCTTGG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAAATAGACAACACACCTaGTTTCTGCTTTCCCTGGTG +
Preference number: 2 (lower is better)
Translates to: VISSDDHQGWNIALMWRTNRQHT*FLLSLV
Trigger: CACCAGGGAAAGCAGAAATCAGGTGTGTTGTCTATT...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCACCCAAATACTTTCATaGATGGGATGTATTGAAAGG +
Preference number: 2 (lower is better)
Translates to: RESIWWGKGVHLSGENVLTQILS*MGCIER
Trigger: CCTTTCAATACATCCCATCCATGAAAGTATTTGGGT...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGAAGTGAGGACTGCCTaGCTTTCCTGGTACTTGGGG +
Preference number: 2 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVEVRTA*LSWYLG
Trigger: CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGTTGTATATACTCTGTaGATGAGCCTGCCATGCTAT +
Preference number: 2 (lower is better)
Translates to: VISSDDHQGWNIALMWRTVVYTL*MSLPCY
Trigger: ATAGCATGGCAGGCTCATGCACAGAGTATATACAAC...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGATTTCTGCTTTCCCTaGTGGGAGACAGTCGGAGGT +
Preference number: 2 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVDFCFP*WETVGG
Trigger: ACCTCCGACTGTCTCCCACCAGGGAAAGCAGAAATC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGTGAGAATGTTCTCATaGAGAACTGTGGACCAGCCC +
Preference number: 2 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVVRMFS*RTVDQP
Trigger: GGGCTGGTCCACAGTTCTGCATGAGAACATTCTCAC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTAATATTGCACTCATGTaGAGAACAGAAACCCTCAGG +
Preference number: 2 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVNIALM*RTETLR
Trigger: CCTGAGGGTTTCTGTTCTCCACATGAGTGCAATATT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp AGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCCCCGTaGGACCAGCCTGGCTCTCCCCCTGGAGCAGCTAGG +
Preference number: 3 (lower is better)
Translates to: RTAVQRQSSRSP*DQPGSPPGAAR
Trigger: CCTAGCTGCTCCAGGGGGAGAGCCAGGCTGGTCCCACGGGGACCGGCTGCTCTGCCGCTGCACCGCAGTTCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp GATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTaGGGCAGGCCGGTACCGGCCCGCAGGCTGATCCTG +
Preference number: 3 (lower is better)
Translates to: DTWLLPYSWAVE*GRPVPARRLIL
Trigger: CAGGATCAGCCTGCGGGCCGGTACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGTGGCTGGCTGACCTCTaGGCTGCAGTCATGGGCGAG +
Preference number: 3 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGWLADL*AAVMGE
Trigger: CTCGCCCATGACTGCAGCCAAGAGGTCAGCCAGCCA...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTTGGCTGGCTGACCTCTaGGCTGCAGTCATGGGCGAG +
Preference number: 3 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPWLADL*AAVMGE
Trigger: CTCGCCCATGACTGCAGCCAAGAGGTCAGCCAGCCA...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp GTACCGGCCCGCAGGCTGATCCTGGTTCTCATCCTGTaGTTGGAACCCCTGGTCGTTCCAGGGGACCGCCAT +
Preference number: 3 (lower is better)
Translates to: VPARRLILVLIL*LEPLVVPGDRH
Trigger: ATGGCGGTCCCCTGGAACGACCAGGGGTTCCAACCACAGGATGAGAACCAGGATCAGCCTGCGGGCCGGTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACAGGAACGGGCACCCTaGGTGTTCCTGTGGACCACC +
Preference number: 3 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTQERAP*VFLWTT
Trigger: GGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 72 bp CCCCAAATTCTGGCCCAGACAGGGAGCTGGACCAGCTaGACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGG +
Preference number: 3 (lower is better)
Translates to: PQILAQTGSWTS*TIGSPAALGGR
Trigger: CCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGCCAGAATTTGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp TCTGGCCCAGACAGGGAGCTGGACCAGCTGCACCATTaGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCTGTT +
Preference number: 3 (lower is better)
Translates to: SGPDRELDQLHH*KPCSSWGKAAV
Trigger: AACAGCTGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGCCAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp CCAGACGGGCCCCAAATTCTGGCCCAGACAGGGAGCTaGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTT +
Preference number: 3 (lower is better)
Translates to: PDGPQILAQTGS*TSCTIGSPAAL
Trigger: AAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGCCAGAATTTGGGGCCCGTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp AGAACTGTGGACCAGCCCCAGACGGGCCCCAAATTCTaGCCCAGACAGGGAGCTGGACCAGCTGCACCATTG +
Preference number: 3 (lower is better)
Translates to: RTVDQPQTGPKF*PRQGAGPAAPL
Trigger: CAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGCCAGAATTTGGGGCCCGTCTGGGGCTGGTCCACAGTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGGACCAGCTGCACCATaGGAAGCCCTGCAGCTCTTG +
Preference number: 3 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTGPAAP*EALQLL
Trigger: CAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 72 bp GGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTaGTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAG +
Preference number: 3 (lower is better)
Translates to: GEGSTQDNSLST*SGAPGYWGSGQ
Trigger: CTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGACCATCCCACGGCCTTaGGCCACGCCCCCATTCCAG +
Preference number: 3 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLTIPRP*ATPPFQ
Trigger: CTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGT...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGTTGGCCCCCAAGAGATaGGAGGGTATGACTGGGTCT +
Preference number: 3 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRLAPKR*EGMTGS
Trigger: AGACCCAGTCATACCCTCCAATCTCTTGGGGGCCAA...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR TCA 72 bp TTGAGAGAAGGGGAGCCGGATGGGCGCCCCCTTGGGTaGGCAGCATCGCCTTTCTACTGTTGTGACTCCAGA +
Preference number: 3 (lower is better)
Translates to: LREGEPDGRPLG*AASPFYCCDSR
Trigger: TCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTCACCCAAGGGGGCGCCCATCCGGCTCCCCTTCTCTCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 72 bp AATATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTaGAGCGGCAGAGCAGCCGGTCCCCGTGGGACCAGC +
Preference number: 3 (lower is better)
Translates to: NMAWILISRELR*SGRAAGPRGTS
Trigger: GCTGGTCCCACGGGGACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 72 bp CACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCTaGAGTCACAGATGCCCCTGTTGGAATTCAACTAGG +
Preference number: 3 (lower is better)
Translates to: HGLWPRPHSSSL*SHRCPCWNSTR
Trigger: CCTAGTTGAATTCCAACAGGGGCATCTGTGACTGCAGAGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGTTCTCATCCTGTGGTaGGAACCCCTGGTCGTTCCA +
Preference number: 3 (lower is better)
Translates to: APCSSKARLLSLHQTGHGVLILW*EPLVVP
Trigger: TGGAACGACCAGGGGTTCCAACCACAGGATGAGAAC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGAAGCCCTGCAGCTCTaGGGGGAAGGCAGCTGTTGC +
Preference number: 3 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDEALQL*GEGSCC
Trigger: GCAACAGCTGCCTTCCCCCAAGAGCTGCAGGGCTTC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGGGGAAGGCAGCTGTaGCCCTGGAGGATAAGGAAG +
Preference number: 3 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGGRQL*PWRIRK
Trigger: CTTCCTTATCCTCCAGGGCAACAGCTGCCTTCCCCC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
58% GC, longest homopolymer 9 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACATGGCTATCCACACTaGAGGCTATCCAGAGGTGGT +
Preference number: 3 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTHGYPH*RLSRGG
Trigger: ACCACCTCTGGATAGCCTCAAGTGTGGATAGCCATG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR TCA 72 bp CAGAACCTCTGGCTCAGCCTCATGGCTATCCACACTTaGGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAG +
Preference number: 3 (lower is better)
Translates to: QNLWLSLMAIHT*GYPEVVGPQGK
Trigger: CTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGGATAGCCATGAGGCTGAGCCAGAGGTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp TTGCACTCATGTGGAGAACAGAAACCCTCAGGGTGGTaGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTG +
Preference number: 3 (lower is better)
Translates to: LHSCGEQKPSGW*DSQERAPLVFL
Trigger: CAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCACCCTGAGGGTTTCTGTTCTCCACATGAGTGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAACCATCCCACGGCCTTaGGCCACGCCCCCATTCCAG +
Preference number: 3 (lower is better)
Translates to: VLGVRMCVQEARRDPCCITIPRP*ATPPFQ
Trigger: CTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGT...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGAAGCCCTGCAGCTCTaGGGGGAAGGCAGCTGTTGC +
Preference number: 3 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGEALQL*GEGSCC
Trigger: GCAACAGCTGCCTTCCCCCAAGAGCTGCAGGGCTTC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGACCAGCTGCACCATaGGAAGCCCTGCAGCTCTTG +
Preference number: 3 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGPAAP*EALQLL
Trigger: CAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGGATCAGGGTCTAGGTaGAGAGAAGGGGAGCCGGAT +
Preference number: 3 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDGSGSR*REGEPD
Trigger: ATCCGGCTCCCCTTCTCTCAACCTAGACCCTGATCC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 72 bp CCACGCCCCCATTCCAGCAGCCTCTGCAGTCACAGATaGCCCTGTTGGAATTCAACTAGGCTGAGAACAGTG +
Preference number: 3 (lower is better)
Translates to: PRPHSSSLCSHR*PCWNSTRLRTV
Trigger: CACTGTTCTCAGCCTAGTTGAATTCCAACAGGGGCATCTGTGACTGCAGAGGCTGCTGGAATGGGGGCGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 72 bp GGAAGCCTTGGCCGAGTGGACACTGGGGAGCACGGGTaGCACAAGGCATTTCTGAGAACAAAGGCTTTTGGT +
Preference number: 3 (lower is better)
Translates to: GSLGRVDTGEHG*HKAFLRTKAFG
Trigger: ACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCCAGTGTCCACTCGGCCAAGGCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp TTCACAGTTGGCCCCCAAGAGATTGGAGGGTATGACTaGGTCTCATGTGACCATCCCACGGCCTTTGGCCAC +
Preference number: 3 (lower is better)
Translates to: FTVGPQEIGGYD*VSCDHPTAFGH
Trigger: GTGGCCAAAGGCCGTGGGATGGTCACATGAGACCCAGTCATACCCTCCAATCTCTTGGGGGCCAACTGTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp TCATGGCTATCCACACTTGAGGCTATCCAGAGGTGGTaGGACCCCAGGGAAAGTATCTGGTGGGGAAAGGGG +
Preference number: 3 (lower is better)
Translates to: SWLSTLEAIQRW*DPRESIWWGKG
Trigger: CCCCTTTCCCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGGATAGCCATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp GCCTCATGGCTATCCACACTTGAGGCTATCCAGAGGTaGTGGGACCCCAGGGAAAGTATCTGGTGGGGAAAG +
Preference number: 3 (lower is better)
Translates to: ASWLSTLEAIQR*WDPRESIWWGK
Trigger: CTTTCCCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGGATAGCCATGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGGGGAAGGCAGCTGTaGCCCTGGAGGATAAGGAAG +
Preference number: 3 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGGRQL*PWRIRK
Trigger: CTTCCTTATCCTCCAGGGCAACAGCTGCCTTCCCCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGGGGGAAGGCAGCTGTaGCCCTGGAGGATAAGGAAG +
Preference number: 3 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGGGRQL*PWRIRK
Trigger: CTTCCTTATCCTCCAGGGCAACAGCTGCCTTCCCCC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR TCA 72 bp TGGACACTGGGGAGCACGGGTGCCACAAGGCATTTCTaGGAACAAAGGCTTTTGGTCCATGGGTCTAGCCTG +
Preference number: 3 (lower is better)
Translates to: WTLGSTGATRHF*EQRLLVHGSSL
Trigger: CAGGCTAGACCCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCCAGTGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 72 bp CTGCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTaGATCAAACTGGCCATGGAAACGGAAACCAGAAAT +
Preference number: 3 (lower is better)
Translates to: LHPARARPGFSP*IKLAMETETRN
Trigger: ATTTCTGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGTTCTCATCCTGTGGTaGGAACCCCTGGTCGTTCCA +
Preference number: 3 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHVLILW*EPLVVP
Trigger: TGGAACGACCAGGGGTTCCAACCACAGGATGAGAAC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGGACCAGCTGCACCATaGGAAGCCCTGCAGCTCTTG +
Preference number: 3 (lower is better)
Translates to: RESIWWGKGVHLSGENVLGPAAP*EALQLL
Trigger: CAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGGATCAGGGTCTAGGTaGAGAGAAGGGGAGCCGGAT +
Preference number: 3 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGGSGSR*REGEPD
Trigger: ATCCGGCTCCCCTTCTCTCAACCTAGACCCTGATCC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp ATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTaGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTT +
Preference number: 3 (lower is better)
Translates to: IQRWWDPRESIW*GKGVHLSGENV
Trigger: AACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR TCA 72 bp GGCCAGAAGGGACCCTTGTTGTATATACTCTGTGCATaGGCCTGCCATGCTATCTGCCCTGCTGAGTGGATA +
Preference number: 3 (lower is better)
Translates to: GQKGPLLYILCA*ACHAICPAEWI
Trigger: TATCCACTCAGCAGGGCAGATAGCATGGCAGGCTCATGCACAGAGTATATACAACAAGGGTCCCTTCTGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp CGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTaGTCCATGGGTCTAGCCTGCTCTTTCCATCATGGG +
Preference number: 3 (lower is better)
Translates to: RVPQGISENKGF*SMGLACSFHHG
Trigger: CCCATGATGGAAAGAGCAGGCTAGACCCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTGGCTTTCCTGGTACTaGGGGTCAGGATGTGTGTAC +
Preference number: 3 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAWLSWY*GSGCVY
Trigger: GTACACACATCCTGACCCCAAGTACCAGGAAAGCCA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACCATGGATGGGATGTATaGAAAGGAAATAAACCGCAG +
Preference number: 3 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDHGWDV*KGNKPQ
Trigger: CTGCGGTTTATTTCCTTTCAATACATCCCATCCATG...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp TACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTaGGGAGGAGGAGTCACGCCATTTGCGTGTACACAC +
Preference number: 3 (lower is better)
Translates to: YKIRAFYHVSHS*GGGVTPFACTH
Trigger: GTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAACCAAGGATGGAATATaGCACTCATGTGGAGAACAG +
Preference number: 3 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGTKDGI*HSCGEQ
Trigger: CTGTTCTCCACATGAGTGCAATATTCCATCCTTGGT...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp ACCCTGGTGGTCATCTCTTCTGATGACCACCAAGGATaGAATATTGCACTCATGTGGAGAACAGAAACCCTC +
Preference number: 3 (lower is better)
Translates to: TLVVISSDDHQG*NIALMWRTETL
Trigger: GAGGGTTTCTGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGACCACCAGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp CAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATaGAAACGGAAACCAGAAATAACTTGGAATATTCAG +
Preference number: 3 (lower is better)
Translates to: QGQASLPASNWP*KRKPEITWNIQ
Trigger: CTGAATATTCCAAGTTATTTCTGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCATGGATGGGATGTATaGAAAGGAAATAAACCGCAG +
Preference number: 3 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVHGWDV*KGNKPQ
Trigger: CTGCGGTTTATTTCCTTTCAATACATCCCATCCATG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCGCTGGGCGTGGGTGTaGGCGTGGGGGCTGCTACCC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGRWAWV*AWGLLP
Trigger: GGGTAGCAGCCCCCACGCGCACACCCACGCCCAGCG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCAGGGCCTGCCTCCTTaGAGGGCCCCTCGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPQGLPP*RAPRQA
Trigger: TGCCTGCCGAGGGGCCCTGCAAGGAGGCAGGCCCTG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCAGGACCCGATGGGATaGGCAGGGGTGGCTCGGGGC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGQDPMG*AGVARG
Trigger: GCCCCGAGCCACCCCTGCCCATCCCATCGGGTCCTG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGCTGAGGGGCGGGGGTaGCCCGGTAGGCAGGCCAGA +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRAEGRG*PGRQAR
Trigger: TCTGGCCTGCCTACCGGGCCACCCCCGCCCCTCAGC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCCCGGGCCCCATACATaGGGGGCCACAGGGAGGCCT +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGPGPHT*GATGRP
Trigger: AGGCCTCCCTGTGGCCCCCCATGTATGGGGCCCGGG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTTGCGCTTTCTTGGCCTaGCAGGCCCCCGCCGTGCAG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPCAFLA*QAPAVQ
Trigger: CTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCA...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGATGGTGCAGGACCGTaGCAGGGCGGCGCTCTGCTC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGDGAGP*QGGALL
Trigger: GAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
67% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCTGGCCCCTGCACCTaGACCAGCCACCCCAGCCCT +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAAGPCT*TSHPSP
Trigger: AGGGCTGGGGTGGCTGGTGCAGGTGCAGGGGCCAGC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGCTGAGGGGCGGGGGTaGCCCGGTAGGCAGGCCAGA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGAEGRG*PGRQAR
Trigger: TCTGGCCTGCCTACCGGGCCACCCCCGCCCCTCAGC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTTGCGATGCCCACGGGTaGCTGCCTCACCTCCCCGTC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPCDAHG*LPHLPV
Trigger: GACGGGGAGGTGAGGCAGCCACCCGTGGGCATCGCA...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGGCGCTGGGCCGAGGTaGTGGTGTGGGGCAACTCGC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRGAGPR*WCGATR
Trigger: GCGAGTTGCCCCACACCACCACCTCGGCCCAGCGCC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGGCGCTGGGCCGAGGTaGTGGTGTGGGGCAACTCGC +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAGAGPR*WCGATR
Trigger: GCGAGTTGCCCCACACCACCACCTCGGCCCAGCGCC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGGCCTTCTTCTTGCCTaGTGCACCCGGGGGCCGCCG +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRGLLLA*CTRGPP
Trigger: CGGCGGCCCCCGGGTGCACCAGGCAAGAAGAAGGCC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGTCTGAGGCCCCCGTaGGGGACTTGGCACCTGAGG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGLRPP*GTWHLR
Trigger: CCTCAGGTGCCAAGTCCCCCACGGGGGCCTCAGACC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCTGCGGCCTAGGAAGTaGTCTGAGGCCCCCGTGGGG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPLRPRK*SEAPVG
Trigger: CCCCACGGGGGCCTCAGACCACTTCCTAGGCCGCAG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGCATCCCTGGCCCTTaGGAGCAGCCCAGGCTCTTC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGIPGP*EQPRLF
Trigger: GAAGAGCCTGGGCTGCTCTCAAGGGCCAGGGATGCC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGGCATCCCTGGCCCTTaGGAGCAGCCCAGGCTCTTC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGGIPGP*EQPRLF
Trigger: GAAGAGCCTGGGCTGCTCTCAAGGGCCAGGGATGCC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
66% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACAGGGCCTGCCTCCTTaGAGGGCCCCTCGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGQGLPP*RAPRQA
Trigger: TGCCTGCCGAGGGGCCCTGCAAGGAGGCAGGCCCTG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACCGGGGTGCAGGGCCTaGCTCCTTGCAGGGCCCCTC +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAPGCRA*LLAGPL
Trigger: GAGGGGCCCTGCAAGGAGGCAGGCCCTGCACCCCGG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGGTGGGGGCGGCCCTaGCCTGCCGCCCACTGTTGG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGRWGRP*PAAHCW
Trigger: CCAACAGTGGGCGGCAGGGCAGGGCCGCCCCCACCT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGTCCACAAGGAGGGACTaGGGGTGCGGGGCAGCCAGT +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGSTRRD*GCGAAS
Trigger: ACTGGCTGCCCCGCACCCGCAGTCCCTCCTTGTGGA...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGGGGTAGGTTCTGGTaGAGGGCGGGGTGTCCGAGA +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGGRFW*RAGCPR
Trigger: TCTCGGACACCCCGCCCTGCACCAGAACCTACCCCC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGGCGGCGCTCTGCTCTaGGCTGAGCTGTACACCGGC +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAGGALL*AELYTG
Trigger: GCCGGTGTACAGCTCAGCGCAGAGCAGAGCGCCGCC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGATGGTGCAGGACCGTaGCAGGGCGGCGCTCTGCTC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRDGAGP*QGGALL
Trigger: GAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCAGAGGGAGAGGATGTaGGGCCACTGGGGTGTGCCG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPQRERM*GHWGVP
Trigger: CGGCACACCCCAGTGGCCCCACATCCTCTCCCTCTG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCAGAGGGAGAGGATGTaGGGCCACTGGGGTGTGCCG +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGQRERM*GHWGVP
Trigger: CGGCACACCCCAGTGGCCCCACATCCTCTCCCTCTG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGGCTGCAGGACCCGATaGGATGGGCAGGGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRGCRTR*DGQGWL
Trigger: GAGCCACCCCTGCCCATCCCATCGGGTCCTGCAGCC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGTGCCTCCTGCACAGCTaGCCAGGGAGGCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGCLLHS*PGRPCP
Trigger: TGGGCAAGGCCTCCCTGGCCAGCTGTGCAGGAGGCA...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCACCAGGGGGTAGGTTCTaGTGCAGGGCGGGGTGTCCG +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAPGGRF*CRAGCP
Trigger: CGGACACCCCGCCCTGCACCAGAACCTACCCCCTGG...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCCAGCGTGGTCAGGTTaGTTCCAGCCCGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPPAWSG*FQPAGP
Trigger: AGGGCCAGCGGGCTGGAACCAACCTGACCACGCTGG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCCTGGGTGGCATCCCTaGCCCTTGAGAGCAGCCCAG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPPGWHP*PLRAAQ
Trigger: CTGGGCTGCTCTCAAGGGCCAGGGATGCCACCCAGG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGTGCTACCACTGGGGCTaGCCCCTGCACCTGCACCAG +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGCYHWG*PLHLHQ
Trigger: CTGGTGCAGGTGCAGGGGCCAGCCCCAGTGGTAGCA...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGGGTTGCAGGGTCCTaGCACTGCCCGCATACAGCA +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGVAGS*HCPHTA
Trigger: TGCTGTATGCGGGCAGTGTCAGGACCCTGCAACCCC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGTGAGGCAGCCTCGATaGGGTCCCGGCTGCAGGACC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTVRQPR*GPGCRT
Trigger: GGTCCTGCAGCCGGGACCGCATCGAGGCTGCCTCAC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACAGGGCCTGCCTCCTTaGAGGGCCCCTCGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAQGLPP*RAPRQA
Trigger: TGCCTGCCGAGGGGCCCTGCAAGGAGGCAGGCCCTG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCCGGGGTGCAGGGCCTaGCTCCTTGCAGGGCCCCTC +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGPGCRA*LLAGPL
Trigger: GAGGGGCCCTGCAAGGAGGCAGGCCCTGCACCCCGG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAAGGCTCCACGGGGCCTaGCACCTCCTTGGCACAGCG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTRLHGA*HLLGTA
Trigger: CGCTGTGCCAAGGAGGTGGCAGGCCCCGTGGAGCCT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACCTGGCCAAGGCCACTaGGATGCCCACGGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGPGQGH*DAHGWL
Trigger: CAGCCACCCGTGGGCATCGCAGTGGCCTTGGCCAGG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGCCAGTGTGGCCAGGTaGTGCAGGTTGAAGGCCAGC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGASVAR*CRLKAS
Trigger: GCTGGCCTTCAACCTGCAGCACCTGGCCACACTGGC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
64% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCATGGTCATGCCTGCGCTaGAGGCGAGCCAGCTCCCGT +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAWSCLR*RRASSR
Trigger: ACGGGAGCTGGCTCGCCTGCAGCGCAGGCATGACCA...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTAGGCTCTCTGGGAGCTaGCTCTGTCCCCAGGAGTGC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPRLSGS*LCPQEC
Trigger: GCACTCCTGGGGACAGAGGCAGCTCCCAGAGAGCCT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGATGGCCTTGGCGTTaGGGGCTGACAGAGCGATGG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGWPWR*GLTERW
Trigger: CCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCAGAGGGAGAGGATGTaGGGCCACTGGGGTGTGCCG +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRQRERM*GHWGVP
Trigger: CGGCACACCCCAGTGGCCCCACATCCTCTCCCTCTG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGGCTGCAGGACCCGATaGGATGGGCAGGGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGGCRTR*DGQGWL
Trigger: GAGCCACCCCTGCCCATCCCATCGGGTCCTGCAGCC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGCCACCAAGTGCTGCTaGTGCCGGATCCTGGCTACC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPATKCC*CRILAT
Trigger: GGTAGCCAGGATCCGGCACCAGCAGCACTTGGTGGC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGGAGTGGGCAGCTCCTaGGACAGGAGGGCTGCCTGC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTGVGSS*DRRAAC
Trigger: GCAGGCAGCCCTCCTGTCCCAGGAGCTGCCCACTCC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCACCAGCGTGGTCAGGTTaGTTCCAGCCCGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAPAWSG*FQPAGP
Trigger: AGGGCCAGCGGGCTGGAACCAACCTGACCACGCTGG...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGGGCACGGAGGCTGCTaGGGTCTGAGGGTCTGTCAG +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAGHGGC*GLRVCQ
Trigger: CTGACAGACCCTCAGACCCCAGCAGCCTCCGTGCCC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGGCCTTCTTCTTGCCTaGTGCACCCGGGGGCCGCCG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGGLLLA*CTRGPP
Trigger: CGGCGGCCCCCGGGTGCACCAGGCAAGAAGAAGGCC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCCCCCGTGGGGGACTTaGCACCTGAGGTTAGGAGGT +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPPPWGT*HLRLGG
Trigger: ACCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACTGCGGCCTAGGAAGTaGTCTGAGGCCCCCGTGGGG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLRPRK*SEAPVG
Trigger: CCCCACGGGGGCCTCAGACCACTTCCTAGGCCGCAG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGGACGCAGCTGGCTTTaGGGCTGCCCAGGCCCACGA +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGGRSWL*GCPGPR
Trigger: TCGTGGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTTTTGCATTCTGGGGGTaGGCCTGGGGCCTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPFAFWG*AWGLCL
Trigger: CAGACAGAGGCCCCAGGCTCACCCCCAGAATGCAAA...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGCAGCCCCTTGCTCTTaGCCTTTGGCTTCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGAAPCS*PLASAG
Trigger: CCCAGCTGAAGCCAAAGGTCAAGAGCAAGGGGCTGC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGCAGCCCCTTGCTCTTaGCCTTTGGCTTCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPAAPCS*PLASAG
Trigger: CCCAGCTGAAGCCAAAGGTCAAGAGCAAGGGGCTGC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGGTCTGAGCCACTGCTaGCCAGCTCAGCAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTGLSHC*PAQQGA
Trigger: AGCCCCCTGCTGAGCTGGTCAGCAGTGGCTCAGACC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGCTTTCCGCTTGGTCTaGGCCACTGCTGACCAGCTC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPAFRLV*ATADQL
Trigger: GAGCTGGTCAGCAGTGGCTCAGACCAAGCGGAAAGC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAACTCGCCAGGCTGCTaGAGGAGTCAGCTCGGAAGC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGNSPGC*RSQLGS
Trigger: GCTTCCGAGCTGACTCCTTCAGCAGCCTGGCGAGTT...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGGCTCCACGGGGCCTaGCACCTCCTTGGCACAGCG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGRLHGA*HLLGTA
Trigger: CGCTGTGCCAAGGAGGTGGCAGGCCCCGTGGAGCCT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCCATCTGGGCCTGCATaGAGCTGCAGGCAGGGGAAA +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGPSGPA*SCRQGK
Trigger: TTTCCCCTGCCTGCAGCTGCATGCAGGCCCAGATGG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGTCCTTTCCATCACCTaGCACGGCACAGGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPVLSIT*HGTGLC
Trigger: GCAGAGGCCTGTGCCGTGGCAGGTGATGGAAAGGAC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGGGCCTCATGCTCCCTaGTGCGGGCACAGTCGGGTC +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGGPHAP*CGHSRV
Trigger: GACCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACCTGGCCAAGGCCACTaGGATGCCCACGGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAPGQGH*DAHGWL
Trigger: CAGCCACCCGTGGGCATCGCAGTGGCCTTGGCCAGG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATCCACAAGGAGGGACTaGGGGTGCGGGGCAGCCAGT +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGSTRRD*GCGAAS
Trigger: ACTGGCTGCCCCGCACCCGCAGTCCCTCCTTGTGGA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATGGCGGAGGAGGGGGTaGCCTTGGCCATGGGGGTTA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGWRRRG*PWPWGL
Trigger: TAACCCCCATGGCCAAGGGCACCCCCTCCTCCGCCA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATGGTCATGCCTGCGCTaGAGGCGAGCCAGCTCCCGT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTWSCLR*RRASSR
Trigger: ACGGGAGCTGGCTCGCCTGCAGCGCAGGCATGACCA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATGCGCTTTCTTGGCCTaGCAGGCCCCCGCCGTGCAG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVCAFLA*QAPAVQ
Trigger: CTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGGATGGCCTTGGCGTTaGGGGCTGACAGAGCGATGG +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAGWPWR*GLTERW
Trigger: CCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGGCGGCGCTCTGCTCTaGGCTGAGCTGTACACCGGC +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVGGALL*AELYTG
Trigger: GCCGGTGTACAGCTCAGCGCAGAGCAGAGCGCCGCC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGTACCCCCGGCCCTTTaGCACCTGCCGCCGCCGCTG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGVPPAL*HLPPPL
Trigger: CAGCGGCGGCGGCAGGTGGCAAAGGGCCGGGGGTAC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTACCTTTCAGCCGGGGGTaGAGGGCCGCCTCAAAGCCC +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVPFSRG*RAASKP
Trigger: GGGCTTTGAGGCGGCCCTCCACCCCCGGCTGAAAGG...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGGCCTTCCCACCCAGTaGGTCTTGGTGATTGGACCG +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGGLPTQ*VLVIGP
Trigger: CGGTCCAATCACCAAGACCCACTGGGTGGGAAGGCC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
63% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGCCACCAAGTGCTGCTaGTGCCGGATCCTGGCTACC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRATKCC*CRILAT
Trigger: GGTAGCCAGGATCCGGCACCAGCAGCACTTGGTGGC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCCAGGGGGTAGGTTCTaGTGCAGGGCGGGGTGTCCG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGPGGRF*CRAGCP
Trigger: CGGACACCCCGCCCTGCACCAGAACCTACCCCCTGG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTAGGAGGGGGTGCCCTTaGCCATGGGGGTTAAGGCAA +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPRRGCP*PWGLRQ
Trigger: TTGCCTTAACCCCCATGGCCAAGGGCACCCCCTCCT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGCTGGGCCGAGGTGGTaGTGTGGGGCAACTCGCAGG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVAGPRW*CGATRR
Trigger: CCTGCGAGTTGCCCCACACCACCACCTCGGCCCAGC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGCTGGGCCGAGGTGGTaGTGTGGGGCAACTCGCAGG +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAAGPRW*CGATRR
Trigger: CCTGCGAGTTGCCCCACACCACCACCTCGGCCCAGC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTTTGGTTCCAGCCCGCTaGCCCTCCTCACTCTTGTCC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPLVPAR*PSSLLS
Trigger: GGACAAGAGTGAGGAGGGCCAGCGGGCTGGAACCAA...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGAGCTGGGCCACCTTGTaGGCCACCGAGGATGGCAAC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRSWATL*ATEDGN
Trigger: GTTGCCATCCTCGGTGGCCCACAAGGTGGCCCAGCT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCTCGCCCTCGGGGCTaGACAGGCGGCAGGCCCCTA +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPRPRG*TGGRPL
Trigger: TAGGGGCCTGCCGCCTGTCCAGCCCCGAGGGCGAGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGCGCCCGCTCCAGCTTaGCTCCCACCTTGGTCTTTA +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGAPAPA*LPPWSL
Trigger: TAAAGACCAAGGTGGGAGCCAAGCTGGAGCGGGCGC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
63% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGACAGGAAGCAGCGCTaGGCGTGGGTGTGCGCGTGG +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAADRKQR*AWVCAW
Trigger: CCACGCGCACACCCACGCCCAGCGCTGCTTCCTGTC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATGCTACCACTGGGGCTaGCCCCTGCACCTGCACCAG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGCYHWG*PLHLHQ
Trigger: CTGGTGCAGGTGCAGGGGCCAGCCCCAGTGGTAGCA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGTCAGCCAGCTCACTaGGCAGGGCAATCCCATGAA +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGQPAH*AGQSHE
Trigger: TTCATGGGATTGCCCTGCTCAGTGAGCTGGCTGACC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACCGTGCAGGGCTCCGTaGGCTCTCCTCTCTCTCGTG +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAPCRAP*ALLSLV
Trigger: CACGAGAGAGAGGAGAGCTCACGGAGCCCTGCACGG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACGCTCCGATAGCAAATaGGGCGGCGGCGCGAAGTCT +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGRSDSK*GGGAKS
Trigger: AGACTTCGCGCCGCCGCCGCATTTGCTATCGGAGCG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGTGAGGCAGCCTCGATaGGGTCCCGGCTGCAGGACC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRVRQPR*GPGCRT
Trigger: GGTCCTGCAGCCGGGACCGCATCGAGGCTGCCTCAC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGTCGCCGCTCGCCCTTaGCCTCAGCTTTTAGGTGGG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGVAARP*PQLLGG
Trigger: CCCACCTAAAAGCTGAGGGCAAGGGCGAGCGGCGAC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGGGCCTCATGCTCCCTaGTGCGGGCACAGTCGGGTC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRGPHAP*CGHSRV
Trigger: GACCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAATGCCCACGGGTGGCTaGCTCACCTCCCCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVMPTGG*LTSPSP
Trigger: TGGAGACGGGGAGGTGAGGCAGCCACCCGTGGGCAT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGTGTGTGGCCCGATGTTaGTGCTGCTGCTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGCVARC*CCCCCC
Trigger: GCAGCAACAGCAGCAGCAGCAACATCGGGCCACACA...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATGGCGGAGGAGGGGGTaGCCTTGGCCATGGGGGTTA +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVWRRRG*PWPWGL
Trigger: TAACCCCCATGGCCAAGGGCACCCCCTCCTCCGCCA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCAAAGGGGGCTGTGGTaGCCCCTGATCTACAGTCCT +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGQRGLW*PLIYSP
Trigger: AGGACTGTAGATCAGGGGGCACCACAGCCCCCTTTG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATGGTCATGCCTGCGCTaGAGGCGAGCCAGCTCCCGT +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVWSCLR*RRASSR
Trigger: ACGGGAGCTGGCTCGCCTGCAGCGCAGGCATGACCA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCTTCTTCTTGCCTGGTaGACCCGGGGGCCGCCGCCC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGLLLAW*TRGPPP
Trigger: GGGCGGCGGCCCCCGGGTGCACCAGGCAAGAAGAAG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATCGCTGGGCGTGGGTGTaGGCGTGGGGGCTGCTACCC +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHRWAWV*AWGLLP
Trigger: GGGTAGCAGCCCCCACGCGCACACCCACGCCCAGCG...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGCTGGCCCCTGCACCTaGACCAGCCACCCCAGCCCT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWAGPCT*TSHPSP
Trigger: AGGGCTGGGGTGGCTGGTGCAGGTGCAGGGGCCAGC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCAGGACCCGATGGGATaGGCAGGGGTGGCTCGGGGC +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWQDPMG*AGVARG
Trigger: GCCCCGAGCCACCCCTGCCCATCCCATCGGGTCCTG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGCTGAGGGGCGGGGGTaGCCCGGTAGGCAGGCCAGA +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSAEGRG*PGRQAR
Trigger: TCTGGCCTGCCTACCGGGCCACCCCCGCCCCTCAGC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGGGGAAAGAGCCCGCTaGGCCTGTGCTGAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWGERAR*ACAEGR
Trigger: CCGCCCCTCAGCACAGGCCCAGCGGGCTCTTTCCCC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
62% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCAGAAGGCACAAAGGTaGGCCCGCTGGCCTTTAGGT +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGQKAQR*ARWPLG
Trigger: ACCTAAAGGCCAGCGGGCCCACCTTTGTGCCTTCTG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCATGGTCGGTGGCCATaGCCGCATCCAGGTGCCGGT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGHGRWP*PHPGAG
Trigger: ACCGGCACCTGGATGCGGCCATGGCCACCGACCATG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTACATGGTCGGTGGCCATaGCCGCATCCAGGTGCCGGT +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVHGRWP*PHPGAG
Trigger: ACCGGCACCTGGATGCGGCCATGGCCACCGACCATG...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACTCCCCGTCTCCATGTaGGGCCTCATGCTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLPVSM*GLMLPA
Trigger: AGCAGGGAGCATGAGGCCCCACATGGAGACGGGGAG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCATCCAGGTCTAGCGCATaGCTGGCACGTGGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKASRSSA*LARGPP
Trigger: TGGAGGACCACGTGCCAGCCATGCGCTAGACCTGGA...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGTGCGGGGCAGCCAGTaGGGATGGGCAGGATGGGGG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDVRGSQ*GWAGWG
Trigger: CCCCCATCCTGCCCATCCCCACTGGCTGCCCCGCAC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGCCCGGGCCCCATACATaGGGGGCCACAGGGAGGCCT +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLPGPHT*GATGRP
Trigger: AGGCCTCCCTGTGGCCCCCCATGTATGGGGCCCGGG...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCCGGGCCCCATACATaGGGGGCCACAGGGAGGCCT +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPGPHT*GATGRP
Trigger: AGGCCTCCCTGTGGCCCCCCATGTATGGGGCCCGGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGAGGAGGGGGTGCCCTTaGCCATGGGGGTTAAGGCAA +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRRRGCP*PWGLRQ
Trigger: TTGCCTTAACCCCCATGGCCAAGGGCACCCCCTCCT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGGCGCTGGGCCGAGGTaGTGGTGTGGGGCAACTCGC +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWGAGPR*WCGATR
Trigger: GCGAGTTGCCCCACACCACCACCTCGGCCCAGCGCC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTAAGTGCAGGGGGCGCTaGGCCGAGGTGGTGGTGTGG +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGKCRGR*AEVVVW
Trigger: CCACACCACCACCTCGGCCCAGCGCCCCCTGCACTT...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGAGCGCTTTGGGTGGGTaGCTATGGTTGGGAGTCCCC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRSALGG*LWLGVP
Trigger: GGGGACTCCCAACCATAGCCACCCACCCAAAGCGCT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGTCACTCTTCTGCCGCTaGGTCTCCAGGTCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRSLFCR*VSRSAS
Trigger: GCTGGCTGACCTGGAGACCCAGCGGCAGAAGAGTGA...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGTGTTTGCGCTTTCTTaGCCTGCCAGGCCCCCGCCG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVVFALS*PARPPP
Trigger: CGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACAC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCGCCCGCTCCAGCTTaGCTCCCACCTTGGTCTTTA +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAAPAPA*LPPWSL
Trigger: TAAAGACCAAGGTGGGAGCCAAGCTGGAGCGGGCGC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGGACAGGCTGGGTGTaGGGGCTTCGCTGGGCGGGT +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGTGWV*GLRWAG
Trigger: ACCCGCCCAGCGAAGCCCCCACACCCAGCCTGTCCC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
62% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGGGACAGGCTGGGTGTaGGGGCTTCGCTGGGCGGGT +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDGTGWV*GLRWAG
Trigger: ACCCGCCCAGCGAAGCCCCCACACCCAGCCTGTCCC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGCCCTAAGCAGCTTGTaGGCTCCTCCGGGAAGGCCT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTALSSL*APPGRP
Trigger: AGGCCTTCCCGGAGGAGCCCACAAGCTGCTTAGGGC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGAGGTCGCCCCAGCTTaGGTCCGAAGTCCTTGTCGC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTEVAPA*VRSPCR
Trigger: GCGACAAGGACTTCGGACCCAAGCTGGGGCGACCTC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGCCGCTTCCCCAGCTTaGTCTCCTCTGGGTGGTAGA +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRAASPA*SPLGGR
Trigger: TCTACCACCCAGAGGAGACCAAGCTGGGGAAGCGGC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 72 bp TTCTGGCCCAGACAGGGAGCTGGACCAGCTGCACCATaGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCTGT +
Preference number: 4 (lower is better)
Translates to: FWPRQGAGPAAP*EALQLLGEGSC
Trigger: ACAGCTGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGCCAGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGTGTGCCGACGCTGCTaGGCCCAGGCTGCTGGTGAG +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWVCRRC*AQAAGE
Trigger: CTCACCAGCAGCCTGGGCTCAGCAGCGTCGGCACAC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGGACGCAGCTGGCTTTaGGGCTGCCCAGGCCCACGA +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDGRSWL*GCPGPR
Trigger: TCGTGGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATCCAGGGCAGCTGCTTaGAGGGTGGATCCGGGCAAA +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTSRAAA*RVDPGK
Trigger: TTTGCCCGGATCCACCCTTCAAGCAGCTGCCCTGGA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGAGGGTCTGTCAGGCTaGTGTCAGGCAGGTCTCCTA +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKREGLSG*CQAGLL
Trigger: TAGGAGACCTGCCTGACATCAGCCTGACAGACCCTC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTAATCCCATGAATCCCTaGGCTATGCGGCAGAGGAGC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPNPMNP*AMRQRS
Trigger: GCTCCTCTGCCGCATAGCTCAGGGATTCATGGGATT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGACCACGGAGGAAGGTaGGGGTCCCAGCACTGCCAC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRDHGGR*GSQHCH
Trigger: GTGGCAGTGCTGGGACCCTCACCTTCCTCCGTGGTC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTGACCACGGAGGAAGGTaGGGGTCCCAGCACTGCCAC +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGDHGGR*GSQHCH
Trigger: GTGGCAGTGCTGGGACCCTCACCTTCCTCCGTGGTC...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCTGTACACTGGATCTTaGAGTCCGGAGGCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRLYTGS*SPEAAA
Trigger: GGCTGCTGCCTCCGGACTTCAAGATCCAGTGTACAG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGGCCTCCTTGCGCTTaGACTTGGATTTGCTACCAC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGPPCA*TWICYH
Trigger: GTGGTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCCGGGGTGCAGGGCCTaGCTCCTTGCAGGGCCCCTC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAPGCRA*LLAGPL
Trigger: GAGGGGCCCTGCAAGGAGGCAGGCCCTGCACCCCGG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGAGGCTCCACGGGGCCTaGCACCTCCTTGGCACAGCG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGRLHGA*HLLGTA
Trigger: CGCTGTGCCAAGGAGGTGGCAGGCCCCGTGGAGCCT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCACGGGAGACTTTGTCCTaGAGAGGGCAGAGCCCATCT +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKARETLS*RGQSPS
Trigger: AGATGGGCTCTGCCCTCTGCAGGACAAAGTCTCCCG...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGATGGCCGCATCCAGGTaGCGGTCCTTTCCATCACCT +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRMAASR*RSFPSP
Trigger: AGGTGATGGAAAGGACCGGCACCTGGATGCGGCCAT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGGAGACTCCATAGGGTaGACCATGGTCGGTGGCCAT +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAGDSIG*TMVGGH
Trigger: ATGGCCACCGACCATGGTGCACCCTATGGAGTCTCC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGGAGCCACCAAGTGCTaGTGGTGCCGGATCCTGGCT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGGATKC*WCRILA
Trigger: AGCCAGGATCCGGCACCAGCAGCACTTGGTGGCTCC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGGAAACTTGGCTTCCTaGTGGACGCAGCTGGCTTTG +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGGNLAS*WTQLAL
Trigger: CAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
61% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACCTCATGCTCCCTGCTaGGGGCACAGTCGGGTCTTT +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGPHAPC*GHSRVF
Trigger: AAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAGG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGGGCCTCATGCTCCCTaGTGCGGGCACAGTCGGGTC +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLGPHAP*CGHSRV
Trigger: GACCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGCCTGGCCAAGGCCACTaGGATGCCCACGGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLPGQGH*DAHGWL
Trigger: CAGCCACCCGTGGGCATCGCAGTGGCCTTGGCCAGG...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGCCGACCGTGTCCTTCTaGCTGGCCAAGGCCACTGCG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRPTVSF*LAKATA
Trigger: CGCAGTGGCCTTGGCCAGGCAGAAGGACACGGTCGG...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGGGGCGGCCCTGCCCTaGCGCCCACTGTTGGTATTG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDGAALP*RPLLVL
Trigger: CAATACCAACAGTGGGCGGCAGGGCAGGGCCGCCCC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGGTCTCCAGGGCAGCTaGTTGAAGGGTGGATCCGGG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVGLQGS*LKGGSG
Trigger: CCCGGATCCACCCTTCAAGCAGCTGCCCTGGAGACC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGAGGAGGGACTGCGGGTaGGGGGCAGCCAGTGGGGAT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWRRDCG*GAASGD
Trigger: ATCCCCACTGGCTGCCCCGCACCCGCAGTCCCTCCT...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGACCAACTGCGTGGCTaGATCTTGGGGGAGGGGGAA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGDQLRG*ILGEGE
Trigger: TTCCCCCTCCCCCAAGATGCAGCCACGCAGTTGGTC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGCCAGTGTGGCCAGGTaGTGCAGGTTGAAGGCCAGC +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGASVAR*CRLKAS
Trigger: GCTGGCCTTCAACCTGCAGCACCTGGCCACACTGGC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGCTCTGCTAGCTGCATaGGCATCTCCACTTCCTGTG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPALLAA*ASPLPV
Trigger: CACAGGAAGTGGAGATGCGCATGCAGCTAGCAGAGC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGGCCACAGCTCTTCTTaGACCGCACCTTCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGGHSSS*TAPSPR
Trigger: CCTCGGAGAAGGTGCGGTGCAAGAAGAGCTGTGGCC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTATTTGTGCATCTCCCTaGCACTGTCCCCATCGGGGT +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPICASP*HCPHRG
Trigger: ACCCCGATGGGGACAGTGGCAGGGAGATGCACAAAT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGGCTCTCTGGGAGCTaGCTCTGTCCCCAGGAGTGC +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGRLSGS*LCPQEC
Trigger: GCACTCCTGGGGACAGAGGCAGCTCCCAGAGAGCCT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCTTCTTCTTGCCTGGTaGACCCGGGGGCCGCCGCCC +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSLLLAW*TRGPPP
Trigger: GGGCGGCGGCCCCCGGGTGCACCAGGCAAGAAGAAG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGGCGGCGCTCTGCTCTaGGCTGAGCTGTACACCGGC +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWGGALL*AELYTG
Trigger: GCCGGTGTACAGCTCAGCGCAGAGCAGAGCGCCGCC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGATGGTGCAGGACCGTaGCAGGGCGGCGCTCTGCTC +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLDGAGP*QGGALL
Trigger: GAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTGGTCCTCCGGCAGCTaGTGGACACCAACAGGGCTG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGWSSGS*WTPTGL
Trigger: CAGCCCTGTTGGTGTCCAGCAGCTGCCGGAGGACCA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTGCCTCCTGCACAGCTaGCCAGGGAGGCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGCLLHS*PGRPCP
Trigger: TGGGCAAGGCCTCCCTGGCCAGCTGTGCAGGAGGCA...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGGGAAAGAGCCCGCTaGGCCTGTGCTGAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGERAR*ACAEGR
Trigger: CCGCCCCTCAGCACAGGCCCAGCGGGCTCTTTCCCC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCTTTCAGCCGGGGGTaGAGGGCCGCCTCAAAGCCC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPFSRG*RAASKP
Trigger: GGGCTTTGAGGCGGCCCTCCACCCCCGGCTGAAAGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGTGGGTCTTGGTGATTaGACCGGGCACAGTCCTGTG +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRVGLGD*TGHSPV
Trigger: CACAGGACTGTGCCCGGTCCAATCACCAAGACCCAC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCTCCCCGTCTCCATGTaGGGCCTCATGCTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGLPVSM*GLMLPA
Trigger: AGCAGGGAGCATGAGGCCCCACATGGAGACGGGGAG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGAAGTGCAGGGGGCGCTaGGCCGAGGTGGTGGTGTGG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGKCRGR*AEVVVW
Trigger: CCACACCACCACCTCGGCCCAGCGCCCCCTGCACTT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGGTCTGGTTCCAGCGTaGTCAGGTTGGTTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGGLVPA*SGWFQP
Trigger: GGGCTGGAACCAACCTGACCACGCTGGAACCAGACC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGATCCAGGCCAGCTGTaGGGTTCAATCCTGGAGTCA +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPDPGQL*GSILES
Trigger: TGACTCCAGGATTGAACCCCACAGCTGGCCTGGATC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGATCCAGGCCAGCTGTaGGGTTCAATCCTGGAGTCA +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGDPGQL*GSILES
Trigger: TGACTCCAGGATTGAACCCCACAGCTGGCCTGGATC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
61% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCTCTTCTAAGTTCCTaGGGCTGCATGGGGGTGGCT +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAALLSS*GCMGVA
Trigger: AGCCACCCCCATGCAGCCCCAGGAACTTAGAAGAGC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATGGCAAGGTCCTGGGTaGCATCCCTGGCCCTTGAGA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGWQGPG*HPWPLR
Trigger: TCTCAAGGGCCAGGGATGCCACCCAGGACCTTGCCA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACTCTCCTCTCTCTCGTaGTCATGCCTGCGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLSSLS*SCLRCR
Trigger: CCTGCAGCGCAGGCATGACCACGAGAGAGAGGAGAG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACCTCGCCCTCGGGGCTaGACAGGCGGCAGGCCCCTA +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGPRPRG*TGGRPL
Trigger: TAGGGGCCTGCCGCCTGTCCAGCCCCGAGGGCGAGG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGCGCCCGCTCCAGCTTaGCTCCCACCTTGGTCTTTA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGAPAPA*LPPWSL
Trigger: TAAAGACCAAGGTGGGAGCCAAGCTGGAGCGGGCGC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGGCCTTCTTCTTGCCTaGTGCACCCGGGGGCCGCCG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSGLLLA*CTRGPP
Trigger: CGGCGGCCCCCGGGTGCACCAGGCAAGAAGAAGGCC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATGCTCTTTCCCAGGATaGCCTTGGCGTTGCGGGCTG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGCSFPG*PWRCGL
Trigger: CAGCCCGCAACGCCAAGGCCATCCTGGGAAAGAGCA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGCTTCGCTGGGCGGGTaGCCCTCATTGGCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTASLGG*PSLAAF
Trigger: AAAAGCAGCCAATGAGGGCCACCCGCCCAGCGAAGC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGGTCTGAGGCCCCCGTaGGGGACTTGGCACCTGAGG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLGLRPP*GTWHLR
Trigger: CCTCAGGTGCCAAGTCCCCCACGGGGGCCTCAGACC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGCCCTAAGCAGCTTGTaGGCTCCTCCGGGAAGGCCT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGALSSL*APPGRP
Trigger: AGGCCTTCCCGGAGGAGCCCACAAGCTGCTTAGGGC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCATGCCTCGTCTCTGCGTaGGGTTTCCTGACCACTTCC +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKACLVSA*GFLTTS
Trigger: GGAAGTGGTCAGGAAACCCCACGCAGAGACGAGGCA...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 72 bp ATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCTGTaGCCCTGGAGGATAAGGAAGGGGCCGAGAGCTGGT +
Preference number: 4 (lower is better)
Translates to: IGSPAALGGRQL*PWRIRKGPRAG
Trigger: ACCAGCTCTCGGCCCCTTCCTTATCCTCCAGGGCAACAGCTGCCTTCCCCCAAGAGCTGCAGGGCTTCCAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGTTGCTGTTTCCATGGTaGTCCAAGTGGCTCACGGGT +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGLLFPW*SKWLTG
Trigger: ACCCGTGAGCCACTTGGATCACCATGGAAACAGCAA...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGACGCAGCTGGCTTTaGGGCTGCCCAGGCCCACGA +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGRSWL*GCPGPR
Trigger: TCGTGGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACCTCCTCGCACGCCCGTaGCCTCTCCTCTTCGCTCTC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDLLARP*PLLFAL
Trigger: GAGAGCGAAGAGGAGAGGTCACGGGCGTGCGAGGAG...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATCCAGGGCAGCTGCTTaGAGGGTGGATCCGGGCAAA +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAASRAAA*RVDPGK
Trigger: TTTGCCCGGATCCACCCTTCAAGCAGCTGCCCTGGA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAAGCAGGGCAATCCCATaGATCCCTGAGCTATGCGGC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTSRAIP*IPELCG
Trigger: GCCGCATAGCTCAGGGATTCATGGGATTGCCCTGCT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAAGCAGGGCAATCCCATaGATCCCTGAGCTATGCGGC +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGSRAIP*IPELCG
Trigger: GCCGCATAGCTCAGGGATTCATGGGATTGCCCTGCT...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCGTGCAGGGCTCCGTaGGCTCTCCTCTCTCTCGTG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPCRAP*ALLSLV
Trigger: CACGAGAGAGAGGAGAGCTCACGGAGCCCTGCACGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGCAGCCCCTTGCTCTTaGCCTTTGGCTTCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVAAPCS*PLASAG
Trigger: CCCAGCTGAAGCCAAAGGTCAAGAGCAAGGGGCTGC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGACCACGGAGGAAGGTaGGGGTCCCAGCACTGCCAC +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLDHGGR*GSQHCH
Trigger: GTGGCAGTGCTGGGACCCTCACCTTCCTCCGTGGTC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTGCGGGTGGCTCTCTTaGGGCGCTCACTGGCAAGTT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGCGWLS*GAHWQV
Trigger: AACTTGCCAGTGAGCGCCTCAAGAGAGCCACCCGCA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTACCTGGCCCTGCTTGCTaGCAGCCTCTCTCTTCACCT +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVPGPAC*QPLSSP
Trigger: AGGTGAAGAGAGAGGCTGTCAGCAAGCAGGGCCAGG...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACCTGGCCCTGCTTGCTaGCAGCCTCTCTCTTCACCT +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAPGPAC*QPLSSP
Trigger: AGGTGAAGAGAGAGGCTGTCAGCAAGCAGGGCCAGG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACTGTACACTGGATCTTaGAGTCCGGAGGCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLYTGS*SPEAAA
Trigger: GGCTGCTGCCTCCGGACTTCAAGATCCAGTGTACAG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGCTGTGGGGGCAGGTTaGGCAGGTAGAAGTTATCTT +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPAVGAG*AGRSYL
Trigger: AAGATAACTTCTACCTGCGCAACCTGCCCCCACAGC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTACCATCTGGGCCTGCATaGAGCTGCAGGCAGGGGAAA +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVPSGPA*SCRQGK
Trigger: TTTCCCCTGCCTGCAGCTGCATGCAGGCCCAGATGG...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGTCGCCGCTCGCCCTTaGCCTCAGCTTTTAGGTGGG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRVAARP*PQLLGG
Trigger: CCCACCTAAAAGCTGAGGGCAAGGGCGAGCGGCGAC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAAGGTGGGGGCGGCCCTaGCCTGCCGCCCACTGTTGG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIRWGRP*PAAHCW
Trigger: CCAACAGTGGGCGGCAGGGCAGGGCCGCCCCCACCT...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAAGGTGGGGGCGGCCCTaGCCTGCCGCCCACTGTTGG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPRWGRP*PAAHCW
Trigger: CCAACAGTGGGCGGCAGGGCAGGGCCGCCCCCACCT...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTCCACAAGGAGGGACTaGGGGTGCGGGGCAGCCAGT +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDSTRRD*GCGAAS
Trigger: ACTGGCTGCCCCGCACCCGCAGTCCCTCCTTGTGGA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGGGGTAGGTTCTGGTaGAGGGCGGGGTGTCCGAGA +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGGRFW*RAGCPR
Trigger: TCTCGGACACCCCGCCCTGCACCAGAACCTACCCCC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
60% GC, longest homopolymer 9 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACTGCTGCTGCTGCAGTaGATAGAGCTCTTGCTGCCG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGLLLLQ*IELLLP
Trigger: CGGCAGCAAGAGCTCTATGCACTGCAGCAGCAGCAG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATGTGTGGCCCGATGTTaGTGCTGCTGCTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGCVARC*CCCCCC
Trigger: GCAGCAACAGCAGCAGCAGCAACATCGGGCCACACA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATGGAGGTCAGAGGAGTaGACGTCTGAAGGGAGGGAG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTWRSEE*TSEGRE
Trigger: CTCCCTCCCTTCAGACGTGCACTCCTCTGACCTCCA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATCAGCAGCTGGGGCCTaGAGTGAAGTGACTGGGCTG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVSAAGA*SEVTGL
Trigger: CAGCCCAGTCACTTCACTGCAGGCCCCAGCTGCTGA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTGCGCTTTCTTGGCCTaGCAGGCCCCCGCCGTGCAG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSCAFLA*QAPAVQ
Trigger: CTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTTGGGCTTGGAATTTGTaGATCTCCCTGCCACTGTCC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPWAWNL*ISLPLS
Trigger: GGACAGTGGCAGGGAGATGCACAAATTCCAAGCCCA...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGCTCACTGGCAAGTTTaGTGCCCTCCTCTCGGCAGG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVAHWQV*CPPLGR
Trigger: CCTGCCGAGAGGAGGGCAGCAAACTTGCCAGTGAGC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAACGGGCAGTCCGTCCTaGAGGTCTTCCTTGTGGATG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTTGSPS*RSSLWM
Trigger: CATCCACAAGGAAGACCTGCAGGACGGACTGCCCGT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATCAAGAACCGCCTCCTaGAGCAGCTGTTCCAGCGAG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGSRTAS*SSCSSE
Trigger: CTCGCTGGAACAGCTGCTGCAGGAGGCGGTTCTTGA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAGTACCCCCGGCCCTTTaGCACCTGCCGCCGCCGCTG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIVPPAL*HLPPPL
Trigger: CAGCGGCGGCGGCAGGTGGCAAAGGGCCGGGGGTAC...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACCTCCCGGCCTTTTCTaGTTCAGCCCGTTCAGCCTT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTPPGLF*FSPFSL
Trigger: AAGGCTGAACGGGCTGAAGCAGAAAAGGCCGGGAGG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCGGGTGAGACAGGTCTaGAGCAGCAGGGCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWRVRQV*SSRAGS
Trigger: GGACCCTGCCCTGCTGCTGCAGACCTGTCTCACCCG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCGGGTGAGACAGGTCTaGAGCAGCAGGGCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGRVRQV*SSRAGS
Trigger: GGACCCTGCCCTGCTGCTGCAGACCTGTCTCACCCG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACGCTGGGCGTGGGTGTaGGCGTGGGGGCTGCTACCC +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIRWAWV*AWGLLP
Trigger: GGGTAGCAGCCCCCACGCGCACACCCACGCCCAGCG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGGGGAAAGAGCCCGCTaGGCCTGTGCTGAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGGERAR*ACAEGR
Trigger: CCGCCCCTCAGCACAGGCCCAGCGGGCTCTTTCCCC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCATGGTCGGTGGCCATaGCCGCATCCAGGTGCCGGT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWHGRWP*PHPGAG
Trigger: ACCGGCACCTGGATGCGGCCATGGCCACCGACCATG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGTGGGTCTTGGTGATTaGACCGGGCACAGTCCTGTG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTVGLGD*TGHSPV
Trigger: CACAGGACTGTGCCCGGTCCAATCACCAAGACCCAC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAAAGTGCAGCAGGCCTaGGTGGCCTTCCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGKVQQA*VAFPPS
Trigger: ACTGGGTGGGAAGGCCACCCAGGCCTGCTGCACTTT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGCTGGTGCCGGATCCTaGCTACCTTCTGTCCCACTG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVAGAGS*LPSVPL
Trigger: CAGTGGGACAGAAGGTAGCCAGGATCCGGCACCAGC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGCCACCAAGTGCTGCTaGTGCCGGATCCTGGCTACC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRATKCC*CRILAT
Trigger: GGTAGCCAGGATCCGGCACCAGCAGCACTTGGTGGC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGAGTGGGCAGCTCCTaGGACAGGAGGGCTGCCTGC +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGVGSS*DRRAAC
Trigger: GCAGGCAGCCCTCCTGTCCCAGGAGCTGCCCACTCC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACGCATGGCTGGCACGTaGTCCTCCAGCACCTTTGAA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGRMAGT*SSSTFE
Trigger: TTCAAAGGTGCTGGAGGACCACGTGCCAGCCATGCG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATCCAGGTCTAGCGCATaGCTGGCACGTGGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVSRSSA*LARGPP
Trigger: TGGAGGACCACGTGCCAGCCATGCGCTAGACCTGGA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGTGCGGGGCAGCCAGTaGGGATGGGCAGGATGGGGG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGVRGSQ*GWAGWG
Trigger: CCCCCATCCTGCCCATCCCCACTGGCTGCCCCGCAC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATTTGGGGTCTTCTCCTaGGCAGCTTCCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTFGVFS*AASSSS
Trigger: GGAGCTGGAGGAAGCTGCCCAGGAGAAGACCCCAAA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCAACTGGCTTGTGGGTaGACTTTGGGGTCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPQLACG*TLGSSP
Trigger: AGGAGAAGACCCCAAAGTCCACCCACAAGCCAGTTG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAAGGAGGGGGTGCCCTTaGCCATGGGGGTTAAGGCAA +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAARRGCP*PWGLRQ
Trigger: TTGCCTTAACCCCCATGGCCAAGGGCACCCCCTCCT...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTTGGTTCCAGCCCGCTaGCCCTCCTCACTCTTGTCC +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGLVPAR*PSSLLS
Trigger: GGACAAGAGTGAGGAGGGCCAGCGGGCTGGAACCAA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCCTGGGTGGCATCCCTaGCCCTTGAGAGCAGCCCAG +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWPGWHP*PLRAAQ
Trigger: CTGGGCTGCTCTCAAGGGCCAGGGATGCCACCCAGG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACTTGTCCAGGGCAGCTaGGCTCCCTGCTTCCTGTTC +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAALVQGS*APCFLF
Trigger: GAACAGGAAGCAGGGAGCCCAGCTGCCCTGGACAAG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGCGCTTTGGGTGGGTaGCTATGGTTGGGAGTCCCC +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGSALGG*LWLGVP
Trigger: GGGGACTCCCAACCATAGCCACCCACCCAAAGCGCT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATGGCAGCGCTTTGGGTaGGTGGCTATGGTTGGGAGT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTWQRFG*VAMVGS
Trigger: ACTCCCAACCATAGCCACCCACCCAAAGCGCTGCCA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATCACTCTTCTGCCGCTaGGTCTCCAGGTCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVSLFCR*VSRSAS
Trigger: GCTGGCTGACCTGGAGACCCAGCGGCAGAAGAGTGA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGAGCTGGGCCACCTTGTaGGCCACCGAGGATGGCAAC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRSWATL*ATEDGN
Trigger: GTTGCCATCCTCGGTGGCCCACAAGGTGGCCCAGCT...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGCTGGATGCGCCCACCTaGGGCAGCCTCTTTGCGCTG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLLDAPT*GSLFAL
Trigger: CAGCGCAAAGAGGCTGCCCCAGGTGGGCGCATCCAG...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCTGGATGCGCCCACCTaGGGCAGCCTCTTTGCGCTG +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWLDAPT*GSLFAL
Trigger: CAGCGCAAAGAGGCTGCCCCAGGTGGGCGCATCCAG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCACCTCGCCCTCGGGGCTaGACAGGCGGCAGGCCCCTA +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPPRPRG*TGGRPL
Trigger: TAGGGGCCTGCCGCCTGTCCAGCCCCGAGGGCGAGG...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGGACACCAACAGGGCTaGCGAGGGCTCTGTACACTG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGGHQQG*RGLCTL
Trigger: CAGTGTACAGAGCCCTCGCCAGCCCTGTTGGTGTCC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGGACACCAACAGGGCTaGCGAGGGCTCTGTACACTG +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAGHQQG*RGLCTL
Trigger: CAGTGTACAGAGCCCTCGCCAGCCCTGTTGGTGTCC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGCTTCGCTGGGCGGGTaGCCCTCATTGGCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGASLGG*PSLAAF
Trigger: AAAAGCAGCCAATGAGGGCCACCCGCCCAGCGAAGC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGTCTGAGGCCCCCGTaGGGGACTTGGCACCTGAGG +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGLRPP*GTWHLR
Trigger: CCTCAGGTGCCAAGTCCCCCACGGGGGCCTCAGACC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTGCTACCACTGGGGCTaGCCCCTGCACCTGCACCAG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDCYHWG*PLHLHQ
Trigger: CTGGTGCAGGTGCAGGGGCCAGCCCCAGTGGTAGCA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTGGATTTGCTACCACTaGGGCTGGCCCCTGCACCTG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGWICYH*GWPLHL
Trigger: CAGGTGCAGGGGCCAGCCCCAGTGGTAGCAAATCCA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATGGATTTGCTACCACTaGGGCTGGCCCCTGCACCTG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVWICYH*GWPLHL
Trigger: CAGGTGCAGGGGCCAGCCCCAGTGGTAGCAAATCCA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGTGTGCCGACGCTGCTaGGCCCAGGCTGCTGGTGAG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGVCRRC*AQAAGE
Trigger: CTCACCAGCAGCCTGGGCTCAGCAGCGTCGGCACAC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGTTGCTGTTTCCATGGTaGTCCAAGTGGCTCACGGGT +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRLLFPW*SKWLTG
Trigger: ACCCGTGAGCCACTTGGATCACCATGGAAACAGCAA...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTACCTCGGGGCCTGAACTaGGATACTCCAGGCCTTTCA +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVPRGLN*DTPGLS
Trigger: TGAAAGGCCTGGAGTATCTCAGTTCAGGCCCCGAGG...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACCGGGCACAGTCCTGTaGAGTGGGCAACTCAAAGTA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGPGTVL*SGQLKV
Trigger: TACTTTGAGTTGCCCACTTCACAGGACTGTGCCCGG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAAGAGGAGTGCACGTCTaGAGGGAGGGAGAGATCCAG +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAARGVHV*REGEIQ
Trigger: CTGGATCTCTCCCTCCCTTCAGACGTGCACTCCTCT...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGAGGGTCTGTCAGGCTaGTGTCAGGCAGGTCTCCTA +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGEGLSG*CQAGLL
Trigger: TAGGAGACCTGCCTGACATCAGCCTGACAGACCCTC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGGTCAGCCAGCTCACTaGGCAGGGCAATCCCATGAA +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAGQPAH*AGQSHE
Trigger: TTCATGGGATTGCCCTGCTCAGTGAGCTGGCTGACC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAAAGTCCGGGTGGGACTaGAAAGGGTGTCTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVKSGWD*KGCLCW
Trigger: CCAGCAGAGACACCCTTTTCAGTCCCACCCGGACTT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCCTGGCCCTGCTTGCTaGCAGCCTCTCTCTTCACCT +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGPGPAC*QPLSSP
Trigger: AGGTGAAGAGAGAGGCTGTCAGCAAGCAGGGCCAGG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGGGGTTGCAGGGTCCTaGCACTGCCCGCATACAGCA +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLGVAGS*HCPHTA
Trigger: TGCTGTATGCGGGCAGTGTCAGGACCCTGCAACCCC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGGTCTGAGCCACTGCTaGCCAGCTCAGCAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSGLSHC*PAQQGA
Trigger: AGCCCCCTGCTGAGCTGGTCAGCAGTGGCTCAGACC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGTCTGAGCCACTGCTaGCCAGCTCAGCAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGLSHC*PAQQGA
Trigger: AGCCCCCTGCTGAGCTGGTCAGCAGTGGCTCAGACC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCCATCTGGGCCTGCATaGAGCTGCAGGCAGGGGAAA +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGPSGPA*SCRQGK
Trigger: TTTCCCCTGCCTGCAGCTGCATGCAGGCCCAGATGG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGTCCTTTCCATCACCTaGCACGGCACAGGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRVLSIT*HGTGLC
Trigger: GCAGAGGCCTGTGCCGTGGCAGGTGATGGAAAGGAC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACCACTTTGTCTAAAGTaGAGCAGGCCTGGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGPLCLK*SRPGWP
Trigger: AGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGGAGCCACCAAGTGCTaGTGGTGCCGGATCCTGGCT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWGATKC*WCRILA
Trigger: AGCCAGGATCCGGCACCAGCAGCACTTGGTGGCTCC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGAGCCACCAAGTGCTaGTGGTGCCGGATCCTGGCT +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGATKC*WCRILA
Trigger: AGCCAGGATCCGGCACCAGCAGCACTTGGTGGCTCC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGGAAACTTGGCTTCCTaGTGGACGCAGCTGGCTTTG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTGNLAS*WTQLAL
Trigger: CAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGGGCGGCCCTGCCCTaGCGCCCACTGTTGGTATTG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGAALP*RPLLVL
Trigger: CAATACCAACAGTGGGCGGCAGGGCAGGGCCGCCCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTAGGAGGGACTGCGGGTaGGGGGCAGCCAGTGGGGAT +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLARRDCG*GAASGD
Trigger: ATCCCCACTGGCTGCCCCGCACCCGCAGTCCCTCCT...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGACCAACTGCGTGGCTaGATCTTGGGGGAGGGGGAA +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRDQLRG*ILGEGE
Trigger: TTCCCCCTCCCCCAAGATGCAGCCACGCAGTTGGTC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACTGCTGCTGCTGCAGTaGATAGAGCTCTTGCTGCCG +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAALLLLQ*IELLLP
Trigger: CGGCAGCAAGAGCTCTATGCACTGCAGCAGCAGCAG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGACAGCTCACTCTTCTaGCGCTGGGTCTCCAGGTCA +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVDSSLF*RWVSRS
Trigger: TGACCTGGAGACCCAGCGGCAGAAGAGTGAGCTGTC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTCAGCAGCTGGGGCCTaGAGTGAAGTGACTGGGCTG +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGSAAGA*SEVTGL
Trigger: CAGCCCAGTCACTTCACTGCAGGCCCCAGCTGCTGA...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGGCCACAGCTCTTCTTaGACCGCACCTTCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRGHSSS*TAPSPR
Trigger: CCTCGGAGAAGGTGCGGTGCAAGAAGAGCTGTGGCC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAATAGCTTCTTCTGGATaGGCCCACCTGGGGCAGCCT +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVIASSG*AHLGQP
Trigger: AGGCTGCCCCAGGTGGGCGCATCCAGAAGAAGCTAT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGATGTGCCACAGCCACTaGGGGTTGGGCTTGGAATTT +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRMCHSH*GLGLEF
Trigger: AAATTCCAAGCCCAACCCGCAGTGGCTGTGGCACAT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGAGGCTCTCTGGGAGCTaGCTCTGTCCCCAGGAGTGC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGRLSGS*LCPQEC
Trigger: GCACTCCTGGGGACAGAGGCAGCTCCCAGAGAGCCT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACCTTCGTCAGCTTCCTaGTCTTTCCCAGGATGGCCT +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGPSSAS*SFPGWP
Trigger: AGGCCATCCTGGGAAAGAGCAGGAAGCTGACGAAGG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAACGGGCAGTCCGTCCTaGAGGTCTTCCTTGTGGATG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVTGSPS*RSSLWM
Trigger: CATCCACAAGGAAGACCTGCAGGACGGACTGCCCGT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGACTCCCCGAAAATCTaGGGTACGCAGGAGCTTCAT +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRDSPKI*GTQELH
Trigger: ATGAAGCTCCTGCGTACCCCAGATTTTCGGGGAGTC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGCTGCAGGACCCGATaGGATGGGCAGGGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGCRTR*DGQGWL
Trigger: GAGCCACCCCTGCCCATCCCATCGGGTCCTGCAGCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTGCCTCCTGCACAGCTaGCCAGGGAGGCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHCLLHS*PGRPCP
Trigger: TGGGCAAGGCCTCCCTGGCCAGCTGTGCAGGAGGCA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCAGAAGGCACAAAGGTaGGCCCGCTGGCCTTTAGGT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGQKAQR*ARWPLG
Trigger: ACCTAAAGGCCAGCGGGCCCACCTTTGTGCCTTCTG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTGGCCTTCCCACCCAGTaGGTCTTGGTGATTGGACCG +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGGLPTQ*VLVIGP
Trigger: CGGTCCAATCACCAAGACCCACTGGGTGGGAAGGCC...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTGCGATGCCCACGGGTaGCTGCCTCACCTCCCCGTC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLACDAHG*LPHLPV
Trigger: GACGGGGAGGTGAGGCAGCCACCCGTGGGCATCGCA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACGCATGGCTGGCACGTaGTCCTCCAGCACCTTTGAA +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAARMAGT*SSSTFE
Trigger: TTCAAAGGTGCTGGAGGACCACGTGCCAGCCATGCG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGTGCGGGGCAGCCAGTaGGGATGGGCAGGATGGGGG +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLVRGSQ*GWAGWG
Trigger: CCCCCATCCTGCCCATCCCCACTGGCTGCCCCGCAC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTGCGTGGCTGCATCTTaGGGGAGGGGGAACACGGAG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDCVAAS*GRGNTE
Trigger: CTCCGTGTTCCCCCTCCCCCAAGATGCAGCCACGCA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGCTCCAGGGCCTGTGTaGCCCGATGTTGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLAPGPV*PDVAAA
Trigger: AGCAGCAGCAACATCGGGCCACACAGGCCCTGGAGC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGCTCCAGGGCCTGTGTaGCCCGATGTTGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWAPGPV*PDVAAA
Trigger: AGCAGCAGCAACATCGGGCCACACAGGCCCTGGAGC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGAAGGCAACTGGCTTGTaGGTGGACTTTGGGGTCTTC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRKATGL*VDFGVF
Trigger: GAAGACCCCAAAGTCCACCCACAAGCCAGTTGCCTT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCTTGGAGCCAGGCCCTaGGCTGCCAGTAGGGCAGAT +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGLGARP*AASRAD
Trigger: ATCTGCCCTACTGGCAGCCCAGGGCCTGGCTCCAAG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCCAGCGTGGTCAGGTTaGTTCCAGCCCGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSPAWSG*FQPAGP
Trigger: AGGGCCAGCGGGCTGGAACCAACCTGACCACGCTGG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTATAGTTTTGGGGTCTTaGAGGTCAGAGGAGTGCACG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPIVLGS*RSEECT
Trigger: CGTGCACTCCTCTGACCTCCAAGACCCCAAAACTAT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGATAGTTTTGGGGTCTTaGAGGTCAGAGGAGTGCACG +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGIVLGS*RSEECT
Trigger: CGTGCACTCCTCTGACCTCCAAGACCCCAAAACTAT...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAAGATTGGCAAGGTCCTaGGTGGCATCCCTGGCCCTT +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAARLARS*VASLAL
Trigger: AAGGGCCAGGGATGCCACCCAGGACCTTGCCAATCT...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGTCTTCTGCCTTCCCTaGTGGGAGTCCTCCCTCAAC +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAVFCLP*WESSLN
Trigger: GTTGAGGGAGGACTCCCACCAGGGAAGGCAGAAGAC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGTCTTCTGCCTTCCCTaGTGGGAGTCCTCCCTCAAC +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVVFCLP*WESSLN
Trigger: GTTGAGGGAGGACTCCCACCAGGGAAGGCAGAAGAC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGCTTGTCCAGGGCAGCTaGGCTCCCTGCTTCCTGTTC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRLVQGS*APCFLF
Trigger: GAACAGGAAGCAGGGAGCCCAGCTGCCCTGGACAAG...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATGGCAGCGCTTTGGGTaGGTGGCTATGGTTGGGAGT +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAWQRFG*VAMVGS
Trigger: ACTCCCAACCATAGCCACCCACCCAAAGCGCTGCCA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGCAAGGCATCCAAGCCTaGCAGCGCTTTGGGTGGGTG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRQGIQA*QRFGWV
Trigger: CACCCACCCAAAGCGCTGCCAGGCTTGGATGCCTTG...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCCTCATCTTCTTGCATaGACAGCTCACTCTTCTGCC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPPHLLA*TAHSSA
Trigger: GGCAGAAGAGTGAGCTGTCCATGCAAGAAGATGAGG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGTGTTTGCGCTTTCTTaGCCTGCCAGGCCCCCGCCG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSVFALS*PARPPP
Trigger: CGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACAC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACTTCCGCCTCAGGACTaGCTGCAACATGGCGCTCTT +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAALPPQD*LQHGAL
Trigger: AAGAGCGCCATGTTGCAGCCAGTCCTGAGGCGGAAG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTGCTCTTTCCCAGGATaGCCTTGGCGTTGCGGGCTG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRCSFPG*PWRCGL
Trigger: CAGCCCGCAACGCCAAGGCCATCCTGGGAAAGAGCA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGTACCGACTGGACTGTaGCTGGACATCAAGAACCGC +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGVPTGL*LDIKNR
Trigger: GCGGTTCTTGATGTCCAGCCACAGTCCAGTCGGTAC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACCCCCCGTGGGGGACTTaGCACCTGAGGTTAGGAGGT +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDPPWGT*HLRLGG
Trigger: ACCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGG...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
59% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCCCCCGTGGGGGACTTaGCACCTGAGGTTAGGAGGT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWPPWGT*HLRLGG
Trigger: ACCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACTGCGGCCTAGGAAGTaGTCTGAGGCCCCCGTGGGG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGLRPRK*SEAPVG
Trigger: CCCCACGGGGGCCTCAGACCACTTCCTAGGCCGCAG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGAGGTCACACCCTCATaGTCCAGCTTAACCAGAAAC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGEVTPS*SSLTRN
Trigger: GTTTCTGGTTAAGCTGGACCATGAGGGTGTGACCTC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACATCGGAGTAGGAGCTaGGGCAGTCACTATCACAGG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGHRSRS*GSHYHR
Trigger: CCTGTGATAGTGACTGCCCCAGCTCCTACTCCGATG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACATCGGAGTAGGAGCTaGGGCAGTCACTATCACAGG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTHRSRS*GSHYHR
Trigger: CCTGTGATAGTGACTGCCCCAGCTCCTACTCCGATG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGACAGGAAGCAGCGCTaGGCGTGGGTGTGCGCGTGG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGDRKQR*AWVCAW
Trigger: CCACGCGCACACCCACGCCCAGCGCTGCTTCCTGTC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGACAGGAAGCAGCGCTaGGCGTGGGTGTGCGCGTGG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLADRKQR*AWVCAW
Trigger: CCACGCGCACACCCACGCCCAGCGCTGCTTCCTGTC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATGCCTCGTCTCTGCGTaGGGTTTCCTGACCACTTCC +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAACLVSA*GFLTTS
Trigger: GGAAGTGGTCAGGAAACCCCACGCAGAGACGAGGCA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGTGTGCCGACGCTGCTaGGCCCAGGCTGCTGGTGAG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPVCRRC*AQAAGE
Trigger: CTCACCAGCAGCCTGGGCTCAGCAGCGTCGGCACAC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCCGGGCACAGTCCTGTaGAGTGGGCAACTCAAAGTA +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGPGTVL*SGQLKV
Trigger: TACTTTGAGTTGCCCACTTCACAGGACTGTGCCCGG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCTCCTCGCACGCCCGTaGCCTCTCCTCTTCGCTCTC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLALLARP*PLLFAL
Trigger: GAGAGCGAAGAGGAGAGGTCACGGGCGTGCGAGGAG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACACTTCAGCGAGTGTGTaGGGGGTGGTGTGGGGTGTG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDTSASV*GVVWGV
Trigger: CACACCCCACACCACCCCTCACACACTCGCTGAAGT...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGACTTCAGCGAGTGTGTaGGGGGTGGTGTGGGGTGTG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGTSASV*GVVWGV
Trigger: CACACCCCACACCACCCCTCACACACTCGCTGAAGT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGACTTCAGCGAGTGTGTaGGGGGTGGTGTGGGGTGTG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLTSASV*GVVWGV
Trigger: CACACCCCACACCACCCCTCACACACTCGCTGAAGT...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGAAGTCCGGGTGGGACTaGAAAGGGTGTCTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRKSGWD*KGCLCW
Trigger: CCAGCAGAGACACCCTTTTCAGTCCCACCCGGACTT...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGTGCGGGTGGCTCTCTTaGGGCGCTCACTGGCAAGTT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWCGWLS*GAHWQV
Trigger: AACTTGCCAGTGAGCGCCTCAAGAGAGCCACCCGCA...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCTGTACACTGGATCTTaGAGTCCGGAGGCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGLYTGS*SPEAAA
Trigger: GGCTGCTGCCTCCGGACTTCAAGATCCAGTGTACAG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGCTTTCCGCTTGGTCTaGGCCACTGCTGACCAGCTC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGAFRLV*ATADQL
Trigger: GAGCTGGTCAGCAGTGGCTCAGACCAAGCGGAAAGC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACAACTCGCCAGGCTGCTaGAGGAGTCAGCTCGGAAGC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDNSPGC*RSQLGS
Trigger: GCTTCCGAGCTGACTCCTTCAGCAGCCTGGCGAGTT...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGGTGGTAGAACCATTTaGCCTTCACCACCATGTTGC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRGGRTI*PSPPCC
Trigger: GCAACATGGTGGTGAAGGTCAAATGGTTCTACCACC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCGCTCCGATAGCAAATaGGGCGGCGGCGCGAAGTCT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSRSDSK*GGGAKS
Trigger: AGACTTCGCGCCGCCGCCGCATTTGCTATCGGAGCG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGTGAGGCAGCCTCGATaGGGTCCCGGCTGCAGGACC +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLVRQPR*GPGCRT
Trigger: GGTCCTGCAGCCGGGACCGCATCGAGGCTGCCTCAC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCCTCATGCTCCCTGCTaGGGGCACAGTCGGGTCTTT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWPHAPC*GHSRVF
Trigger: AAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAGG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAATGCCCACGGGTGGCTaGCTCACCTCCCCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGMPTGG*LTSPSP
Trigger: TGGAGACGGGGAGGTGAGGCAGCCACCCGTGGGCAT...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTATGCCCACGGGTGGCTaGCTCACCTCCCCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAMPTGG*LTSPSP
Trigger: TGGAGACGGGGAGGTGAGGCAGCCACCCGTGGGCAT...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGCCCGATGTTGCTGCTaGTGCTGTTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDARCCC*CCCCCC
Trigger: GCAGCAGCAGCAACAGCAGCAGCAGCAACATCGGGC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGTGGCCCGATGTTGCTaGTGCTGCTGTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDVARCC*CCCCCC
Trigger: GCAGCAGCAACAGCAGCAGCAGCAACATCGGGCCAC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGAGTGTGGCCAGGTGCTaGAGGTTGAAGGCCAGCACA +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRSVARC*RLKAST
Trigger: TGTGCTGGCCTTCAACCTGCAGCACCTGGCCACACT...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATTGCGTTGCAGGATTTaGATTCTGGGGGTGAGCCTG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLRCRI*ILGVSL
Trigger: CAGGCTCACCCCCAGAATGCAAATCCTGCAACGCAA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTGCAGCTCTGCTAGCTaGATGCGCATCTCCACTTCC +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGCSSAS*MRISTS
Trigger: GGAAGTGGAGATGCGCATGCAGCTAGCAGAGCTGCA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTATAGCTTCTTCTGGATaGGCCCACCTGGGGCAGCCT +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGIASSG*AHLGQP
Trigger: AGGCTGCCCCAGGTGGGCGCATCCAGAAGAAGCTAT...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACCTTCGTCAGCTTCCTaGTCTTTCCCAGGATGGCCT +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAPSSAS*SFPGWP
Trigger: AGGCCATCCTGGGAAAGAGCAGGAAGCTGACGAAGG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCAAGAACCGCCTCCTaGAGCAGCTGTTCCAGCGAG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRSRTAS*SSCSSE
Trigger: CTCGCTGGAACAGCTGCTGCAGGAGGCGGTTCTTGA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGCAGGGGGCTGCCTCTaGGGCCTAGGAAGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGAGGCL*GLGSGL
Trigger: CAGACCACTTCCTAGGCCGCAGAGGCAGCCCCCTGC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCAGCTCAGCAGGGGGCTaGCTCTGCGGCCTAGGAAGT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSSSAGG*LCGLGS
Trigger: ACTTCCTAGGCCGCAGAGGCAGCCCCCTGCTGAGCT...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAAATGAGGGCTGGGTGTaGGTAACTGGGGTTGCTAAG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGNEGWV*VTGVAK
Trigger: CTTAGCAACCCCAGTTACGCACACCCAGCCCTCATT...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAAATGAGGGCTGGGTGTaGGTAACTGGGGTTGCTAAG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTNEGWV*VTGVAK
Trigger: CTTAGCAACCCCAGTTACGCACACCCAGCCCTCATT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCGGGTGAGACAGGTCTaGAGCAGCAGGGCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLARVRQV*SSRAGS
Trigger: GGACCCTGCCCTGCTGCTGCAGACCTGTCTCACCCG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCACCTTTCAGCCGGGGGTaGAGGGCCGCCTCAAAGCCC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPPFSRG*RAASKP
Trigger: GGGCTTTGAGGCGGCCCTCCACCCCCGGCTGAAAGG...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGCCTTCCCACCCAGTaGGTCTTGGTGATTGGACCG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGLPTQ*VLVIGP
Trigger: CGGTCCAATCACCAAGACCCACTGGGTGGGAAGGCC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGCTGGTGCCGGATCCTaGCTACCTTCTGTCCCACTG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGAGAGS*LPSVPL
Trigger: CAGTGGGACAGAAGGTAGCCAGGATCCGGCACCAGC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGGAGTGGGCAGCTCCTaGGACAGGAGGGCTGCCTGC +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLGVGSS*DRRAAC
Trigger: GCAGGCAGCCCTCCTGTCCCAGGAGCTGCCCACTCC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACAACTGGCTTGTGGGTaGACTTTGGGGTCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTQLACG*TLGSSP
Trigger: AGGAGAAGACCCCAAAGTCCACCCACAAGCCAGTTG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGCTGGGCCGAGGTGGTaGTGTGGGGCAACTCGCAGG +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLAGPRW*CGATRR
Trigger: CCTGCGAGTTGCCCCACACCACCACCTCGGCCCAGC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCAAGTGCAGGGGGCGCTaGGCCGAGGTGGTGGTGTGG +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLKCRGR*AEVVVW
Trigger: CCACACCACCACCTCGGCCCAGCGCCCCCTGCACTT...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGGTCTGGTTCCAGCGTaGTCAGGTTGGTTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWGLVPA*SGWFQP
Trigger: GGGCTGGAACCAACCTGACCACGCTGGAACCAGACC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCAAGGCATCCAAGCCTaGCAGCGCTTTGGGTGGGTG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGQGIQA*QRFGWV
Trigger: CACCCACCCAAAGCGCTGCCAGGCTTGGATGCCTTG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGGCACGGAGGCTGCTaGGGTCTGAGGGTCTGTCAG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGHGGC*GLRVCQ
Trigger: CTGACAGACCCTCAGACCCCAGCAGCCTCCGTGCCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGGGCACGGAGGCTGCTaGGGTCTGAGGGTCTGTCAG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGGHGGC*GLRVCQ
Trigger: CTGACAGACCCTCAGACCCCAGCAGCCTCCGTGCCC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCTCTCCTCTCTCTCGTaGTCATGCCTGCGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGLSSLS*SCLRCR
Trigger: CCTGCAGCGCAGGCATGACCACGAGAGAGAGGAGAG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTTCCCAGGATGGCCTTaGCGTTGCGGGCTGACAGAG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDFPGWP*RCGLTE
Trigger: CTCTGTCAGCCCGCAACGCCAAGGCCATCCTGGGAA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGCTTCGCTGGGCGGGTaGCCCTCATTGGCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLASLGG*PSLAAF
Trigger: AAAAGCAGCCAATGAGGGCCACCCGCCCAGCGAAGC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGAGGTCGCCCCAGCTTaGGTCCGAAGTCCTTGTCGC +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSEVAPA*VRSPCR
Trigger: GCGACAAGGACTTCGGACCCAAGCTGGGGCGACCTC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTGGATTTGCTACCACTaGGGCTGGCCCCTGCACCTG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLWICYH*GWPLHL
Trigger: CAGGTGCAGGGGCCAGCCCCAGTGGTAGCAAATCCA...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAAAAGCTCTTTGGCTTTaGAGAAGCTCAGGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAKALWL*RSSGPP
Trigger: AGGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTT...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 72 bp CCAGAACCTCTGGCTCAGCCTCATGGCTATCCACACTaGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAA +
Preference number: 4 (lower is better)
Translates to: PEPLAQPHGYPH*RLSRGGGTPGK
Trigger: TTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGGATAGCCATGAGGCTGAGCCAGAGGTTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGCCTCGGGGCCTGAACTaGGATACTCCAGGCCTTTCA +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLPRGLN*DTPGLS
Trigger: TGAAAGGCCTGGAGTATCTCAGTTCAGGCCCCGAGG...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCCGGGCACAGTCCTGTaGAGTGGGCAACTCAAAGTA +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGPGTVL*SGQLKV
Trigger: TACTTTGAGTTGCCCACTTCACAGGACTGTGCCCGG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTCCAGGGCAGCTGCTTaGAGGGTGGATCCGGGCAAA +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHSRAAA*RVDPGK
Trigger: TTTGCCCGGATCCACCCTTCAAGCAGCTGCCCTGGA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAGGCATCCCTGGCCCTTaGGAGCAGCCCAGGCTCTTC +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIGIPGP*EQPRLF
Trigger: GAAGAGCCTGGGCTGCTCTCAAGGGCCAGGGATGCC...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCCGTGCAGGGCTCCGTaGGCTCTCCTCTCTCTCGTG +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLPCRAP*ALLSLV
Trigger: CACGAGAGAGAGGAGAGCTCACGGAGCCCTGCACGG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGAAGTCCGGGTGGGACTaGAAAGGGTGTCTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGKSGWD*KGCLCW
Trigger: CCAGCAGAGACACCCTTTTCAGTCCCACCCGGACTT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTGCGGGTGGCTCTCTTaGGGCGCTCACTGGCAAGTT +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHCGWLS*GAHWQV
Trigger: AACTTGCCAGTGAGCGCCTCAAGAGAGCCACCCGCA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGGGTTGCAGGGTCCTaGCACTGCCCGCATACAGCA +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGVAGS*HCPHTA
Trigger: TGCTGTATGCGGGCAGTGTCAGGACCCTGCAACCCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACCCGCTCCCTGCCCTCTaGTCCCTTGCTAACTTTCTC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDPLPAL*SLANFL
Trigger: GAGAAAGTTAGCAAGGGAGCAGAGGGCAGGGAGCGG...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGTCGCCGCTCGCCCTTaGCCTCAGCTTTTAGGTGGG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGVAARP*PQLLGG
Trigger: CCCACCTAAAAGCTGAGGGCAAGGGCGAGCGGCGAC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCCTCATGCTCCCTGCTaGGGGCACAGTCGGGTCTTT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSPHAPC*GHSRVF
Trigger: AAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAGG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCCGACCGTGTCCTTCTaGCTGGCCAAGGCCACTGCG +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLPTVSF*LAKATA
Trigger: CGCAGTGGCCTTGGCCAGGCAGAAGGACACGGTCGG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACCGACCGTGTCCTTCTaGCTGGCCAAGGCCACTGCG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIPTVSF*LAKATA
Trigger: CGCAGTGGCCTTGGCCAGGCAGAAGGACACGGTCGG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGTCTCCAGGGCAGCTaGTTGAAGGGTGGATCCGGG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGLQGS*LKGGSG
Trigger: CCCGGATCCACCCTTCAAGCAGCTGCCCTGGAGACC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCTGCTGCTGCTGCAGTaGATAGAGCTCTTGCTGCCG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGLLLLQ*IELLLP
Trigger: CGGCAGCAAGAGCTCTATGCACTGCAGCAGCAGCAG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGTGTGTGGCCCGATGTTaGTGCTGCTGCTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGCVARC*CCCCCC
Trigger: GCAGCAACAGCAGCAGCAGCAACATCGGGCCACACA...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGTGGAGGTCAGAGGAGTaGACGTCTGAAGGGAGGGAG +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWWRSEE*TSEGRE
Trigger: CTCCCTCCCTTCAGACGTGCACTCCTCTGACCTCCA...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGACAGCTCACTCTTCTaGCGCTGGGTCTCCAGGTCA +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLDSSLF*RWVSRS
Trigger: TGACCTGGAGACCCAGCGGCAGAAGAGTGAGCTGTC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGAGTGTGGCCAGGTGCTaGAGGTTGAAGGCCAGCACA +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWSVARC*RLKAST
Trigger: TGTGCTGGCCTTCAACCTGCAGCACCTGGCCACACT...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGCCAGTGTGGCCAGGTaGTGCAGGTTGAAGGCCAGC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAASVAR*CRLKAS
Trigger: GCTGGCCTTCAACCTGCAGCACCTGGCCACACTGGC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCAGGTGTCCTTGCGTTaGAGGATTTGCATTCTGGGG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGQVSLR*RICILG
Trigger: CCCCAGAATGCAAATCCTGCAACGCAAGGACACCTG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTACAGGTGTCCTTGCGTTaGAGGATTTGCATTCTGGGG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVQVSLR*RICILG
Trigger: CCCCAGAATGCAAATCCTGCAACGCAAGGACACCTG...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACAGCCTTGGCTTTCTTaGTGTCACTTCTGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTQPWLS*CHFWQA
Trigger: AGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGGCCACAGCTCTTCTTaGACCGCACCTTCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSGHSSS*TAPSPR
Trigger: CCTCGGAGAAGGTGCGGTGCAAGAAGAGCTGTGGCC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATGGGCTTGGAATTTGTaGATCTCCCTGCCACTGTCC +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAWAWNL*ISLPLS
Trigger: GGACAGTGGCAGGGAGATGCACAAATTCCAAGCCCA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAATGTGCCACAGCCACTaGGGGTTGGGCTTGGAATTT +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAMCHSH*GLGLEF
Trigger: AAATTCCAAGCCCAACCCGCAGTGGCTGTGGCACAT...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGCTCACTGGCAAGTTTaGTGCCCTCCTCTCGGCAGG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSAHWQV*CPPLGR
Trigger: CCTGCCGAGAGGAGGGCAGCAAACTTGCCAGTGAGC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGATGGCCTTGGCGTTaGGGGCTGACAGAGCGATGG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGWPWR*GLTERW
Trigger: CCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGACGGGCAGTCCGTCCTaGAGGTCTTCCTTGTGGATG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGTGSPS*RSSLWM
Trigger: CATCCACAAGGAAGACCTGCAGGACGGACTGCCCGT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATGGTCCTCCGGCAGCTaGTGGACACCAACAGGGCTG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGWSSGS*WTPTGL
Trigger: CAGCCCTGTTGGTGTCCAGCAGCTGCCGGAGGACCA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGCAGGGGGCTGCCTCTaGGGCCTAGGAAGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPAGGCL*GLGSGL
Trigger: CAGACCACTTCCTAGGCCGCAGAGGCAGCCCCCTGC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATACGCAGGAGCTTCATaGGAGTGGGAGAACCAGATC +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAYAGAS*EWENQI
Trigger: GATCTGGTTCTCCCACTCCCATGAAGCTCCTGCGTA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATACGCAGGAGCTTCATaGGAGTGGGAGAACCAGATC +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVYAGAS*EWENQI
Trigger: GATCTGGTTCTCCCACTCCCATGAAGCTCCTGCGTA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACAGGCCTCTGCTACTTaGAAAGAGCGGCTCTTGTCA +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAQASAT*KERLLS
Trigger: TGACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGTGGGTCTTGGTGATTaGACCGGGCACAGTCCTGTG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLVGLGD*TGHSPV
Trigger: CACAGGACTGTGCCCGGTCCAATCACCAAGACCCAC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCAGCAGGTTCTTCATaGCCGAGACCTCATCTGGCG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRSAGSS*PRPHLA
Trigger: CGCCAGATGAGGTCTCGGCCATGAAGAACCTGCTGA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCTCCCCGTCTCCATGTaGGGCCTCATGCTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLALPVSM*GLMLPA
Trigger: AGCAGGGAGCATGAGGCCCCACATGGAGACGGGGAG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTCCAGGTCTAGCGCATaGCTGGCACGTGGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSSRSSA*LARGPP
Trigger: TGGAGGACCACGTGCCAGCCATGCGCTAGACCTGGA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGGCCACAGGGAGGCCTaGTCCATAACTTCAGCGAGT +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLGHREA*SITSAS
Trigger: ACTCGCTGAAGTTATGGACCAGGCCTCCCTGTGGCC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGGCCACAGGGAGGCCTaGTCCATAACTTCAGCGAGT +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDGHREA*SITSAS
Trigger: ACTCGCTGAAGTTATGGACCAGGCCTCCCTGTGGCC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGCCACAGGGAGGCCTaGTCCATAACTTCAGCGAGT +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGHREA*SITSAS
Trigger: ACTCGCTGAAGTTATGGACCAGGCCTCCCTGTGGCC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGCTCCAGGGCCTGTGTaGCCCGATGTTGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGAPGPV*PDVAAA
Trigger: AGCAGCAGCAACATCGGGCCACACAGGCCCTGGAGC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAAAGGCAACTGGCTTGTaGGTGGACTTTGGGGTCTTC +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVKATGL*VDFGVF
Trigger: GAAGACCCCAAAGTCCACCCACAAGCCAGTTGCCTT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCTTGGAGCCAGGCCCTaGGCTGCCAGTAGGGCAGAT +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLALGARP*AASRAD
Trigger: ATCTGCCCTACTGGCAGCCCAGGGCCTGGCTCCAAG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTTGGTTCCAGCCCGCTaGCCCTCCTCACTCTTGTCC +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSLVPAR*PSSLLS
Trigger: GGACAAGAGTGAGGAGGGCCAGCGGGCTGGAACCAA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCTTGTCCAGGGCAGCTaGGCTCCCTGCTTCCTGTTC +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSLVQGS*APCFLF
Trigger: GAACAGGAAGCAGGGAGCCCAGCTGCCCTGGACAAG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTGTCCAGCCGGTCGATaGCAGCCTTCAGGGGACATA +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDCPAGR*QPSGDI
Trigger: TATGTCCCCTGAAGGCTGCCATCGACCGGCTGGACA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATCTCTCCTCTCTCTCGTaGTCATGCCTGCGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHLSSLS*SCLRCR
Trigger: CCTGCAGCGCAGGCATGACCACGAGAGAGAGGAGAG...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGTGTTTGCGCTTTCTTaGCCTGCCAGGCCCCCGCCG +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLVFALS*PARPPP
Trigger: CGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACAC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGTTGCACGAACAGCCTTaGCTTTCTTGCTGTCACTTC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRLHEQP*LSCCHF
Trigger: GAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAA...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACTGGATGCGCCCACCTaGGGCAGCCTCTTTGCGCTG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCILDAPT*GSLFAL
Trigger: CAGCGCAAAGAGGCTGCCCCAGGTGGGCGCATCCAG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAACTGCGGGTTGGGCTTaGAATTTGTGCATCTCCCTG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVTAGWA*NLCISL
Trigger: CAGGGAGATGCACAAATTCCAAGCCCAACCCGCAGT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAACAGCCACTGCGGGTTaGGCTTGGAATTTGTGCATC +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVTATAG*AWNLCI
Trigger: GATGCACAAATTCCAAGCCCAACCCGCAGTGGCTGT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGCTTGGCTCCCACCTTaGTCTTTACTGTTCGTCTCT +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGAWLPP*SLLFVS
Trigger: AGAGACGAACAGTAAAGACCAAGGTGGGAGCCAAGC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGCTTCCGCCTCAGGACTaGCTGCAACATGGCGCTCTT +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLLPPQD*LQHGAL
Trigger: AAGAGCGCCATGTTGCAGCCAGTCCTGAGGCGGAAG...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTTCCCAGGATGGCCTTaGCGTTGCGGGCTGACAGAG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSFPGWP*RCGLTE
Trigger: CTCTGTCAGCCCGCAACGCCAAGGCCATCCTGGGAA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGAGGTCACACCCTCATaGTCCAGCTTAACCAGAAAC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTEVTPS*SSLTRN
Trigger: GTTTCTGGTTAAGCTGGACCATGAGGGTGTGACCTC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATCCGAGAAAGCTCTTTaGCTTTGGAGAAGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGSEKAL*LWRSSG
Trigger: CCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGTGCCTCGTCTCTGCGTaGGGTTTCCTGACCACTTCC +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWCLVSA*GFLTTS
Trigger: GGAAGTGGTCAGGAAACCCCACGCAGAGACGAGGCA...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCTTCGTGGCAGGACTaGTACAGTGCGTTCTTCCCG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRSSWQD*YSAFFP
Trigger: CGGGAAGAACGCACTGTACCAGTCCTGCCACGAAGA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACAATCCCATGAATCCCTaGGCTATGCGGCAGAGGAGC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDNPMNP*AMRQRS
Trigger: GCTCCTCTGCCGCATAGCTCAGGGATTCATGGGATT...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATCTTGGTGCTTCCGTTaGGCTGGAAGAGGTTCTGTA +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAASWCFR*AGRGSV
Trigger: TACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTAACTCGCCAGGCTGCTaGAGGAGTCAGCTCGGAAGC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLANSPGC*RSQLGS
Trigger: GCTTCCGAGCTGACTCCTTCAGCAGCCTGGCGAGTT...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGGGCCTCCTTGCGCTTaGACTTGGATTTGCTACCAC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDGPPCA*TWICYH
Trigger: GTGGTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGGTGGTAGAACCATTTaGCCTTCACCACCATGTTGC +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAGGRTI*PSPPCC
Trigger: GCAACATGGTGGTGAAGGTCAAATGGTTCTACCACC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCGGGAGACTTTGTCCTaGAGAGGGCAGAGCCCATCT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSRETLS*RGQSPS
Trigger: AGATGGGCTCTGCCCTCTGCAGGACAAAGTCTCCCG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCACTTTGTCTAAAGTaGAGCAGGCCTGGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPLCLK*SRPGWP
Trigger: AGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGGTCTCCAGGGCAGCTaGTTGAAGGGTGGATCCGGG +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLGLQGS*LKGGSG
Trigger: CCCGGATCCACCCTTCAAGCAGCTGCCCTGGAGACC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCAAGATGACCAACTaGGTGGCTGCATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGKMTN*VAASWG
Trigger: CCCCCAAGATGCAGCCACGCAGTTGGTCATCTTGCC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGCCCGATGTTGCTGCTaGTGCTGTTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAARCCC*CCCCCC
Trigger: GCAGCAGCAGCAACAGCAGCAGCAGCAACATCGGGC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGTGGCCCGATGTTGCTaGTGCTGCTGTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAVARCC*CCCCCC
Trigger: GCAGCAGCAACAGCAGCAGCAGCAACATCGGGCCAC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTGGAGGTCAGAGGAGTaGACGTCTGAAGGGAGGGAG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSWRSEE*TSEGRE
Trigger: CTCCCTCCCTTCAGACGTGCACTCCTCTGACCTCCA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGACAGCTCACTCTTCTaGCGCTGGGTCTCCAGGTCA +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHDSSLF*RWVSRS
Trigger: TGACCTGGAGACCCAGCGGCAGAAGAGTGAGCTGTC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAACATCCTCATCTTCTTaGATGGACAGCTCACTCTTC +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKATSSSS*MDSSLF
Trigger: GAAGAGTGAGCTGTCCATGCAAGAAGATGAGGATGT...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTGCAGCTCTGCTAGCTaGATGCGCATCTCCACTTCC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDCSSAS*MRISTS
Trigger: GGAAGTGGAGATGCGCATGCAGCTAGCAGAGCTGCA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTATGTGCCACAGCCACTaGGGGTTGGGCTTGGAATTT +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGMCHSH*GLGLEF
Trigger: AAATTCCAAGCCCAACCCGCAGTGGCTGTGGCACAT...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGGCCAGTTTTCACCTTaGCCTTGGCCTTCTTCTTGC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRGQFSP*PWPSSC
Trigger: GCAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGCTCACTGGCAAGTTTaGTGCCCTCCTCTCGGCAGG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGAHWQV*CPPLGR
Trigger: CCTGCCGAGAGGAGGGCAGCAAACTTGCCAGTGAGC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTCAAGAACCGCCTCCTaGAGCAGCTGTTCCAGCGAG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSSRTAS*SSCSSE
Trigger: CTCGCTGGAACAGCTGCTGCAGGAGGCGGTTCTTGA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATTAGGAGGTCGACTTTaGCAGCTTTGTCTTTGCTGC +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGLGGRL*QLCLCC
Trigger: GCAGCAAAGACAAAGCTGGCAAAGTCGACCTCCTAA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAAGCTCAGCAGGGGGCTaGCTCTGCGGCCTAGGAAGT +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPSSAGG*LCGLGS
Trigger: ACTTCCTAGGCCGCAGAGGCAGCCCCCTGCTGAGCT...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGAATGAGGGCTGGGTGTaGGTAACTGGGGTTGCTAAG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRNEGWV*VTGVAK
Trigger: CTTAGCAACCCCAGTTACGCACACCCAGCCCTCATT...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAAAAGTGCAGCAGGCCTaGGTGGCCTTCCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGKVQQA*VAFPPS
Trigger: ACTGGGTGGGAAGGCCACCCAGGCCTGCTGCACTTT...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTGGGCCCTTAGTGGCTaGAAACTTGGCTTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDWALSG*KLGFLL
Trigger: CAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATGCGTGGCTGCATCTTaGGGGAGGGGGAACACGGAG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCICVAAS*GRGNTE
Trigger: CTCCGTGTTCCCCCTCCCCCAAGATGCAGCCACGCA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCATGCGTGGCTGCATCTTaGGGGAGGGGGAACACGGAG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPCVAAS*GRGNTE
Trigger: CTCCGTGTTCCCCCTCCCCCAAGATGCAGCCACGCA...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCTTGGAGCCAGGCCCTaGGCTGCCAGTAGGGCAGAT +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLLGARP*AASRAD
Trigger: ATCTGCCCTACTGGCAGCCCAGGGCCTGGCTCCAAG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGTCTGGTTCCAGCGTaGTCAGGTTGGTTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGLVPA*SGWFQP
Trigger: GGGCTGGAACCAACCTGACCACGCTGGAACCAGACC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGATCCAGGCCAGCTGTaGGGTTCAATCCTGGAGTCA +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGDPGQL*GSILES
Trigger: TGACTCCAGGATTGAACCCCACAGCTGGCCTGGATC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATGGCAAGGTCCTGGGTaGCATCCCTGGCCCTTGAGA +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGWQGPG*HPWPLR
Trigger: TCTCAAGGGCCAGGGATGCCACCCAGGACCTTGCCA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCAGGAGGGGGTAGATTaGCAAGGTCCTGGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSQEGVD*QGPGWH
Trigger: ATGCCACCCAGGACCTTGCCAATCTACCCCCTCCTG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATCACTCTTCTGCCGCTaGGTCTCCAGGTCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGSLFCR*VSRSAS
Trigger: GCTGGCTGACCTGGAGACCCAGCGGCAGAAGAGTGA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTGTCCAGCCGGTCGATaGCAGCCTTCAGGGGACATA +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHCPAGR*QPSGDI
Trigger: TATGTCCCCTGAAGGCTGCCATCGACCGGCTGGACA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGACTGCGGGTTGGGCTTaGAATTTGTGCATCTCCCTG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRTAGWA*NLCISL
Trigger: CAGGGAGATGCACAAATTCCAAGCCCAACCCGCAGT...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTGCAGGTCTTCCTTGTaGATGGTGCAGGACCGTGCC +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHCRSSL*MVQDRA
Trigger: GGCACGGTCCTGCACCATCCACAAGGAAGACCTGCA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGTACCGACTGGACTGTaGCTGGACATCAAGAACCGC +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLVPTGL*LDIKNR
Trigger: GCGGTTCTTGATGTCCAGCCACAGTCCAGTCGGTAC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGGACACCAACAGGGCTaGCGAGGGCTCTGTACACTG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGGHQQG*RGLCTL
Trigger: CAGTGTACAGAGCCCTCGCCAGCCCTGTTGGTGTCC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAAAGCTCTTTGGCTTTaGAGAAGCTCAGGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGKALWL*RSSGPP
Trigger: AGGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACCTTGCCTCGGACAATaGCCTTGTAGAATAGTTTCC +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGPCLGQ*PCRIVS
Trigger: GGAAACTATTCTACAAGGCCATTGTCCGAGGCAAGG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTCTTCGTGGCAGGACTaGTACAGTGCGTTCTTCCCG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLSSWQD*YSAFFP
Trigger: CGGGAAGAACGCACTGTACCAGTCCTGCCACGAAGA...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTCATTCTCATCTTCGTaGCAGGACTGGTACAGTGCG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGSFSSS*QDWYSA
Trigger: CGCACTGTACCAGTCCTGCCACGAAGATGAGAATGA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCCTTTCGTTCCTCGATaGTGGCCATGGAGGTGTCGT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSPFVPR*WPWRCR
Trigger: ACGACACCTCCATGGCCATCATCGAGGAACGAAAGG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGTCAGCCAGCTCACTaGGCAGGGCAATCCCATGAA +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGQPAH*AGQSHE
Trigger: TTCATGGGATTGCCCTGCTCAGTGAGCTGGCTGACC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCATTTGCATTCTGGGGGTaGGCCTGGGGCCTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPFAFWG*AWGLCL
Trigger: CAGACAGAGGCCCCAGGCTCACCCCCAGAATGCAAA...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATTTGCATTCTGGGGGTaGGCCTGGGGCCTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIFAFWG*AWGLCL
Trigger: CAGACAGAGGCCCCAGGCTCACCCCCAGAATGCAAA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGCTTTCCGCTTGGTCTaGGCCACTGCTGACCAGCTC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPAFRLV*ATADQL
Trigger: GAGCTGGTCAGCAGTGGCTCAGACCAAGCGGAAAGC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCTTGGTGCTTCCGTTaGGCTGGAAGAGGTTCTGTA +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRSWCFR*AGRGSV
Trigger: TACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGCTGTGGGGGCAGGTTaGGCAGGTAGAAGTTATCTT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWAVGAG*AGRSYL
Trigger: AAGATAACTTCTACCTGCGCAACCTGCCCCCACAGC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGTCCTTTCCATCACCTaGCACGGCACAGGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLVLSIT*HGTGLC
Trigger: GCAGAGGCCTGTGCCGTGGCAGGTGATGGAAAGGAC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATCCACTTTGTCTAAAGTaGAGCAGGCCTGGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHPLCLK*SRPGWP
Trigger: AGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGG...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAACCAAGTGCTGCTGGTaGCGGATCCTGGCTACCTTC +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGTKCCW*RILATF
Trigger: GAAGGTAGCCAGGATCCGGCACCAGCAGCACTTGGT...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCGACTAGGGCTTGGTTaGTGTATTTCAGCAGGTTCT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGRLGLG*CISAGS
Trigger: AGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGCAAGATGACCAACTaGGTGGCTGCATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGKMTN*VAASWG
Trigger: CCCCCAAGATGCAGCCACGCAGTTGGTCATCTTGCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACAAAGGGGGCTGTGGTaGCCCCTGATCTACAGTCCT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGQRGLW*PLIYSP
Trigger: AGGACTGTAGATCAGGGGGCACCACAGCCCCCTTTG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAACATCCTCATCTTCTTaGATGGACAGCTCACTCTTC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTTSSSS*MDSSLF
Trigger: GAAGAGTGAGCTGTCCATGCAAGAAGATGAGGATGT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATCAGCAGCTGGGGCCTaGAGTGAAGTGACTGGGCTG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCISAAGA*SEVTGL
Trigger: CAGCCCAGTCACTTCACTGCAGGCCCCAGCTGCTGA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGTGAGCTTGAGTGTTTaGGCTTTCTTGGCCTGCCAG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLVSLSV*AFLACQ
Trigger: CTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCAC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCATTTGTGCATCTCCCTaGCACTGTCCCCATCGGGGT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSICASP*HCPHRG
Trigger: ACCCCGATGGGGACAGTGGCAGGGAGATGCACAAAT...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGCCAGTTTTCACCTTaGCCTTGGCCTTCTTCTTGC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGQFSP*PWPSSC
Trigger: GCAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCAGCTTTGTCTTTGCTaGCAGATTTCTTCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGQLCLC*QISSQG
Trigger: CCCCTGGGAAGAAATCTGGCAGCAAAGACAAAGCTG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACCTCCCGGCCTTTTCTaGTTCAGCCCGTTCAGCCTT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGPPGLF*FSPFSL
Trigger: AAGGCTGAACGGGCTGAAGCAGAAAAGGCCGGGAGG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGACTCCCCGAAAATCTaGGGTACGCAGGAGCTTCAT +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGDSPKI*GTQELH
Trigger: ATGAAGCTCCTGCGTACCCCAGATTTTCGGGGAGTC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACAGAAGGCACAAAGGTaGGCCCGCTGGCCTTTAGGT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGQKAQR*ARWPLG
Trigger: ACCTAAAGGCCAGCGGGCCCACCTTTGTGCCTTCTG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCAAAGTGCAGCAGGCCTaGGTGGCCTTCCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLKVQQA*VAFPPS
Trigger: ACTGGGTGGGAAGGCCACCCAGGCCTGCTGCACTTT...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGCTGGTGCCGGATCCTaGCTACCTTCTGTCCCACTG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPAGAGS*LPSVPL
Trigger: CAGTGGGACAGAAGGTAGCCAGGATCCGGCACCAGC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTCAGCAGGTTCTTCATaGCCGAGACCTCATCTGGCG +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHSAGSS*PRPHLA
Trigger: CGCCAGATGAGGTCTCGGCCATGAAGAACCTGCTGA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTGGGCCCTTAGTGGCTaGAAACTTGGCTTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHWALSG*KLGFLL
Trigger: CAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACGCATGGCTGGCACGTaGTCCTCCAGCACCTTTGAA +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGRMAGT*SSSTFE
Trigger: TTCAAAGGTGCTGGAGGACCACGTGCCAGCCATGCG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGAAGGCAACTGGCTTGTaGGTGGACTTTGGGGTCTTC +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLKATGL*VDFGVF
Trigger: GAAGACCCCAAAGTCCACCCACAAGCCAGTTGCCTT...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATGGCAAGGTCCTGGGTaGCATCCCTGGCCCTTGAGA +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIWQGPG*HPWPLR
Trigger: TCTCAAGGGCCAGGGATGCCACCCAGGACCTTGCCA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCAGGAGGGGGTAGATTaGCAAGGTCCTGGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAQEGVD*QGPGWH
Trigger: ATGCCACCCAGGACCTTGCCAATCTACCCCCTCCTG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCAGCGCTTTGGGTGGGTaGCTATGGTTGGGAGTCCCC +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLSALGG*LWLGVP
Trigger: GGGGACTCCCAACCATAGCCACCCACCCAAAGCGCT...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTGGCAGCGCTTTGGGTaGGTGGCTATGGTTGGGAGT +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAWQRFG*VAMVGS
Trigger: ACTCCCAACCATAGCCACCCACCCAAAGCGCTGCCA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACAAGGCATCCAAGCCTaGCAGCGCTTTGGGTGGGTG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIQGIQA*QRFGWV
Trigger: CACCCACCCAAAGCGCTGCCAGGCTTGGATGCCTTG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCTAGATAGCTTCTTCTaGATGCGCCCACCTGGGGCA +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSLDSFF*MRPPGA
Trigger: TGCCCCAGGTGGGCGCATCCAGAAGAAGCTATCTAG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGACAGCCACTGCGGGTTaGGCTTGGAATTTGTGCATC +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLTATAG*AWNLCI
Trigger: GATGCACAAATTCCAAGCCCAACCCGCAGTGGCTGT...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCATCTCCTTTTTCTTCTTaGCCTTCTGATTGGCTTCCA +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKASPFSS*PSDWLP
Trigger: TGGAAGCCAATCAGAAGGCCAAGAAGAAAAAGGAGA...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTTTCACCTTGCCCTTaGCCTTCTTCTTGCCTGGTG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRFSPCP*PSSCLV
Trigger: CACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTTTTCACCTTGCCCTTaGCCTTCTTCTTGCCTGGTG +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGFSPCP*PSSCLV
Trigger: CACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAA...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTAAAGCTCTTTGGCTTTaGAGAAGCTCAGGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGKALWL*RSSGPP
Trigger: AGGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTT...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGCCGCTTCCCCAGCTTaGTCTCCTCTGGGTGGTAGA +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPAASPA*SPLGGR
Trigger: TCTACCACCCAGAGGAGACCAAGCTGGGGAAGCGGC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTCATTCTCATCTTCGTaGCAGGACTGGTACAGTGCG +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGSFSSS*QDWYSA
Trigger: CGCACTGTACCAGTCCTGCCACGAAGATGAGAATGA...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 72 bp GGTGGGAGACAGTCGGAGGTACTAGGGAAATATGGCTaGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGG +
Preference number: 4 (lower is better)
Translates to: GGRQSEVLGKYG*DSNLSRTAVQR
Trigger: CCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATATTTCCCTAGTACCTCCGACTGTCTCCCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCCTTTCGTTCCTCGATaGTGGCCATGGAGGTGTCGT +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAPFVPR*WPWRCR
Trigger: ACGACACCTCCATGGCCATCATCGAGGAACGAAAGG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACACTCCTCGCACGCCCGTaGCCTCTCCTCTTCGCTCTC +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTLLARP*PLLFAL
Trigger: GAGAGCGAAGAGGAGAGGTCACGGGCGTGCGAGGAG...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGAGGGTCTGTCAGGCTaGTGTCAGGCAGGTCTCCTA +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLEGLSG*CQAGLL
Trigger: TAGGAGACCTGCCTGACATCAGCCTGACAGACCCTC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAAGCAGGGCAATCCCATaGATCCCTGAGCTATGCGGC +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCISRAIP*IPELCG
Trigger: GCCGCATAGCTCAGGGATTCATGGGATTGCCCTGCT...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCCGCTCCCTGCCCTCTaGTCCCTTGCTAACTTTCTC +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLPLPAL*SLANFL
Trigger: GAGAAAGTTAGCAAGGGAGCAGAGGGCAGGGAGCGG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCACCGCTCCCTGCCCTCTaGTCCCTTGCTAACTTTCTC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPPLPAL*SLANFL
Trigger: GAGAAAGTTAGCAAGGGAGCAGAGGGCAGGGAGCGG...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAATGGCCGCATCCAGGTaGCGGTCCTTTCCATCACCT +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPMAASR*RSFPSP
Trigger: AGGTGATGGAAAGGACCGGCACCTGGATGCGGCCAT...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAACCAAGTGCTGCTGGTaGCGGATCCTGGCTACCTTC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPTKCCW*RILATF
Trigger: GAAGGTAGCCAGGATCCGGCACCAGCAGCACTTGGT...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCGACTAGGGCTTGGTTaGTGTATTTCAGCAGGTTCT +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGRLGLG*CISAGS
Trigger: AGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGGGGGTAGGTTCTGGTaGAGGGCGGGGTGTCCGAGA +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTGGRFW*RAGCPR
Trigger: TCTCGGACACCCCGCCCTGCACCAGAACCTACCCCC...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACATGGCGGAGGAGGGGGTaGCCTTGGCCATGGGGGTTA +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTWRRRG*PWPWGL
Trigger: TAACCCCCATGGCCAAGGGCACCCCCTCCTCCGCCA...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGCTCTGCTAGCTGCATaGGCATCTCCACTTCCTGTG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAALLAA*ASPLPV
Trigger: CACAGGAAGTGGAGATGCGCATGCAGCTAGCAGAGC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCAGCCTTGGCTTTCTTaGTGTCACTTCTGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWQPWLS*CHFWQA
Trigger: AGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGGCCAGTTTTCACCTTaGCCTTGGCCTTCTTCTTGC +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSGQFSP*PWPSSC
Trigger: GCAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTGCCAGCTTTGTCTTTaGTGCCAGATTTCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGCQLCL*CQISSQ
Trigger: CTGGGAAGAAATCTGGCAGCAAAGACAAAGCTGGCA...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACCTCCCGGCCTTTTCTaGTTCAGCCCGTTCAGCCTT +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIPPGLF*FSPFSL
Trigger: AAGGCTGAACGGGCTGAAGCAGAAAAGGCCGGGAGG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTGTGGGAGATGGTCTaGACGTCATTCTCATCTTCG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRLWEMV*TSFSSS
Trigger: CGAAGATGAGAATGACGTGCAGACCATCTCCCACAA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATCAGCAGGTTCTTCATaGCCGAGACCTCATCTGGCG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGSAGSS*PRPHLA
Trigger: CGCCAGATGAGGTCTCGGCCATGAAGAACCTGCTGA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTGGGCCCTTAGTGGCTaGAAACTTGGCTTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAWALSG*KLGFLL
Trigger: CAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACATAGTTTTGGGGTCTTaGAGGTCAGAGGAGTGCACG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDIVLGS*RSEECT
Trigger: CGTGCACTCCTCTGACCTCCAAGACCCCAAAACTAT...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGCTCTTCTAAGTTCCTaGGGCTGCATGGGGGTGGCT +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPALLSS*GCMGVA
Trigger: AGCCACCCCCATGCAGCCCCAGGAACTTAGAAGAGC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAAGATTGGCAAGGTCCTaGGTGGCATCCCTGGCCCTT +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPRLARS*VASLAL
Trigger: AAGGGCCAGGGATGCCACCCAGGACCTTGCCAATCT...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATGTCCAGCCGGTCGATaGCAGCCTTCAGGGGACATA +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCICPAGR*QPSGDI
Trigger: TATGTCCCCTGAAGGCTGCCATCGACCGGCTGGACA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTGCACGAACAGCCTTaGCTTTCTTGCTGTCACTTC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRLHEQP*LSCCHF
Trigger: GAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCTAGATAGCTTCTTCTaGATGCGCCCACCTGGGGCA +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLALDSFF*MRPPGA
Trigger: TGCCCCAGGTGGGCGCATCCAGAAGAAGCTATCTAG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGCTTGGCTCCCACCTTaGTCTTTACTGTTCGTCTCT +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDAWLPP*SLLFVS
Trigger: AGAGACGAACAGTAAAGACCAAGGTGGGAGCCAAGC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCTTCCGCCTCAGGACTaGCTGCAACATGGCGCTCTT +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLLPPQD*LQHGAL
Trigger: AAGAGCGCCATGTTGCAGCCAGTCCTGAGGCGGAAG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCATGCAGGTCTTCCTTGTaGATGGTGCAGGACCGTGCC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPCRSSL*MVQDRA
Trigger: GGCACGGTCCTGCACCATCCACAAGGAAGACCTGCA...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGTGCTTCCGTTGAGCTaGAAGAGGTTCTGTAGTACC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDVLPLS*KRFCST
Trigger: GGTACTACAGAACCTCTTCCAGCTCAACGGAAGCAC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGTCCGAGAAAGCTCTTTaGCTTTGGAGAAGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGSEKAL*LWRSSG
Trigger: CCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGA...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTCTTCGTGGCAGGACTaGTACAGTGCGTTCTTCCCG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLASSWQD*YSAFFP
Trigger: CGGGAAGAACGCACTGTACCAGTCCTGCCACGAAGA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGTCATTCTCATCTTCGTaGCAGGACTGGTACAGTGCG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGSFSSS*QDWYSA
Trigger: CGCACTGTACCAGTCCTGCCACGAAGATGAGAATGA...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 72 bp ACCCTTGGTGTTCCTGTGGACCACCAAGAGGGACCCTaGGAGCAACTAGTAAGAAAAACAGAGTCCCTGGGA +
Preference number: 4 (lower is better)
Translates to: TLGVPVDHQEGP*EQLVRKTESLG
Trigger: TCCCAGGGACTCTGTTTTTCTTACTAGTTGCTCCAAGGGTCCCTCTTGGTGGTCCACAGGAACACCAAGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACCTTTCGTTCCTCGATaGTGGCCATGGAGGTGTCGT +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIPFVPR*WPWRCR
Trigger: ACGACACCTCCATGGCCATCATCGAGGAACGAAAGG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAGGGCCTCCTTGCGCTTaGACTTGGATTTGCTACCAC +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIGPPCA*TWICYH
Trigger: GTGGTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCC...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGCTGTGGGGGCAGGTTaGGCAGGTAGAAGTTATCTT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGAVGAG*AGRSYL
Trigger: AAGATAACTTCTACCTGCGCAACCTGCCCCCACAGC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCACCTTCGTCAGCTTCCTaGTCTTTCCCAGGATGGCCT +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPPSSAS*SFPGWP
Trigger: AGGCCATCCTGGGAAAGAGCAGGAAGCTGACGAAGG...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGTTAGGAGGTCGACTTTaGCAGCTTTGTCTTTGCTGC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGLGGRL*QLCLCC
Trigger: GCAGCAAAGACAAAGCTGGCAAAGTCGACCTCCTAA...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGTACCCCCGGCCCTTTaGCACCTGCCGCCGCCGCTG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVVPPAL*HLPPPL
Trigger: CAGCGGCGGCGGCAGGTGGCAAAGGGCCGGGGGTAC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGACTCCCCGAAAATCTaGGGTACGCAGGAGCTTCAT +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLADSPKI*GTQELH
Trigger: ATGAAGCTCCTGCGTACCCCAGATTTTCGGGGAGTC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACAGGCCTCTGCTACTTaGAAAGAGCGGCTCTTGTCA +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGQASAT*KERLLS
Trigger: TGACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACAACTGGCTTGTGGGTaGACTTTGGGGTCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGQLACG*TLGSSP
Trigger: AGGAGAAGACCCCAAAGTCCACCCACAAGCCAGTTG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAACTGCGGGTTGGGCTTaGAATTTGTGCATCTCCCTG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGTAGWA*NLCISL
Trigger: CAGGGAGATGCACAAATTCCAAGCCCAACCCGCAGT...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAGTACCGACTGGACTGTaGCTGGACATCAAGAACCGC +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIVPTGL*LDIKNR
Trigger: GCGGTTCTTGATGTCCAGCCACAGTCCAGTCGGTAC...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGCCCTAAGCAGCTTGTaGGCTCCTCCGGGAAGGCCT +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTALSSL*APPGRP
Trigger: AGGCCTTCCCGGAGGAGCCCACAAGCTGCTTAGGGC...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCCTTGCCTCGGACAATaGCCTTGTAGAATAGTTTCC +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWPCLGQ*PCRIVS
Trigger: GGAAACTATTCTACAAGGCCATTGTCCGAGGCAAGG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCTTGCCTCGGACAATaGCCTTGTAGAATAGTTTCC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPCLGQ*PCRIVS
Trigger: GGAAACTATTCTACAAGGCCATTGTCCGAGGCAAGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGTGGTAGAACCATTTaGCCTTCACCACCATGTTGC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGGRTI*PSPPCC
Trigger: GCAACATGGTGGTGAAGGTCAAATGGTTCTACCACC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGACCAACTGCGTGGCTaGATCTTGGGGGAGGGGGAA +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTDQLRG*ILGEGE
Trigger: TTCCCCCTCCCCCAAGATGCAGCCACGCAGTTGGTC...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGTGAGCTTGAGTGTTTaGGCTTTCTTGGCCTGCCAG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPVSLSV*AFLACQ
Trigger: CTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCAC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACAGCCTTGGCTTTCTTaGTGTCACTTCTGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGQPWLS*CHFWQA
Trigger: AGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCTGGGCTTGGAATTTGTaGATCTCCCTGCCACTGTCC +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLWAWNL*ISLPLS
Trigger: GGACAGTGGCAGGGAGATGCACAAATTCCAAGCCCA...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACAGCTTTGTCTTTGCTaGCAGATTTCTTCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGQLCLC*QISSQG
Trigger: CCCCTGGGAAGAAATCTGGCAGCAAAGACAAAGCTG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCAGCTTTGTCTTTGCTaGCAGATTTCTTCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAQLCLC*QISSQG
Trigger: CCCCTGGGAAGAAATCTGGCAGCAAAGACAAAGCTG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCAGGCCTCTGCTACTTaGAAAGAGCGGCTCTTGTCA +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLQASAT*KERLLS
Trigger: TGACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGGGACAGGCTGGGTGTaGGGGCTTCGCTGGGCGGGT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVGTGWV*GLRWAG
Trigger: ACCCGCCCAGCGAAGCCCCCACACCCAGCCTGTCCC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGACATTTGTGGGAGATaGTCTGCACGTCATTCTCAT +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLDICGR*SARHSH
Trigger: ATGAGAATGACGTGCAGACCATCTCCCACAAATGTC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGACATTTGTGGGAGATaGTCTGCACGTCATTCTCAT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWDICGR*SARHSH
Trigger: ATGAGAATGACGTGCAGACCATCTCCCACAAATGTC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCTCTTGGTGCTTCCGTTaGGCTGGAAGAGGTTCTGTA +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLSWCFR*AGRGSV
Trigger: TACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGA...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAATGGCCGCATCCAGGTaGCGGTCCTTTCCATCACCT +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTMAASR*RSFPSP
Trigger: AGGTGATGGAAAGGACCGGCACCTGGATGCGGCCAT...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGGGGCGGCCCTGCCCTaGCGCCCACTGTTGGTATTG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVGAALP*RPLLVL
Trigger: CAATACCAACAGTGGGCGGCAGGGCAGGGCCGCCCC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTAGGAGGGACTGCGGGTaGGGGGCAGCCAGTGGGGAT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVRRDCG*GAASGD
Trigger: ATCCCCACTGGCTGCCCCGCACCCGCAGTCCCTCCT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGGCAAGATGACCAACTaGGTGGCTGCATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTGKMTN*VAASWG
Trigger: CCCCCAAGATGCAGCCACGCAGTTGGTCATCTTGCC...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAAGTGTGGCCAGGTGCTaGAGGTTGAAGGCCAGCACA +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTSVARC*RLKAST
Trigger: TGTGCTGGCCTTCAACCTGCAGCACCTGGCCACACT...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTGCGATGCCCACGGGTaGCTGCCTCACCTCCCCGTC +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVCDAHG*LPHLPV
Trigger: GACGGGGAGGTGAGGCAGCCACCCGTGGGCATCGCA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCCAGGGGGTAGGTTCTaGTGCAGGGCGGGGTGTCCG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVPGGRF*CRAGCP
Trigger: CGGACACCCCGCCCTGCACCAGAACCTACCCCCTGG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACATTTGGGGTCTTCTCCTaGGCAGCTTCCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTFGVFS*AASSSS
Trigger: GGAGCTGGAGGAAGCTGCCCAGGAGAAGACCCCAAA...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCACCTCATCTTCTTGCATaGACAGCTCACTCTTCTGCC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPPHLLA*TAHSSA
Trigger: GGCAGAAGAGTGAGCTGTCCATGCAAGAAGATGAGG...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCATTTTCACCTTGCCCTTaGCCTTCTTCTTGCCTGGTG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPFSPCP*PSSCLV
Trigger: CACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAA...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGTGCTTCCGTTGAGCTaGAAGAGGTTCTGTAGTACC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPVLPLS*KRFCST
Trigger: GGTACTACAGAACCTCTTCCAGCTCAACGGAAGCAC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAGAGGTCACACCCTCATaGTCCAGCTTAACCAGAAAC +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIEVTPS*SSLTRN
Trigger: GTTTCTGGTTAAGCTGGACCATGAGGGTGTGACCTC...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCATCCGAGAAAGCTCTTTaGCTTTGGAGAAGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPSEKAL*LWRSSG
Trigger: CCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGA...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCACGACTAGGGCTTGGTTaGTGTATTTCAGCAGGTTCT +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPRLGLG*CISAGS
Trigger: AGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCG...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAATTTGTGCATCTCCCTaGCACTGTCCCCATCGGGGT +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTICASP*HCPHRG
Trigger: ACCCCGATGGGGACAGTGGCAGGGAGATGCACAAAT...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATGCCAGCTTTGTCTTTaGTGCCAGATTTCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCICQLCL*CQISSQ
Trigger: CTGGGAAGAAATCTGGCAGCAAAGACAAAGCTGGCA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGCAGGGGGCTGCCTCTaGGGCCTAGGAAGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVAGGCL*GLGSGL
Trigger: CAGACCACTTCCTAGGCCGCAGAGGCAGCCCCCTGC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATTGTGGGAGATGGTCTaGACGTCATTCTCATCTTCG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCILWEMV*TSFSSS
Trigger: CGAAGATGAGAATGACGTGCAGACCATCTCCCACAA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCCTGGGTGGCATCCCTaGCCCTTGAGAGCAGCCCAG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVPGWHP*PLRAAQ
Trigger: CTGGGCTGCTCTCAAGGGCCAGGGATGCCACCCAGG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATGTAGAATAGTTTCCTaGCTTTCCCCTTCATGCCTC +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGCRIVS*LSPSCL
Trigger: GAGGCATGAAGGGGAAAGCCAGGAAACTATTCTACA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAACATCCTCATCTTCTTaGATGGACAGCTCACTCTTC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPTSSSS*MDSSLF
Trigger: GAAGAGTGAGCTGTCCATGCAAGAAGATGAGGATGT...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTGGTCCTCCGGCAGCTaGTGGACACCAACAGGGCTG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVWSSGS*WTPTGL
Trigger: CAGCCCTGTTGGTGTCCAGCAGCTGCCGGAGGACCA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTAGCTCAGCAGGGGGCTaGCTCTGCGGCCTAGGAAGT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVSSAGG*LCGLGS
Trigger: ACTTCCTAGGCCGCAGAGGCAGCCCCCTGCTGAGCT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAACAGCCACTGCGGGTTaGGCTTGGAATTTGTGCATC +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTTATAG*AWNLCI
Trigger: GATGCACAAATTCCAAGCCCAACCCGCAGTGGCTGT...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATCTCCTTTTTCTTCTTaGCCTTCTGATTGGCTTCCA +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGSPFSS*PSDWLP
Trigger: TGGAAGCCAATCAGAAGGCCAAGAAGAAAAAGGAGA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATGTAGAATAGTTTCCTaGCTTTCCCCTTCATGCCTC +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCICRIVS*LSPSCL
Trigger: GAGGCATGAAGGGGAAAGCCAGGAAACTATTCTACA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACACCTCATCTTCTTGCATaGACAGCTCACTCTTCTGCC +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTPHLLA*TAHSSA
Trigger: GGCAGAAGAGTGAGCTGTCCATGCAAGAAGATGAGG...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGCTTGGCTCCCACCTTaGTCTTTACTGTTCGTCTCT +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTAWLPP*SLLFVS
Trigger: AGAGACGAACAGTAAAGACCAAGGTGGGAGCCAAGC...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTGCTCTTTCCCAGGATaGCCTTGGCGTTGCGGGCTG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVCSFPG*PWRCGL
Trigger: CAGCCCGCAACGCCAAGGCCATCCTGGGAAAGAGCA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGCCGCTTCCCCAGCTTaGTCTCCTCTGGGTGGTAGA +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVAASPA*SPLGGR
Trigger: TCTACCACCCAGAGGAGACCAAGCTGGGGAAGCGGC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCCTCGGGGCCTGAACTaGGATACTCCAGGCCTTTCA +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVPRGLN*DTPGLS
Trigger: TGAAAGGCCTGGAGTATCTCAGTTCAGGCCCCGAGG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTAGAGGAGTGCACGTCTaGAGGGAGGGAGAGATCCAG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVRGVHV*REGEIQ
Trigger: CTGGATCTCTCCCTCCCTTCAGACGTGCACTCCTCT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCGGGAGACTTTGTCCTaGAGAGGGCAGAGCCCATCT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVRETLS*RGQSPS
Trigger: AGATGGGCTCTGCCCTCTGCAGGACAAAGTCTCCCG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGGAGACTCCATAGGGTaGACCATGGTCGGTGGCCAT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVGDSIG*TMVGGH
Trigger: ATGGCCACCGACCATGGTGCACCCTATGGAGTCTCC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCAAAGGGGGCTGTGGTaGCCCCTGATCTACAGTCCT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVQRGLW*PLIYSP
Trigger: AGGACTGTAGATCAGGGGGCACCACAGCCCCCTTTG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTTTGGGGTCTTCTCCTaGGCAGCTTCCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVFGVFS*AASSSS
Trigger: GGAGCTGGAGGAAGCTGCCCAGGAGAAGACCCCAAA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGCTCTTCTAAGTTCCTaGGGCTGCATGGGGGTGGCT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVALLSS*GCMGVA
Trigger: AGCCACCCCCATGCAGCCCCAGGAACTTAGAAGAGC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTAGATTGGCAAGGTCCTaGGTGGCATCCCTGGCCCTT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVRLARS*VASLAL
Trigger: AAGGGCCAGGGATGCCACCCAGGACCTTGCCAATCT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCAGGAGGGGGTAGATTaGCAAGGTCCTGGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVQEGVD*QGPGWH
Trigger: ATGCCACCCAGGACCTTGCCAATCTACCCCCTCCTG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGTCTTCTGCCTTCCCTaGTGGGAGTCCTCCCTCAAC +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVVFCLP*WESSLN
Trigger: GTTGAGGGAGGACTCCCACCAGGGAAGGCAGAAGAC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGGAAACTTGGCTTCCTaGTGGACGCAGCTGGCTTTG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVGNLAS*WTQLAL
Trigger: CAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGCTCTGCTAGCTGCATaGGCATCTCCACTTCCTGTG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVALLAA*ASPLPV
Trigger: CACAGGAAGTGGAGATGCGCATGCAGCTAGCAGAGC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTGCAGCTCTGCTAGCTaGATGCGCATCTCCACTTCC +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVCSSAS*MRISTS
Trigger: GGAAGTGGAGATGCGCATGCAGCTAGCAGAGCTGCA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACATGTAGAATAGTTTCCTaGCTTTCCCCTTCATGCCTC +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTCRIVS*LSPSCL
Trigger: GAGGCATGAAGGGGAAAGCCAGGAAACTATTCTACA...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACATCTCCTTTTTCTTCTTaGCCTTCTGATTGGCTTCCA +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTSPFSS*PSDWLP
Trigger: TGGAAGCCAATCAGAAGGCCAAGAAGAAAAAGGAGA...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 72 bp CTGCCCCCACCCAAATACTTTCATGGATGGGATGTATaGAAAGGAAATAAACCGCAGTGTAATTTCCTTCAC +
Preference number: 4 (lower is better)
Translates to: LPPPKYFHGWDV*KGNKPQCNFLH
Trigger: GTGAAGGAAATTACACTGCGGTTTATTTCCTTTCAATACATCCCATCCATGAAAGTATTTGGGTGGGGGCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGTGCTTCCGTTGAGCTaGAAGAGGTTCTGTAGTACC +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVVLPLS*KRFCST
Trigger: GGTACTACAGAACCTCTTCCAGCTCAACGGAAGCAC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTTGTGGGAGATGGTCTaGACGTCATTCTCATCTTCG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVLWEMV*TSFSSS
Trigger: CGAAGATGAGAATGACGTGCAGACCATCTCCCACAA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp GAAGCCATCGGCAGCGGCGACGGGAAGTACTTTCCGGGCTGGAAATaGGCGGCCGGTTGCGCGGCGGGGCCGGCGGGGGCGAGGCGCGCG +
Preference number: 5 (lower is better)
Translates to: EAIGSGDGKYFPGWK*AAGCAAGPAGARRA
Trigger: CGCGCGCCTCGCCCCCGCCGGCCCCGCCGCGCAACCGGCCGCGCATTTCCAGCCCGGAAAGTACTTCCCGTCGCCGCTGCCGATGGCTTC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GGTGTGCGCGTGGGGGCTGCTACCCTTAGAGCGCAGGGCTTCGGGTaGGGCCAGGAGGGCGGGCACAGGGCGGGTGAGACAGGTCTGCAG +
Preference number: 5 (lower is better)
Translates to: GVRVGAATLRAQGFG*GQEGGHRAGETGLQ
Trigger: CTGCAGACCTGTCTCACCCGCCCTGTGCCCGCCCTCCTGGCCCCACCCGAAGCCCTGCGCTCTAAGGGTAGCAGCCCCCACGCGCACACC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCGCTCCAGGCACTCACTGAAGGCTGGCCCAGGCTCCACGGGGCCTaGCACCTCCTTGGCACAGCGTCCGGGTGCTGCCACACCTGTCCC +
Preference number: 5 (lower is better)
Translates to: PLQALTEGWPRLHGA*HLLGTASGCCHTCP
Trigger: GGGACAGGTGTGGCAGCACCCGGACGCTGTGCCAAGGAGGTGGCAGGCCCCGTGGAGCCTGGGCCAGCCTTCAGTGAGTGCCTGGAGCGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCCACGGGTGGCTGCCTCACCTCCCCGTCTCCATGTGGGGCCTCATaGTCCCTGCTGCGGGCACAGTCGGGTCTTTCCACTGGGCCTGGG +
Preference number: 5 (lower is better)
Translates to: PTGGCLTSPSPCGAS*SLLRAQSGLSTGPG
Trigger: CCCAGGCCCAGTGGAAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCCCACATGGAGACGGGGAGGTGAGGCAGCCACCCGTGGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CAAGCTGGCCCCCGGGACGCAGGGCAGGCAGTGAGCTTGAGTGTTTaGGCTTTCTTGGCCTGCCAGGCCCCCGCCGTGCAGGGCTCCGTG +
Preference number: 5 (lower is better)
Translates to: QAGPRDAGQAVSLSV*AFLACQAPAVQGSV
Trigger: CACGGAGCCCTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACTGCCTGCCCTGCGTCCCGGGGGCCAGCTTG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TGGCAGGGTGGGATCCTCGGTAGGCCGGCTCAGAGGGAGAGGATGTaGGGCCACTGGGGTGTGCCGACGCTGCTGAGCCCAGGCTGCTGG +
Preference number: 5 (lower is better)
Translates to: WQGGILGRPAQRERM*GHWGVPTLLSPGCW
Trigger: CCAGCAGCCTGGGCTCAGCAGCGTCGGCACACCCCAGTGGCCCCACATCCTCTCCCTCTGAGCCGGCCTACCGAGGATCCCACCCTGCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp TTTGCGCTTTCTTGGCCTGCCAGGCCCCCGCCGTGCAGGGCTCCGTaGGCTCTCCTCTCTCTCGTGGTCATGCCTGCGCTGCAGGCGAGC +
Preference number: 5 (lower is better)
Translates to: FALSWPARPPPCRAP*ALLSLVVMPALQAS
Trigger: GCTCGCCTGCAGCGCAGGCATGACCACGAGAGAGAGGAGAGCTCACGGAGCCCTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CACTGCGATGCCCACGGGTGGCTGCCTCACCTCCCCGTCTCCATGTaGGGCCTCATGCTCCCTGCTGCGGGCACAGTCGGGTCTTTCCAC +
Preference number: 5 (lower is better)
Translates to: HCDAHGWLPHLPVSM*GLMLPAAGTVGSFH
Trigger: GTGGAAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCCCACATGGAGACGGGGAGGTGAGGCAGCCACCCGTGGGCATCGCAGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp TGCTGGTGGCGGTTCCTGGCTCTGTACGCAGGCCAGTTTTCACCTTaGCCTTGGCCTTCTTCTTGCCTGGTGCACCCGGGGGCCGCCGCC +
Preference number: 5 (lower is better)
Translates to: CWWRFLALYAGQFSP*PWPSSCLVHPGAAA
Trigger: GGCGGCGGCCCCCGGGTGCACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCCTGCGTACAGAGCCAGGAACCGCCACCAGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TCCTTCGGGATCAGGACGGGCAGTCCGTCCTGCAGGTCTTCCTTGTaGATGGTGCAGGACCGTGCCAGGGCGGCGCTCTGCTCTGCGCTG +
Preference number: 5 (lower is better)
Translates to: SFGIRTGSPSCRSSL*MVQDRARAALCSAL
Trigger: CAGCGCAGAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATCCACAAGGAAGACCTGCAGGACGGACTGCCCGTCCTGATCCCGAAGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCGCTGCCTCCCGATTCTACCTCAGGAGCCACCAAGTGCTGCTGGTaGCGGATCCTGGCTACCTTCTGTCCCACTGGAGGGCCAGCAGGG +
Preference number: 5 (lower is better)
Translates to: PLPPDSTSGATKCCW*RILATFCPTGGPAG
Trigger: CCCTGCTGGCCCTCCAGTGGGACAGAAGGTAGCCAGGATCCGGCACCAGCAGCACTTGGTGGCTCCTGAGGTAGAATCGGGAGGCAGCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp GACGCAGGGCAGGCAGTGAGCTTGAGTGTTTGCGCTTTCTTGGCCTaGCAGGCCCCCGCCGTGCAGGGCTCCGTGAGCTCTCCTCTCTCT +
Preference number: 5 (lower is better)
Translates to: DAGQAVSLSVCAFLA*QAPAVQGSVSSPLS
Trigger: AGAGAGAGGAGAGCTCACGGAGCCCTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACTGCCTGCCCTGCGTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp TACAGCAGGCTGTCCTCCTTCGGGATCAGGACGGGCAGTCCGTCCTaGAGGTCTTCCTTGTGGATGGTGCAGGACCGTGCCAGGGCGGCG +
Preference number: 5 (lower is better)
Translates to: YSRLSSFGIRTGSPS*RSSLWMVQDRARAA
Trigger: CGCCGCCCTGGCACGGTCCTGCACCATCCACAAGGAAGACCTGCAGGACGGACTGCCCGTCCTGATCCCGAAGGAGGACAGCCTGCTGTA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CAGGGCAGTGGGTACTTGCGCAGAGCCAGCCCCATGGGTAGCGGATaGACAGGCGCCCGACCCTTCTTGTCCTTGCCAATGAGGGCTGGG +
Preference number: 5 (lower is better)
Translates to: QGSGYLRRASPMGSG*TGARPFLSLPMRAG
Trigger: CCCAGCCCTCATTGGCAAGGACAAGAAGGGTCGGGCGCCTGTGCATCCGCTACCCATGGGGCTGGCTCTGCGCAAGTACCCACTGCCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CGGAGTAGGAGCTGGGGCAGTCACTATCACAGGGCAGTGGGTACTTaGGCAGAGCCAGCCCCATGGGTAGCGGATGCACAGGCGCCCGAC +
Preference number: 5 (lower is better)
Translates to: RSRSWGSHYHRAVGT*AEPAPWVADAQAPD
Trigger: GTCGGGCGCCTGTGCATCCGCTACCCATGGGGCTGGCTCTGCGCAAGTACCCACTGCCCTGTGATAGTGACTGCCCCAGCTCCTACTCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GGTGGGCGTAGGAGACTCCATAGGGTGCACCATGGTCGGTGGCCATaGCCGCATCCAGGTGCCGGTCCTTTCCATCACCTGCCACGGCAC +
Preference number: 5 (lower is better)
Translates to: GGRRRLHRVHHGRWP*PHPGAGPFHHLPRH
Trigger: GTGCCGTGGCAGGTGATGGAAAGGACCGGCACCTGGATGCGGCCATGGCCACCGACCATGGTGCACCCTATGGAGTCTCCTACGCCCACC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GCCCCGCTGCCTCCCGATTCTACCTCAGGAGCCACCAAGTGCTGCTaGTGCCGGATCCTGGCTACCTTCTGTCCCACTGGAGGGCCAGCA +
Preference number: 5 (lower is better)
Translates to: APLPPDSTSGATKCC*CRILATFCPTGGPA
Trigger: TGCTGGCCCTCCAGTGGGACAGAAGGTAGCCAGGATCCGGCACCAGCAGCACTTGGTGGCTCCTGAGGTAGAATCGGGAGGCAGCGGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TCCACTGGGCCTGGGCCCTTAGTGGCTGGAAACTTGGCTTCCTGCTaGACGCAGCTGGCTTTGAGGCTGCCCAGGCCCACGAACGGAGCC +
Preference number: 5 (lower is better)
Translates to: STGPGPLVAGNLASC*TQLALRLPRPTNGA
Trigger: GGCTCCGTTCGTGGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCCAGTGGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GGTGTGGGTTCCGAGGGCAAGATGACCAACTGCGTGGCTGCATCTTaGGGGAGGGGGAACACGGAGGGCATGGAGCCGGGCACAGATGCG +
Preference number: 5 (lower is better)
Translates to: GVGSEGKMTNCVAAS*GRGNTEGMEPGTDA
Trigger: CGCATCTGTGCCCGGCTCCATGCCCTCCGTGTTCCCCCTCCCCCAAGATGCAGCCACGCAGTTGGTCATCTTGCCCTCGGAACCCACACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GGCAGATGGGTAAAGTGCAGGGGGCGCTGGGCCGAGGTGGTGGTGTaGGGCAACTCGCAGGGGTCTTCAAAGTGGGCGACTGACAGCAGG +
Preference number: 5 (lower is better)
Translates to: GRWVKCRGRWAEVVV*GNSQGSSKWATDSR
Trigger: CCTGCTGTCAGTCGCCCACTTTGAAGACCCCTGCGAGTTGCCCCACACCACCACCTCGGCCCAGCGCCCCCTGCACTTTACCCATCTGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CTGGAAGGCACCGAGGCCGGCAGGCAGCCCCTTGCTCTTGACCTTTaGCTTCAGCTGGGCCACCTTGTGGGCCACCGAGGATGGCAACTC +
Preference number: 5 (lower is better)
Translates to: LEGTEAGRQPLALDL*LQLGHLVGHRGWQL
Trigger: GAGTTGCCATCCTCGGTGGCCCACAAGGTGGCCCAGCTGAAGCCAAAGGTCAAGAGCAAGGGGCTGCCTGCCGGCCTCGGTGCCTTCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CGGTGGCCAGCCCCGGCCCATCCTCGTCCTCATCGGAGTAGGAGCTaGGGCAGTCACTATCACAGGGCAGTGGGTACTTGCGCAGAGCCA +
Preference number: 5 (lower is better)
Translates to: RWPAPAHPRPHRSRS*GSHYHRAVGTCAEP
Trigger: TGGCTCTGCGCAAGTACCCACTGCCCTGTGATAGTGACTGCCCCAGCTCCTACTCCGATGAGGACGAGGATGGGCCGGGGCTGGCCACCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTGCAGGGCCTGCCTCCTaGCAGGGCCCCTCGGCAGGC +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGAGPAS*QGPSAG
Trigger: GCCTGCCGAGGGGCCCTGCAAGGAGGCAGGCCCTGC...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGGTCGCCGCTCGCCCTaGCCCTCAGCTTTTAGGTGG +
Preference number: 5 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGGRRSP*PSAFRW
Trigger: CCACCTAAAAGCTGAGGGCAAGGGCGAGCGGCGACC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
66% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTAGTGTTTGCGCTTTCTaGGCCTGCCAGGCCCCCGCC +
Preference number: 5 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPSVCAF*ACQAPA
Trigger: GGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGCGCCCGCTCCAGCTaGGCTCCCACCTTGGTCTTT +
Preference number: 5 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGARSS*APTLVF
Trigger: AAAGACCAAGGTGGGAGCCAAGCTGGAGCGGGCGCC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGTACCCCCGGCCCTTaGCCACCTGCCGCCGCCGCT +
Preference number: 5 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGSTPGP*PPAAAA
Trigger: AGCGGCGGCGGCAGGTGGCAAAGGGCCGGGGGTACT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCGGGCCCGCAGCTTCTaGGTGCTTCCGTTGAGCTGG +
Preference number: 5 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGRARSF*VLPLSW
Trigger: CCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp AGCTCTCCAGCAGCCGGCTCACCGCCCGCCCCTGGCCCTGCTTGCTaGCAGCCTCTCTCTTCACCTTCGTCAGCTTCCTGCTCTTTCCCA +
Preference number: 5 (lower is better)
Translates to: SSPAAGSPPAPGPAC*QPLSSPSSASCSFP
Trigger: TGGGAAAGAGCAGGAAGCTGACGAAGGTGAAGAGAGAGGCTGTCAGCAAGCAGGGCCAGGGGCGGGCGGTGAGCCGGCTGCTGGAGAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp ACAGCAAAGCTCTCCAGCAGCCGGCTCACCGCCCGCCCCTGGCCCTaGTTGCTGACAGCCTCTCTCTTCACCTTCGTCAGCTTCCTGCTC +
Preference number: 5 (lower is better)
Translates to: TAKLSSSRLTARPWP*LLTASLFTFVSFLL
Trigger: GAGCAGGAAGCTGACGAAGGTGAAGAGAGAGGCTGTCAGCAAGCAGGGCCAGGGGCGGGCGGTGAGCCGGCTGCTGGAGAGCTTTGCTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GCGGGCACAGTCGGGTCTTTCCACTGGGCCTGGGCCCTTAGTGGCTaGAAACTTGGCTTCCTGCTGGACGCAGCTGGCTTTGAGGCTGCC +
Preference number: 5 (lower is better)
Translates to: AGTVGSFHWAWALSG*KLGFLLDAAGFEAA
Trigger: GGCAGCCTCAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCCAGTGGAAAGACCCGACTGTGCCCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TGGGGCCTCATGCTCCCTGCTGCGGGCACAGTCGGGTCTTTCCACTaGGCCTGGGCCCTTAGTGGCTGGAAACTTGGCTTCCTGCTGGAC +
Preference number: 5 (lower is better)
Translates to: WGLMLPAAGTVGSFH*AWALSGWKLGFLLD
Trigger: GTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCCAGTGGAAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CTGCCTTCCCTGGTGGGAGTCCTCCCTCAACAGGAGGGGGTAGATTaGCAAGGTCCTGGGTGGCATCCCTGGCCCTTGAGAGCAGCCCAG +
Preference number: 5 (lower is better)
Translates to: LPSLVGVLPQQEGVD*QGPGWHPWPLRAAQ
Trigger: CTGGGCTGCTCTCAAGGGCCAGGGATGCCACCCAGGACCTTGCCAATCTACCCCCTCCTGTTGAGGGAGGACTCCCACCAGGGAAGGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CACAGTAGCAGCCACCAAGGCATCCAAGCCTGGCAGCGCTTTGGGTaGGTGGCTATGGTTGGGAGTCCCCCAGTCCACCTCCGAGTCCCC +
Preference number: 5 (lower is better)
Translates to: HSSSHQGIQAWQRFG*VAMVGSPPVHLRVP
Trigger: GGGGACTCGGAGGTGGACTGGGGGACTCCCAACCATAGCCACCCACCCAAAGCGCTGCCAGGCTTGGATGCCTTGGTGGCTGCTACTGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TTCAGCTGGGCCACCTTGTGGGCCACCGAGGATGGCAACTCGGCCTaGCCACAGCTCTTCTTGCACCGCACCTTCTCCGAGGAGACGGAC +
Preference number: 5 (lower is better)
Translates to: FSWATLWATEDGNSA*PQLFLHRTFSEETD
Trigger: GTCCGTCTCCTCGGAGAAGGTGCGGTGCAAGAAGAGCTGTGGCCAGGCCGAGTTGCCATCCTCGGTGGCCCACAAGGTGGCCCAGCTGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp AACAGGGTGTCCCGGGCCCGCAGCTTCTTGGTGCTTCCGTTGAGCTaGAAGAGGTTCTGTAGTACCCCCGGCCCTTTGCCACCTGCCGCC +
Preference number: 5 (lower is better)
Translates to: NRVSRARSFLVLPLS*KRFCSTPGPLPPAA
Trigger: GGCGGCAGGTGGCAAAGGGCCGGGGGTACTACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCGGGACACCCTGTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGGTCGCCGCTCGCCCTaGCCCTCAGCTTTTAGGTGG +
Preference number: 5 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAGRRSP*PSAFRW
Trigger: CCACCTAAAAGCTGAGGGCAAGGGCGAGCGGCGACC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCTGCGTGGCTGCATCTaGGGGGAGGGGGAACACGGA +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRLRGCI*GEGEHG
Trigger: TCCGTGTTCCCCCTCCCCCAAGATGCAGCCACGCAG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCACTGCGTGGCTGCATCTaGGGGGAGGGGGAACACGGA +
Preference number: 5 (lower is better)
Translates to: RELDQLHHWKPCSSWGKALRGCI*GEGEHG
Trigger: TCCGTGTTCCCCCTCCCCCAAGATGCAGCCACGCAG...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp GTCGGTGGCCATGGCCGCATCCAGGTGCCGGTCCTTTCCATCACCTaGCACGGCACAGGCCTCTGCTACTTGGAAAGAGCGGCTCTTGTC +
Preference number: 5 (lower is better)
Translates to: VGGHGRIQVPVLSIT*HGTGLCYLERAALV
Trigger: GACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTGTGCCGTGGCAGGTGATGGAAAGGACCGGCACCTGGATGCGGCCATGGCCACCGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CTTTCCACTGGGCCTGGGCCCTTAGTGGCTGGAAACTTGGCTTCCTaGTGGACGCAGCTGGCTTTGAGGCTGCCCAGGCCCACGAACGGA +
Preference number: 5 (lower is better)
Translates to: LSTGPGPLVAGNLAS*WTQLALRLPRPTNG
Trigger: TCCGTTCGTGGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCCAGTGGAAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCTGCCTCATGTGCCACAGCCACTGCGGGTTGGGCTTGGAATTTGTaGATCTCCCTGCCACTGTCCCCATCGGGGTGTGGATGCCGTGCC +
Preference number: 5 (lower is better)
Translates to: PASCATATAGWAWNL*ISLPLSPSGCGCRA
Trigger: GGCACGGCATCCACACCCCGATGGGGACAGTGGCAGGGAGATGCACAAATTCCAAGCCCAACCCGCAGTGGCTGTGGCACATGAGGCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp GGAGGTCACACCCTCATGGTCCAGCTTAACCAGAAACTCGCCGCCTaGCCGCCGCCTCCCGGCCTTTTCTGCTTCAGCCCGTTCAGCCTT +
Preference number: 5 (lower is better)
Translates to: GGHTLMVQLNQKLAA*PPPPGLFCFSPFSL
Trigger: AAGGCTGAACGGGCTGAAGCAGAAAAGGCCGGGAGGCGGCGGGCAGGCGGCGAGTTTCTGGTTAAGCTGGACCATGAGGGTGTGACCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CTCATGCTCCCTGCTGCGGGCACAGTCGGGTCTTTCCACTGGGCCTaGGCCCTTAGTGGCTGGAAACTTGGCTTCCTGCTGGACGCAGCT +
Preference number: 5 (lower is better)
Translates to: LMLPAAGTVGSFHWA*ALSGWKLGFLLDAA
Trigger: AGCTGCGTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCCAGTGGAAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CGGATGCACAGGCGCCCGACCCTTCTTGTCCTTGCCAATGAGGGCTaGGTGTGCGTAACTGGGGTTGCTAAGAGGTCGCCCCAGCTTGGG +
Preference number: 5 (lower is better)
Translates to: RMHRRPTLLVLANEG*VCVTGVAKRSPQLG
Trigger: CCCAAGCTGGGGCGACCTCTTAGCAACCCCAGTTACGCACACCCAGCCCTCATTGGCAAGGACAAGAAGGGTCGGGCGCCTGTGCATCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCAGCAGGGTGATAGCTaGACCAGGCCTGCAGTGGCG +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRQQGDS*TRPAVA
Trigger: CGCCACTGCAGGCCTGGTCAAGCTATCACCCTGCTG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTACAGGAGGGGGTAGATaGGCAAGGTCCTGGGTGGCA +
Preference number: 5 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPTGGGR*ARSWVA
Trigger: TGCCACCCAGGACCTTGCCAATCTACCCCCTCCTGT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCACGCTCACTGGCAAGTTaGCTGCCCTCCTCTCGGCAG +
Preference number: 5 (lower is better)
Translates to: RELDQLHHWKPCSSWGKARSLAS*LPSSRQ
Trigger: CTGCCGAGAGGAGGGCAGCAAACTTGCCAGTGAGCG...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGAGTACCCCCGGCCCTTaGCCACCTGCCGCCGCCGCT +
Preference number: 5 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGSTPGP*PPAAAA
Trigger: AGCGGCGGCGGCAGGTGGCAAAGGGCCGGGGGTACT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACAGGGCAGTGGGTACTaGCGCAGAGCCAGCCCCATG +
Preference number: 5 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTQGSGY*RRASPM
Trigger: CATGGGGCTGGCTCTGCGCAAGTACCCACTGCCCTG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp CGTCAGCTTCCTGCTCTTTCCCAGGATGGCCTTGGCGTTGCGGGCTaGCAGAGCGATGGACAAGGCCCCATTCTTCCGCCTCAGGACTGG +
Preference number: 5 (lower is better)
Translates to: RQLPALSQDGLGVAG*QSDGQGPILPPQDW
Trigger: CCAGTCCTGAGGCGGAAGAATGGGGCCTTGTCCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCCTGGGAAAGAGCAGGAAGCTGACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp TGGGAAACAGGGTGTCCCGGGCCCGCAGCTTCTTGGTGCTTCCGTTaGGCTGGAAGAGGTTCTGTAGTACCCCCGGCCCTTTGCCACCTG +
Preference number: 5 (lower is better)
Translates to: WETGCPGPAASWCFR*AGRGSVVPPALCHL
Trigger: CAGGTGGCAAAGGGCCGGGGGTACTACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCGGGACACCCTGTTTCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp GACAGAGCGATGGACAAGGCCCCATTCTTCCGCCTCAGGACTGGCTaGAACATGGCGCTCTTGCGGGTGGCTCTCTTGAGGCGCTCACTG +
Preference number: 5 (lower is better)
Translates to: DRAMDKAPFFRLRTG*NMALLRVALLRRSL
Trigger: CAGTGAGCGCCTCAAGAGAGCCACCCGCAAGAGCGCCATGTTGCAGCCAGTCCTGAGGCGGAAGAATGGGGCCTTGTCCATCGCTCTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CACAGGCGCCCGACCCTTCTTGTCCTTGCCAATGAGGGCTGGGTGTaGGTAACTGGGGTTGCTAAGAGGTCGCCCCAGCTTGGGTCCGAA +
Preference number: 5 (lower is better)
Translates to: HRRPTLLVLANEGWV*VTGVAKRSPQLGSE
Trigger: TTCGGACCCAAGCTGGGGCGACCTCTTAGCAACCCCAGTTACGCACACCCAGCCCTCATTGGCAAGGACAAGAAGGGTCGGGCGCCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCTCTGTCCCCAGGAGTGCCTGGCAGTCCTCACTGTCATAGCCGCTaGCTGCCTCATGTGCCACAGCCACTGCGGGTTGGGCTTGGAATT +
Preference number: 5 (lower is better)
Translates to: PLSPGVPGSPHCHSR*LPHVPQPLRVGLGI
Trigger: AATTCCAAGCCCAACCCGCAGTGGCTGTGGCACATGAGGCAGGCAGCGGCTATGACAGTGAGGACTGCCAGGCACTCCTGGGGACAGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TCTTGTCAGCCAGGTGTCCCACAGAAGGCACAAAGGTGGGCCCGCTaGCCTTTAGGTCCCGGGAGACTTTGTCCTGCAGAGGGCAGAGCC +
Preference number: 5 (lower is better)
Translates to: SCQPGVPQKAQRWAR*PLGPGRLCPAEGRA
Trigger: GGCTCTGCCCTCTGCAGGACAAAGTCTCCCGGGACCTAAAGGCCAGCGGGCCCACCTTTGTGCCTTCTGTGGGACACCTGGCTGACAAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CTTGACCTTTGGCTTCAGCTGGGCCACCTTGTGGGCCACCGAGGATaGCAACTCGGCCTGGCCACAGCTCTTCTTGCACCGCACCTTCTC +
Preference number: 5 (lower is better)
Translates to: LDLWLQLGHLVGHRG*QLGLATALLAPHLL
Trigger: GAGAAGGTGCGGTGCAAGAAGAGCTGTGGCCAGGCCGAGTTGCCATCCTCGGTGGCCCACAAGGTGGCCCAGCTGAAGCCAAAGGTCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGCAGGGCCTGCCTCCTaGCAGGGCCCCTCGGCAGGC +
Preference number: 5 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGAGPAS*QGPSAG
Trigger: GCCTGCCGAGGGGCCCTGCAAGGAGGCAGGCCCTGC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAAGGTCCCGGGAGACTTaGTCCTGCAGAGGGCAGAGC +
Preference number: 5 (lower is better)
Translates to: APCSSKARLLSLHQTGHGRSRET*SCRGQS
Trigger: GCTCTGCCCTCTGCAGGACAAAGTCTCCCGGGACCT...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACTCCAGGGCAGCTGCTaGAAGGGTGGATCCGGGCAA +
Preference number: 5 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLQGSC*KGGSGQ
Trigger: TTGCCCGGATCCACCCTTCAAGCAGCTGCCCTGGAG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGGCAGCCCCTTGCTCTaGACCTTTGGCTTCAGCTGG +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRGSPLL*TFGFSW
Trigger: CCAGCTGAAGCCAAAGGTCAAGAGCAAGGGGCTGCC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGGCGCCCGCTCCAGCTaGGCTCCCACCTTGGTCTTT +
Preference number: 5 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAGARSS*APTLVF
Trigger: AAAGACCAAGGTGGGAGCCAAGCTGGAGCGGGCGCC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATAGTACCCCCGGCCCTTaGCCACCTGCCGCCGCCGCT +
Preference number: 5 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHSTPGP*PPAAAA
Trigger: AGCGGCGGCGGCAGGTGGCAAAGGGCCGGGGGTACT...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCGGGCCCGCAGCTTCTaGGTGCTTCCGTTGAGCTGG +
Preference number: 5 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGRARSF*VLPLSW
Trigger: CCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAAGAGGTCGCCCCAGCTaGGGTCCGAAGTCCTTGTCG +
Preference number: 5 (lower is better)
Translates to: APCSSKARLLSLHQTGHGRGRPS*GPKSLS
Trigger: CGACAAGGACTTCGGACCCAAGCTGGGGCGACCTCT...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCGACCCTTCTTGTCCTaGCCAATGAGGGCTGGGTGT +
Preference number: 5 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGRPFLS*PMRAGC
Trigger: ACACCCAGCCCTCATTGGCAAGGACAAGAAGGGTCG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp TGTGGATGGTGCAGGACCGTGCCAGGGCGGCGCTCTGCTCTGCGCTaGGCTGTACACCGGCTTCTTCCTCTTCTTCTTCCTCATCCGAGA +
Preference number: 5 (lower is better)
Translates to: CGWCRTVPGRRSALR*AVHRLLPLLLPHPR
Trigger: TCTCGGATGAGGAAGAAGAAGAGGAAGAAGCCGGTGTACAGCTCAGCGCAGAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATCCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CTGGAGGGCCAGCAGGGGCCTCTTTGTTGGCCACTTTGTCTAAAGTaGAGCAGGCCTGGGTGGCCTTCCCACCCAGTGGGTCTTGGTGAT +
Preference number: 5 (lower is better)
Translates to: LEGQQGPLCWPLCLK*SRPGWPSHPVGLGD
Trigger: ATCACCAAGACCCACTGGGTGGGAAGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTGGCCCTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CAGCACACAGCAGACTTAGGCTTGCACGAACAGCCTTGGCTTTCTTaGTGTCACTTCTGGCAAGCTGGCCCCCGGGACGCAGGGCAGGCA +
Preference number: 5 (lower is better)
Translates to: QHTADLGLHEQPWLS*CHFWQAGPRDAGQA
Trigger: TGCCTGCCCTGCGTCCCGGGGGCCAGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAGCCTAAGTCTGCTGTGTGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCTCTGTCCCCAGGAGTGCCTGGCAGTCCTCACTGTCATAGCCGTTaGCTGCCTCATGTGCCACAGCCACTGCGGGTTGGGCTTGGAATT +
Preference number: 5 (lower is better)
Translates to: PLSPGVPGSPHCHSR*LPHVPQPLRVGLGI
Trigger: AATTCCAAGCCCAACCCGCAGTGGCTGTGGCACATGAGGCAGGCAACGGCTATGACAGTGAGGACTGCCAGGCACTCCTGGGGACAGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044985.14
CDS CCA 90 bp CTTTTAGGTGGGCGTAGGAGACTCCATAGGGTGCACCATGGTCGGTaGCCATGGCCGCATCCAGGTGCCGGTCCTTTCCATCACCTGCCA +
Preference number: 5 (lower is better)
Translates to: LLGGRRRLHRVHHGR*PWPHPGAGPFHHLP
Trigger: TGGCAGGTGATGGAAAGGACCGGCACCTGGATGCGGCCATGGCCACCGACCATGGTGCACCCTATGGAGTCTCCTACGCCCACCTAAAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TGCAGCAGGCCTGGGTGGCCTTCCCACCCAGTGGGTCTTGGTGATTaGACCGGGCACAGTCCTGTGAAGTGGGCAACTCAAAGTAGCCAC +
Preference number: 5 (lower is better)
Translates to: CSRPGWPSHPVGLGD*TGHSPVKWATQSSH
Trigger: GTGGCTACTTTGAGTTGCCCACTTCACAGGACTGTGCCCGGTCCAATCACCAAGACCCACTGGGTGGGAAGGCCACCCAGGCCTGCTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TGGCTACCTTCTGTCCCACTGGAGGGCCAGCAGGGGCCTCTTTGTTaGCCACTTTGTCTAAAGTGCAGCAGGCCTGGGTGGCCTTCCCAC +
Preference number: 5 (lower is better)
Translates to: WLPSVPLEGQQGPLC*PLCLKCSRPGWPSH
Trigger: GTGGGAAGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTGGCCCTCCAGTGGGACAGAAGGTAGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GCTTGCGCTGGAACTGGGCAACTCGCTGTAGCTCCAGGGCCTGTGTaGCCCGATGTTGCTGCTGCTGCTGTTGCTGCTGCTGCTGTTGTT +
Preference number: 5 (lower is better)
Translates to: ACAGTGQLAVAPGPV*PDVAAAAVAAAAVV
Trigger: AACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACATCGGGCCACACAGGCCCTGGAGCTACAGCGAGTTGCCCAGTTCCAGCGCAAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CTTGCACGAACAGCCTTGGCTTTCTTGCTGTCACTTCTGGCAAGCTaGCCCCCGGGACGCAGGGCAGGCAGTGAGCTTGAGTGTTTGCGC +
Preference number: 5 (lower is better)
Translates to: LARTALAFLLSLLAS*PPGRRAGSELECLR
Trigger: GCGCAAACACTCAAGCTCACTGCCTGCCCTGCGTCCCGGGGGCCAGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TGCTCTTTCCCAGGATGGCCTTGGCGTTGCGGGCTGACAGAGCGATaGACAAGGCCCCATTCTTCCGCCTCAGGACTGGCTGCAACATGG +
Preference number: 5 (lower is better)
Translates to: CSFPGWPWRCGLTER*TRPHSSASGLAATW
Trigger: CCATGTTGCAGCCAGTCCTGAGGCGGAAGAATGGGGCCTTGTCCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCCTGGGAAAGAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GTAGGCACAGACCCGGGTACCAGGTGGAAGGTACCGACTGGACTGTaGCTGGACATCAAGAACCGCCTCCTGCAGCAGCTGTTCCAGCGA +
Preference number: 5 (lower is better)
Translates to: VGTDPGTRWKVPTGL*LDIKNRLLQQLFQR
Trigger: TCGCTGGAACAGCTGCTGCAGGAGGCGGTTCTTGATGTCCAGCCACAGTCCAGTCGGTACCTTCCACCTGGTACCCGGGTCTGTGCCTAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TGCCTCTGCGGCCTAGGAAGTGGTCTGAGGCCCCCGTGGGGGACTTaGCACCTGAGGTTAGGAGGTCGACTTTGCCAGCTTTGTCTTTGC +
Preference number: 5 (lower is better)
Translates to: CLCGLGSGLRPPWGT*HLRLGGRLCQLCLC
Trigger: GCAAAGACAAAGCTGGCAAAGTCGACCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGGCCTCAGACCACTTCCTAGGCCGCAGAGGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp AGTCACTATCACAGGGCAGTGGGTACTTGCGCAGAGCCAGCCCCATaGGTAGCGGATGCACAGGCGCCCGACCCTTCTTGTCCTTGCCAA +
Preference number: 5 (lower is better)
Translates to: SHYHRAVGTCAEPAP*VADAQAPDPSCPCQ
Trigger: TTGGCAAGGACAAGAAGGGTCGGGCGCCTGTGCATCCGCTACCCATGGGGCTGGCTCTGCGCAAGTACCCACTGCCCTGTGATAGTGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGCAGGGCCTGCCTCCTaGCAGGGCCCCTCGGCAGGC +
Preference number: 5 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPAGPAS*QGPSAG
Trigger: GCCTGCCGAGGGGCCCTGCAAGGAGGCAGGCCCTGC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCAGTGCATAGAGCTCTaGCTGCCGAAGCAGCTGGGA +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRQCIEL*LPKQLG
Trigger: TCCCAGCTGCTTCGGCAGCAAGAGCTCTATGCACTG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGTTAAGGCAACTGGCTaGTGGGTGGACTTTGGGGTC +
Preference number: 5 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPVKATG*WVDFGV
Trigger: GACCCCAAAGTCCACCCACAAGCCAGTTGCCTTAAC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATGTGGACCTTCACGCTaGTCCAGGGCAGCTGGGCTC +
Preference number: 5 (lower is better)
Translates to: GGCIFAQTSSWLADLLAACGPSR*SRAAGL
Trigger: GAGCCCAGCTGCCCTGGACAAGCGTGAAGGTCCACA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGCCAGGTGCTGCAGGTaGAAGGCCAGCACATCCTCA +
Preference number: 5 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTARCCR*KASTSS
Trigger: TGAGGATGTGCTGGCCTTCAACCTGCAGCACCTGGC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCTTGCGTTGCAGGATTaGCATTCTGGGGGTGAGCCT +
Preference number: 5 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGLALQD*HSGGEP
Trigger: AGGCTCACCCCCAGAATGCAAATCCTGCAACGCAAG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGCGAGCCAGCTCCCGTaGCTTCTCCTTGTAGCGCCT +
Preference number: 5 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAASQLP*LLLVAP
Trigger: AGGCGCTACAAGGAGAAGCAACGGGAGCTGGCTCGC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTAGTGTTTGCGCTTTCTaGGCCTGCCAGGCCCCCGCC +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGSVCAF*ACQAPA
Trigger: GGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACT...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGGCAGCCCCTTGCTCTaGACCTTTGGCTTCAGCTGG +
Preference number: 5 (lower is better)
Translates to: APCSSKARLLSLHQTGHGGSPLL*TFGFSW
Trigger: CCAGCTGAAGCCAAAGGTCAAGAGCAAGGGGCTGCC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATTGGCCCTAAGCAGCTaGTGGGCTCCTCCGGGAAGG +
Preference number: 5 (lower is better)
Translates to: GGCIFAQTSSWLADLLAALALSS*WAPPGR
Trigger: CCTTCCCGGAGGAGCCCACAAGCTGCTTAGGGCCAA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGAGGTCGCCCCAGCTaGGGTCCGAAGTCCTTGTCG +
Preference number: 5 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGRGRPS*GPKSLS
Trigger: CGACAAGGACTTCGGACCCAAGCTGGGGCGACCTCT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAAGAGGTCGCCCCAGCTaGGGTCCGAAGTCCTTGTCG +
Preference number: 5 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVRGRPS*GPKSLS
Trigger: CGACAAGGACTTCGGACCCAAGCTGGGGCGACCTCT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp TTTACCCATGAGGAAGCGGTCAAACTCCTTAGGACCCTTCTGCAGTaGGGCAGCCTCGATGCGGTCCCGGCTGCAGGACCCGATGGGATG +
Preference number: 5 (lower is better)
Translates to: FTHEEAVKLLRTLLQ*GSLDAVPAAGPDGM
Trigger: CATCCCATCGGGTCCTGCAGCCGGGACCGCATCGAGGCTGCCTCACTGCAGAAGGGTCCTAAGGAGTTTGACCGCTTCCTCATGGGTAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp ACAGCTCACTCTTCTGCCGCTGGGTCTCCAGGTCAGCCAGCTCACTaGGCAGGGCAATCCCATGAATCCCTGAGCTATGCGGCAGAGGAG +
Preference number: 5 (lower is better)
Translates to: TAHSSAAGSPGQPAH*AGQSHESLSYAAEE
Trigger: CTCCTCTGCCGCATAGCTCAGGGATTCATGGGATTGCCCTGCTCAGTGAGCTGGCTGACCTGGAGACCCAGCGGCAGAAGAGTGAGCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp CAAGTTTGCTGCCCTCCTCTCGGCAGGCAAAAGTCCGGGTGGGACTaGAAAGGGTGTCTCTGCTGGTGGCGGTTCCTGGCTCTGTACGCA +
Preference number: 5 (lower is better)
Translates to: QVCCPPLGRQKSGWD*KGCLCWWRFLALYA
Trigger: TGCGTACAGAGCCAGGAACCGCCACCAGCAGAGACACCCTTTTCAGTCCCACCCGGACTTTTGCCTGCCGAGAGGAGGGCAGCAAACTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp ACCTCTTTACCCATGAGGAAGCGGTCAAACTCCTTAGGACCCTTCTaGAGTGAGGCAGCCTCGATGCGGTCCCGGCTGCAGGACCCGATG +
Preference number: 5 (lower is better)
Translates to: TSLPMRKRSNSLGPF*SEAASMRSRLQDPM
Trigger: CATCGGGTCCTGCAGCCGGGACCGCATCGAGGCTGCCTCACTGCAGAAGGGTCCTAAGGAGTTTGACCGCTTCCTCATGGGTAAAGAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp ATCCAGGTGCCGGTCCTTTCCATCACCTGCCACGGCACAGGCCTCTaGTACTTGGAAAGAGCGGCTCTTGTCAGCCAGGTGTCCCACAGA +
Preference number: 5 (lower is better)
Translates to: IQVPVLSITCHGTGL*YLERAALVSQVSHR
Trigger: TCTGTGGGACACCTGGCTGACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTGTGCCGTGGCAGGTGATGGAAAGGACCGGCACCTGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCAGGCCCACGAACGGAGCCTTCTGGCCCACGACTAGGGCTTGGTTaGTGTATTTCAGCAGGTTCTTCATGGCCGAGACCTCATCTGGCG +
Preference number: 5 (lower is better)
Translates to: PGPRTEPSGPRLGLG*CISAGSSWPRPHLA
Trigger: CGCCAGATGAGGTCTCGGCCATGAAGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCGTGGGCCAGAAGGCTCCGTTCGTGGGCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp AACTGGGCAACTCGCTGTAGCTCCAGGGCCTGTGTGGCCCGATGTTaGTGCTGCTGCTGTTGCTGCTGCTGCTGTTGTTGTTGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: NWATRCSSRACVARC*CCCCCCCCCCCCCC
Trigger: GCAGCAGCAACAACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACATCGGGCCACACAGGCCCTGGAGCTACAGCGAGTTGCCCAGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp TGTCCCCAGGAGTGCCTGGCAGTCCTCACTGTCATAGCCGTTGCCTaGCTCATGTGCCACAGCCACTGCGGGTTGGGCTTGGAATTTGTG +
Preference number: 5 (lower is better)
Translates to: CPQECLAVLTVIAVA*LMCHSHCGLGLEFV
Trigger: CACAAATTCCAAGCCCAACCCGCAGTGGCTGTGGCACATGAGGCAGGCAACGGCTATGACAGTGAGGACTGCCAGGCACTCCTGGGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044985.14
CDS GCA 90 bp TTCCTTGTGGATGGTGCAGGACCGTGCCAGGGCGGCGCTCTGCTCTaGGCTGAGCTGTACACCGGCTTCTTCCTCTTCTTCTTCCTCATC +
Preference number: 5 (lower is better)
Translates to: FLVDGAGPCQGGALL*AELYTGFFLFFFLI
Trigger: GATGAGGAAGAAGAAGAGGAAGAAGCCGGTGTACAGCTCAGCGCAGAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATCCACAAGGAA