RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BAHCC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039741

Ensembl transcript IDs: ENSMUST00000044985.14, ENSMUST00000118987.2, ENSMUST00000122148.8

Found 1193 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCAGACGGGCCCCAAATTCTGGCCCAGACAGGGAGCTGGACCAGCTaGACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCTGTTG +
Preference number: 1 (lower is better)
Translates to: PDGPQILAQTGSWTS*TIGSPAALGGRQLL
Trigger: CAACAGCTGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGCCAGAATTTGGGGCCCGTCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR TCA 90 bp GGGTCTAGGTTGAGAGAAGGGGAGCCGGATGGGCGCCCCCTTGGGTaGGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGC +
Preference number: 1 (lower is better)
Translates to: GSRLREGEPDGRPLG*AASPFYCCDSRTSG
Trigger: GCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTCACCCAAGGGGGCGCCCATCCGGCTCCCCTTCTCTCAACCTAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 90 bp AACAGAAACCCTCAGGGTGGTGGGACAGCCAGGAACGGGCACCCTTaGTGTTCCTGTGGACCACCAAGAGGGACCCTTGGAGCAACTAGT +
Preference number: 1 (lower is better)
Translates to: NRNPQGGGTARNGHP*CSCGPPRGTLGATS
Trigger: ACTAGTTGCTCCAAGGGTCCCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCACCCTGAGGGTTTCTGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 90 bp CACTTCCTAGGAAGCCTTGGCCGAGTGGACACTGGGGAGCACGGGTaGCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGTC +
Preference number: 1 (lower is better)
Translates to: HFLGSLGRVDTGEHG*HKAFLRTKAFGPWV
Trigger: GACCCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCCAGTGTCCACTCGGCCAAGGCTTCCTAGGAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR TCA 90 bp TTGGCCGAGTGGACACTGGGGAGCACGGGTGCCACAAGGCATTTCTaGGAACAAAGGCTTTTGGTCCATGGGTCTAGCCTGCTCTTTCCA +
Preference number: 1 (lower is better)
Translates to: LAEWTLGSTGATRHF*EQRLLVHGSSLLFP
Trigger: TGGAAAGAGCAGGCTAGACCCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCCAGTGTCCACTCGGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 90 bp GTAATTTCCTTCACAGTTGGCCCCCAAGAGATTGGAGGGTATGACTaGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATT +
Preference number: 1 (lower is better)
Translates to: VISFTVGPQEIGGYD*VSCDHPTAFGHAPI
Trigger: AATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCCAGTCATACCCTCCAATCTCTTGGGGGCCAACTGTGAAGGAAATTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 90 bp CAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGTCTAGCCTaGTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTG +
Preference number: 1 (lower is better)
Translates to: QGISENKGFWSMGLA*SFHHGRSEDCLAFL
Trigger: CAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGCAGGCTAGACCCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 90 bp TGCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTaGCCATGGAAACGGAAACCAGAAATAACTTGGAATATTCAGGAA +
Preference number: 1 (lower is better)
Translates to: CTLLEQGQASLPASN*PWKRKPEITWNIQE
Trigger: TTCCTGAATATTCCAAGTTATTTCTGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 90 bp TCCAGGGGACCGCCATCACTGCCCCCACCCAAATACTTTCATGGATaGGATGTATTGAAAGGAAATAAACCGCAGTGTAATTTCCTTCAC +
Preference number: 1 (lower is better)
Translates to: SRGPPSLPPPKYFHG*DVLKGNKPQCNFLH
Trigger: GTGAAGGAAATTACACTGCGGTTTATTTCCTTTCAATACATCCCATCCATGAAAGTATTTGGGTGGGGGCAGTGATGGCGGTCCCCTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 90 bp CTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATaGAAACGGAAACCAGAAATAACTTGGAATATTCAGGAAAGAAAG +
Preference number: 1 (lower is better)
Translates to: LLEQGQASLPASNWP*KRKPEITWNIQERK
Trigger: CTTTCTTTCCTGAATATTCCAAGTTATTTCTGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 90 bp GGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAAAAGGATaGGGGGACCTAAAGATAAAGACAGAGCAAGAGGACAGTTCAGCA +
Preference number: 1 (lower is better)
Translates to: GVTPFACTHRKKGKG*GDLKIKTEQEDSSA
Trigger: TGCTGAACTGTCCTCTTGCTCTGTCTTTATCTTTAGGTCCCCCCATCCTTTTCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 90 bp TTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTaGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAA +
Preference number: 1 (lower is better)
Translates to: LHIYKIRAFYHVSHS*GGGVTPFACTHRKK
Trigger: TTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAAGCAGCCGGTCCCCGTaGGACCAGCCTGGCTCTCCC +
Preference number: 2 (lower is better)
Translates to: RELDQLHHWKPCSSWGKASSRSP*DQPGSP
Trigger: GGGAGAGCCAGGCTGGTCCCACGGGGACCGGCTGCT...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGGGCCGCCTGCACCCTaGTCGAGCAAGGCCAGGCTT +
Preference number: 2 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAGPPAP*SSKARL
Trigger: AAGCCTGGCCTTGCTCGAGCAGGGTGCAGGCGGCCC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAAGCAGCCGGTCCCCGTaGGACCAGCCTGGCTCTCCC +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTSSRSP*DQPGSP
Trigger: GGGAGAGCCAGGCTGGTCCCACGGGGACCGGCTGCT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGCTGGCTGACCTCTTaGCTGCAGTCATGGGCGAGG +
Preference number: 2 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGWLTS*LQSWAR
Trigger: CCTCGCCCATGACTGCAGCCAAGAGGTCAGCCAGCC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGCAGCCGGTCCCCGTaGGACCAGCCTGGCTCTCCC +
Preference number: 2 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGSSRSP*DQPGSP
Trigger: GGGAGAGCCAGGCTGGTCCCACGGGGACCGGCTGCT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGTGTGTAGGTGTGGGGTaGGCAGAGGGGGCCCAGGAT +
Preference number: 2 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRCVGVG*AEGAQD
Trigger: ATCCTGGGCCCCCTCTGCCCACCCCACACCTACACA...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGGGGACCGCCATCACTaGCCCCACCCAAATACTTTC +
Preference number: 2 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGGDRHH*PHPNTF
Trigger: GAAAGTATTTGGGTGGGGGCAGTGATGGCGGTCCCC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
62% GC, longest homopolymer 9 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAAGACCAGCTCCTGGCTaGCTGACCTCTTGGCTGCAG +
Preference number: 2 (lower is better)
Translates to: RELDQLHHWKPCSSWGKARPAPG*LTSWLQ
Trigger: CTGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCT...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACAGCTCCTGGCTGGCTaGCCTCTTGGCTGCAGTCAT +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTQLLAG*PLGCSH
Trigger: ATGACTGCAGCCAAGAGGTCAGCCAGCCAGGAGCTG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGCTCAGACCAGCTCCTaGCTGGCTGACCTCTTGGCT +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTAQTSS*LADLLA
Trigger: AGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTCCTGGGCTGTAGAGTaGGGCAGGCCGGTACCGGCC +
Preference number: 2 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLSWAVE*GRPVPA
Trigger: GGCCGGTACCGGCCTGCCCCACTCTACAGCCCAGGA...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATCTCATGCAGAACTGTaGACCAGCCCCAGACGGGCC +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTSHAEL*TSPRRA
Trigger: GGCCCGTCTGGGGCTGGTCCACAGTTCTGCATGAGA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGAGAAGGGGAGCCGGATaGGCGCCCCCTTGGGTGAGC +
Preference number: 2 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGRRGAG*APPWVS
Trigger: GCTCACCCAAGGGGGCGCCCATCCGGCTCCCCTTCT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACAGAAACCCTCAGGGTaGTGGGACAGCCAGGAACGG +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTQKPSG*WDSQER
Trigger: CCGTTCCTGGCTGTCCCACCACCCTGAGGGTTTCTG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 90 bp AGATTGGAGGGTATGACTGGGTCTCATGTGACCATCCCACGGCCTTaGGCCACGCCCCCATTCCAGCAGCCTCTGCAGTCACAGATGCCC +
Preference number: 2 (lower is better)
Translates to: RLEGMTGSHVTIPRP*ATPPFQQPLQSQMP
Trigger: GGGCATCTGTGACTGCAGAGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCCAGTCATACCCTCCAATCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGACTGGGGAGCACGGGTaGCACAAGGCATTTCTGAGA +
Preference number: 2 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRTGEHG*HKAFLR
Trigger: TCTCAGAAATGCCTTGTGGCACCCGTGCTCCCCAGT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGATTTCTGCTTTCCCTaGTGGGAGACAGTCGGAGGT +
Preference number: 2 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGDFCFP*WETVGG
Trigger: ACCTCCGACTGTCTCCCACCAGGGAAAGCAGAAATC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
60% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCTGGTTCTCATCCTGTaGTTGGAACCCCTGGTCGTT +
Preference number: 2 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGLVLIL*LEPLVV
Trigger: AACGACCAGGGGTTCCAACCACAGGATGAGAACCAG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTCCTGGGCTGTAGAGTaGGGCAGGCCGGTACCGGCC +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSSWAVE*GRPVPA
Trigger: GGCCGGTACCGGCCTGCCCCACTCTACAGCCCAGGA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGGCAGCTGTTGCCCTaGAGGATAAGGAAGGGGCCG +
Preference number: 2 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGRQLLP*RIRKGP
Trigger: CGGCCCCTTCCTTATCCTCCAGGGCAACAGCTGCCT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGACCAGCTGCACCATTaGAAGCCCTGCAGCTCTTGG +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTDQLHH*KPCSSW
Trigger: CCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTCTCATGCAGAACTGTaGACCAGCCCCAGACGGGCC +
Preference number: 2 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGSHAEL*TSPRRA
Trigger: GGCCCGTCTGGGGCTGGTCCACAGTTCTGCATGAGA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCCCAGGGAAAGTATCTaGTGGGGAAAGGGGGTGCAT +
Preference number: 2 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRPRESI*WGKGVH
Trigger: ATGCACCCCCTTTCCCCACCAGATACTTTCCCTGGG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGTCTTGGCTGCAGTCATaGGCGAGGGTGGGCAGAGGC +
Preference number: 2 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWSWLQS*ARVGRG
Trigger: GCCTCTGCCCACCCTCGCCCATGACTGCAGCCAAGA...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAACACACCTGATTTCTaGTTTCCCTGGTGGGAGACA +
Preference number: 2 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGNTPDF*FPWWET
Trigger: TGTCTCCCACCAGGGAAAGCAGAAATCAGGTGTGTT...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTAACACACCTGATTTCTaGTTTCCCTGGTGGGAGACA +
Preference number: 2 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPNTPDF*FPWWET
Trigger: TGTCTCCCACCAGGGAAAGCAGAAATCAGGTGTGTT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGGGCCGCCTGCACCCTaGTCGAGCAAGGCCAGGCTT +
Preference number: 2 (lower is better)
Translates to: RESIWWGKGVHLSGENVLGPPAP*SSKARL
Trigger: AAGCCTGGCCTTGCTCGAGCAGGGTGCAGGCGGCCC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTCTTGGCTGCAGTCATaGGCGAGGGTGGGCAGAGGC +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSSWLQS*ARVGRG
Trigger: GCCTCTGCCCACCCTCGCCCATGACTGCAGCCAAGA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACAGACCAGCTCCTGGCTaGCTGACCTCTTGGCTGCAG +
Preference number: 2 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDRPAPG*LTSWLQ
Trigger: CTGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCT...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATCCTGGGCTGTAGAGTaGGGCAGGCCGGTACCGGCC +
Preference number: 2 (lower is better)
Translates to: VLGVRMCVQEARRDPCCISWAVE*GRPVPA
Trigger: GGCCGGTACCGGCCTGCCCCACTCTACAGCCCAGGA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGAAGCCCTGCAGCTCTTaGGGGAAGGCAGCTGTTGCC +
Preference number: 2 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWKPCSS*GKAAVA
Trigger: GGCAACAGCTGCCTTCCCCCAAGAGCTGCAGGGCTT...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGCCCAGACAGGGAGCTaGACCAGCTGCACCATTGGA +
Preference number: 2 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDAQTGS*TSCTIG
Trigger: TCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGGCTTTCCTGGTACTTaGGGTCAGGATGTGTGTACA +
Preference number: 2 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRGFPGT*GQDVCT
Trigger: TGTACACACATCCTGACCCCAAGTACCAGGAAAGCC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATCAGCTCCTGGCTGGCTaGCCTCTTGGCTGCAGTCAT +
Preference number: 2 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHQLLAG*PLGCSH
Trigger: ATGACTGCAGCCAAGAGGTCAGCCAGCCAGGAGCTG...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATCTTGGCTGCAGTCATaGGCGAGGGTGGGCAGAGGC +
Preference number: 2 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGSWLQS*ARVGRG
Trigger: GCCTCTGCCCACCCTCGCCCATGACTGCAGCCAAGA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGCTGGCTGACCTCTTaGCTGCAGTCATGGGCGAGG +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGWLTS*LQSWAR
Trigger: CCTCGCCCATGACTGCAGCCAAGAGGTCAGCCAGCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCAGACCAGCTCCTGGCTaGCTGACCTCTTGGCTGCAG +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSRPAPG*LTSWLQ
Trigger: CTGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCT...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGCTCAGACCAGCTCCTaGCTGGCTGACCTCTTGGCT +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSAQTSS*LADLLA
Trigger: AGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACTCCCTGCATCAAACTaGCCATGGAAACGGAAACCA +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLPASN*PWKRKP
Trigger: TGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGACCAGCTGCACCATTaGAAGCCCTGCAGCTCTTGG +
Preference number: 2 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLDQLHH*KPCSSW
Trigger: CCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAAGGGAAAGTATCTGGTaGGGAAAGGGGGTGCATCTT +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTRESIW*GKGVHL
Trigger: AAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGAGGCTATCCAGAGGTaGTGGGACCCCAGGGAAAGT +
Preference number: 2 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLEAIQR*WDPRES
Trigger: ACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 90 bp GCTTTCCCTGGTGGGAGACAGTCGGAGGTACTAGGGAAATATGGCTaGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGC +
Preference number: 2 (lower is better)
Translates to: AFPGGRQSEVLGKYG*DSNLSRTAVQRQSS
Trigger: GCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATATTTCCCTAGTACCTCCGACTGTCTCCCACCAGGGAAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGAATAGACAACACACCTaGTTTCTGCTTTCCCTGGTG +
Preference number: 2 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRNRQHT*FLLSLV
Trigger: CACCAGGGAAAGCAGAAATCAGGTGTGTTGTCTATT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATCACCATTGGAAGCCCTaGAGCTCTTGGGGGAAGGCA +
Preference number: 2 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHHHWKP*SSWGKA
Trigger: TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTG...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCCCTTGTCGCAAAGGTaGGGAAAATTCTTTTCCACT +
Preference number: 2 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRPLSQR*GKFFST
Trigger: AGTGGAAAAGAATTTTCCCCACCTTTGCGACAAGGG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAATTGGAGGGTATGACTaGGTCTCATGTGACCATCCC +
Preference number: 2 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVIGGYD*VSCDHP
Trigger: GGGATGGTCACATGAGACCCAGTCATACCCTCCAAT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTAGGCAGCTGTTGCCCTaGAGGATAAGGAAGGGGCCG +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLARQLLP*RIRKGP
Trigger: CGGCCCCTTCCTTATCCTCCAGGGCAACAGCTGCCT...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGCCCAGACAGGGAGCTaGACCAGCTGCACCATTGGA +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAAQTGS*TSCTIG
Trigger: TCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAAAACCCTCAGGGTGGTaGGACAGCCAGGAACGGGCA +
Preference number: 2 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGKPSGW*DSQERA
Trigger: TGCCCGTTCCTGGCTGTCCCACCACCCTGAGGGTTT...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAAATAGACAACACACCTaGTTTCTGCTTTCCCTGGTG +
Preference number: 2 (lower is better)
Translates to: APCSSKARLLSLHQTGHGNRQHT*FLLSLV
Trigger: CACCAGGGAAAGCAGAAATCAGGTGTGTTGTCTATT...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCATTCCAGCAGCCTCTaGAGTCACAGATGCCCCTGT +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSHSSSL*SHRCPC
Trigger: ACAGGGGCATCTGTGACTGCAGAGGCTGCTGGAATG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGGGACCGCCATCACTaGCCCCACCCAAATACTTTC +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGDRHH*PHPNTF
Trigger: GAAAGTATTTGGGTGGGGGCAGTGATGGCGGTCCCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCAGGCTTCTCTCCCTaGATCAAACTGGCCATGGAA +
Preference number: 2 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPGFSP*IKLAME
Trigger: TTCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAGCTCAGACCAGCTCCTaGCTGGCTGACCTCTTGGCT +
Preference number: 2 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIAQTSS*LADLLA
Trigger: AGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGC...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACCCTTGTCGCAAAGGTaGGGAAAATTCTTTTCCACT +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTPLSQR*GKFFST
Trigger: AGTGGAAAAGAATTTTCCCCACCTTTGCGACAAGGG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 90 bp GGACCCTGGTGGTCATCTCTTCTGATGACCACCAAGGATGGAATATaGCACTCATGTGGAGAACAGAAACCCTCAGGGTGGTGGGACAGC +
Preference number: 2 (lower is better)
Translates to: GPWWSSLLMTTKDGI*HSCGEQKPSGWWDS
Trigger: GCTGTCCCACCACCCTGAGGGTTTCTGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGACCACCAGGGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAATGGATGGGATGTATTaGAAGGAAATAAACCGCAGT +
Preference number: 2 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAMDGMY*KEINRS
Trigger: ACTGCGGTTTATTTCCTTTCAATACATCCCATCCAT...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGTGAGAATGTTCTCATaGAGAACTGTGGACCAGCCC +
Preference number: 2 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWVRMFS*RTVDQP
Trigger: GGGCTGGTCCACAGTTCTGCATGAGAACATTCTCAC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTTCTGCTTTCCCTGGTaGGAGACAGTCGGAGGTACT +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSFCFPW*ETVGGT
Trigger: AGTACCTCCGACTGTCTCCCACCAGGGAAAGCAGAA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGATTTCTGCTTTCCCTaGTGGGAGACAGTCGGAGGT +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSDFCFP*WETVGG
Trigger: ACCTCCGACTGTCTCCCACCAGGGAAAGCAGAAATC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACCTCCCTGCATCAAACTaGCCATGGAAACGGAAACCA +
Preference number: 2 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDLPASN*PWKRKP
Trigger: TGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAG...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACCCAGGGAAAGTATCTaGTGGGGAAAGGGGGTGCAT +
Preference number: 2 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGPRESI*WGKGVH
Trigger: ATGCACCCCCTTTCCCCACCAGATACTTTCCCTGGG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAATGGATGGGATGTATTaGAAGGAAATAAACCGCAGT +
Preference number: 2 (lower is better)
Translates to: APCSSKARLLSLHQTGHGMDGMY*KEINRS
Trigger: ACTGCGGTTTATTTCCTTTCAATACATCCCATCCAT...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACATTCCAGCAGCCTCTaGAGTCACAGATGCCCCTGT +
Preference number: 2 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIHSSSL*SHRCPC
Trigger: ACAGGGGCATCTGTGACTGCAGAGGCTGCTGGAATG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACCAGGCTTCTCTCCCTaGATCAAACTGGCCATGGAA +
Preference number: 2 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGPGFSP*IKLAME
Trigger: TTCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGTGAGAATGTTCTCATaGAGAACTGTGGACCAGCCC +
Preference number: 2 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSVRMFS*RTVDQP
Trigger: GGGCTGGTCCACAGTTCTGCATGAGAACATTCTCAC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTTCTGCTTTCCCTGGTaGGAGACAGTCGGAGGTACT +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAFCFPW*ETVGGT
Trigger: AGTACCTCCGACTGTCTCCCACCAGGGAAAGCAGAA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATCTCCCTGCATCAAACTaGCCATGGAAACGGAAACCA +
Preference number: 2 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHLPASN*PWKRKP
Trigger: TGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAG...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAACCCAAATACTTTCATaGATGGGATGTATTGAAAGG +
Preference number: 2 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTTQILS*MGCIER
Trigger: CCTTTCAATACATCCCATCCATGAAAGTATTTGGGT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATATATACTCTGTGCATaGGCCTGCCATGCTATCTGC +
Preference number: 2 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGYILCA*ACHAIC
Trigger: GCAGATAGCATGGCAGGCTCATGCACAGAGTATATA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTAACACACCTGATTTCTaGTTTCCCTGGTGGGAGACA +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLANTPDF*FPWWET
Trigger: TGTCTCCCACCAGGGAAAGCAGAAATCAGGTGTGTT...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATTGGAGGGTATGACTaGGTCTCATGTGACCATCCC +
Preference number: 2 (lower is better)
Translates to: RESIWWGKGVHLSGENVLIGGYD*VSCDHP
Trigger: GGGATGGTCACATGAGACCCAGTCATACCCTCCAAT...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTAGAAGGGGAGCCGGATaGGCGCCCCCTTGGGTGAGC +
Preference number: 2 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVRRGAG*APPWVS
Trigger: GCTCACCCAAGGGGGCGCCCATCCGGCTCCCCTTCT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGAAAAACAGAGTCCCTaGGATCAGGATAGACTCTTG +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAEKQSP*DQDRLL
Trigger: CAAGAGTCTATCCTGATCCCAGGGACTCTGTTTTTC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCCAAGGATGGAATATTaGACTCATGTGGAGAACAGA +
Preference number: 2 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAPRMEY*THVENR
Trigger: TCTGTTCTCCACATGAGTGCAATATTCCATCCTTGG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR TCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAAATAGACAACACACCTaGTTTCTGCTTTCCCTGGTG +
Preference number: 2 (lower is better)
Translates to: VISSDDHQGWNIALMWRTNRQHT*FLLSLV
Trigger: CACCAGGGAAAGCAGAAATCAGGTGTGTTGTCTATT...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCACCCAAATACTTTCATaGATGGGATGTATTGAAAGG +
Preference number: 2 (lower is better)
Translates to: RESIWWGKGVHLSGENVLTQILS*MGCIER
Trigger: CCTTTCAATACATCCCATCCATGAAAGTATTTGGGT...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGAAGTGAGGACTGCCTaGCTTTCCTGGTACTTGGGG +
Preference number: 2 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVEVRTA*LSWYLG
Trigger: CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGTTGTATATACTCTGTaGATGAGCCTGCCATGCTAT +
Preference number: 2 (lower is better)
Translates to: VISSDDHQGWNIALMWRTVVYTL*MSLPCY
Trigger: ATAGCATGGCAGGCTCATGCACAGAGTATATACAAC...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGATTTCTGCTTTCCCTaGTGGGAGACAGTCGGAGGT +
Preference number: 2 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVDFCFP*WETVGG
Trigger: ACCTCCGACTGTCTCCCACCAGGGAAAGCAGAAATC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGTGAGAATGTTCTCATaGAGAACTGTGGACCAGCCC +
Preference number: 2 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVVRMFS*RTVDQP
Trigger: GGGCTGGTCCACAGTTCTGCATGAGAACATTCTCAC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTAATATTGCACTCATGTaGAGAACAGAAACCCTCAGG +
Preference number: 2 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVNIALM*RTETLR
Trigger: CCTGAGGGTTTCTGTTCTCCACATGAGTGCAATATT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp AGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCCCCGTaGGACCAGCCTGGCTCTCCCCCTGGAGCAGCTAGG +
Preference number: 3 (lower is better)
Translates to: RTAVQRQSSRSP*DQPGSPPGAAR
Trigger: CCTAGCTGCTCCAGGGGGAGAGCCAGGCTGGTCCCACGGGGACCGGCTGCTCTGCCGCTGCACCGCAGTTCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp GATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTaGGGCAGGCCGGTACCGGCCCGCAGGCTGATCCTG +
Preference number: 3 (lower is better)
Translates to: DTWLLPYSWAVE*GRPVPARRLIL
Trigger: CAGGATCAGCCTGCGGGCCGGTACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGTGGCTGGCTGACCTCTaGGCTGCAGTCATGGGCGAG +
Preference number: 3 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGWLADL*AAVMGE
Trigger: CTCGCCCATGACTGCAGCCAAGAGGTCAGCCAGCCA...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTTGGCTGGCTGACCTCTaGGCTGCAGTCATGGGCGAG +
Preference number: 3 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPWLADL*AAVMGE
Trigger: CTCGCCCATGACTGCAGCCAAGAGGTCAGCCAGCCA...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp GTACCGGCCCGCAGGCTGATCCTGGTTCTCATCCTGTaGTTGGAACCCCTGGTCGTTCCAGGGGACCGCCAT +
Preference number: 3 (lower is better)
Translates to: VPARRLILVLIL*LEPLVVPGDRH
Trigger: ATGGCGGTCCCCTGGAACGACCAGGGGTTCCAACCACAGGATGAGAACCAGGATCAGCCTGCGGGCCGGTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACAGGAACGGGCACCCTaGGTGTTCCTGTGGACCACC +
Preference number: 3 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTQERAP*VFLWTT
Trigger: GGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 72 bp CCCCAAATTCTGGCCCAGACAGGGAGCTGGACCAGCTaGACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGG +
Preference number: 3 (lower is better)
Translates to: PQILAQTGSWTS*TIGSPAALGGR
Trigger: CCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGCCAGAATTTGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp TCTGGCCCAGACAGGGAGCTGGACCAGCTGCACCATTaGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCTGTT +
Preference number: 3 (lower is better)
Translates to: SGPDRELDQLHH*KPCSSWGKAAV
Trigger: AACAGCTGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGCCAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp CCAGACGGGCCCCAAATTCTGGCCCAGACAGGGAGCTaGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTT +
Preference number: 3 (lower is better)
Translates to: PDGPQILAQTGS*TSCTIGSPAAL
Trigger: AAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGCCAGAATTTGGGGCCCGTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp AGAACTGTGGACCAGCCCCAGACGGGCCCCAAATTCTaGCCCAGACAGGGAGCTGGACCAGCTGCACCATTG +
Preference number: 3 (lower is better)
Translates to: RTVDQPQTGPKF*PRQGAGPAAPL
Trigger: CAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGCCAGAATTTGGGGCCCGTCTGGGGCTGGTCCACAGTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGGACCAGCTGCACCATaGGAAGCCCTGCAGCTCTTG +
Preference number: 3 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTGPAAP*EALQLL
Trigger: CAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 72 bp GGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTaGTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAG +
Preference number: 3 (lower is better)
Translates to: GEGSTQDNSLST*SGAPGYWGSGQ
Trigger: CTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGACCATCCCACGGCCTTaGGCCACGCCCCCATTCCAG +
Preference number: 3 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLTIPRP*ATPPFQ
Trigger: CTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGT...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGTTGGCCCCCAAGAGATaGGAGGGTATGACTGGGTCT +
Preference number: 3 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRLAPKR*EGMTGS
Trigger: AGACCCAGTCATACCCTCCAATCTCTTGGGGGCCAA...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR TCA 72 bp TTGAGAGAAGGGGAGCCGGATGGGCGCCCCCTTGGGTaGGCAGCATCGCCTTTCTACTGTTGTGACTCCAGA +
Preference number: 3 (lower is better)
Translates to: LREGEPDGRPLG*AASPFYCCDSR
Trigger: TCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTCACCCAAGGGGGCGCCCATCCGGCTCCCCTTCTCTCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 72 bp AATATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTaGAGCGGCAGAGCAGCCGGTCCCCGTGGGACCAGC +
Preference number: 3 (lower is better)
Translates to: NMAWILISRELR*SGRAAGPRGTS
Trigger: GCTGGTCCCACGGGGACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 72 bp CACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCTaGAGTCACAGATGCCCCTGTTGGAATTCAACTAGG +
Preference number: 3 (lower is better)
Translates to: HGLWPRPHSSSL*SHRCPCWNSTR
Trigger: CCTAGTTGAATTCCAACAGGGGCATCTGTGACTGCAGAGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGTTCTCATCCTGTGGTaGGAACCCCTGGTCGTTCCA +
Preference number: 3 (lower is better)
Translates to: APCSSKARLLSLHQTGHGVLILW*EPLVVP
Trigger: TGGAACGACCAGGGGTTCCAACCACAGGATGAGAAC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGAAGCCCTGCAGCTCTaGGGGGAAGGCAGCTGTTGC +
Preference number: 3 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDEALQL*GEGSCC
Trigger: GCAACAGCTGCCTTCCCCCAAGAGCTGCAGGGCTTC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGGGGAAGGCAGCTGTaGCCCTGGAGGATAAGGAAG +
Preference number: 3 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGGRQL*PWRIRK
Trigger: CTTCCTTATCCTCCAGGGCAACAGCTGCCTTCCCCC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
58% GC, longest homopolymer 9 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACATGGCTATCCACACTaGAGGCTATCCAGAGGTGGT +
Preference number: 3 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTHGYPH*RLSRGG
Trigger: ACCACCTCTGGATAGCCTCAAGTGTGGATAGCCATG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR TCA 72 bp CAGAACCTCTGGCTCAGCCTCATGGCTATCCACACTTaGGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAG +
Preference number: 3 (lower is better)
Translates to: QNLWLSLMAIHT*GYPEVVGPQGK
Trigger: CTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGGATAGCCATGAGGCTGAGCCAGAGGTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp TTGCACTCATGTGGAGAACAGAAACCCTCAGGGTGGTaGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTG +
Preference number: 3 (lower is better)
Translates to: LHSCGEQKPSGW*DSQERAPLVFL
Trigger: CAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCACCCTGAGGGTTTCTGTTCTCCACATGAGTGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAACCATCCCACGGCCTTaGGCCACGCCCCCATTCCAG +
Preference number: 3 (lower is better)
Translates to: VLGVRMCVQEARRDPCCITIPRP*ATPPFQ
Trigger: CTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGT...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGAAGCCCTGCAGCTCTaGGGGGAAGGCAGCTGTTGC +
Preference number: 3 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGEALQL*GEGSCC
Trigger: GCAACAGCTGCCTTCCCCCAAGAGCTGCAGGGCTTC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGACCAGCTGCACCATaGGAAGCCCTGCAGCTCTTG +
Preference number: 3 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGPAAP*EALQLL
Trigger: CAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGGATCAGGGTCTAGGTaGAGAGAAGGGGAGCCGGAT +
Preference number: 3 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDGSGSR*REGEPD
Trigger: ATCCGGCTCCCCTTCTCTCAACCTAGACCCTGATCC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 72 bp CCACGCCCCCATTCCAGCAGCCTCTGCAGTCACAGATaGCCCTGTTGGAATTCAACTAGGCTGAGAACAGTG +
Preference number: 3 (lower is better)
Translates to: PRPHSSSLCSHR*PCWNSTRLRTV
Trigger: CACTGTTCTCAGCCTAGTTGAATTCCAACAGGGGCATCTGTGACTGCAGAGGCTGCTGGAATGGGGGCGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 72 bp GGAAGCCTTGGCCGAGTGGACACTGGGGAGCACGGGTaGCACAAGGCATTTCTGAGAACAAAGGCTTTTGGT +
Preference number: 3 (lower is better)
Translates to: GSLGRVDTGEHG*HKAFLRTKAFG
Trigger: ACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCCAGTGTCCACTCGGCCAAGGCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp TTCACAGTTGGCCCCCAAGAGATTGGAGGGTATGACTaGGTCTCATGTGACCATCCCACGGCCTTTGGCCAC +
Preference number: 3 (lower is better)
Translates to: FTVGPQEIGGYD*VSCDHPTAFGH
Trigger: GTGGCCAAAGGCCGTGGGATGGTCACATGAGACCCAGTCATACCCTCCAATCTCTTGGGGGCCAACTGTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp TCATGGCTATCCACACTTGAGGCTATCCAGAGGTGGTaGGACCCCAGGGAAAGTATCTGGTGGGGAAAGGGG +
Preference number: 3 (lower is better)
Translates to: SWLSTLEAIQRW*DPRESIWWGKG
Trigger: CCCCTTTCCCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGGATAGCCATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp GCCTCATGGCTATCCACACTTGAGGCTATCCAGAGGTaGTGGGACCCCAGGGAAAGTATCTGGTGGGGAAAG +
Preference number: 3 (lower is better)
Translates to: ASWLSTLEAIQR*WDPRESIWWGK
Trigger: CTTTCCCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGGATAGCCATGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGGGGAAGGCAGCTGTaGCCCTGGAGGATAAGGAAG +
Preference number: 3 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGGRQL*PWRIRK
Trigger: CTTCCTTATCCTCCAGGGCAACAGCTGCCTTCCCCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGGGGGAAGGCAGCTGTaGCCCTGGAGGATAAGGAAG +
Preference number: 3 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGGGRQL*PWRIRK
Trigger: CTTCCTTATCCTCCAGGGCAACAGCTGCCTTCCCCC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR TCA 72 bp TGGACACTGGGGAGCACGGGTGCCACAAGGCATTTCTaGGAACAAAGGCTTTTGGTCCATGGGTCTAGCCTG +
Preference number: 3 (lower is better)
Translates to: WTLGSTGATRHF*EQRLLVHGSSL
Trigger: CAGGCTAGACCCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCCAGTGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR GCA 72 bp CTGCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTaGATCAAACTGGCCATGGAAACGGAAACCAGAAAT +
Preference number: 3 (lower is better)
Translates to: LHPARARPGFSP*IKLAMETETRN
Trigger: ATTTCTGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGTTCTCATCCTGTGGTaGGAACCCCTGGTCGTTCCA +
Preference number: 3 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHVLILW*EPLVVP
Trigger: TGGAACGACCAGGGGTTCCAACCACAGGATGAGAAC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGGACCAGCTGCACCATaGGAAGCCCTGCAGCTCTTG +
Preference number: 3 (lower is better)
Translates to: RESIWWGKGVHLSGENVLGPAAP*EALQLL
Trigger: CAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGGATCAGGGTCTAGGTaGAGAGAAGGGGAGCCGGAT +
Preference number: 3 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGGSGSR*REGEPD
Trigger: ATCCGGCTCCCCTTCTCTCAACCTAGACCCTGATCC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp ATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTaGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTT +
Preference number: 3 (lower is better)
Translates to: IQRWWDPRESIW*GKGVHLSGENV
Trigger: AACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR TCA 72 bp GGCCAGAAGGGACCCTTGTTGTATATACTCTGTGCATaGGCCTGCCATGCTATCTGCCCTGCTGAGTGGATA +
Preference number: 3 (lower is better)
Translates to: GQKGPLLYILCA*ACHAICPAEWI
Trigger: TATCCACTCAGCAGGGCAGATAGCATGGCAGGCTCATGCACAGAGTATATACAACAAGGGTCCCTTCTGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp CGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTaGTCCATGGGTCTAGCCTGCTCTTTCCATCATGGG +
Preference number: 3 (lower is better)
Translates to: RVPQGISENKGF*SMGLACSFHHG
Trigger: CCCATGATGGAAAGAGCAGGCTAGACCCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTGGCTTTCCTGGTACTaGGGGTCAGGATGTGTGTAC +
Preference number: 3 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAWLSWY*GSGCVY
Trigger: GTACACACATCCTGACCCCAAGTACCAGGAAAGCCA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACCATGGATGGGATGTATaGAAAGGAAATAAACCGCAG +
Preference number: 3 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDHGWDV*KGNKPQ
Trigger: CTGCGGTTTATTTCCTTTCAATACATCCCATCCATG...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp TACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTaGGGAGGAGGAGTCACGCCATTTGCGTGTACACAC +
Preference number: 3 (lower is better)
Translates to: YKIRAFYHVSHS*GGGVTPFACTH
Trigger: GTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAACCAAGGATGGAATATaGCACTCATGTGGAGAACAG +
Preference number: 3 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGTKDGI*HSCGEQ
Trigger: CTGTTCTCCACATGAGTGCAATATTCCATCCTTGGT...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp ACCCTGGTGGTCATCTCTTCTGATGACCACCAAGGATaGAATATTGCACTCATGTGGAGAACAGAAACCCTC +
Preference number: 3 (lower is better)
Translates to: TLVVISSDDHQG*NIALMWRTETL
Trigger: GAGGGTTTCTGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGACCACCAGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CCA 72 bp CAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATaGAAACGGAAACCAGAAATAACTTGGAATATTCAG +
Preference number: 3 (lower is better)
Translates to: QGQASLPASNWP*KRKPEITWNIQ
Trigger: CTGAATATTCCAAGTTATTTCTGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR-3UTR CAA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCATGGATGGGATGTATaGAAAGGAAATAAACCGCAG +
Preference number: 3 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVHGWDV*KGNKPQ
Trigger: CTGCGGTTTATTTCCTTTCAATACATCCCATCCATG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCGCTGGGCGTGGGTGTaGGCGTGGGGGCTGCTACCC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGRWAWV*AWGLLP
Trigger: GGGTAGCAGCCCCCACGCGCACACCCACGCCCAGCG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCAGGGCCTGCCTCCTTaGAGGGCCCCTCGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPQGLPP*RAPRQA
Trigger: TGCCTGCCGAGGGGCCCTGCAAGGAGGCAGGCCCTG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCAGGACCCGATGGGATaGGCAGGGGTGGCTCGGGGC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGQDPMG*AGVARG
Trigger: GCCCCGAGCCACCCCTGCCCATCCCATCGGGTCCTG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGCTGAGGGGCGGGGGTaGCCCGGTAGGCAGGCCAGA +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRAEGRG*PGRQAR
Trigger: TCTGGCCTGCCTACCGGGCCACCCCCGCCCCTCAGC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCCCGGGCCCCATACATaGGGGGCCACAGGGAGGCCT +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGPGPHT*GATGRP
Trigger: AGGCCTCCCTGTGGCCCCCCATGTATGGGGCCCGGG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTTGCGCTTTCTTGGCCTaGCAGGCCCCCGCCGTGCAG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPCAFLA*QAPAVQ
Trigger: CTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCA...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGATGGTGCAGGACCGTaGCAGGGCGGCGCTCTGCTC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGDGAGP*QGGALL
Trigger: GAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
67% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCTGGCCCCTGCACCTaGACCAGCCACCCCAGCCCT +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAAGPCT*TSHPSP
Trigger: AGGGCTGGGGTGGCTGGTGCAGGTGCAGGGGCCAGC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGCTGAGGGGCGGGGGTaGCCCGGTAGGCAGGCCAGA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGAEGRG*PGRQAR
Trigger: TCTGGCCTGCCTACCGGGCCACCCCCGCCCCTCAGC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTTGCGATGCCCACGGGTaGCTGCCTCACCTCCCCGTC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPCDAHG*LPHLPV
Trigger: GACGGGGAGGTGAGGCAGCCACCCGTGGGCATCGCA...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGGCGCTGGGCCGAGGTaGTGGTGTGGGGCAACTCGC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRGAGPR*WCGATR
Trigger: GCGAGTTGCCCCACACCACCACCTCGGCCCAGCGCC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGGCGCTGGGCCGAGGTaGTGGTGTGGGGCAACTCGC +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAGAGPR*WCGATR
Trigger: GCGAGTTGCCCCACACCACCACCTCGGCCCAGCGCC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGGCCTTCTTCTTGCCTaGTGCACCCGGGGGCCGCCG +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRGLLLA*CTRGPP
Trigger: CGGCGGCCCCCGGGTGCACCAGGCAAGAAGAAGGCC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGTCTGAGGCCCCCGTaGGGGACTTGGCACCTGAGG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGLRPP*GTWHLR
Trigger: CCTCAGGTGCCAAGTCCCCCACGGGGGCCTCAGACC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCTGCGGCCTAGGAAGTaGTCTGAGGCCCCCGTGGGG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPLRPRK*SEAPVG
Trigger: CCCCACGGGGGCCTCAGACCACTTCCTAGGCCGCAG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGCATCCCTGGCCCTTaGGAGCAGCCCAGGCTCTTC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGIPGP*EQPRLF
Trigger: GAAGAGCCTGGGCTGCTCTCAAGGGCCAGGGATGCC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGGCATCCCTGGCCCTTaGGAGCAGCCCAGGCTCTTC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGGIPGP*EQPRLF
Trigger: GAAGAGCCTGGGCTGCTCTCAAGGGCCAGGGATGCC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
66% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACAGGGCCTGCCTCCTTaGAGGGCCCCTCGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGQGLPP*RAPRQA
Trigger: TGCCTGCCGAGGGGCCCTGCAAGGAGGCAGGCCCTG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACCGGGGTGCAGGGCCTaGCTCCTTGCAGGGCCCCTC +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAPGCRA*LLAGPL
Trigger: GAGGGGCCCTGCAAGGAGGCAGGCCCTGCACCCCGG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGGTGGGGGCGGCCCTaGCCTGCCGCCCACTGTTGG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGRWGRP*PAAHCW
Trigger: CCAACAGTGGGCGGCAGGGCAGGGCCGCCCCCACCT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGTCCACAAGGAGGGACTaGGGGTGCGGGGCAGCCAGT +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGSTRRD*GCGAAS
Trigger: ACTGGCTGCCCCGCACCCGCAGTCCCTCCTTGTGGA...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGGGGTAGGTTCTGGTaGAGGGCGGGGTGTCCGAGA +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGGRFW*RAGCPR
Trigger: TCTCGGACACCCCGCCCTGCACCAGAACCTACCCCC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGGCGGCGCTCTGCTCTaGGCTGAGCTGTACACCGGC +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAGGALL*AELYTG
Trigger: GCCGGTGTACAGCTCAGCGCAGAGCAGAGCGCCGCC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGATGGTGCAGGACCGTaGCAGGGCGGCGCTCTGCTC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRDGAGP*QGGALL
Trigger: GAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCAGAGGGAGAGGATGTaGGGCCACTGGGGTGTGCCG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPQRERM*GHWGVP
Trigger: CGGCACACCCCAGTGGCCCCACATCCTCTCCCTCTG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCAGAGGGAGAGGATGTaGGGCCACTGGGGTGTGCCG +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGQRERM*GHWGVP
Trigger: CGGCACACCCCAGTGGCCCCACATCCTCTCCCTCTG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGGCTGCAGGACCCGATaGGATGGGCAGGGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRGCRTR*DGQGWL
Trigger: GAGCCACCCCTGCCCATCCCATCGGGTCCTGCAGCC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGTGCCTCCTGCACAGCTaGCCAGGGAGGCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGCLLHS*PGRPCP
Trigger: TGGGCAAGGCCTCCCTGGCCAGCTGTGCAGGAGGCA...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCACCAGGGGGTAGGTTCTaGTGCAGGGCGGGGTGTCCG +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAPGGRF*CRAGCP
Trigger: CGGACACCCCGCCCTGCACCAGAACCTACCCCCTGG...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCCAGCGTGGTCAGGTTaGTTCCAGCCCGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPPAWSG*FQPAGP
Trigger: AGGGCCAGCGGGCTGGAACCAACCTGACCACGCTGG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCCTGGGTGGCATCCCTaGCCCTTGAGAGCAGCCCAG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPPGWHP*PLRAAQ
Trigger: CTGGGCTGCTCTCAAGGGCCAGGGATGCCACCCAGG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGTGCTACCACTGGGGCTaGCCCCTGCACCTGCACCAG +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGCYHWG*PLHLHQ
Trigger: CTGGTGCAGGTGCAGGGGCCAGCCCCAGTGGTAGCA...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGGGTTGCAGGGTCCTaGCACTGCCCGCATACAGCA +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGVAGS*HCPHTA
Trigger: TGCTGTATGCGGGCAGTGTCAGGACCCTGCAACCCC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGTGAGGCAGCCTCGATaGGGTCCCGGCTGCAGGACC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTVRQPR*GPGCRT
Trigger: GGTCCTGCAGCCGGGACCGCATCGAGGCTGCCTCAC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACAGGGCCTGCCTCCTTaGAGGGCCCCTCGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAQGLPP*RAPRQA
Trigger: TGCCTGCCGAGGGGCCCTGCAAGGAGGCAGGCCCTG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCCGGGGTGCAGGGCCTaGCTCCTTGCAGGGCCCCTC +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGPGCRA*LLAGPL
Trigger: GAGGGGCCCTGCAAGGAGGCAGGCCCTGCACCCCGG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAAGGCTCCACGGGGCCTaGCACCTCCTTGGCACAGCG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTRLHGA*HLLGTA
Trigger: CGCTGTGCCAAGGAGGTGGCAGGCCCCGTGGAGCCT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACCTGGCCAAGGCCACTaGGATGCCCACGGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGPGQGH*DAHGWL
Trigger: CAGCCACCCGTGGGCATCGCAGTGGCCTTGGCCAGG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGCCAGTGTGGCCAGGTaGTGCAGGTTGAAGGCCAGC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGASVAR*CRLKAS
Trigger: GCTGGCCTTCAACCTGCAGCACCTGGCCACACTGGC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
64% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCATGGTCATGCCTGCGCTaGAGGCGAGCCAGCTCCCGT +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAWSCLR*RRASSR
Trigger: ACGGGAGCTGGCTCGCCTGCAGCGCAGGCATGACCA...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTAGGCTCTCTGGGAGCTaGCTCTGTCCCCAGGAGTGC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPRLSGS*LCPQEC
Trigger: GCACTCCTGGGGACAGAGGCAGCTCCCAGAGAGCCT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGATGGCCTTGGCGTTaGGGGCTGACAGAGCGATGG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGWPWR*GLTERW
Trigger: CCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCAGAGGGAGAGGATGTaGGGCCACTGGGGTGTGCCG +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRQRERM*GHWGVP
Trigger: CGGCACACCCCAGTGGCCCCACATCCTCTCCCTCTG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGGCTGCAGGACCCGATaGGATGGGCAGGGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGGCRTR*DGQGWL
Trigger: GAGCCACCCCTGCCCATCCCATCGGGTCCTGCAGCC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGCCACCAAGTGCTGCTaGTGCCGGATCCTGGCTACC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPATKCC*CRILAT
Trigger: GGTAGCCAGGATCCGGCACCAGCAGCACTTGGTGGC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGGAGTGGGCAGCTCCTaGGACAGGAGGGCTGCCTGC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTGVGSS*DRRAAC
Trigger: GCAGGCAGCCCTCCTGTCCCAGGAGCTGCCCACTCC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCACCAGCGTGGTCAGGTTaGTTCCAGCCCGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAPAWSG*FQPAGP
Trigger: AGGGCCAGCGGGCTGGAACCAACCTGACCACGCTGG...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGGGCACGGAGGCTGCTaGGGTCTGAGGGTCTGTCAG +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAGHGGC*GLRVCQ
Trigger: CTGACAGACCCTCAGACCCCAGCAGCCTCCGTGCCC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGGCCTTCTTCTTGCCTaGTGCACCCGGGGGCCGCCG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGGLLLA*CTRGPP
Trigger: CGGCGGCCCCCGGGTGCACCAGGCAAGAAGAAGGCC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCCCCCGTGGGGGACTTaGCACCTGAGGTTAGGAGGT +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPPPWGT*HLRLGG
Trigger: ACCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACTGCGGCCTAGGAAGTaGTCTGAGGCCCCCGTGGGG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLRPRK*SEAPVG
Trigger: CCCCACGGGGGCCTCAGACCACTTCCTAGGCCGCAG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGGACGCAGCTGGCTTTaGGGCTGCCCAGGCCCACGA +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGGRSWL*GCPGPR
Trigger: TCGTGGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTTTTGCATTCTGGGGGTaGGCCTGGGGCCTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPFAFWG*AWGLCL
Trigger: CAGACAGAGGCCCCAGGCTCACCCCCAGAATGCAAA...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGCAGCCCCTTGCTCTTaGCCTTTGGCTTCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGAAPCS*PLASAG
Trigger: CCCAGCTGAAGCCAAAGGTCAAGAGCAAGGGGCTGC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGCAGCCCCTTGCTCTTaGCCTTTGGCTTCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPAAPCS*PLASAG
Trigger: CCCAGCTGAAGCCAAAGGTCAAGAGCAAGGGGCTGC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGGTCTGAGCCACTGCTaGCCAGCTCAGCAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTGLSHC*PAQQGA
Trigger: AGCCCCCTGCTGAGCTGGTCAGCAGTGGCTCAGACC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGCTTTCCGCTTGGTCTaGGCCACTGCTGACCAGCTC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPAFRLV*ATADQL
Trigger: GAGCTGGTCAGCAGTGGCTCAGACCAAGCGGAAAGC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAACTCGCCAGGCTGCTaGAGGAGTCAGCTCGGAAGC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGNSPGC*RSQLGS
Trigger: GCTTCCGAGCTGACTCCTTCAGCAGCCTGGCGAGTT...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGGCTCCACGGGGCCTaGCACCTCCTTGGCACAGCG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGRLHGA*HLLGTA
Trigger: CGCTGTGCCAAGGAGGTGGCAGGCCCCGTGGAGCCT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCCATCTGGGCCTGCATaGAGCTGCAGGCAGGGGAAA +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGPSGPA*SCRQGK
Trigger: TTTCCCCTGCCTGCAGCTGCATGCAGGCCCAGATGG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGTCCTTTCCATCACCTaGCACGGCACAGGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPVLSIT*HGTGLC
Trigger: GCAGAGGCCTGTGCCGTGGCAGGTGATGGAAAGGAC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGGGCCTCATGCTCCCTaGTGCGGGCACAGTCGGGTC +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGGPHAP*CGHSRV
Trigger: GACCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACCTGGCCAAGGCCACTaGGATGCCCACGGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAPGQGH*DAHGWL
Trigger: CAGCCACCCGTGGGCATCGCAGTGGCCTTGGCCAGG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATCCACAAGGAGGGACTaGGGGTGCGGGGCAGCCAGT +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGSTRRD*GCGAAS
Trigger: ACTGGCTGCCCCGCACCCGCAGTCCCTCCTTGTGGA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATGGCGGAGGAGGGGGTaGCCTTGGCCATGGGGGTTA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGWRRRG*PWPWGL
Trigger: TAACCCCCATGGCCAAGGGCACCCCCTCCTCCGCCA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATGGTCATGCCTGCGCTaGAGGCGAGCCAGCTCCCGT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTWSCLR*RRASSR
Trigger: ACGGGAGCTGGCTCGCCTGCAGCGCAGGCATGACCA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATGCGCTTTCTTGGCCTaGCAGGCCCCCGCCGTGCAG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVCAFLA*QAPAVQ
Trigger: CTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGGATGGCCTTGGCGTTaGGGGCTGACAGAGCGATGG +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAGWPWR*GLTERW
Trigger: CCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGGCGGCGCTCTGCTCTaGGCTGAGCTGTACACCGGC +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVGGALL*AELYTG
Trigger: GCCGGTGTACAGCTCAGCGCAGAGCAGAGCGCCGCC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGTACCCCCGGCCCTTTaGCACCTGCCGCCGCCGCTG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGVPPAL*HLPPPL
Trigger: CAGCGGCGGCGGCAGGTGGCAAAGGGCCGGGGGTAC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTACCTTTCAGCCGGGGGTaGAGGGCCGCCTCAAAGCCC +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVPFSRG*RAASKP
Trigger: GGGCTTTGAGGCGGCCCTCCACCCCCGGCTGAAAGG...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGGCCTTCCCACCCAGTaGGTCTTGGTGATTGGACCG +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGGLPTQ*VLVIGP
Trigger: CGGTCCAATCACCAAGACCCACTGGGTGGGAAGGCC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
63% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGCCACCAAGTGCTGCTaGTGCCGGATCCTGGCTACC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRATKCC*CRILAT
Trigger: GGTAGCCAGGATCCGGCACCAGCAGCACTTGGTGGC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCCAGGGGGTAGGTTCTaGTGCAGGGCGGGGTGTCCG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGPGGRF*CRAGCP
Trigger: CGGACACCCCGCCCTGCACCAGAACCTACCCCCTGG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTAGGAGGGGGTGCCCTTaGCCATGGGGGTTAAGGCAA +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPRRGCP*PWGLRQ
Trigger: TTGCCTTAACCCCCATGGCCAAGGGCACCCCCTCCT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGCTGGGCCGAGGTGGTaGTGTGGGGCAACTCGCAGG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVAGPRW*CGATRR
Trigger: CCTGCGAGTTGCCCCACACCACCACCTCGGCCCAGC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGCTGGGCCGAGGTGGTaGTGTGGGGCAACTCGCAGG +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAAGPRW*CGATRR
Trigger: CCTGCGAGTTGCCCCACACCACCACCTCGGCCCAGC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTTTGGTTCCAGCCCGCTaGCCCTCCTCACTCTTGTCC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPLVPAR*PSSLLS
Trigger: GGACAAGAGTGAGGAGGGCCAGCGGGCTGGAACCAA...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGAGCTGGGCCACCTTGTaGGCCACCGAGGATGGCAAC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRSWATL*ATEDGN
Trigger: GTTGCCATCCTCGGTGGCCCACAAGGTGGCCCAGCT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCTCGCCCTCGGGGCTaGACAGGCGGCAGGCCCCTA +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPRPRG*TGGRPL
Trigger: TAGGGGCCTGCCGCCTGTCCAGCCCCGAGGGCGAGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGCGCCCGCTCCAGCTTaGCTCCCACCTTGGTCTTTA +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGAPAPA*LPPWSL
Trigger: TAAAGACCAAGGTGGGAGCCAAGCTGGAGCGGGCGC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
63% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGACAGGAAGCAGCGCTaGGCGTGGGTGTGCGCGTGG +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAADRKQR*AWVCAW
Trigger: CCACGCGCACACCCACGCCCAGCGCTGCTTCCTGTC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATGCTACCACTGGGGCTaGCCCCTGCACCTGCACCAG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGCYHWG*PLHLHQ
Trigger: CTGGTGCAGGTGCAGGGGCCAGCCCCAGTGGTAGCA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGTCAGCCAGCTCACTaGGCAGGGCAATCCCATGAA +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGQPAH*AGQSHE
Trigger: TTCATGGGATTGCCCTGCTCAGTGAGCTGGCTGACC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACCGTGCAGGGCTCCGTaGGCTCTCCTCTCTCTCGTG +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAPCRAP*ALLSLV
Trigger: CACGAGAGAGAGGAGAGCTCACGGAGCCCTGCACGG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACGCTCCGATAGCAAATaGGGCGGCGGCGCGAAGTCT +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGRSDSK*GGGAKS
Trigger: AGACTTCGCGCCGCCGCCGCATTTGCTATCGGAGCG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGTGAGGCAGCCTCGATaGGGTCCCGGCTGCAGGACC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRVRQPR*GPGCRT
Trigger: GGTCCTGCAGCCGGGACCGCATCGAGGCTGCCTCAC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGTCGCCGCTCGCCCTTaGCCTCAGCTTTTAGGTGGG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGVAARP*PQLLGG
Trigger: CCCACCTAAAAGCTGAGGGCAAGGGCGAGCGGCGAC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGGGCCTCATGCTCCCTaGTGCGGGCACAGTCGGGTC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRGPHAP*CGHSRV
Trigger: GACCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAATGCCCACGGGTGGCTaGCTCACCTCCCCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVMPTGG*LTSPSP
Trigger: TGGAGACGGGGAGGTGAGGCAGCCACCCGTGGGCAT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGTGTGTGGCCCGATGTTaGTGCTGCTGCTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGCVARC*CCCCCC
Trigger: GCAGCAACAGCAGCAGCAGCAACATCGGGCCACACA...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATGGCGGAGGAGGGGGTaGCCTTGGCCATGGGGGTTA +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVWRRRG*PWPWGL
Trigger: TAACCCCCATGGCCAAGGGCACCCCCTCCTCCGCCA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCAAAGGGGGCTGTGGTaGCCCCTGATCTACAGTCCT +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGQRGLW*PLIYSP
Trigger: AGGACTGTAGATCAGGGGGCACCACAGCCCCCTTTG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATGGTCATGCCTGCGCTaGAGGCGAGCCAGCTCCCGT +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVWSCLR*RRASSR
Trigger: ACGGGAGCTGGCTCGCCTGCAGCGCAGGCATGACCA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCTTCTTCTTGCCTGGTaGACCCGGGGGCCGCCGCCC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGLLLAW*TRGPPP
Trigger: GGGCGGCGGCCCCCGGGTGCACCAGGCAAGAAGAAG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATCGCTGGGCGTGGGTGTaGGCGTGGGGGCTGCTACCC +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHRWAWV*AWGLLP
Trigger: GGGTAGCAGCCCCCACGCGCACACCCACGCCCAGCG...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGCTGGCCCCTGCACCTaGACCAGCCACCCCAGCCCT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWAGPCT*TSHPSP
Trigger: AGGGCTGGGGTGGCTGGTGCAGGTGCAGGGGCCAGC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCAGGACCCGATGGGATaGGCAGGGGTGGCTCGGGGC +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWQDPMG*AGVARG
Trigger: GCCCCGAGCCACCCCTGCCCATCCCATCGGGTCCTG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGCTGAGGGGCGGGGGTaGCCCGGTAGGCAGGCCAGA +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSAEGRG*PGRQAR
Trigger: TCTGGCCTGCCTACCGGGCCACCCCCGCCCCTCAGC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGGGGAAAGAGCCCGCTaGGCCTGTGCTGAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWGERAR*ACAEGR
Trigger: CCGCCCCTCAGCACAGGCCCAGCGGGCTCTTTCCCC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
62% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCAGAAGGCACAAAGGTaGGCCCGCTGGCCTTTAGGT +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGQKAQR*ARWPLG
Trigger: ACCTAAAGGCCAGCGGGCCCACCTTTGTGCCTTCTG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCATGGTCGGTGGCCATaGCCGCATCCAGGTGCCGGT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGHGRWP*PHPGAG
Trigger: ACCGGCACCTGGATGCGGCCATGGCCACCGACCATG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTACATGGTCGGTGGCCATaGCCGCATCCAGGTGCCGGT +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVHGRWP*PHPGAG
Trigger: ACCGGCACCTGGATGCGGCCATGGCCACCGACCATG...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACTCCCCGTCTCCATGTaGGGCCTCATGCTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLPVSM*GLMLPA
Trigger: AGCAGGGAGCATGAGGCCCCACATGGAGACGGGGAG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCATCCAGGTCTAGCGCATaGCTGGCACGTGGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKASRSSA*LARGPP
Trigger: TGGAGGACCACGTGCCAGCCATGCGCTAGACCTGGA...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGTGCGGGGCAGCCAGTaGGGATGGGCAGGATGGGGG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDVRGSQ*GWAGWG
Trigger: CCCCCATCCTGCCCATCCCCACTGGCTGCCCCGCAC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGCCCGGGCCCCATACATaGGGGGCCACAGGGAGGCCT +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLPGPHT*GATGRP
Trigger: AGGCCTCCCTGTGGCCCCCCATGTATGGGGCCCGGG...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCCGGGCCCCATACATaGGGGGCCACAGGGAGGCCT +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPGPHT*GATGRP
Trigger: AGGCCTCCCTGTGGCCCCCCATGTATGGGGCCCGGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGAGGAGGGGGTGCCCTTaGCCATGGGGGTTAAGGCAA +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRRRGCP*PWGLRQ
Trigger: TTGCCTTAACCCCCATGGCCAAGGGCACCCCCTCCT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGGCGCTGGGCCGAGGTaGTGGTGTGGGGCAACTCGC +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWGAGPR*WCGATR
Trigger: GCGAGTTGCCCCACACCACCACCTCGGCCCAGCGCC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTAAGTGCAGGGGGCGCTaGGCCGAGGTGGTGGTGTGG +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGKCRGR*AEVVVW
Trigger: CCACACCACCACCTCGGCCCAGCGCCCCCTGCACTT...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGAGCGCTTTGGGTGGGTaGCTATGGTTGGGAGTCCCC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRSALGG*LWLGVP
Trigger: GGGGACTCCCAACCATAGCCACCCACCCAAAGCGCT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGTCACTCTTCTGCCGCTaGGTCTCCAGGTCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRSLFCR*VSRSAS
Trigger: GCTGGCTGACCTGGAGACCCAGCGGCAGAAGAGTGA...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGTGTTTGCGCTTTCTTaGCCTGCCAGGCCCCCGCCG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVVFALS*PARPPP
Trigger: CGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACAC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCGCCCGCTCCAGCTTaGCTCCCACCTTGGTCTTTA +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAAPAPA*LPPWSL
Trigger: TAAAGACCAAGGTGGGAGCCAAGCTGGAGCGGGCGC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGGACAGGCTGGGTGTaGGGGCTTCGCTGGGCGGGT +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGTGWV*GLRWAG
Trigger: ACCCGCCCAGCGAAGCCCCCACACCCAGCCTGTCCC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
62% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGGGACAGGCTGGGTGTaGGGGCTTCGCTGGGCGGGT +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDGTGWV*GLRWAG
Trigger: ACCCGCCCAGCGAAGCCCCCACACCCAGCCTGTCCC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGCCCTAAGCAGCTTGTaGGCTCCTCCGGGAAGGCCT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTALSSL*APPGRP
Trigger: AGGCCTTCCCGGAGGAGCCCACAAGCTGCTTAGGGC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGAGGTCGCCCCAGCTTaGGTCCGAAGTCCTTGTCGC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTEVAPA*VRSPCR
Trigger: GCGACAAGGACTTCGGACCCAAGCTGGGGCGACCTC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGCCGCTTCCCCAGCTTaGTCTCCTCTGGGTGGTAGA +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRAASPA*SPLGGR
Trigger: TCTACCACCCAGAGGAGACCAAGCTGGGGAAGCGGC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 72 bp TTCTGGCCCAGACAGGGAGCTGGACCAGCTGCACCATaGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCTGT +
Preference number: 4 (lower is better)
Translates to: FWPRQGAGPAAP*EALQLLGEGSC
Trigger: ACAGCTGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGCCAGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGTGTGCCGACGCTGCTaGGCCCAGGCTGCTGGTGAG +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWVCRRC*AQAAGE
Trigger: CTCACCAGCAGCCTGGGCTCAGCAGCGTCGGCACAC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGGACGCAGCTGGCTTTaGGGCTGCCCAGGCCCACGA +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDGRSWL*GCPGPR
Trigger: TCGTGGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATCCAGGGCAGCTGCTTaGAGGGTGGATCCGGGCAAA +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTSRAAA*RVDPGK
Trigger: TTTGCCCGGATCCACCCTTCAAGCAGCTGCCCTGGA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGAGGGTCTGTCAGGCTaGTGTCAGGCAGGTCTCCTA +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKREGLSG*CQAGLL
Trigger: TAGGAGACCTGCCTGACATCAGCCTGACAGACCCTC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTAATCCCATGAATCCCTaGGCTATGCGGCAGAGGAGC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPNPMNP*AMRQRS
Trigger: GCTCCTCTGCCGCATAGCTCAGGGATTCATGGGATT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGACCACGGAGGAAGGTaGGGGTCCCAGCACTGCCAC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRDHGGR*GSQHCH
Trigger: GTGGCAGTGCTGGGACCCTCACCTTCCTCCGTGGTC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTGACCACGGAGGAAGGTaGGGGTCCCAGCACTGCCAC +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGDHGGR*GSQHCH
Trigger: GTGGCAGTGCTGGGACCCTCACCTTCCTCCGTGGTC...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCTGTACACTGGATCTTaGAGTCCGGAGGCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRLYTGS*SPEAAA
Trigger: GGCTGCTGCCTCCGGACTTCAAGATCCAGTGTACAG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGGCCTCCTTGCGCTTaGACTTGGATTTGCTACCAC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGPPCA*TWICYH
Trigger: GTGGTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCCGGGGTGCAGGGCCTaGCTCCTTGCAGGGCCCCTC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAPGCRA*LLAGPL
Trigger: GAGGGGCCCTGCAAGGAGGCAGGCCCTGCACCCCGG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGAGGCTCCACGGGGCCTaGCACCTCCTTGGCACAGCG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGRLHGA*HLLGTA
Trigger: CGCTGTGCCAAGGAGGTGGCAGGCCCCGTGGAGCCT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCACGGGAGACTTTGTCCTaGAGAGGGCAGAGCCCATCT +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKARETLS*RGQSPS
Trigger: AGATGGGCTCTGCCCTCTGCAGGACAAAGTCTCCCG...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGATGGCCGCATCCAGGTaGCGGTCCTTTCCATCACCT +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRMAASR*RSFPSP
Trigger: AGGTGATGGAAAGGACCGGCACCTGGATGCGGCCAT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGGAGACTCCATAGGGTaGACCATGGTCGGTGGCCAT +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAGDSIG*TMVGGH
Trigger: ATGGCCACCGACCATGGTGCACCCTATGGAGTCTCC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGGAGCCACCAAGTGCTaGTGGTGCCGGATCCTGGCT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGGATKC*WCRILA
Trigger: AGCCAGGATCCGGCACCAGCAGCACTTGGTGGCTCC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGGAAACTTGGCTTCCTaGTGGACGCAGCTGGCTTTG +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGGNLAS*WTQLAL
Trigger: CAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
61% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACCTCATGCTCCCTGCTaGGGGCACAGTCGGGTCTTT +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGPHAPC*GHSRVF
Trigger: AAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAGG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGGGCCTCATGCTCCCTaGTGCGGGCACAGTCGGGTC +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLGPHAP*CGHSRV
Trigger: GACCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGCCTGGCCAAGGCCACTaGGATGCCCACGGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLPGQGH*DAHGWL
Trigger: CAGCCACCCGTGGGCATCGCAGTGGCCTTGGCCAGG...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGCCGACCGTGTCCTTCTaGCTGGCCAAGGCCACTGCG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRPTVSF*LAKATA
Trigger: CGCAGTGGCCTTGGCCAGGCAGAAGGACACGGTCGG...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGGGGCGGCCCTGCCCTaGCGCCCACTGTTGGTATTG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDGAALP*RPLLVL
Trigger: CAATACCAACAGTGGGCGGCAGGGCAGGGCCGCCCC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGGTCTCCAGGGCAGCTaGTTGAAGGGTGGATCCGGG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVGLQGS*LKGGSG
Trigger: CCCGGATCCACCCTTCAAGCAGCTGCCCTGGAGACC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGAGGAGGGACTGCGGGTaGGGGGCAGCCAGTGGGGAT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWRRDCG*GAASGD
Trigger: ATCCCCACTGGCTGCCCCGCACCCGCAGTCCCTCCT...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGACCAACTGCGTGGCTaGATCTTGGGGGAGGGGGAA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGDQLRG*ILGEGE
Trigger: TTCCCCCTCCCCCAAGATGCAGCCACGCAGTTGGTC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGCCAGTGTGGCCAGGTaGTGCAGGTTGAAGGCCAGC +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGASVAR*CRLKAS
Trigger: GCTGGCCTTCAACCTGCAGCACCTGGCCACACTGGC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGCTCTGCTAGCTGCATaGGCATCTCCACTTCCTGTG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPALLAA*ASPLPV
Trigger: CACAGGAAGTGGAGATGCGCATGCAGCTAGCAGAGC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGGCCACAGCTCTTCTTaGACCGCACCTTCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGGHSSS*TAPSPR
Trigger: CCTCGGAGAAGGTGCGGTGCAAGAAGAGCTGTGGCC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTATTTGTGCATCTCCCTaGCACTGTCCCCATCGGGGT +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPICASP*HCPHRG
Trigger: ACCCCGATGGGGACAGTGGCAGGGAGATGCACAAAT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGGCTCTCTGGGAGCTaGCTCTGTCCCCAGGAGTGC +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGRLSGS*LCPQEC
Trigger: GCACTCCTGGGGACAGAGGCAGCTCCCAGAGAGCCT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCTTCTTCTTGCCTGGTaGACCCGGGGGCCGCCGCCC +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSLLLAW*TRGPPP
Trigger: GGGCGGCGGCCCCCGGGTGCACCAGGCAAGAAGAAG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGGCGGCGCTCTGCTCTaGGCTGAGCTGTACACCGGC +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWGGALL*AELYTG
Trigger: GCCGGTGTACAGCTCAGCGCAGAGCAGAGCGCCGCC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGATGGTGCAGGACCGTaGCAGGGCGGCGCTCTGCTC +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLDGAGP*QGGALL
Trigger: GAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTGGTCCTCCGGCAGCTaGTGGACACCAACAGGGCTG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGWSSGS*WTPTGL
Trigger: CAGCCCTGTTGGTGTCCAGCAGCTGCCGGAGGACCA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTGCCTCCTGCACAGCTaGCCAGGGAGGCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGCLLHS*PGRPCP
Trigger: TGGGCAAGGCCTCCCTGGCCAGCTGTGCAGGAGGCA...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGGGAAAGAGCCCGCTaGGCCTGTGCTGAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGERAR*ACAEGR
Trigger: CCGCCCCTCAGCACAGGCCCAGCGGGCTCTTTCCCC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCTTTCAGCCGGGGGTaGAGGGCCGCCTCAAAGCCC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPFSRG*RAASKP
Trigger: GGGCTTTGAGGCGGCCCTCCACCCCCGGCTGAAAGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGTGGGTCTTGGTGATTaGACCGGGCACAGTCCTGTG +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRVGLGD*TGHSPV
Trigger: CACAGGACTGTGCCCGGTCCAATCACCAAGACCCAC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCTCCCCGTCTCCATGTaGGGCCTCATGCTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGLPVSM*GLMLPA
Trigger: AGCAGGGAGCATGAGGCCCCACATGGAGACGGGGAG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGAAGTGCAGGGGGCGCTaGGCCGAGGTGGTGGTGTGG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGKCRGR*AEVVVW
Trigger: CCACACCACCACCTCGGCCCAGCGCCCCCTGCACTT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGGTCTGGTTCCAGCGTaGTCAGGTTGGTTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGGLVPA*SGWFQP
Trigger: GGGCTGGAACCAACCTGACCACGCTGGAACCAGACC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGATCCAGGCCAGCTGTaGGGTTCAATCCTGGAGTCA +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPDPGQL*GSILES
Trigger: TGACTCCAGGATTGAACCCCACAGCTGGCCTGGATC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGATCCAGGCCAGCTGTaGGGTTCAATCCTGGAGTCA +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGDPGQL*GSILES
Trigger: TGACTCCAGGATTGAACCCCACAGCTGGCCTGGATC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
61% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCTCTTCTAAGTTCCTaGGGCTGCATGGGGGTGGCT +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAALLSS*GCMGVA
Trigger: AGCCACCCCCATGCAGCCCCAGGAACTTAGAAGAGC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATGGCAAGGTCCTGGGTaGCATCCCTGGCCCTTGAGA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGWQGPG*HPWPLR
Trigger: TCTCAAGGGCCAGGGATGCCACCCAGGACCTTGCCA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACTCTCCTCTCTCTCGTaGTCATGCCTGCGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLSSLS*SCLRCR
Trigger: CCTGCAGCGCAGGCATGACCACGAGAGAGAGGAGAG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACCTCGCCCTCGGGGCTaGACAGGCGGCAGGCCCCTA +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGPRPRG*TGGRPL
Trigger: TAGGGGCCTGCCGCCTGTCCAGCCCCGAGGGCGAGG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGCGCCCGCTCCAGCTTaGCTCCCACCTTGGTCTTTA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGAPAPA*LPPWSL
Trigger: TAAAGACCAAGGTGGGAGCCAAGCTGGAGCGGGCGC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGGCCTTCTTCTTGCCTaGTGCACCCGGGGGCCGCCG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSGLLLA*CTRGPP
Trigger: CGGCGGCCCCCGGGTGCACCAGGCAAGAAGAAGGCC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATGCTCTTTCCCAGGATaGCCTTGGCGTTGCGGGCTG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGCSFPG*PWRCGL
Trigger: CAGCCCGCAACGCCAAGGCCATCCTGGGAAAGAGCA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGCTTCGCTGGGCGGGTaGCCCTCATTGGCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTASLGG*PSLAAF
Trigger: AAAAGCAGCCAATGAGGGCCACCCGCCCAGCGAAGC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGGTCTGAGGCCCCCGTaGGGGACTTGGCACCTGAGG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLGLRPP*GTWHLR
Trigger: CCTCAGGTGCCAAGTCCCCCACGGGGGCCTCAGACC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGCCCTAAGCAGCTTGTaGGCTCCTCCGGGAAGGCCT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGALSSL*APPGRP
Trigger: AGGCCTTCCCGGAGGAGCCCACAAGCTGCTTAGGGC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCATGCCTCGTCTCTGCGTaGGGTTTCCTGACCACTTCC +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKACLVSA*GFLTTS
Trigger: GGAAGTGGTCAGGAAACCCCACGCAGAGACGAGGCA...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 72 bp ATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCTGTaGCCCTGGAGGATAAGGAAGGGGCCGAGAGCTGGT +
Preference number: 4 (lower is better)
Translates to: IGSPAALGGRQL*PWRIRKGPRAG
Trigger: ACCAGCTCTCGGCCCCTTCCTTATCCTCCAGGGCAACAGCTGCCTTCCCCCAAGAGCTGCAGGGCTTCCAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGTTGCTGTTTCCATGGTaGTCCAAGTGGCTCACGGGT +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGLLFPW*SKWLTG
Trigger: ACCCGTGAGCCACTTGGATCACCATGGAAACAGCAA...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGACGCAGCTGGCTTTaGGGCTGCCCAGGCCCACGA +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGRSWL*GCPGPR
Trigger: TCGTGGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACCTCCTCGCACGCCCGTaGCCTCTCCTCTTCGCTCTC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDLLARP*PLLFAL
Trigger: GAGAGCGAAGAGGAGAGGTCACGGGCGTGCGAGGAG...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATCCAGGGCAGCTGCTTaGAGGGTGGATCCGGGCAAA +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAASRAAA*RVDPGK
Trigger: TTTGCCCGGATCCACCCTTCAAGCAGCTGCCCTGGA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAAGCAGGGCAATCCCATaGATCCCTGAGCTATGCGGC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTSRAIP*IPELCG
Trigger: GCCGCATAGCTCAGGGATTCATGGGATTGCCCTGCT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAAGCAGGGCAATCCCATaGATCCCTGAGCTATGCGGC +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGSRAIP*IPELCG
Trigger: GCCGCATAGCTCAGGGATTCATGGGATTGCCCTGCT...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCGTGCAGGGCTCCGTaGGCTCTCCTCTCTCTCGTG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPCRAP*ALLSLV
Trigger: CACGAGAGAGAGGAGAGCTCACGGAGCCCTGCACGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGCAGCCCCTTGCTCTTaGCCTTTGGCTTCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVAAPCS*PLASAG
Trigger: CCCAGCTGAAGCCAAAGGTCAAGAGCAAGGGGCTGC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGACCACGGAGGAAGGTaGGGGTCCCAGCACTGCCAC +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLDHGGR*GSQHCH
Trigger: GTGGCAGTGCTGGGACCCTCACCTTCCTCCGTGGTC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTGCGGGTGGCTCTCTTaGGGCGCTCACTGGCAAGTT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGCGWLS*GAHWQV
Trigger: AACTTGCCAGTGAGCGCCTCAAGAGAGCCACCCGCA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTACCTGGCCCTGCTTGCTaGCAGCCTCTCTCTTCACCT +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVPGPAC*QPLSSP
Trigger: AGGTGAAGAGAGAGGCTGTCAGCAAGCAGGGCCAGG...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACCTGGCCCTGCTTGCTaGCAGCCTCTCTCTTCACCT +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAPGPAC*QPLSSP
Trigger: AGGTGAAGAGAGAGGCTGTCAGCAAGCAGGGCCAGG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACTGTACACTGGATCTTaGAGTCCGGAGGCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLYTGS*SPEAAA
Trigger: GGCTGCTGCCTCCGGACTTCAAGATCCAGTGTACAG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGCTGTGGGGGCAGGTTaGGCAGGTAGAAGTTATCTT +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPAVGAG*AGRSYL
Trigger: AAGATAACTTCTACCTGCGCAACCTGCCCCCACAGC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTACCATCTGGGCCTGCATaGAGCTGCAGGCAGGGGAAA +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVPSGPA*SCRQGK
Trigger: TTTCCCCTGCCTGCAGCTGCATGCAGGCCCAGATGG...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGTCGCCGCTCGCCCTTaGCCTCAGCTTTTAGGTGGG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRVAARP*PQLLGG
Trigger: CCCACCTAAAAGCTGAGGGCAAGGGCGAGCGGCGAC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAAGGTGGGGGCGGCCCTaGCCTGCCGCCCACTGTTGG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIRWGRP*PAAHCW
Trigger: CCAACAGTGGGCGGCAGGGCAGGGCCGCCCCCACCT...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAAGGTGGGGGCGGCCCTaGCCTGCCGCCCACTGTTGG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPRWGRP*PAAHCW
Trigger: CCAACAGTGGGCGGCAGGGCAGGGCCGCCCCCACCT...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTCCACAAGGAGGGACTaGGGGTGCGGGGCAGCCAGT +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDSTRRD*GCGAAS
Trigger: ACTGGCTGCCCCGCACCCGCAGTCCCTCCTTGTGGA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGGGGTAGGTTCTGGTaGAGGGCGGGGTGTCCGAGA +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGGRFW*RAGCPR
Trigger: TCTCGGACACCCCGCCCTGCACCAGAACCTACCCCC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
60% GC, longest homopolymer 9 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACTGCTGCTGCTGCAGTaGATAGAGCTCTTGCTGCCG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGLLLLQ*IELLLP
Trigger: CGGCAGCAAGAGCTCTATGCACTGCAGCAGCAGCAG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATGTGTGGCCCGATGTTaGTGCTGCTGCTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGCVARC*CCCCCC
Trigger: GCAGCAACAGCAGCAGCAGCAACATCGGGCCACACA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATGGAGGTCAGAGGAGTaGACGTCTGAAGGGAGGGAG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTWRSEE*TSEGRE
Trigger: CTCCCTCCCTTCAGACGTGCACTCCTCTGACCTCCA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATCAGCAGCTGGGGCCTaGAGTGAAGTGACTGGGCTG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVSAAGA*SEVTGL
Trigger: CAGCCCAGTCACTTCACTGCAGGCCCCAGCTGCTGA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTGCGCTTTCTTGGCCTaGCAGGCCCCCGCCGTGCAG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSCAFLA*QAPAVQ
Trigger: CTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTTGGGCTTGGAATTTGTaGATCTCCCTGCCACTGTCC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPWAWNL*ISLPLS
Trigger: GGACAGTGGCAGGGAGATGCACAAATTCCAAGCCCA...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGCTCACTGGCAAGTTTaGTGCCCTCCTCTCGGCAGG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVAHWQV*CPPLGR
Trigger: CCTGCCGAGAGGAGGGCAGCAAACTTGCCAGTGAGC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAACGGGCAGTCCGTCCTaGAGGTCTTCCTTGTGGATG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTTGSPS*RSSLWM
Trigger: CATCCACAAGGAAGACCTGCAGGACGGACTGCCCGT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATCAAGAACCGCCTCCTaGAGCAGCTGTTCCAGCGAG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGSRTAS*SSCSSE
Trigger: CTCGCTGGAACAGCTGCTGCAGGAGGCGGTTCTTGA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAGTACCCCCGGCCCTTTaGCACCTGCCGCCGCCGCTG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIVPPAL*HLPPPL
Trigger: CAGCGGCGGCGGCAGGTGGCAAAGGGCCGGGGGTAC...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACCTCCCGGCCTTTTCTaGTTCAGCCCGTTCAGCCTT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTPPGLF*FSPFSL
Trigger: AAGGCTGAACGGGCTGAAGCAGAAAAGGCCGGGAGG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCGGGTGAGACAGGTCTaGAGCAGCAGGGCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWRVRQV*SSRAGS
Trigger: GGACCCTGCCCTGCTGCTGCAGACCTGTCTCACCCG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCGGGTGAGACAGGTCTaGAGCAGCAGGGCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGRVRQV*SSRAGS
Trigger: GGACCCTGCCCTGCTGCTGCAGACCTGTCTCACCCG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACGCTGGGCGTGGGTGTaGGCGTGGGGGCTGCTACCC +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIRWAWV*AWGLLP
Trigger: GGGTAGCAGCCCCCACGCGCACACCCACGCCCAGCG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGGGGAAAGAGCCCGCTaGGCCTGTGCTGAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGGERAR*ACAEGR
Trigger: CCGCCCCTCAGCACAGGCCCAGCGGGCTCTTTCCCC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCATGGTCGGTGGCCATaGCCGCATCCAGGTGCCGGT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWHGRWP*PHPGAG
Trigger: ACCGGCACCTGGATGCGGCCATGGCCACCGACCATG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGTGGGTCTTGGTGATTaGACCGGGCACAGTCCTGTG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTVGLGD*TGHSPV
Trigger: CACAGGACTGTGCCCGGTCCAATCACCAAGACCCAC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAAAGTGCAGCAGGCCTaGGTGGCCTTCCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGKVQQA*VAFPPS
Trigger: ACTGGGTGGGAAGGCCACCCAGGCCTGCTGCACTTT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGCTGGTGCCGGATCCTaGCTACCTTCTGTCCCACTG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVAGAGS*LPSVPL
Trigger: CAGTGGGACAGAAGGTAGCCAGGATCCGGCACCAGC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGCCACCAAGTGCTGCTaGTGCCGGATCCTGGCTACC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRATKCC*CRILAT
Trigger: GGTAGCCAGGATCCGGCACCAGCAGCACTTGGTGGC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGAGTGGGCAGCTCCTaGGACAGGAGGGCTGCCTGC +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGVGSS*DRRAAC
Trigger: GCAGGCAGCCCTCCTGTCCCAGGAGCTGCCCACTCC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACGCATGGCTGGCACGTaGTCCTCCAGCACCTTTGAA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGRMAGT*SSSTFE
Trigger: TTCAAAGGTGCTGGAGGACCACGTGCCAGCCATGCG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATCCAGGTCTAGCGCATaGCTGGCACGTGGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVSRSSA*LARGPP
Trigger: TGGAGGACCACGTGCCAGCCATGCGCTAGACCTGGA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGTGCGGGGCAGCCAGTaGGGATGGGCAGGATGGGGG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGVRGSQ*GWAGWG
Trigger: CCCCCATCCTGCCCATCCCCACTGGCTGCCCCGCAC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATTTGGGGTCTTCTCCTaGGCAGCTTCCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTFGVFS*AASSSS
Trigger: GGAGCTGGAGGAAGCTGCCCAGGAGAAGACCCCAAA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCAACTGGCTTGTGGGTaGACTTTGGGGTCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPQLACG*TLGSSP
Trigger: AGGAGAAGACCCCAAAGTCCACCCACAAGCCAGTTG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAAGGAGGGGGTGCCCTTaGCCATGGGGGTTAAGGCAA +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAARRGCP*PWGLRQ
Trigger: TTGCCTTAACCCCCATGGCCAAGGGCACCCCCTCCT...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTTGGTTCCAGCCCGCTaGCCCTCCTCACTCTTGTCC +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGLVPAR*PSSLLS
Trigger: GGACAAGAGTGAGGAGGGCCAGCGGGCTGGAACCAA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCCTGGGTGGCATCCCTaGCCCTTGAGAGCAGCCCAG +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWPGWHP*PLRAAQ
Trigger: CTGGGCTGCTCTCAAGGGCCAGGGATGCCACCCAGG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACTTGTCCAGGGCAGCTaGGCTCCCTGCTTCCTGTTC +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAALVQGS*APCFLF
Trigger: GAACAGGAAGCAGGGAGCCCAGCTGCCCTGGACAAG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGCGCTTTGGGTGGGTaGCTATGGTTGGGAGTCCCC +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGSALGG*LWLGVP
Trigger: GGGGACTCCCAACCATAGCCACCCACCCAAAGCGCT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATGGCAGCGCTTTGGGTaGGTGGCTATGGTTGGGAGT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTWQRFG*VAMVGS
Trigger: ACTCCCAACCATAGCCACCCACCCAAAGCGCTGCCA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATCACTCTTCTGCCGCTaGGTCTCCAGGTCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVSLFCR*VSRSAS
Trigger: GCTGGCTGACCTGGAGACCCAGCGGCAGAAGAGTGA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGAGCTGGGCCACCTTGTaGGCCACCGAGGATGGCAAC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRSWATL*ATEDGN
Trigger: GTTGCCATCCTCGGTGGCCCACAAGGTGGCCCAGCT...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGCTGGATGCGCCCACCTaGGGCAGCCTCTTTGCGCTG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLLDAPT*GSLFAL
Trigger: CAGCGCAAAGAGGCTGCCCCAGGTGGGCGCATCCAG...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCTGGATGCGCCCACCTaGGGCAGCCTCTTTGCGCTG +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWLDAPT*GSLFAL
Trigger: CAGCGCAAAGAGGCTGCCCCAGGTGGGCGCATCCAG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCACCTCGCCCTCGGGGCTaGACAGGCGGCAGGCCCCTA +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPPRPRG*TGGRPL
Trigger: TAGGGGCCTGCCGCCTGTCCAGCCCCGAGGGCGAGG...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGGACACCAACAGGGCTaGCGAGGGCTCTGTACACTG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGGHQQG*RGLCTL
Trigger: CAGTGTACAGAGCCCTCGCCAGCCCTGTTGGTGTCC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGGACACCAACAGGGCTaGCGAGGGCTCTGTACACTG +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAGHQQG*RGLCTL
Trigger: CAGTGTACAGAGCCCTCGCCAGCCCTGTTGGTGTCC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGCTTCGCTGGGCGGGTaGCCCTCATTGGCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGASLGG*PSLAAF
Trigger: AAAAGCAGCCAATGAGGGCCACCCGCCCAGCGAAGC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGTCTGAGGCCCCCGTaGGGGACTTGGCACCTGAGG +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGLRPP*GTWHLR
Trigger: CCTCAGGTGCCAAGTCCCCCACGGGGGCCTCAGACC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTGCTACCACTGGGGCTaGCCCCTGCACCTGCACCAG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDCYHWG*PLHLHQ
Trigger: CTGGTGCAGGTGCAGGGGCCAGCCCCAGTGGTAGCA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTGGATTTGCTACCACTaGGGCTGGCCCCTGCACCTG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGWICYH*GWPLHL
Trigger: CAGGTGCAGGGGCCAGCCCCAGTGGTAGCAAATCCA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATGGATTTGCTACCACTaGGGCTGGCCCCTGCACCTG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVWICYH*GWPLHL
Trigger: CAGGTGCAGGGGCCAGCCCCAGTGGTAGCAAATCCA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGTGTGCCGACGCTGCTaGGCCCAGGCTGCTGGTGAG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGVCRRC*AQAAGE
Trigger: CTCACCAGCAGCCTGGGCTCAGCAGCGTCGGCACAC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGTTGCTGTTTCCATGGTaGTCCAAGTGGCTCACGGGT +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRLLFPW*SKWLTG
Trigger: ACCCGTGAGCCACTTGGATCACCATGGAAACAGCAA...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTACCTCGGGGCCTGAACTaGGATACTCCAGGCCTTTCA +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVPRGLN*DTPGLS
Trigger: TGAAAGGCCTGGAGTATCTCAGTTCAGGCCCCGAGG...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACCGGGCACAGTCCTGTaGAGTGGGCAACTCAAAGTA +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGPGTVL*SGQLKV
Trigger: TACTTTGAGTTGCCCACTTCACAGGACTGTGCCCGG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAAGAGGAGTGCACGTCTaGAGGGAGGGAGAGATCCAG +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAARGVHV*REGEIQ
Trigger: CTGGATCTCTCCCTCCCTTCAGACGTGCACTCCTCT...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGAGGGTCTGTCAGGCTaGTGTCAGGCAGGTCTCCTA +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGEGLSG*CQAGLL
Trigger: TAGGAGACCTGCCTGACATCAGCCTGACAGACCCTC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGGTCAGCCAGCTCACTaGGCAGGGCAATCCCATGAA +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAGQPAH*AGQSHE
Trigger: TTCATGGGATTGCCCTGCTCAGTGAGCTGGCTGACC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAAAGTCCGGGTGGGACTaGAAAGGGTGTCTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVKSGWD*KGCLCW
Trigger: CCAGCAGAGACACCCTTTTCAGTCCCACCCGGACTT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCCTGGCCCTGCTTGCTaGCAGCCTCTCTCTTCACCT +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGPGPAC*QPLSSP
Trigger: AGGTGAAGAGAGAGGCTGTCAGCAAGCAGGGCCAGG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGGGGTTGCAGGGTCCTaGCACTGCCCGCATACAGCA +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLGVAGS*HCPHTA
Trigger: TGCTGTATGCGGGCAGTGTCAGGACCCTGCAACCCC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGGTCTGAGCCACTGCTaGCCAGCTCAGCAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSGLSHC*PAQQGA
Trigger: AGCCCCCTGCTGAGCTGGTCAGCAGTGGCTCAGACC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGTCTGAGCCACTGCTaGCCAGCTCAGCAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGLSHC*PAQQGA
Trigger: AGCCCCCTGCTGAGCTGGTCAGCAGTGGCTCAGACC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCCATCTGGGCCTGCATaGAGCTGCAGGCAGGGGAAA +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGPSGPA*SCRQGK
Trigger: TTTCCCCTGCCTGCAGCTGCATGCAGGCCCAGATGG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGTCCTTTCCATCACCTaGCACGGCACAGGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRVLSIT*HGTGLC
Trigger: GCAGAGGCCTGTGCCGTGGCAGGTGATGGAAAGGAC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACCACTTTGTCTAAAGTaGAGCAGGCCTGGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGPLCLK*SRPGWP
Trigger: AGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGGAGCCACCAAGTGCTaGTGGTGCCGGATCCTGGCT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWGATKC*WCRILA
Trigger: AGCCAGGATCCGGCACCAGCAGCACTTGGTGGCTCC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGAGCCACCAAGTGCTaGTGGTGCCGGATCCTGGCT +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGATKC*WCRILA
Trigger: AGCCAGGATCCGGCACCAGCAGCACTTGGTGGCTCC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGGAAACTTGGCTTCCTaGTGGACGCAGCTGGCTTTG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTGNLAS*WTQLAL
Trigger: CAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGGGCGGCCCTGCCCTaGCGCCCACTGTTGGTATTG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGAALP*RPLLVL
Trigger: CAATACCAACAGTGGGCGGCAGGGCAGGGCCGCCCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTAGGAGGGACTGCGGGTaGGGGGCAGCCAGTGGGGAT +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLARRDCG*GAASGD
Trigger: ATCCCCACTGGCTGCCCCGCACCCGCAGTCCCTCCT...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGACCAACTGCGTGGCTaGATCTTGGGGGAGGGGGAA +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRDQLRG*ILGEGE
Trigger: TTCCCCCTCCCCCAAGATGCAGCCACGCAGTTGGTC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACTGCTGCTGCTGCAGTaGATAGAGCTCTTGCTGCCG +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAALLLLQ*IELLLP
Trigger: CGGCAGCAAGAGCTCTATGCACTGCAGCAGCAGCAG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGACAGCTCACTCTTCTaGCGCTGGGTCTCCAGGTCA +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVDSSLF*RWVSRS
Trigger: TGACCTGGAGACCCAGCGGCAGAAGAGTGAGCTGTC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTCAGCAGCTGGGGCCTaGAGTGAAGTGACTGGGCTG +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGSAAGA*SEVTGL
Trigger: CAGCCCAGTCACTTCACTGCAGGCCCCAGCTGCTGA...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGGCCACAGCTCTTCTTaGACCGCACCTTCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRGHSSS*TAPSPR
Trigger: CCTCGGAGAAGGTGCGGTGCAAGAAGAGCTGTGGCC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAATAGCTTCTTCTGGATaGGCCCACCTGGGGCAGCCT +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVIASSG*AHLGQP
Trigger: AGGCTGCCCCAGGTGGGCGCATCCAGAAGAAGCTAT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGATGTGCCACAGCCACTaGGGGTTGGGCTTGGAATTT +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRMCHSH*GLGLEF
Trigger: AAATTCCAAGCCCAACCCGCAGTGGCTGTGGCACAT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGAGGCTCTCTGGGAGCTaGCTCTGTCCCCAGGAGTGC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGRLSGS*LCPQEC
Trigger: GCACTCCTGGGGACAGAGGCAGCTCCCAGAGAGCCT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACCTTCGTCAGCTTCCTaGTCTTTCCCAGGATGGCCT +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGPSSAS*SFPGWP
Trigger: AGGCCATCCTGGGAAAGAGCAGGAAGCTGACGAAGG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAACGGGCAGTCCGTCCTaGAGGTCTTCCTTGTGGATG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVTGSPS*RSSLWM
Trigger: CATCCACAAGGAAGACCTGCAGGACGGACTGCCCGT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGACTCCCCGAAAATCTaGGGTACGCAGGAGCTTCAT +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRDSPKI*GTQELH
Trigger: ATGAAGCTCCTGCGTACCCCAGATTTTCGGGGAGTC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGCTGCAGGACCCGATaGGATGGGCAGGGGTGGCTC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGCRTR*DGQGWL
Trigger: GAGCCACCCCTGCCCATCCCATCGGGTCCTGCAGCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTGCCTCCTGCACAGCTaGCCAGGGAGGCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHCLLHS*PGRPCP
Trigger: TGGGCAAGGCCTCCCTGGCCAGCTGTGCAGGAGGCA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCAGAAGGCACAAAGGTaGGCCCGCTGGCCTTTAGGT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGQKAQR*ARWPLG
Trigger: ACCTAAAGGCCAGCGGGCCCACCTTTGTGCCTTCTG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTGGCCTTCCCACCCAGTaGGTCTTGGTGATTGGACCG +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGGLPTQ*VLVIGP
Trigger: CGGTCCAATCACCAAGACCCACTGGGTGGGAAGGCC...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTGCGATGCCCACGGGTaGCTGCCTCACCTCCCCGTC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLACDAHG*LPHLPV
Trigger: GACGGGGAGGTGAGGCAGCCACCCGTGGGCATCGCA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACGCATGGCTGGCACGTaGTCCTCCAGCACCTTTGAA +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAARMAGT*SSSTFE
Trigger: TTCAAAGGTGCTGGAGGACCACGTGCCAGCCATGCG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGTGCGGGGCAGCCAGTaGGGATGGGCAGGATGGGGG +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLVRGSQ*GWAGWG
Trigger: CCCCCATCCTGCCCATCCCCACTGGCTGCCCCGCAC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTGCGTGGCTGCATCTTaGGGGAGGGGGAACACGGAG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDCVAAS*GRGNTE
Trigger: CTCCGTGTTCCCCCTCCCCCAAGATGCAGCCACGCA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGCTCCAGGGCCTGTGTaGCCCGATGTTGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLAPGPV*PDVAAA
Trigger: AGCAGCAGCAACATCGGGCCACACAGGCCCTGGAGC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGCTCCAGGGCCTGTGTaGCCCGATGTTGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWAPGPV*PDVAAA
Trigger: AGCAGCAGCAACATCGGGCCACACAGGCCCTGGAGC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGAAGGCAACTGGCTTGTaGGTGGACTTTGGGGTCTTC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRKATGL*VDFGVF
Trigger: GAAGACCCCAAAGTCCACCCACAAGCCAGTTGCCTT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCTTGGAGCCAGGCCCTaGGCTGCCAGTAGGGCAGAT +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGLGARP*AASRAD
Trigger: ATCTGCCCTACTGGCAGCCCAGGGCCTGGCTCCAAG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCCAGCGTGGTCAGGTTaGTTCCAGCCCGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSPAWSG*FQPAGP
Trigger: AGGGCCAGCGGGCTGGAACCAACCTGACCACGCTGG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTATAGTTTTGGGGTCTTaGAGGTCAGAGGAGTGCACG +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPIVLGS*RSEECT
Trigger: CGTGCACTCCTCTGACCTCCAAGACCCCAAAACTAT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGATAGTTTTGGGGTCTTaGAGGTCAGAGGAGTGCACG +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGIVLGS*RSEECT
Trigger: CGTGCACTCCTCTGACCTCCAAGACCCCAAAACTAT...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAAGATTGGCAAGGTCCTaGGTGGCATCCCTGGCCCTT +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAARLARS*VASLAL
Trigger: AAGGGCCAGGGATGCCACCCAGGACCTTGCCAATCT...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGTCTTCTGCCTTCCCTaGTGGGAGTCCTCCCTCAAC +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAVFCLP*WESSLN
Trigger: GTTGAGGGAGGACTCCCACCAGGGAAGGCAGAAGAC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAGTCTTCTGCCTTCCCTaGTGGGAGTCCTCCCTCAAC +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVVFCLP*WESSLN
Trigger: GTTGAGGGAGGACTCCCACCAGGGAAGGCAGAAGAC...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGCTTGTCCAGGGCAGCTaGGCTCCCTGCTTCCTGTTC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRLVQGS*APCFLF
Trigger: GAACAGGAAGCAGGGAGCCCAGCTGCCCTGGACAAG...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATGGCAGCGCTTTGGGTaGGTGGCTATGGTTGGGAGT +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAWQRFG*VAMVGS
Trigger: ACTCCCAACCATAGCCACCCACCCAAAGCGCTGCCA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGCAAGGCATCCAAGCCTaGCAGCGCTTTGGGTGGGTG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRQGIQA*QRFGWV
Trigger: CACCCACCCAAAGCGCTGCCAGGCTTGGATGCCTTG...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTCCTCATCTTCTTGCATaGACAGCTCACTCTTCTGCC +
Preference number: 4 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPPHLLA*TAHSSA
Trigger: GGCAGAAGAGTGAGCTGTCCATGCAAGAAGATGAGG...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGTGTTTGCGCTTTCTTaGCCTGCCAGGCCCCCGCCG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSVFALS*PARPPP
Trigger: CGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACAC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACTTCCGCCTCAGGACTaGCTGCAACATGGCGCTCTT +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAALPPQD*LQHGAL
Trigger: AAGAGCGCCATGTTGCAGCCAGTCCTGAGGCGGAAG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTGCTCTTTCCCAGGATaGCCTTGGCGTTGCGGGCTG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRCSFPG*PWRCGL
Trigger: CAGCCCGCAACGCCAAGGCCATCCTGGGAAAGAGCA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGTACCGACTGGACTGTaGCTGGACATCAAGAACCGC +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGVPTGL*LDIKNR
Trigger: GCGGTTCTTGATGTCCAGCCACAGTCCAGTCGGTAC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACCCCCCGTGGGGGACTTaGCACCTGAGGTTAGGAGGT +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDPPWGT*HLRLGG
Trigger: ACCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGG...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
59% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCCCCCGTGGGGGACTTaGCACCTGAGGTTAGGAGGT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWPPWGT*HLRLGG
Trigger: ACCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACTGCGGCCTAGGAAGTaGTCTGAGGCCCCCGTGGGG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGLRPRK*SEAPVG
Trigger: CCCCACGGGGGCCTCAGACCACTTCCTAGGCCGCAG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGAGGTCACACCCTCATaGTCCAGCTTAACCAGAAAC +
Preference number: 4 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGEVTPS*SSLTRN
Trigger: GTTTCTGGTTAAGCTGGACCATGAGGGTGTGACCTC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACATCGGAGTAGGAGCTaGGGCAGTCACTATCACAGG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGHRSRS*GSHYHR
Trigger: CCTGTGATAGTGACTGCCCCAGCTCCTACTCCGATG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACATCGGAGTAGGAGCTaGGGCAGTCACTATCACAGG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTHRSRS*GSHYHR
Trigger: CCTGTGATAGTGACTGCCCCAGCTCCTACTCCGATG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGACAGGAAGCAGCGCTaGGCGTGGGTGTGCGCGTGG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGDRKQR*AWVCAW
Trigger: CCACGCGCACACCCACGCCCAGCGCTGCTTCCTGTC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGACAGGAAGCAGCGCTaGGCGTGGGTGTGCGCGTGG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLADRKQR*AWVCAW
Trigger: CCACGCGCACACCCACGCCCAGCGCTGCTTCCTGTC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATGCCTCGTCTCTGCGTaGGGTTTCCTGACCACTTCC +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAACLVSA*GFLTTS
Trigger: GGAAGTGGTCAGGAAACCCCACGCAGAGACGAGGCA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGTGTGCCGACGCTGCTaGGCCCAGGCTGCTGGTGAG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPVCRRC*AQAAGE
Trigger: CTCACCAGCAGCCTGGGCTCAGCAGCGTCGGCACAC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCCGGGCACAGTCCTGTaGAGTGGGCAACTCAAAGTA +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGPGTVL*SGQLKV
Trigger: TACTTTGAGTTGCCCACTTCACAGGACTGTGCCCGG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCTCCTCGCACGCCCGTaGCCTCTCCTCTTCGCTCTC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLALLARP*PLLFAL
Trigger: GAGAGCGAAGAGGAGAGGTCACGGGCGTGCGAGGAG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACACTTCAGCGAGTGTGTaGGGGGTGGTGTGGGGTGTG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDTSASV*GVVWGV
Trigger: CACACCCCACACCACCCCTCACACACTCGCTGAAGT...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGACTTCAGCGAGTGTGTaGGGGGTGGTGTGGGGTGTG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGTSASV*GVVWGV
Trigger: CACACCCCACACCACCCCTCACACACTCGCTGAAGT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGACTTCAGCGAGTGTGTaGGGGGTGGTGTGGGGTGTG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLTSASV*GVVWGV
Trigger: CACACCCCACACCACCCCTCACACACTCGCTGAAGT...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGAAGTCCGGGTGGGACTaGAAAGGGTGTCTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRKSGWD*KGCLCW
Trigger: CCAGCAGAGACACCCTTTTCAGTCCCACCCGGACTT...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGTGCGGGTGGCTCTCTTaGGGCGCTCACTGGCAAGTT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWCGWLS*GAHWQV
Trigger: AACTTGCCAGTGAGCGCCTCAAGAGAGCCACCCGCA...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCTGTACACTGGATCTTaGAGTCCGGAGGCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGLYTGS*SPEAAA
Trigger: GGCTGCTGCCTCCGGACTTCAAGATCCAGTGTACAG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGCTTTCCGCTTGGTCTaGGCCACTGCTGACCAGCTC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGAFRLV*ATADQL
Trigger: GAGCTGGTCAGCAGTGGCTCAGACCAAGCGGAAAGC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACAACTCGCCAGGCTGCTaGAGGAGTCAGCTCGGAAGC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDNSPGC*RSQLGS
Trigger: GCTTCCGAGCTGACTCCTTCAGCAGCCTGGCGAGTT...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGGTGGTAGAACCATTTaGCCTTCACCACCATGTTGC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRGGRTI*PSPPCC
Trigger: GCAACATGGTGGTGAAGGTCAAATGGTTCTACCACC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCGCTCCGATAGCAAATaGGGCGGCGGCGCGAAGTCT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSRSDSK*GGGAKS
Trigger: AGACTTCGCGCCGCCGCCGCATTTGCTATCGGAGCG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGTGAGGCAGCCTCGATaGGGTCCCGGCTGCAGGACC +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLVRQPR*GPGCRT
Trigger: GGTCCTGCAGCCGGGACCGCATCGAGGCTGCCTCAC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCCTCATGCTCCCTGCTaGGGGCACAGTCGGGTCTTT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWPHAPC*GHSRVF
Trigger: AAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAGG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAATGCCCACGGGTGGCTaGCTCACCTCCCCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGMPTGG*LTSPSP
Trigger: TGGAGACGGGGAGGTGAGGCAGCCACCCGTGGGCAT...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTATGCCCACGGGTGGCTaGCTCACCTCCCCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAMPTGG*LTSPSP
Trigger: TGGAGACGGGGAGGTGAGGCAGCCACCCGTGGGCAT...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGCCCGATGTTGCTGCTaGTGCTGTTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDARCCC*CCCCCC
Trigger: GCAGCAGCAGCAACAGCAGCAGCAGCAACATCGGGC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGTGGCCCGATGTTGCTaGTGCTGCTGTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDVARCC*CCCCCC
Trigger: GCAGCAGCAACAGCAGCAGCAGCAACATCGGGCCAC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGAGTGTGGCCAGGTGCTaGAGGTTGAAGGCCAGCACA +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRSVARC*RLKAST
Trigger: TGTGCTGGCCTTCAACCTGCAGCACCTGGCCACACT...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATTGCGTTGCAGGATTTaGATTCTGGGGGTGAGCCTG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLRCRI*ILGVSL
Trigger: CAGGCTCACCCCCAGAATGCAAATCCTGCAACGCAA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTGCAGCTCTGCTAGCTaGATGCGCATCTCCACTTCC +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGCSSAS*MRISTS
Trigger: GGAAGTGGAGATGCGCATGCAGCTAGCAGAGCTGCA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTATAGCTTCTTCTGGATaGGCCCACCTGGGGCAGCCT +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGIASSG*AHLGQP
Trigger: AGGCTGCCCCAGGTGGGCGCATCCAGAAGAAGCTAT...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACCTTCGTCAGCTTCCTaGTCTTTCCCAGGATGGCCT +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAPSSAS*SFPGWP
Trigger: AGGCCATCCTGGGAAAGAGCAGGAAGCTGACGAAGG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCAAGAACCGCCTCCTaGAGCAGCTGTTCCAGCGAG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRSRTAS*SSCSSE
Trigger: CTCGCTGGAACAGCTGCTGCAGGAGGCGGTTCTTGA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGCAGGGGGCTGCCTCTaGGGCCTAGGAAGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGAGGCL*GLGSGL
Trigger: CAGACCACTTCCTAGGCCGCAGAGGCAGCCCCCTGC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCAGCTCAGCAGGGGGCTaGCTCTGCGGCCTAGGAAGT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSSSAGG*LCGLGS
Trigger: ACTTCCTAGGCCGCAGAGGCAGCCCCCTGCTGAGCT...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAAATGAGGGCTGGGTGTaGGTAACTGGGGTTGCTAAG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGNEGWV*VTGVAK
Trigger: CTTAGCAACCCCAGTTACGCACACCCAGCCCTCATT...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAAATGAGGGCTGGGTGTaGGTAACTGGGGTTGCTAAG +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTNEGWV*VTGVAK
Trigger: CTTAGCAACCCCAGTTACGCACACCCAGCCCTCATT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCGGGTGAGACAGGTCTaGAGCAGCAGGGCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLARVRQV*SSRAGS
Trigger: GGACCCTGCCCTGCTGCTGCAGACCTGTCTCACCCG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCACCTTTCAGCCGGGGGTaGAGGGCCGCCTCAAAGCCC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPPFSRG*RAASKP
Trigger: GGGCTTTGAGGCGGCCCTCCACCCCCGGCTGAAAGG...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGCCTTCCCACCCAGTaGGTCTTGGTGATTGGACCG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGLPTQ*VLVIGP
Trigger: CGGTCCAATCACCAAGACCCACTGGGTGGGAAGGCC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGCTGGTGCCGGATCCTaGCTACCTTCTGTCCCACTG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGAGAGS*LPSVPL
Trigger: CAGTGGGACAGAAGGTAGCCAGGATCCGGCACCAGC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGGAGTGGGCAGCTCCTaGGACAGGAGGGCTGCCTGC +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLGVGSS*DRRAAC
Trigger: GCAGGCAGCCCTCCTGTCCCAGGAGCTGCCCACTCC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACAACTGGCTTGTGGGTaGACTTTGGGGTCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTQLACG*TLGSSP
Trigger: AGGAGAAGACCCCAAAGTCCACCCACAAGCCAGTTG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGCTGGGCCGAGGTGGTaGTGTGGGGCAACTCGCAGG +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLAGPRW*CGATRR
Trigger: CCTGCGAGTTGCCCCACACCACCACCTCGGCCCAGC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCAAGTGCAGGGGGCGCTaGGCCGAGGTGGTGGTGTGG +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLKCRGR*AEVVVW
Trigger: CCACACCACCACCTCGGCCCAGCGCCCCCTGCACTT...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGGTCTGGTTCCAGCGTaGTCAGGTTGGTTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWGLVPA*SGWFQP
Trigger: GGGCTGGAACCAACCTGACCACGCTGGAACCAGACC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCAAGGCATCCAAGCCTaGCAGCGCTTTGGGTGGGTG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGQGIQA*QRFGWV
Trigger: CACCCACCCAAAGCGCTGCCAGGCTTGGATGCCTTG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGGCACGGAGGCTGCTaGGGTCTGAGGGTCTGTCAG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGHGGC*GLRVCQ
Trigger: CTGACAGACCCTCAGACCCCAGCAGCCTCCGTGCCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGGGCACGGAGGCTGCTaGGGTCTGAGGGTCTGTCAG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGGHGGC*GLRVCQ
Trigger: CTGACAGACCCTCAGACCCCAGCAGCCTCCGTGCCC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCTCTCCTCTCTCTCGTaGTCATGCCTGCGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGLSSLS*SCLRCR
Trigger: CCTGCAGCGCAGGCATGACCACGAGAGAGAGGAGAG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTTCCCAGGATGGCCTTaGCGTTGCGGGCTGACAGAG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDFPGWP*RCGLTE
Trigger: CTCTGTCAGCCCGCAACGCCAAGGCCATCCTGGGAA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGCTTCGCTGGGCGGGTaGCCCTCATTGGCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLASLGG*PSLAAF
Trigger: AAAAGCAGCCAATGAGGGCCACCCGCCCAGCGAAGC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGAGGTCGCCCCAGCTTaGGTCCGAAGTCCTTGTCGC +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSEVAPA*VRSPCR
Trigger: GCGACAAGGACTTCGGACCCAAGCTGGGGCGACCTC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTGGATTTGCTACCACTaGGGCTGGCCCCTGCACCTG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLWICYH*GWPLHL
Trigger: CAGGTGCAGGGGCCAGCCCCAGTGGTAGCAAATCCA...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAAAAGCTCTTTGGCTTTaGAGAAGCTCAGGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAKALWL*RSSGPP
Trigger: AGGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTT...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 72 bp CCAGAACCTCTGGCTCAGCCTCATGGCTATCCACACTaGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAA +
Preference number: 4 (lower is better)
Translates to: PEPLAQPHGYPH*RLSRGGGTPGK
Trigger: TTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGGATAGCCATGAGGCTGAGCCAGAGGTTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGCCTCGGGGCCTGAACTaGGATACTCCAGGCCTTTCA +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLPRGLN*DTPGLS
Trigger: TGAAAGGCCTGGAGTATCTCAGTTCAGGCCCCGAGG...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCCGGGCACAGTCCTGTaGAGTGGGCAACTCAAAGTA +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGPGTVL*SGQLKV
Trigger: TACTTTGAGTTGCCCACTTCACAGGACTGTGCCCGG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTCCAGGGCAGCTGCTTaGAGGGTGGATCCGGGCAAA +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHSRAAA*RVDPGK
Trigger: TTTGCCCGGATCCACCCTTCAAGCAGCTGCCCTGGA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAGGCATCCCTGGCCCTTaGGAGCAGCCCAGGCTCTTC +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIGIPGP*EQPRLF
Trigger: GAAGAGCCTGGGCTGCTCTCAAGGGCCAGGGATGCC...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCCGTGCAGGGCTCCGTaGGCTCTCCTCTCTCTCGTG +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLPCRAP*ALLSLV
Trigger: CACGAGAGAGAGGAGAGCTCACGGAGCCCTGCACGG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGAAGTCCGGGTGGGACTaGAAAGGGTGTCTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGKSGWD*KGCLCW
Trigger: CCAGCAGAGACACCCTTTTCAGTCCCACCCGGACTT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTGCGGGTGGCTCTCTTaGGGCGCTCACTGGCAAGTT +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHCGWLS*GAHWQV
Trigger: AACTTGCCAGTGAGCGCCTCAAGAGAGCCACCCGCA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGGGTTGCAGGGTCCTaGCACTGCCCGCATACAGCA +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGVAGS*HCPHTA
Trigger: TGCTGTATGCGGGCAGTGTCAGGACCCTGCAACCCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACCCGCTCCCTGCCCTCTaGTCCCTTGCTAACTTTCTC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDPLPAL*SLANFL
Trigger: GAGAAAGTTAGCAAGGGAGCAGAGGGCAGGGAGCGG...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGTCGCCGCTCGCCCTTaGCCTCAGCTTTTAGGTGGG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGVAARP*PQLLGG
Trigger: CCCACCTAAAAGCTGAGGGCAAGGGCGAGCGGCGAC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCCTCATGCTCCCTGCTaGGGGCACAGTCGGGTCTTT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSPHAPC*GHSRVF
Trigger: AAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAGG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCCGACCGTGTCCTTCTaGCTGGCCAAGGCCACTGCG +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLPTVSF*LAKATA
Trigger: CGCAGTGGCCTTGGCCAGGCAGAAGGACACGGTCGG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACCGACCGTGTCCTTCTaGCTGGCCAAGGCCACTGCG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIPTVSF*LAKATA
Trigger: CGCAGTGGCCTTGGCCAGGCAGAAGGACACGGTCGG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGTCTCCAGGGCAGCTaGTTGAAGGGTGGATCCGGG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGLQGS*LKGGSG
Trigger: CCCGGATCCACCCTTCAAGCAGCTGCCCTGGAGACC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCTGCTGCTGCTGCAGTaGATAGAGCTCTTGCTGCCG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGLLLLQ*IELLLP
Trigger: CGGCAGCAAGAGCTCTATGCACTGCAGCAGCAGCAG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGTGTGTGGCCCGATGTTaGTGCTGCTGCTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGCVARC*CCCCCC
Trigger: GCAGCAACAGCAGCAGCAGCAACATCGGGCCACACA...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGTGGAGGTCAGAGGAGTaGACGTCTGAAGGGAGGGAG +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWWRSEE*TSEGRE
Trigger: CTCCCTCCCTTCAGACGTGCACTCCTCTGACCTCCA...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGACAGCTCACTCTTCTaGCGCTGGGTCTCCAGGTCA +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLDSSLF*RWVSRS
Trigger: TGACCTGGAGACCCAGCGGCAGAAGAGTGAGCTGTC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGAGTGTGGCCAGGTGCTaGAGGTTGAAGGCCAGCACA +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWSVARC*RLKAST
Trigger: TGTGCTGGCCTTCAACCTGCAGCACCTGGCCACACT...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGCCAGTGTGGCCAGGTaGTGCAGGTTGAAGGCCAGC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAASVAR*CRLKAS
Trigger: GCTGGCCTTCAACCTGCAGCACCTGGCCACACTGGC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCAGGTGTCCTTGCGTTaGAGGATTTGCATTCTGGGG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGQVSLR*RICILG
Trigger: CCCCAGAATGCAAATCCTGCAACGCAAGGACACCTG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTACAGGTGTCCTTGCGTTaGAGGATTTGCATTCTGGGG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVQVSLR*RICILG
Trigger: CCCCAGAATGCAAATCCTGCAACGCAAGGACACCTG...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACAGCCTTGGCTTTCTTaGTGTCACTTCTGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTQPWLS*CHFWQA
Trigger: AGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGGCCACAGCTCTTCTTaGACCGCACCTTCTCCGAGG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSGHSSS*TAPSPR
Trigger: CCTCGGAGAAGGTGCGGTGCAAGAAGAGCTGTGGCC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATGGGCTTGGAATTTGTaGATCTCCCTGCCACTGTCC +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAWAWNL*ISLPLS
Trigger: GGACAGTGGCAGGGAGATGCACAAATTCCAAGCCCA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAATGTGCCACAGCCACTaGGGGTTGGGCTTGGAATTT +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAMCHSH*GLGLEF
Trigger: AAATTCCAAGCCCAACCCGCAGTGGCTGTGGCACAT...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGCTCACTGGCAAGTTTaGTGCCCTCCTCTCGGCAGG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSAHWQV*CPPLGR
Trigger: CCTGCCGAGAGGAGGGCAGCAAACTTGCCAGTGAGC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGATGGCCTTGGCGTTaGGGGCTGACAGAGCGATGG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGWPWR*GLTERW
Trigger: CCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGACGGGCAGTCCGTCCTaGAGGTCTTCCTTGTGGATG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGTGSPS*RSSLWM
Trigger: CATCCACAAGGAAGACCTGCAGGACGGACTGCCCGT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATGGTCCTCCGGCAGCTaGTGGACACCAACAGGGCTG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGWSSGS*WTPTGL
Trigger: CAGCCCTGTTGGTGTCCAGCAGCTGCCGGAGGACCA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGCAGGGGGCTGCCTCTaGGGCCTAGGAAGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPAGGCL*GLGSGL
Trigger: CAGACCACTTCCTAGGCCGCAGAGGCAGCCCCCTGC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATACGCAGGAGCTTCATaGGAGTGGGAGAACCAGATC +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAYAGAS*EWENQI
Trigger: GATCTGGTTCTCCCACTCCCATGAAGCTCCTGCGTA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTATACGCAGGAGCTTCATaGGAGTGGGAGAACCAGATC +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVYAGAS*EWENQI
Trigger: GATCTGGTTCTCCCACTCCCATGAAGCTCCTGCGTA...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCACAGGCCTCTGCTACTTaGAAAGAGCGGCTCTTGTCA +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAQASAT*KERLLS
Trigger: TGACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTG...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGTGGGTCTTGGTGATTaGACCGGGCACAGTCCTGTG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLVGLGD*TGHSPV
Trigger: CACAGGACTGTGCCCGGTCCAATCACCAAGACCCAC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCAGCAGGTTCTTCATaGCCGAGACCTCATCTGGCG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRSAGSS*PRPHLA
Trigger: CGCCAGATGAGGTCTCGGCCATGAAGAACCTGCTGA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCTCCCCGTCTCCATGTaGGGCCTCATGCTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLALPVSM*GLMLPA
Trigger: AGCAGGGAGCATGAGGCCCCACATGGAGACGGGGAG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTCCAGGTCTAGCGCATaGCTGGCACGTGGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSSRSSA*LARGPP
Trigger: TGGAGGACCACGTGCCAGCCATGCGCTAGACCTGGA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGGCCACAGGGAGGCCTaGTCCATAACTTCAGCGAGT +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLGHREA*SITSAS
Trigger: ACTCGCTGAAGTTATGGACCAGGCCTCCCTGTGGCC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGGCCACAGGGAGGCCTaGTCCATAACTTCAGCGAGT +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDGHREA*SITSAS
Trigger: ACTCGCTGAAGTTATGGACCAGGCCTCCCTGTGGCC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGCCACAGGGAGGCCTaGTCCATAACTTCAGCGAGT +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGHREA*SITSAS
Trigger: ACTCGCTGAAGTTATGGACCAGGCCTCCCTGTGGCC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGCTCCAGGGCCTGTGTaGCCCGATGTTGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGAPGPV*PDVAAA
Trigger: AGCAGCAGCAACATCGGGCCACACAGGCCCTGGAGC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAAAGGCAACTGGCTTGTaGGTGGACTTTGGGGTCTTC +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVKATGL*VDFGVF
Trigger: GAAGACCCCAAAGTCCACCCACAAGCCAGTTGCCTT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCTTGGAGCCAGGCCCTaGGCTGCCAGTAGGGCAGAT +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLALGARP*AASRAD
Trigger: ATCTGCCCTACTGGCAGCCCAGGGCCTGGCTCCAAG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTTGGTTCCAGCCCGCTaGCCCTCCTCACTCTTGTCC +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSLVPAR*PSSLLS
Trigger: GGACAAGAGTGAGGAGGGCCAGCGGGCTGGAACCAA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCTTGTCCAGGGCAGCTaGGCTCCCTGCTTCCTGTTC +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSLVQGS*APCFLF
Trigger: GAACAGGAAGCAGGGAGCCCAGCTGCCCTGGACAAG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTGTCCAGCCGGTCGATaGCAGCCTTCAGGGGACATA +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDCPAGR*QPSGDI
Trigger: TATGTCCCCTGAAGGCTGCCATCGACCGGCTGGACA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATCTCTCCTCTCTCTCGTaGTCATGCCTGCGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHLSSLS*SCLRCR
Trigger: CCTGCAGCGCAGGCATGACCACGAGAGAGAGGAGAG...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGTGTTTGCGCTTTCTTaGCCTGCCAGGCCCCCGCCG +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLVFALS*PARPPP
Trigger: CGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACAC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGTTGCACGAACAGCCTTaGCTTTCTTGCTGTCACTTC +
Preference number: 4 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRLHEQP*LSCCHF
Trigger: GAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAA...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACTGGATGCGCCCACCTaGGGCAGCCTCTTTGCGCTG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCILDAPT*GSLFAL
Trigger: CAGCGCAAAGAGGCTGCCCCAGGTGGGCGCATCCAG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAACTGCGGGTTGGGCTTaGAATTTGTGCATCTCCCTG +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVTAGWA*NLCISL
Trigger: CAGGGAGATGCACAAATTCCAAGCCCAACCCGCAGT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAACAGCCACTGCGGGTTaGGCTTGGAATTTGTGCATC +
Preference number: 4 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVTATAG*AWNLCI
Trigger: GATGCACAAATTCCAAGCCCAACCCGCAGTGGCTGT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGCTTGGCTCCCACCTTaGTCTTTACTGTTCGTCTCT +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGAWLPP*SLLFVS
Trigger: AGAGACGAACAGTAAAGACCAAGGTGGGAGCCAAGC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGCTTCCGCCTCAGGACTaGCTGCAACATGGCGCTCTT +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLLPPQD*LQHGAL
Trigger: AAGAGCGCCATGTTGCAGCCAGTCCTGAGGCGGAAG...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTTCCCAGGATGGCCTTaGCGTTGCGGGCTGACAGAG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSFPGWP*RCGLTE
Trigger: CTCTGTCAGCCCGCAACGCCAAGGCCATCCTGGGAA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGAGGTCACACCCTCATaGTCCAGCTTAACCAGAAAC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTEVTPS*SSLTRN
Trigger: GTTTCTGGTTAAGCTGGACCATGAGGGTGTGACCTC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATCCGAGAAAGCTCTTTaGCTTTGGAGAAGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGSEKAL*LWRSSG
Trigger: CCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGTGCCTCGTCTCTGCGTaGGGTTTCCTGACCACTTCC +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWCLVSA*GFLTTS
Trigger: GGAAGTGGTCAGGAAACCCCACGCAGAGACGAGGCA...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCTTCGTGGCAGGACTaGTACAGTGCGTTCTTCCCG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRSSWQD*YSAFFP
Trigger: CGGGAAGAACGCACTGTACCAGTCCTGCCACGAAGA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACAATCCCATGAATCCCTaGGCTATGCGGCAGAGGAGC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDNPMNP*AMRQRS
Trigger: GCTCCTCTGCCGCATAGCTCAGGGATTCATGGGATT...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATCTTGGTGCTTCCGTTaGGCTGGAAGAGGTTCTGTA +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAASWCFR*AGRGSV
Trigger: TACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTAACTCGCCAGGCTGCTaGAGGAGTCAGCTCGGAAGC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLANSPGC*RSQLGS
Trigger: GCTTCCGAGCTGACTCCTTCAGCAGCCTGGCGAGTT...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGGGCCTCCTTGCGCTTaGACTTGGATTTGCTACCAC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDGPPCA*TWICYH
Trigger: GTGGTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGGTGGTAGAACCATTTaGCCTTCACCACCATGTTGC +
Preference number: 4 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAGGRTI*PSPPCC
Trigger: GCAACATGGTGGTGAAGGTCAAATGGTTCTACCACC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCGGGAGACTTTGTCCTaGAGAGGGCAGAGCCCATCT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSRETLS*RGQSPS
Trigger: AGATGGGCTCTGCCCTCTGCAGGACAAAGTCTCCCG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCACTTTGTCTAAAGTaGAGCAGGCCTGGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPLCLK*SRPGWP
Trigger: AGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGGTCTCCAGGGCAGCTaGTTGAAGGGTGGATCCGGG +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLGLQGS*LKGGSG
Trigger: CCCGGATCCACCCTTCAAGCAGCTGCCCTGGAGACC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCAAGATGACCAACTaGGTGGCTGCATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGKMTN*VAASWG
Trigger: CCCCCAAGATGCAGCCACGCAGTTGGTCATCTTGCC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGCCCGATGTTGCTGCTaGTGCTGTTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAARCCC*CCCCCC
Trigger: GCAGCAGCAGCAACAGCAGCAGCAGCAACATCGGGC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGTGGCCCGATGTTGCTaGTGCTGCTGTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAVARCC*CCCCCC
Trigger: GCAGCAGCAACAGCAGCAGCAGCAACATCGGGCCAC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTGGAGGTCAGAGGAGTaGACGTCTGAAGGGAGGGAG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSWRSEE*TSEGRE
Trigger: CTCCCTCCCTTCAGACGTGCACTCCTCTGACCTCCA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGACAGCTCACTCTTCTaGCGCTGGGTCTCCAGGTCA +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHDSSLF*RWVSRS
Trigger: TGACCTGGAGACCCAGCGGCAGAAGAGTGAGCTGTC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAACATCCTCATCTTCTTaGATGGACAGCTCACTCTTC +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKATSSSS*MDSSLF
Trigger: GAAGAGTGAGCTGTCCATGCAAGAAGATGAGGATGT...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTGCAGCTCTGCTAGCTaGATGCGCATCTCCACTTCC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDCSSAS*MRISTS
Trigger: GGAAGTGGAGATGCGCATGCAGCTAGCAGAGCTGCA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTATGTGCCACAGCCACTaGGGGTTGGGCTTGGAATTT +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGMCHSH*GLGLEF
Trigger: AAATTCCAAGCCCAACCCGCAGTGGCTGTGGCACAT...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGGCCAGTTTTCACCTTaGCCTTGGCCTTCTTCTTGC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRGQFSP*PWPSSC
Trigger: GCAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGCTCACTGGCAAGTTTaGTGCCCTCCTCTCGGCAGG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGAHWQV*CPPLGR
Trigger: CCTGCCGAGAGGAGGGCAGCAAACTTGCCAGTGAGC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTCAAGAACCGCCTCCTaGAGCAGCTGTTCCAGCGAG +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSSRTAS*SSCSSE
Trigger: CTCGCTGGAACAGCTGCTGCAGGAGGCGGTTCTTGA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATTAGGAGGTCGACTTTaGCAGCTTTGTCTTTGCTGC +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGLGGRL*QLCLCC
Trigger: GCAGCAAAGACAAAGCTGGCAAAGTCGACCTCCTAA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAAGCTCAGCAGGGGGCTaGCTCTGCGGCCTAGGAAGT +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPSSAGG*LCGLGS
Trigger: ACTTCCTAGGCCGCAGAGGCAGCCCCCTGCTGAGCT...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGAATGAGGGCTGGGTGTaGGTAACTGGGGTTGCTAAG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRNEGWV*VTGVAK
Trigger: CTTAGCAACCCCAGTTACGCACACCCAGCCCTCATT...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAAAAGTGCAGCAGGCCTaGGTGGCCTTCCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGKVQQA*VAFPPS
Trigger: ACTGGGTGGGAAGGCCACCCAGGCCTGCTGCACTTT...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTGGGCCCTTAGTGGCTaGAAACTTGGCTTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDWALSG*KLGFLL
Trigger: CAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATGCGTGGCTGCATCTTaGGGGAGGGGGAACACGGAG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCICVAAS*GRGNTE
Trigger: CTCCGTGTTCCCCCTCCCCCAAGATGCAGCCACGCA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCATGCGTGGCTGCATCTTaGGGGAGGGGGAACACGGAG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPCVAAS*GRGNTE
Trigger: CTCCGTGTTCCCCCTCCCCCAAGATGCAGCCACGCA...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCTTGGAGCCAGGCCCTaGGCTGCCAGTAGGGCAGAT +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLLGARP*AASRAD
Trigger: ATCTGCCCTACTGGCAGCCCAGGGCCTGGCTCCAAG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGTCTGGTTCCAGCGTaGTCAGGTTGGTTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGLVPA*SGWFQP
Trigger: GGGCTGGAACCAACCTGACCACGCTGGAACCAGACC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGATCCAGGCCAGCTGTaGGGTTCAATCCTGGAGTCA +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGDPGQL*GSILES
Trigger: TGACTCCAGGATTGAACCCCACAGCTGGCCTGGATC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATGGCAAGGTCCTGGGTaGCATCCCTGGCCCTTGAGA +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGWQGPG*HPWPLR
Trigger: TCTCAAGGGCCAGGGATGCCACCCAGGACCTTGCCA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCAGGAGGGGGTAGATTaGCAAGGTCCTGGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSQEGVD*QGPGWH
Trigger: ATGCCACCCAGGACCTTGCCAATCTACCCCCTCCTG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATCACTCTTCTGCCGCTaGGTCTCCAGGTCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGSLFCR*VSRSAS
Trigger: GCTGGCTGACCTGGAGACCCAGCGGCAGAAGAGTGA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTGTCCAGCCGGTCGATaGCAGCCTTCAGGGGACATA +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHCPAGR*QPSGDI
Trigger: TATGTCCCCTGAAGGCTGCCATCGACCGGCTGGACA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGACTGCGGGTTGGGCTTaGAATTTGTGCATCTCCCTG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRTAGWA*NLCISL
Trigger: CAGGGAGATGCACAAATTCCAAGCCCAACCCGCAGT...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTGCAGGTCTTCCTTGTaGATGGTGCAGGACCGTGCC +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHCRSSL*MVQDRA
Trigger: GGCACGGTCCTGCACCATCCACAAGGAAGACCTGCA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGTACCGACTGGACTGTaGCTGGACATCAAGAACCGC +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLVPTGL*LDIKNR
Trigger: GCGGTTCTTGATGTCCAGCCACAGTCCAGTCGGTAC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGGACACCAACAGGGCTaGCGAGGGCTCTGTACACTG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGGHQQG*RGLCTL
Trigger: CAGTGTACAGAGCCCTCGCCAGCCCTGTTGGTGTCC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAAAGCTCTTTGGCTTTaGAGAAGCTCAGGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGKALWL*RSSGPP
Trigger: AGGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACCTTGCCTCGGACAATaGCCTTGTAGAATAGTTTCC +
Preference number: 4 (lower is better)
Translates to: APCSSKARLLSLHQTGHGPCLGQ*PCRIVS
Trigger: GGAAACTATTCTACAAGGCCATTGTCCGAGGCAAGG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTCTTCGTGGCAGGACTaGTACAGTGCGTTCTTCCCG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLSSWQD*YSAFFP
Trigger: CGGGAAGAACGCACTGTACCAGTCCTGCCACGAAGA...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTCATTCTCATCTTCGTaGCAGGACTGGTACAGTGCG +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGSFSSS*QDWYSA
Trigger: CGCACTGTACCAGTCCTGCCACGAAGATGAGAATGA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCCTTTCGTTCCTCGATaGTGGCCATGGAGGTGTCGT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSPFVPR*WPWRCR
Trigger: ACGACACCTCCATGGCCATCATCGAGGAACGAAAGG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGTCAGCCAGCTCACTaGGCAGGGCAATCCCATGAA +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGQPAH*AGQSHE
Trigger: TTCATGGGATTGCCCTGCTCAGTGAGCTGGCTGACC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCATTTGCATTCTGGGGGTaGGCCTGGGGCCTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPFAFWG*AWGLCL
Trigger: CAGACAGAGGCCCCAGGCTCACCCCCAGAATGCAAA...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATTTGCATTCTGGGGGTaGGCCTGGGGCCTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIFAFWG*AWGLCL
Trigger: CAGACAGAGGCCCCAGGCTCACCCCCAGAATGCAAA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGCTTTCCGCTTGGTCTaGGCCACTGCTGACCAGCTC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPAFRLV*ATADQL
Trigger: GAGCTGGTCAGCAGTGGCTCAGACCAAGCGGAAAGC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCTTGGTGCTTCCGTTaGGCTGGAAGAGGTTCTGTA +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRSWCFR*AGRGSV
Trigger: TACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGCTGTGGGGGCAGGTTaGGCAGGTAGAAGTTATCTT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWAVGAG*AGRSYL
Trigger: AAGATAACTTCTACCTGCGCAACCTGCCCCCACAGC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGTCCTTTCCATCACCTaGCACGGCACAGGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLVLSIT*HGTGLC
Trigger: GCAGAGGCCTGTGCCGTGGCAGGTGATGGAAAGGAC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATCCACTTTGTCTAAAGTaGAGCAGGCCTGGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHPLCLK*SRPGWP
Trigger: AGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGG...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAACCAAGTGCTGCTGGTaGCGGATCCTGGCTACCTTC +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGTKCCW*RILATF
Trigger: GAAGGTAGCCAGGATCCGGCACCAGCAGCACTTGGT...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCGACTAGGGCTTGGTTaGTGTATTTCAGCAGGTTCT +
Preference number: 4 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGRLGLG*CISAGS
Trigger: AGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGCAAGATGACCAACTaGGTGGCTGCATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGKMTN*VAASWG
Trigger: CCCCCAAGATGCAGCCACGCAGTTGGTCATCTTGCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACAAAGGGGGCTGTGGTaGCCCCTGATCTACAGTCCT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGQRGLW*PLIYSP
Trigger: AGGACTGTAGATCAGGGGGCACCACAGCCCCCTTTG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAACATCCTCATCTTCTTaGATGGACAGCTCACTCTTC +
Preference number: 4 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTTSSSS*MDSSLF
Trigger: GAAGAGTGAGCTGTCCATGCAAGAAGATGAGGATGT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATCAGCAGCTGGGGCCTaGAGTGAAGTGACTGGGCTG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCISAAGA*SEVTGL
Trigger: CAGCCCAGTCACTTCACTGCAGGCCCCAGCTGCTGA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGTGAGCTTGAGTGTTTaGGCTTTCTTGGCCTGCCAG +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLVSLSV*AFLACQ
Trigger: CTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCAC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCATTTGTGCATCTCCCTaGCACTGTCCCCATCGGGGT +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSICASP*HCPHRG
Trigger: ACCCCGATGGGGACAGTGGCAGGGAGATGCACAAAT...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGCCAGTTTTCACCTTaGCCTTGGCCTTCTTCTTGC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGQFSP*PWPSSC
Trigger: GCAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCAGCTTTGTCTTTGCTaGCAGATTTCTTCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGQLCLC*QISSQG
Trigger: CCCCTGGGAAGAAATCTGGCAGCAAAGACAAAGCTG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACCTCCCGGCCTTTTCTaGTTCAGCCCGTTCAGCCTT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGPPGLF*FSPFSL
Trigger: AAGGCTGAACGGGCTGAAGCAGAAAAGGCCGGGAGG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGACTCCCCGAAAATCTaGGGTACGCAGGAGCTTCAT +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGDSPKI*GTQELH
Trigger: ATGAAGCTCCTGCGTACCCCAGATTTTCGGGGAGTC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACAGAAGGCACAAAGGTaGGCCCGCTGGCCTTTAGGT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGQKAQR*ARWPLG
Trigger: ACCTAAAGGCCAGCGGGCCCACCTTTGTGCCTTCTG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCAAAGTGCAGCAGGCCTaGGTGGCCTTCCCACCCAGT +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLKVQQA*VAFPPS
Trigger: ACTGGGTGGGAAGGCCACCCAGGCCTGCTGCACTTT...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGCTGGTGCCGGATCCTaGCTACCTTCTGTCCCACTG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPAGAGS*LPSVPL
Trigger: CAGTGGGACAGAAGGTAGCCAGGATCCGGCACCAGC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTCAGCAGGTTCTTCATaGCCGAGACCTCATCTGGCG +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHSAGSS*PRPHLA
Trigger: CGCCAGATGAGGTCTCGGCCATGAAGAACCTGCTGA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTGGGCCCTTAGTGGCTaGAAACTTGGCTTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHWALSG*KLGFLL
Trigger: CAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACGCATGGCTGGCACGTaGTCCTCCAGCACCTTTGAA +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGRMAGT*SSSTFE
Trigger: TTCAAAGGTGCTGGAGGACCACGTGCCAGCCATGCG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGAAGGCAACTGGCTTGTaGGTGGACTTTGGGGTCTTC +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLKATGL*VDFGVF
Trigger: GAAGACCCCAAAGTCCACCCACAAGCCAGTTGCCTT...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATGGCAAGGTCCTGGGTaGCATCCCTGGCCCTTGAGA +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIWQGPG*HPWPLR
Trigger: TCTCAAGGGCCAGGGATGCCACCCAGGACCTTGCCA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCAGGAGGGGGTAGATTaGCAAGGTCCTGGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAQEGVD*QGPGWH
Trigger: ATGCCACCCAGGACCTTGCCAATCTACCCCCTCCTG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCAGCGCTTTGGGTGGGTaGCTATGGTTGGGAGTCCCC +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLSALGG*LWLGVP
Trigger: GGGGACTCCCAACCATAGCCACCCACCCAAAGCGCT...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTGGCAGCGCTTTGGGTaGGTGGCTATGGTTGGGAGT +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAWQRFG*VAMVGS
Trigger: ACTCCCAACCATAGCCACCCACCCAAAGCGCTGCCA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACAAGGCATCCAAGCCTaGCAGCGCTTTGGGTGGGTG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIQGIQA*QRFGWV
Trigger: CACCCACCCAAAGCGCTGCCAGGCTTGGATGCCTTG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCTAGATAGCTTCTTCTaGATGCGCCCACCTGGGGCA +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSLDSFF*MRPPGA
Trigger: TGCCCCAGGTGGGCGCATCCAGAAGAAGCTATCTAG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGACAGCCACTGCGGGTTaGGCTTGGAATTTGTGCATC +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLTATAG*AWNLCI
Trigger: GATGCACAAATTCCAAGCCCAACCCGCAGTGGCTGT...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCATCTCCTTTTTCTTCTTaGCCTTCTGATTGGCTTCCA +
Preference number: 4 (lower is better)
Translates to: RELDQLHHWKPCSSWGKASPFSS*PSDWLP
Trigger: TGGAAGCCAATCAGAAGGCCAAGAAGAAAAAGGAGA...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTTTCACCTTGCCCTTaGCCTTCTTCTTGCCTGGTG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRFSPCP*PSSCLV
Trigger: CACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTTTTCACCTTGCCCTTaGCCTTCTTCTTGCCTGGTG +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGFSPCP*PSSCLV
Trigger: CACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAA...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTAAAGCTCTTTGGCTTTaGAGAAGCTCAGGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGKALWL*RSSGPP
Trigger: AGGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTT...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGCCGCTTCCCCAGCTTaGTCTCCTCTGGGTGGTAGA +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPAASPA*SPLGGR
Trigger: TCTACCACCCAGAGGAGACCAAGCTGGGGAAGCGGC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTCATTCTCATCTTCGTaGCAGGACTGGTACAGTGCG +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGSFSSS*QDWYSA
Trigger: CGCACTGTACCAGTCCTGCCACGAAGATGAGAATGA...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 72 bp GGTGGGAGACAGTCGGAGGTACTAGGGAAATATGGCTaGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGG +
Preference number: 4 (lower is better)
Translates to: GGRQSEVLGKYG*DSNLSRTAVQR
Trigger: CCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATATTTCCCTAGTACCTCCGACTGTCTCCCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCCTTTCGTTCCTCGATaGTGGCCATGGAGGTGTCGT +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAPFVPR*WPWRCR
Trigger: ACGACACCTCCATGGCCATCATCGAGGAACGAAAGG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACACTCCTCGCACGCCCGTaGCCTCTCCTCTTCGCTCTC +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTLLARP*PLLFAL
Trigger: GAGAGCGAAGAGGAGAGGTCACGGGCGTGCGAGGAG...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGAGGGTCTGTCAGGCTaGTGTCAGGCAGGTCTCCTA +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLEGLSG*CQAGLL
Trigger: TAGGAGACCTGCCTGACATCAGCCTGACAGACCCTC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAAGCAGGGCAATCCCATaGATCCCTGAGCTATGCGGC +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCISRAIP*IPELCG
Trigger: GCCGCATAGCTCAGGGATTCATGGGATTGCCCTGCT...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCCGCTCCCTGCCCTCTaGTCCCTTGCTAACTTTCTC +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLPLPAL*SLANFL
Trigger: GAGAAAGTTAGCAAGGGAGCAGAGGGCAGGGAGCGG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCACCGCTCCCTGCCCTCTaGTCCCTTGCTAACTTTCTC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPPLPAL*SLANFL
Trigger: GAGAAAGTTAGCAAGGGAGCAGAGGGCAGGGAGCGG...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAATGGCCGCATCCAGGTaGCGGTCCTTTCCATCACCT +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPMAASR*RSFPSP
Trigger: AGGTGATGGAAAGGACCGGCACCTGGATGCGGCCAT...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAACCAAGTGCTGCTGGTaGCGGATCCTGGCTACCTTC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPTKCCW*RILATF
Trigger: GAAGGTAGCCAGGATCCGGCACCAGCAGCACTTGGT...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCGACTAGGGCTTGGTTaGTGTATTTCAGCAGGTTCT +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGRLGLG*CISAGS
Trigger: AGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGGGGGTAGGTTCTGGTaGAGGGCGGGGTGTCCGAGA +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTGGRFW*RAGCPR
Trigger: TCTCGGACACCCCGCCCTGCACCAGAACCTACCCCC...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACATGGCGGAGGAGGGGGTaGCCTTGGCCATGGGGGTTA +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTWRRRG*PWPWGL
Trigger: TAACCCCCATGGCCAAGGGCACCCCCTCCTCCGCCA...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGCTCTGCTAGCTGCATaGGCATCTCCACTTCCTGTG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAALLAA*ASPLPV
Trigger: CACAGGAAGTGGAGATGCGCATGCAGCTAGCAGAGC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCAGCCTTGGCTTTCTTaGTGTCACTTCTGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWQPWLS*CHFWQA
Trigger: AGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGGCCAGTTTTCACCTTaGCCTTGGCCTTCTTCTTGC +
Preference number: 4 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSGQFSP*PWPSSC
Trigger: GCAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTGCCAGCTTTGTCTTTaGTGCCAGATTTCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: MAWILISRELRCSGRAAGCQLCL*CQISSQ
Trigger: CTGGGAAGAAATCTGGCAGCAAAGACAAAGCTGGCA...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACCTCCCGGCCTTTTCTaGTTCAGCCCGTTCAGCCTT +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIPPGLF*FSPFSL
Trigger: AAGGCTGAACGGGCTGAAGCAGAAAAGGCCGGGAGG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTGTGGGAGATGGTCTaGACGTCATTCTCATCTTCG +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRLWEMV*TSFSSS
Trigger: CGAAGATGAGAATGACGTGCAGACCATCTCCCACAA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATCAGCAGGTTCTTCATaGCCGAGACCTCATCTGGCG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGSAGSS*PRPHLA
Trigger: CGCCAGATGAGGTCTCGGCCATGAAGAACCTGCTGA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTGGGCCCTTAGTGGCTaGAAACTTGGCTTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAWALSG*KLGFLL
Trigger: CAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACATAGTTTTGGGGTCTTaGAGGTCAGAGGAGTGCACG +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDIVLGS*RSEECT
Trigger: CGTGCACTCCTCTGACCTCCAAGACCCCAAAACTAT...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGCTCTTCTAAGTTCCTaGGGCTGCATGGGGGTGGCT +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPALLSS*GCMGVA
Trigger: AGCCACCCCCATGCAGCCCCAGGAACTTAGAAGAGC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAAGATTGGCAAGGTCCTaGGTGGCATCCCTGGCCCTT +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPRLARS*VASLAL
Trigger: AAGGGCCAGGGATGCCACCCAGGACCTTGCCAATCT...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATGTCCAGCCGGTCGATaGCAGCCTTCAGGGGACATA +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCICPAGR*QPSGDI
Trigger: TATGTCCCCTGAAGGCTGCCATCGACCGGCTGGACA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTGCACGAACAGCCTTaGCTTTCTTGCTGTCACTTC +
Preference number: 4 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRLHEQP*LSCCHF
Trigger: GAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCTAGATAGCTTCTTCTaGATGCGCCCACCTGGGGCA +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLALDSFF*MRPPGA
Trigger: TGCCCCAGGTGGGCGCATCCAGAAGAAGCTATCTAG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGCTTGGCTCCCACCTTaGTCTTTACTGTTCGTCTCT +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDAWLPP*SLLFVS
Trigger: AGAGACGAACAGTAAAGACCAAGGTGGGAGCCAAGC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCTTCCGCCTCAGGACTaGCTGCAACATGGCGCTCTT +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLLPPQD*LQHGAL
Trigger: AAGAGCGCCATGTTGCAGCCAGTCCTGAGGCGGAAG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCATGCAGGTCTTCCTTGTaGATGGTGCAGGACCGTGCC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPCRSSL*MVQDRA
Trigger: GGCACGGTCCTGCACCATCCACAAGGAAGACCTGCA...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACGTGCTTCCGTTGAGCTaGAAGAGGTTCTGTAGTACC +
Preference number: 4 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDVLPLS*KRFCST
Trigger: GGTACTACAGAACCTCTTCCAGCTCAACGGAAGCAC...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGTCCGAGAAAGCTCTTTaGCTTTGGAGAAGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGSEKAL*LWRSSG
Trigger: CCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGA...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTCTTCGTGGCAGGACTaGTACAGTGCGTTCTTCCCG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLASSWQD*YSAFFP
Trigger: CGGGAAGAACGCACTGTACCAGTCCTGCCACGAAGA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGTCATTCTCATCTTCGTaGCAGGACTGGTACAGTGCG +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGSFSSS*QDWYSA
Trigger: CGCACTGTACCAGTCCTGCCACGAAGATGAGAATGA...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 72 bp ACCCTTGGTGTTCCTGTGGACCACCAAGAGGGACCCTaGGAGCAACTAGTAAGAAAAACAGAGTCCCTGGGA +
Preference number: 4 (lower is better)
Translates to: TLGVPVDHQEGP*EQLVRKTESLG
Trigger: TCCCAGGGACTCTGTTTTTCTTACTAGTTGCTCCAAGGGTCCCTCTTGGTGGTCCACAGGAACACCAAGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACCTTTCGTTCCTCGATaGTGGCCATGGAGGTGTCGT +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIPFVPR*WPWRCR
Trigger: ACGACACCTCCATGGCCATCATCGAGGAACGAAAGG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAGGGCCTCCTTGCGCTTaGACTTGGATTTGCTACCAC +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIGPPCA*TWICYH
Trigger: GTGGTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCC...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGCTGTGGGGGCAGGTTaGGCAGGTAGAAGTTATCTT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGAVGAG*AGRSYL
Trigger: AAGATAACTTCTACCTGCGCAACCTGCCCCCACAGC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCACCTTCGTCAGCTTCCTaGTCTTTCCCAGGATGGCCT +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPPSSAS*SFPGWP
Trigger: AGGCCATCCTGGGAAAGAGCAGGAAGCTGACGAAGG...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGTTAGGAGGTCGACTTTaGCAGCTTTGTCTTTGCTGC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGLGGRL*QLCLCC
Trigger: GCAGCAAAGACAAAGCTGGCAAAGTCGACCTCCTAA...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGTACCCCCGGCCCTTTaGCACCTGCCGCCGCCGCTG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVVPPAL*HLPPPL
Trigger: CAGCGGCGGCGGCAGGTGGCAAAGGGCCGGGGGTAC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGACTCCCCGAAAATCTaGGGTACGCAGGAGCTTCAT +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLADSPKI*GTQELH
Trigger: ATGAAGCTCCTGCGTACCCCAGATTTTCGGGGAGTC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACAGGCCTCTGCTACTTaGAAAGAGCGGCTCTTGTCA +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGQASAT*KERLLS
Trigger: TGACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACAACTGGCTTGTGGGTaGACTTTGGGGTCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGQLACG*TLGSSP
Trigger: AGGAGAAGACCCCAAAGTCCACCCACAAGCCAGTTG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAACTGCGGGTTGGGCTTaGAATTTGTGCATCTCCCTG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGTAGWA*NLCISL
Trigger: CAGGGAGATGCACAAATTCCAAGCCCAACCCGCAGT...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAGTACCGACTGGACTGTaGCTGGACATCAAGAACCGC +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIVPTGL*LDIKNR
Trigger: GCGGTTCTTGATGTCCAGCCACAGTCCAGTCGGTAC...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGCCCTAAGCAGCTTGTaGGCTCCTCCGGGAAGGCCT +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTALSSL*APPGRP
Trigger: AGGCCTTCCCGGAGGAGCCCACAAGCTGCTTAGGGC...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCCTTGCCTCGGACAATaGCCTTGTAGAATAGTTTCC +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWPCLGQ*PCRIVS
Trigger: GGAAACTATTCTACAAGGCCATTGTCCGAGGCAAGG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCTTGCCTCGGACAATaGCCTTGTAGAATAGTTTCC +
Preference number: 4 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPCLGQ*PCRIVS
Trigger: GGAAACTATTCTACAAGGCCATTGTCCGAGGCAAGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGTGGTAGAACCATTTaGCCTTCACCACCATGTTGC +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGGRTI*PSPPCC
Trigger: GCAACATGGTGGTGAAGGTCAAATGGTTCTACCACC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGACCAACTGCGTGGCTaGATCTTGGGGGAGGGGGAA +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTDQLRG*ILGEGE
Trigger: TTCCCCCTCCCCCAAGATGCAGCCACGCAGTTGGTC...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGTGAGCTTGAGTGTTTaGGCTTTCTTGGCCTGCCAG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPVSLSV*AFLACQ
Trigger: CTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCAC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACAGCCTTGGCTTTCTTaGTGTCACTTCTGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGQPWLS*CHFWQA
Trigger: AGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCTGGGCTTGGAATTTGTaGATCTCCCTGCCACTGTCC +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLWAWNL*ISLPLS
Trigger: GGACAGTGGCAGGGAGATGCACAAATTCCAAGCCCA...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACAGCTTTGTCTTTGCTaGCAGATTTCTTCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGQLCLC*QISSQG
Trigger: CCCCTGGGAAGAAATCTGGCAGCAAAGACAAAGCTG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCAGCTTTGTCTTTGCTaGCAGATTTCTTCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAQLCLC*QISSQG
Trigger: CCCCTGGGAAGAAATCTGGCAGCAAAGACAAAGCTG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCAGGCCTCTGCTACTTaGAAAGAGCGGCTCTTGTCA +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLQASAT*KERLLS
Trigger: TGACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGGGACAGGCTGGGTGTaGGGGCTTCGCTGGGCGGGT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVGTGWV*GLRWAG
Trigger: ACCCGCCCAGCGAAGCCCCCACACCCAGCCTGTCCC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGACATTTGTGGGAGATaGTCTGCACGTCATTCTCAT +
Preference number: 4 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLDICGR*SARHSH
Trigger: ATGAGAATGACGTGCAGACCATCTCCCACAAATGTC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGACATTTGTGGGAGATaGTCTGCACGTCATTCTCAT +
Preference number: 4 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWDICGR*SARHSH
Trigger: ATGAGAATGACGTGCAGACCATCTCCCACAAATGTC...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCTCTTGGTGCTTCCGTTaGGCTGGAAGAGGTTCTGTA +
Preference number: 4 (lower is better)
Translates to: RESIWWGKGVHLSGENVLSWCFR*AGRGSV
Trigger: TACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGA...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAATGGCCGCATCCAGGTaGCGGTCCTTTCCATCACCT +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTMAASR*RSFPSP
Trigger: AGGTGATGGAAAGGACCGGCACCTGGATGCGGCCAT...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGGGGCGGCCCTGCCCTaGCGCCCACTGTTGGTATTG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVGAALP*RPLLVL
Trigger: CAATACCAACAGTGGGCGGCAGGGCAGGGCCGCCCC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTAGGAGGGACTGCGGGTaGGGGGCAGCCAGTGGGGAT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVRRDCG*GAASGD
Trigger: ATCCCCACTGGCTGCCCCGCACCCGCAGTCCCTCCT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGGCAAGATGACCAACTaGGTGGCTGCATCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTGKMTN*VAASWG
Trigger: CCCCCAAGATGCAGCCACGCAGTTGGTCATCTTGCC...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAAGTGTGGCCAGGTGCTaGAGGTTGAAGGCCAGCACA +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTSVARC*RLKAST
Trigger: TGTGCTGGCCTTCAACCTGCAGCACCTGGCCACACT...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTGCGATGCCCACGGGTaGCTGCCTCACCTCCCCGTC +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVCDAHG*LPHLPV
Trigger: GACGGGGAGGTGAGGCAGCCACCCGTGGGCATCGCA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCCAGGGGGTAGGTTCTaGTGCAGGGCGGGGTGTCCG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVPGGRF*CRAGCP
Trigger: CGGACACCCCGCCCTGCACCAGAACCTACCCCCTGG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACATTTGGGGTCTTCTCCTaGGCAGCTTCCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTFGVFS*AASSSS
Trigger: GGAGCTGGAGGAAGCTGCCCAGGAGAAGACCCCAAA...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCACCTCATCTTCTTGCATaGACAGCTCACTCTTCTGCC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPPHLLA*TAHSSA
Trigger: GGCAGAAGAGTGAGCTGTCCATGCAAGAAGATGAGG...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCATTTTCACCTTGCCCTTaGCCTTCTTCTTGCCTGGTG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPFSPCP*PSSCLV
Trigger: CACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAA...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGTGCTTCCGTTGAGCTaGAAGAGGTTCTGTAGTACC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPVLPLS*KRFCST
Trigger: GGTACTACAGAACCTCTTCCAGCTCAACGGAAGCAC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAGAGGTCACACCCTCATaGTCCAGCTTAACCAGAAAC +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIEVTPS*SSLTRN
Trigger: GTTTCTGGTTAAGCTGGACCATGAGGGTGTGACCTC...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCATCCGAGAAAGCTCTTTaGCTTTGGAGAAGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPSEKAL*LWRSSG
Trigger: CCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGA...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCACGACTAGGGCTTGGTTaGTGTATTTCAGCAGGTTCT +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPRLGLG*CISAGS
Trigger: AGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCG...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAATTTGTGCATCTCCCTaGCACTGTCCCCATCGGGGT +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTICASP*HCPHRG
Trigger: ACCCCGATGGGGACAGTGGCAGGGAGATGCACAAAT...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATGCCAGCTTTGTCTTTaGTGCCAGATTTCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCICQLCL*CQISSQ
Trigger: CTGGGAAGAAATCTGGCAGCAAAGACAAAGCTGGCA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGCAGGGGGCTGCCTCTaGGGCCTAGGAAGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVAGGCL*GLGSGL
Trigger: CAGACCACTTCCTAGGCCGCAGAGGCAGCCCCCTGC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATTGTGGGAGATGGTCTaGACGTCATTCTCATCTTCG +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCILWEMV*TSFSSS
Trigger: CGAAGATGAGAATGACGTGCAGACCATCTCCCACAA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCCTGGGTGGCATCCCTaGCCCTTGAGAGCAGCCCAG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVPGWHP*PLRAAQ
Trigger: CTGGGCTGCTCTCAAGGGCCAGGGATGCCACCCAGG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATGTAGAATAGTTTCCTaGCTTTCCCCTTCATGCCTC +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGCRIVS*LSPSCL
Trigger: GAGGCATGAAGGGGAAAGCCAGGAAACTATTCTACA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAACATCCTCATCTTCTTaGATGGACAGCTCACTCTTC +
Preference number: 4 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPTSSSS*MDSSLF
Trigger: GAAGAGTGAGCTGTCCATGCAAGAAGATGAGGATGT...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTGGTCCTCCGGCAGCTaGTGGACACCAACAGGGCTG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVWSSGS*WTPTGL
Trigger: CAGCCCTGTTGGTGTCCAGCAGCTGCCGGAGGACCA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTAGCTCAGCAGGGGGCTaGCTCTGCGGCCTAGGAAGT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVSSAGG*LCGLGS
Trigger: ACTTCCTAGGCCGCAGAGGCAGCCCCCTGCTGAGCT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAACAGCCACTGCGGGTTaGGCTTGGAATTTGTGCATC +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTTATAG*AWNLCI
Trigger: GATGCACAAATTCCAAGCCCAACCCGCAGTGGCTGT...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATCTCCTTTTTCTTCTTaGCCTTCTGATTGGCTTCCA +
Preference number: 4 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGSPFSS*PSDWLP
Trigger: TGGAAGCCAATCAGAAGGCCAAGAAGAAAAAGGAGA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATGTAGAATAGTTTCCTaGCTTTCCCCTTCATGCCTC +
Preference number: 4 (lower is better)
Translates to: VLGVRMCVQEARRDPCCICRIVS*LSPSCL
Trigger: GAGGCATGAAGGGGAAAGCCAGGAAACTATTCTACA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACACCTCATCTTCTTGCATaGACAGCTCACTCTTCTGCC +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTPHLLA*TAHSSA
Trigger: GGCAGAAGAGTGAGCTGTCCATGCAAGAAGATGAGG...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGCTTGGCTCCCACCTTaGTCTTTACTGTTCGTCTCT +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTAWLPP*SLLFVS
Trigger: AGAGACGAACAGTAAAGACCAAGGTGGGAGCCAAGC...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTGCTCTTTCCCAGGATaGCCTTGGCGTTGCGGGCTG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVCSFPG*PWRCGL
Trigger: CAGCCCGCAACGCCAAGGCCATCCTGGGAAAGAGCA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGCCGCTTCCCCAGCTTaGTCTCCTCTGGGTGGTAGA +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVAASPA*SPLGGR
Trigger: TCTACCACCCAGAGGAGACCAAGCTGGGGAAGCGGC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCCTCGGGGCCTGAACTaGGATACTCCAGGCCTTTCA +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVPRGLN*DTPGLS
Trigger: TGAAAGGCCTGGAGTATCTCAGTTCAGGCCCCGAGG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR TCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTAGAGGAGTGCACGTCTaGAGGGAGGGAGAGATCCAG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVRGVHV*REGEIQ
Trigger: CTGGATCTCTCCCTCCCTTCAGACGTGCACTCCTCT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCGGGAGACTTTGTCCTaGAGAGGGCAGAGCCCATCT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVRETLS*RGQSPS
Trigger: AGATGGGCTCTGCCCTCTGCAGGACAAAGTCTCCCG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGGAGACTCCATAGGGTaGACCATGGTCGGTGGCCAT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVGDSIG*TMVGGH
Trigger: ATGGCCACCGACCATGGTGCACCCTATGGAGTCTCC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCAAAGGGGGCTGTGGTaGCCCCTGATCTACAGTCCT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVQRGLW*PLIYSP
Trigger: AGGACTGTAGATCAGGGGGCACCACAGCCCCCTTTG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTTTGGGGTCTTCTCCTaGGCAGCTTCCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVFGVFS*AASSSS
Trigger: GGAGCTGGAGGAAGCTGCCCAGGAGAAGACCCCAAA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGCTCTTCTAAGTTCCTaGGGCTGCATGGGGGTGGCT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVALLSS*GCMGVA
Trigger: AGCCACCCCCATGCAGCCCCAGGAACTTAGAAGAGC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTAGATTGGCAAGGTCCTaGGTGGCATCCCTGGCCCTT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVRLARS*VASLAL
Trigger: AAGGGCCAGGGATGCCACCCAGGACCTTGCCAATCT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCAGGAGGGGGTAGATTaGCAAGGTCCTGGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVQEGVD*QGPGWH
Trigger: ATGCCACCCAGGACCTTGCCAATCTACCCCCTCCTG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGTCTTCTGCCTTCCCTaGTGGGAGTCCTCCCTCAAC +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVVFCLP*WESSLN
Trigger: GTTGAGGGAGGACTCCCACCAGGGAAGGCAGAAGAC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGGAAACTTGGCTTCCTaGTGGACGCAGCTGGCTTTG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVGNLAS*WTQLAL
Trigger: CAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGCTCTGCTAGCTGCATaGGCATCTCCACTTCCTGTG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVALLAA*ASPLPV
Trigger: CACAGGAAGTGGAGATGCGCATGCAGCTAGCAGAGC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTGCAGCTCTGCTAGCTaGATGCGCATCTCCACTTCC +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVCSSAS*MRISTS
Trigger: GGAAGTGGAGATGCGCATGCAGCTAGCAGAGCTGCA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACATGTAGAATAGTTTCCTaGCTTTCCCCTTCATGCCTC +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTCRIVS*LSPSCL
Trigger: GAGGCATGAAGGGGAAAGCCAGGAAACTATTCTACA...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACATCTCCTTTTTCTTCTTaGCCTTCTGATTGGCTTCCA +
Preference number: 4 (lower is better)
Translates to: VISSDDHQGWNIALMWRTSPFSS*PSDWLP
Trigger: TGGAAGCCAATCAGAAGGCCAAGAAGAAAAAGGAGA...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
3UTR CAA 72 bp CTGCCCCCACCCAAATACTTTCATGGATGGGATGTATaGAAAGGAAATAAACCGCAGTGTAATTTCCTTCAC +
Preference number: 4 (lower is better)
Translates to: LPPPKYFHGWDV*KGNKPQCNFLH
Trigger: GTGAAGGAAATTACACTGCGGTTTATTTCCTTTCAATACATCCCATCCATGAAAGTATTTGGGTGGGGGCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGTGCTTCCGTTGAGCTaGAAGAGGTTCTGTAGTACC +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVVLPLS*KRFCST
Trigger: GGTACTACAGAACCTCTTCCAGCTCAACGGAAGCAC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR GCA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTTGTGGGAGATGGTCTaGACGTCATTCTCATCTTCG +
Preference number: 4 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVLWEMV*TSFSSS
Trigger: CGAAGATGAGAATGACGTGCAGACCATCTCCCACAA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp GAAGCCATCGGCAGCGGCGACGGGAAGTACTTTCCGGGCTGGAAATaGGCGGCCGGTTGCGCGGCGGGGCCGGCGGGGGCGAGGCGCGCG +
Preference number: 5 (lower is better)
Translates to: EAIGSGDGKYFPGWK*AAGCAAGPAGARRA
Trigger: CGCGCGCCTCGCCCCCGCCGGCCCCGCCGCGCAACCGGCCGCGCATTTCCAGCCCGGAAAGTACTTCCCGTCGCCGCTGCCGATGGCTTC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GGTGTGCGCGTGGGGGCTGCTACCCTTAGAGCGCAGGGCTTCGGGTaGGGCCAGGAGGGCGGGCACAGGGCGGGTGAGACAGGTCTGCAG +
Preference number: 5 (lower is better)
Translates to: GVRVGAATLRAQGFG*GQEGGHRAGETGLQ
Trigger: CTGCAGACCTGTCTCACCCGCCCTGTGCCCGCCCTCCTGGCCCCACCCGAAGCCCTGCGCTCTAAGGGTAGCAGCCCCCACGCGCACACC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCGCTCCAGGCACTCACTGAAGGCTGGCCCAGGCTCCACGGGGCCTaGCACCTCCTTGGCACAGCGTCCGGGTGCTGCCACACCTGTCCC +
Preference number: 5 (lower is better)
Translates to: PLQALTEGWPRLHGA*HLLGTASGCCHTCP
Trigger: GGGACAGGTGTGGCAGCACCCGGACGCTGTGCCAAGGAGGTGGCAGGCCCCGTGGAGCCTGGGCCAGCCTTCAGTGAGTGCCTGGAGCGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCCACGGGTGGCTGCCTCACCTCCCCGTCTCCATGTGGGGCCTCATaGTCCCTGCTGCGGGCACAGTCGGGTCTTTCCACTGGGCCTGGG +
Preference number: 5 (lower is better)
Translates to: PTGGCLTSPSPCGAS*SLLRAQSGLSTGPG
Trigger: CCCAGGCCCAGTGGAAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCCCACATGGAGACGGGGAGGTGAGGCAGCCACCCGTGGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CAAGCTGGCCCCCGGGACGCAGGGCAGGCAGTGAGCTTGAGTGTTTaGGCTTTCTTGGCCTGCCAGGCCCCCGCCGTGCAGGGCTCCGTG +
Preference number: 5 (lower is better)
Translates to: QAGPRDAGQAVSLSV*AFLACQAPAVQGSV
Trigger: CACGGAGCCCTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACTGCCTGCCCTGCGTCCCGGGGGCCAGCTTG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TGGCAGGGTGGGATCCTCGGTAGGCCGGCTCAGAGGGAGAGGATGTaGGGCCACTGGGGTGTGCCGACGCTGCTGAGCCCAGGCTGCTGG +
Preference number: 5 (lower is better)
Translates to: WQGGILGRPAQRERM*GHWGVPTLLSPGCW
Trigger: CCAGCAGCCTGGGCTCAGCAGCGTCGGCACACCCCAGTGGCCCCACATCCTCTCCCTCTGAGCCGGCCTACCGAGGATCCCACCCTGCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp TTTGCGCTTTCTTGGCCTGCCAGGCCCCCGCCGTGCAGGGCTCCGTaGGCTCTCCTCTCTCTCGTGGTCATGCCTGCGCTGCAGGCGAGC +
Preference number: 5 (lower is better)
Translates to: FALSWPARPPPCRAP*ALLSLVVMPALQAS
Trigger: GCTCGCCTGCAGCGCAGGCATGACCACGAGAGAGAGGAGAGCTCACGGAGCCCTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CACTGCGATGCCCACGGGTGGCTGCCTCACCTCCCCGTCTCCATGTaGGGCCTCATGCTCCCTGCTGCGGGCACAGTCGGGTCTTTCCAC +
Preference number: 5 (lower is better)
Translates to: HCDAHGWLPHLPVSM*GLMLPAAGTVGSFH
Trigger: GTGGAAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCCCACATGGAGACGGGGAGGTGAGGCAGCCACCCGTGGGCATCGCAGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp TGCTGGTGGCGGTTCCTGGCTCTGTACGCAGGCCAGTTTTCACCTTaGCCTTGGCCTTCTTCTTGCCTGGTGCACCCGGGGGCCGCCGCC +
Preference number: 5 (lower is better)
Translates to: CWWRFLALYAGQFSP*PWPSSCLVHPGAAA
Trigger: GGCGGCGGCCCCCGGGTGCACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCCTGCGTACAGAGCCAGGAACCGCCACCAGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TCCTTCGGGATCAGGACGGGCAGTCCGTCCTGCAGGTCTTCCTTGTaGATGGTGCAGGACCGTGCCAGGGCGGCGCTCTGCTCTGCGCTG +
Preference number: 5 (lower is better)
Translates to: SFGIRTGSPSCRSSL*MVQDRARAALCSAL
Trigger: CAGCGCAGAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATCCACAAGGAAGACCTGCAGGACGGACTGCCCGTCCTGATCCCGAAGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCGCTGCCTCCCGATTCTACCTCAGGAGCCACCAAGTGCTGCTGGTaGCGGATCCTGGCTACCTTCTGTCCCACTGGAGGGCCAGCAGGG +
Preference number: 5 (lower is better)
Translates to: PLPPDSTSGATKCCW*RILATFCPTGGPAG
Trigger: CCCTGCTGGCCCTCCAGTGGGACAGAAGGTAGCCAGGATCCGGCACCAGCAGCACTTGGTGGCTCCTGAGGTAGAATCGGGAGGCAGCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp GACGCAGGGCAGGCAGTGAGCTTGAGTGTTTGCGCTTTCTTGGCCTaGCAGGCCCCCGCCGTGCAGGGCTCCGTGAGCTCTCCTCTCTCT +
Preference number: 5 (lower is better)
Translates to: DAGQAVSLSVCAFLA*QAPAVQGSVSSPLS
Trigger: AGAGAGAGGAGAGCTCACGGAGCCCTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACTGCCTGCCCTGCGTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp TACAGCAGGCTGTCCTCCTTCGGGATCAGGACGGGCAGTCCGTCCTaGAGGTCTTCCTTGTGGATGGTGCAGGACCGTGCCAGGGCGGCG +
Preference number: 5 (lower is better)
Translates to: YSRLSSFGIRTGSPS*RSSLWMVQDRARAA
Trigger: CGCCGCCCTGGCACGGTCCTGCACCATCCACAAGGAAGACCTGCAGGACGGACTGCCCGTCCTGATCCCGAAGGAGGACAGCCTGCTGTA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CAGGGCAGTGGGTACTTGCGCAGAGCCAGCCCCATGGGTAGCGGATaGACAGGCGCCCGACCCTTCTTGTCCTTGCCAATGAGGGCTGGG +
Preference number: 5 (lower is better)
Translates to: QGSGYLRRASPMGSG*TGARPFLSLPMRAG
Trigger: CCCAGCCCTCATTGGCAAGGACAAGAAGGGTCGGGCGCCTGTGCATCCGCTACCCATGGGGCTGGCTCTGCGCAAGTACCCACTGCCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CGGAGTAGGAGCTGGGGCAGTCACTATCACAGGGCAGTGGGTACTTaGGCAGAGCCAGCCCCATGGGTAGCGGATGCACAGGCGCCCGAC +
Preference number: 5 (lower is better)
Translates to: RSRSWGSHYHRAVGT*AEPAPWVADAQAPD
Trigger: GTCGGGCGCCTGTGCATCCGCTACCCATGGGGCTGGCTCTGCGCAAGTACCCACTGCCCTGTGATAGTGACTGCCCCAGCTCCTACTCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GGTGGGCGTAGGAGACTCCATAGGGTGCACCATGGTCGGTGGCCATaGCCGCATCCAGGTGCCGGTCCTTTCCATCACCTGCCACGGCAC +
Preference number: 5 (lower is better)
Translates to: GGRRRLHRVHHGRWP*PHPGAGPFHHLPRH
Trigger: GTGCCGTGGCAGGTGATGGAAAGGACCGGCACCTGGATGCGGCCATGGCCACCGACCATGGTGCACCCTATGGAGTCTCCTACGCCCACC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GCCCCGCTGCCTCCCGATTCTACCTCAGGAGCCACCAAGTGCTGCTaGTGCCGGATCCTGGCTACCTTCTGTCCCACTGGAGGGCCAGCA +
Preference number: 5 (lower is better)
Translates to: APLPPDSTSGATKCC*CRILATFCPTGGPA
Trigger: TGCTGGCCCTCCAGTGGGACAGAAGGTAGCCAGGATCCGGCACCAGCAGCACTTGGTGGCTCCTGAGGTAGAATCGGGAGGCAGCGGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TCCACTGGGCCTGGGCCCTTAGTGGCTGGAAACTTGGCTTCCTGCTaGACGCAGCTGGCTTTGAGGCTGCCCAGGCCCACGAACGGAGCC +
Preference number: 5 (lower is better)
Translates to: STGPGPLVAGNLASC*TQLALRLPRPTNGA
Trigger: GGCTCCGTTCGTGGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCCAGTGGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GGTGTGGGTTCCGAGGGCAAGATGACCAACTGCGTGGCTGCATCTTaGGGGAGGGGGAACACGGAGGGCATGGAGCCGGGCACAGATGCG +
Preference number: 5 (lower is better)
Translates to: GVGSEGKMTNCVAAS*GRGNTEGMEPGTDA
Trigger: CGCATCTGTGCCCGGCTCCATGCCCTCCGTGTTCCCCCTCCCCCAAGATGCAGCCACGCAGTTGGTCATCTTGCCCTCGGAACCCACACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GGCAGATGGGTAAAGTGCAGGGGGCGCTGGGCCGAGGTGGTGGTGTaGGGCAACTCGCAGGGGTCTTCAAAGTGGGCGACTGACAGCAGG +
Preference number: 5 (lower is better)
Translates to: GRWVKCRGRWAEVVV*GNSQGSSKWATDSR
Trigger: CCTGCTGTCAGTCGCCCACTTTGAAGACCCCTGCGAGTTGCCCCACACCACCACCTCGGCCCAGCGCCCCCTGCACTTTACCCATCTGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CTGGAAGGCACCGAGGCCGGCAGGCAGCCCCTTGCTCTTGACCTTTaGCTTCAGCTGGGCCACCTTGTGGGCCACCGAGGATGGCAACTC +
Preference number: 5 (lower is better)
Translates to: LEGTEAGRQPLALDL*LQLGHLVGHRGWQL
Trigger: GAGTTGCCATCCTCGGTGGCCCACAAGGTGGCCCAGCTGAAGCCAAAGGTCAAGAGCAAGGGGCTGCCTGCCGGCCTCGGTGCCTTCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CGGTGGCCAGCCCCGGCCCATCCTCGTCCTCATCGGAGTAGGAGCTaGGGCAGTCACTATCACAGGGCAGTGGGTACTTGCGCAGAGCCA +
Preference number: 5 (lower is better)
Translates to: RWPAPAHPRPHRSRS*GSHYHRAVGTCAEP
Trigger: TGGCTCTGCGCAAGTACCCACTGCCCTGTGATAGTGACTGCCCCAGCTCCTACTCCGATGAGGACGAGGATGGGCCGGGGCTGGCCACCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTGCAGGGCCTGCCTCCTaGCAGGGCCCCTCGGCAGGC +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGAGPAS*QGPSAG
Trigger: GCCTGCCGAGGGGCCCTGCAAGGAGGCAGGCCCTGC...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGGGTCGCCGCTCGCCCTaGCCCTCAGCTTTTAGGTGG +
Preference number: 5 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGGRRSP*PSAFRW
Trigger: CCACCTAAAAGCTGAGGGCAAGGGCGAGCGGCGACC...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
66% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTAGTGTTTGCGCTTTCTaGGCCTGCCAGGCCCCCGCC +
Preference number: 5 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPSVCAF*ACQAPA
Trigger: GGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGGCGCCCGCTCCAGCTaGGCTCCCACCTTGGTCTTT +
Preference number: 5 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPGARSS*APTLVF
Trigger: AAAGACCAAGGTGGGAGCCAAGCTGGAGCGGGCGCC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGTACCCCCGGCCCTTaGCCACCTGCCGCCGCCGCT +
Preference number: 5 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGSTPGP*PPAAAA
Trigger: AGCGGCGGCGGCAGGTGGCAAAGGGCCGGGGGTACT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCGGGCCCGCAGCTTCTaGGTGCTTCCGTTGAGCTGG +
Preference number: 5 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGRARSF*VLPLSW
Trigger: CCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp AGCTCTCCAGCAGCCGGCTCACCGCCCGCCCCTGGCCCTGCTTGCTaGCAGCCTCTCTCTTCACCTTCGTCAGCTTCCTGCTCTTTCCCA +
Preference number: 5 (lower is better)
Translates to: SSPAAGSPPAPGPAC*QPLSSPSSASCSFP
Trigger: TGGGAAAGAGCAGGAAGCTGACGAAGGTGAAGAGAGAGGCTGTCAGCAAGCAGGGCCAGGGGCGGGCGGTGAGCCGGCTGCTGGAGAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp ACAGCAAAGCTCTCCAGCAGCCGGCTCACCGCCCGCCCCTGGCCCTaGTTGCTGACAGCCTCTCTCTTCACCTTCGTCAGCTTCCTGCTC +
Preference number: 5 (lower is better)
Translates to: TAKLSSSRLTARPWP*LLTASLFTFVSFLL
Trigger: GAGCAGGAAGCTGACGAAGGTGAAGAGAGAGGCTGTCAGCAAGCAGGGCCAGGGGCGGGCGGTGAGCCGGCTGCTGGAGAGCTTTGCTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GCGGGCACAGTCGGGTCTTTCCACTGGGCCTGGGCCCTTAGTGGCTaGAAACTTGGCTTCCTGCTGGACGCAGCTGGCTTTGAGGCTGCC +
Preference number: 5 (lower is better)
Translates to: AGTVGSFHWAWALSG*KLGFLLDAAGFEAA
Trigger: GGCAGCCTCAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCCAGTGGAAAGACCCGACTGTGCCCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TGGGGCCTCATGCTCCCTGCTGCGGGCACAGTCGGGTCTTTCCACTaGGCCTGGGCCCTTAGTGGCTGGAAACTTGGCTTCCTGCTGGAC +
Preference number: 5 (lower is better)
Translates to: WGLMLPAAGTVGSFH*AWALSGWKLGFLLD
Trigger: GTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCCAGTGGAAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CTGCCTTCCCTGGTGGGAGTCCTCCCTCAACAGGAGGGGGTAGATTaGCAAGGTCCTGGGTGGCATCCCTGGCCCTTGAGAGCAGCCCAG +
Preference number: 5 (lower is better)
Translates to: LPSLVGVLPQQEGVD*QGPGWHPWPLRAAQ
Trigger: CTGGGCTGCTCTCAAGGGCCAGGGATGCCACCCAGGACCTTGCCAATCTACCCCCTCCTGTTGAGGGAGGACTCCCACCAGGGAAGGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CACAGTAGCAGCCACCAAGGCATCCAAGCCTGGCAGCGCTTTGGGTaGGTGGCTATGGTTGGGAGTCCCCCAGTCCACCTCCGAGTCCCC +
Preference number: 5 (lower is better)
Translates to: HSSSHQGIQAWQRFG*VAMVGSPPVHLRVP
Trigger: GGGGACTCGGAGGTGGACTGGGGGACTCCCAACCATAGCCACCCACCCAAAGCGCTGCCAGGCTTGGATGCCTTGGTGGCTGCTACTGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TTCAGCTGGGCCACCTTGTGGGCCACCGAGGATGGCAACTCGGCCTaGCCACAGCTCTTCTTGCACCGCACCTTCTCCGAGGAGACGGAC +
Preference number: 5 (lower is better)
Translates to: FSWATLWATEDGNSA*PQLFLHRTFSEETD
Trigger: GTCCGTCTCCTCGGAGAAGGTGCGGTGCAAGAAGAGCTGTGGCCAGGCCGAGTTGCCATCCTCGGTGGCCCACAAGGTGGCCCAGCTGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp AACAGGGTGTCCCGGGCCCGCAGCTTCTTGGTGCTTCCGTTGAGCTaGAAGAGGTTCTGTAGTACCCCCGGCCCTTTGCCACCTGCCGCC +
Preference number: 5 (lower is better)
Translates to: NRVSRARSFLVLPLS*KRFCSTPGPLPPAA
Trigger: GGCGGCAGGTGGCAAAGGGCCGGGGGTACTACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCGGGACACCCTGTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGGTCGCCGCTCGCCCTaGCCCTCAGCTTTTAGGTGG +
Preference number: 5 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAGRRSP*PSAFRW
Trigger: CCACCTAAAAGCTGAGGGCAAGGGCGAGCGGCGACC...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCTGCGTGGCTGCATCTaGGGGGAGGGGGAACACGGA +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRLRGCI*GEGEHG
Trigger: TCCGTGTTCCCCCTCCCCCAAGATGCAGCCACGCAG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCACTGCGTGGCTGCATCTaGGGGGAGGGGGAACACGGA +
Preference number: 5 (lower is better)
Translates to: RELDQLHHWKPCSSWGKALRGCI*GEGEHG
Trigger: TCCGTGTTCCCCCTCCCCCAAGATGCAGCCACGCAG...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp GTCGGTGGCCATGGCCGCATCCAGGTGCCGGTCCTTTCCATCACCTaGCACGGCACAGGCCTCTGCTACTTGGAAAGAGCGGCTCTTGTC +
Preference number: 5 (lower is better)
Translates to: VGGHGRIQVPVLSIT*HGTGLCYLERAALV
Trigger: GACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTGTGCCGTGGCAGGTGATGGAAAGGACCGGCACCTGGATGCGGCCATGGCCACCGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CTTTCCACTGGGCCTGGGCCCTTAGTGGCTGGAAACTTGGCTTCCTaGTGGACGCAGCTGGCTTTGAGGCTGCCCAGGCCCACGAACGGA +
Preference number: 5 (lower is better)
Translates to: LSTGPGPLVAGNLAS*WTQLALRLPRPTNG
Trigger: TCCGTTCGTGGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCCAGTGGAAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCTGCCTCATGTGCCACAGCCACTGCGGGTTGGGCTTGGAATTTGTaGATCTCCCTGCCACTGTCCCCATCGGGGTGTGGATGCCGTGCC +
Preference number: 5 (lower is better)
Translates to: PASCATATAGWAWNL*ISLPLSPSGCGCRA
Trigger: GGCACGGCATCCACACCCCGATGGGGACAGTGGCAGGGAGATGCACAAATTCCAAGCCCAACCCGCAGTGGCTGTGGCACATGAGGCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp GGAGGTCACACCCTCATGGTCCAGCTTAACCAGAAACTCGCCGCCTaGCCGCCGCCTCCCGGCCTTTTCTGCTTCAGCCCGTTCAGCCTT +
Preference number: 5 (lower is better)
Translates to: GGHTLMVQLNQKLAA*PPPPGLFCFSPFSL
Trigger: AAGGCTGAACGGGCTGAAGCAGAAAAGGCCGGGAGGCGGCGGGCAGGCGGCGAGTTTCTGGTTAAGCTGGACCATGAGGGTGTGACCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CTCATGCTCCCTGCTGCGGGCACAGTCGGGTCTTTCCACTGGGCCTaGGCCCTTAGTGGCTGGAAACTTGGCTTCCTGCTGGACGCAGCT +
Preference number: 5 (lower is better)
Translates to: LMLPAAGTVGSFHWA*ALSGWKLGFLLDAA
Trigger: AGCTGCGTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCCAGTGGAAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CGGATGCACAGGCGCCCGACCCTTCTTGTCCTTGCCAATGAGGGCTaGGTGTGCGTAACTGGGGTTGCTAAGAGGTCGCCCCAGCTTGGG +
Preference number: 5 (lower is better)
Translates to: RMHRRPTLLVLANEG*VCVTGVAKRSPQLG
Trigger: CCCAAGCTGGGGCGACCTCTTAGCAACCCCAGTTACGCACACCCAGCCCTCATTGGCAAGGACAAGAAGGGTCGGGCGCCTGTGCATCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCAGCAGGGTGATAGCTaGACCAGGCCTGCAGTGGCG +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRQQGDS*TRPAVA
Trigger: CGCCACTGCAGGCCTGGTCAAGCTATCACCCTGCTG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTACAGGAGGGGGTAGATaGGCAAGGTCCTGGGTGGCA +
Preference number: 5 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPTGGGR*ARSWVA
Trigger: TGCCACCCAGGACCTTGCCAATCTACCCCCTCCTGT...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCACGCTCACTGGCAAGTTaGCTGCCCTCCTCTCGGCAG +
Preference number: 5 (lower is better)
Translates to: RELDQLHHWKPCSSWGKARSLAS*LPSSRQ
Trigger: CTGCCGAGAGGAGGGCAGCAAACTTGCCAGTGAGCG...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGAGTACCCCCGGCCCTTaGCCACCTGCCGCCGCCGCT +
Preference number: 5 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGSTPGP*PPAAAA
Trigger: AGCGGCGGCGGCAGGTGGCAAAGGGCCGGGGGTACT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACAGGGCAGTGGGTACTaGCGCAGAGCCAGCCCCATG +
Preference number: 5 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTQGSGY*RRASPM
Trigger: CATGGGGCTGGCTCTGCGCAAGTACCCACTGCCCTG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp CGTCAGCTTCCTGCTCTTTCCCAGGATGGCCTTGGCGTTGCGGGCTaGCAGAGCGATGGACAAGGCCCCATTCTTCCGCCTCAGGACTGG +
Preference number: 5 (lower is better)
Translates to: RQLPALSQDGLGVAG*QSDGQGPILPPQDW
Trigger: CCAGTCCTGAGGCGGAAGAATGGGGCCTTGTCCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCCTGGGAAAGAGCAGGAAGCTGACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp TGGGAAACAGGGTGTCCCGGGCCCGCAGCTTCTTGGTGCTTCCGTTaGGCTGGAAGAGGTTCTGTAGTACCCCCGGCCCTTTGCCACCTG +
Preference number: 5 (lower is better)
Translates to: WETGCPGPAASWCFR*AGRGSVVPPALCHL
Trigger: CAGGTGGCAAAGGGCCGGGGGTACTACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCGGGACACCCTGTTTCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp GACAGAGCGATGGACAAGGCCCCATTCTTCCGCCTCAGGACTGGCTaGAACATGGCGCTCTTGCGGGTGGCTCTCTTGAGGCGCTCACTG +
Preference number: 5 (lower is better)
Translates to: DRAMDKAPFFRLRTG*NMALLRVALLRRSL
Trigger: CAGTGAGCGCCTCAAGAGAGCCACCCGCAAGAGCGCCATGTTGCAGCCAGTCCTGAGGCGGAAGAATGGGGCCTTGTCCATCGCTCTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CACAGGCGCCCGACCCTTCTTGTCCTTGCCAATGAGGGCTGGGTGTaGGTAACTGGGGTTGCTAAGAGGTCGCCCCAGCTTGGGTCCGAA +
Preference number: 5 (lower is better)
Translates to: HRRPTLLVLANEGWV*VTGVAKRSPQLGSE
Trigger: TTCGGACCCAAGCTGGGGCGACCTCTTAGCAACCCCAGTTACGCACACCCAGCCCTCATTGGCAAGGACAAGAAGGGTCGGGCGCCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCTCTGTCCCCAGGAGTGCCTGGCAGTCCTCACTGTCATAGCCGCTaGCTGCCTCATGTGCCACAGCCACTGCGGGTTGGGCTTGGAATT +
Preference number: 5 (lower is better)
Translates to: PLSPGVPGSPHCHSR*LPHVPQPLRVGLGI
Trigger: AATTCCAAGCCCAACCCGCAGTGGCTGTGGCACATGAGGCAGGCAGCGGCTATGACAGTGAGGACTGCCAGGCACTCCTGGGGACAGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TCTTGTCAGCCAGGTGTCCCACAGAAGGCACAAAGGTGGGCCCGCTaGCCTTTAGGTCCCGGGAGACTTTGTCCTGCAGAGGGCAGAGCC +
Preference number: 5 (lower is better)
Translates to: SCQPGVPQKAQRWAR*PLGPGRLCPAEGRA
Trigger: GGCTCTGCCCTCTGCAGGACAAAGTCTCCCGGGACCTAAAGGCCAGCGGGCCCACCTTTGTGCCTTCTGTGGGACACCTGGCTGACAAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CTTGACCTTTGGCTTCAGCTGGGCCACCTTGTGGGCCACCGAGGATaGCAACTCGGCCTGGCCACAGCTCTTCTTGCACCGCACCTTCTC +
Preference number: 5 (lower is better)
Translates to: LDLWLQLGHLVGHRG*QLGLATALLAPHLL
Trigger: GAGAAGGTGCGGTGCAAGAAGAGCTGTGGCCAGGCCGAGTTGCCATCCTCGGTGGCCCACAAGGTGGCCCAGCTGAAGCCAAAGGTCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGCAGGGCCTGCCTCCTaGCAGGGCCCCTCGGCAGGC +
Preference number: 5 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGAGPAS*QGPSAG
Trigger: GCCTGCCGAGGGGCCCTGCAAGGAGGCAGGCCCTGC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAAGGTCCCGGGAGACTTaGTCCTGCAGAGGGCAGAGC +
Preference number: 5 (lower is better)
Translates to: APCSSKARLLSLHQTGHGRSRET*SCRGQS
Trigger: GCTCTGCCCTCTGCAGGACAAAGTCTCCCGGGACCT...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACTCCAGGGCAGCTGCTaGAAGGGTGGATCCGGGCAA +
Preference number: 5 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLQGSC*KGGSGQ
Trigger: TTGCCCGGATCCACCCTTCAAGCAGCTGCCCTGGAG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGGCAGCCCCTTGCTCTaGACCTTTGGCTTCAGCTGG +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRGSPLL*TFGFSW
Trigger: CCAGCTGAAGCCAAAGGTCAAGAGCAAGGGGCTGCC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGGCGCCCGCTCCAGCTaGGCTCCCACCTTGGTCTTT +
Preference number: 5 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAGARSS*APTLVF
Trigger: AAAGACCAAGGTGGGAGCCAAGCTGGAGCGGGCGCC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATAGTACCCCCGGCCCTTaGCCACCTGCCGCCGCCGCT +
Preference number: 5 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHSTPGP*PPAAAA
Trigger: AGCGGCGGCGGCAGGTGGCAAAGGGCCGGGGGTACT...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGCGGGCCCGCAGCTTCTaGGTGCTTCCGTTGAGCTGG +
Preference number: 5 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGRARSF*VLPLSW
Trigger: CCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCG...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAAGAGGTCGCCCCAGCTaGGGTCCGAAGTCCTTGTCG +
Preference number: 5 (lower is better)
Translates to: APCSSKARLLSLHQTGHGRGRPS*GPKSLS
Trigger: CGACAAGGACTTCGGACCCAAGCTGGGGCGACCTCT...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCGACCCTTCTTGTCCTaGCCAATGAGGGCTGGGTGT +
Preference number: 5 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGRPFLS*PMRAGC
Trigger: ACACCCAGCCCTCATTGGCAAGGACAAGAAGGGTCG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp TGTGGATGGTGCAGGACCGTGCCAGGGCGGCGCTCTGCTCTGCGCTaGGCTGTACACCGGCTTCTTCCTCTTCTTCTTCCTCATCCGAGA +
Preference number: 5 (lower is better)
Translates to: CGWCRTVPGRRSALR*AVHRLLPLLLPHPR
Trigger: TCTCGGATGAGGAAGAAGAAGAGGAAGAAGCCGGTGTACAGCTCAGCGCAGAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATCCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CTGGAGGGCCAGCAGGGGCCTCTTTGTTGGCCACTTTGTCTAAAGTaGAGCAGGCCTGGGTGGCCTTCCCACCCAGTGGGTCTTGGTGAT +
Preference number: 5 (lower is better)
Translates to: LEGQQGPLCWPLCLK*SRPGWPSHPVGLGD
Trigger: ATCACCAAGACCCACTGGGTGGGAAGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTGGCCCTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CAGCACACAGCAGACTTAGGCTTGCACGAACAGCCTTGGCTTTCTTaGTGTCACTTCTGGCAAGCTGGCCCCCGGGACGCAGGGCAGGCA +
Preference number: 5 (lower is better)
Translates to: QHTADLGLHEQPWLS*CHFWQAGPRDAGQA
Trigger: TGCCTGCCCTGCGTCCCGGGGGCCAGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAGCCTAAGTCTGCTGTGTGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCTCTGTCCCCAGGAGTGCCTGGCAGTCCTCACTGTCATAGCCGTTaGCTGCCTCATGTGCCACAGCCACTGCGGGTTGGGCTTGGAATT +
Preference number: 5 (lower is better)
Translates to: PLSPGVPGSPHCHSR*LPHVPQPLRVGLGI
Trigger: AATTCCAAGCCCAACCCGCAGTGGCTGTGGCACATGAGGCAGGCAACGGCTATGACAGTGAGGACTGCCAGGCACTCCTGGGGACAGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044985.14
CDS CCA 90 bp CTTTTAGGTGGGCGTAGGAGACTCCATAGGGTGCACCATGGTCGGTaGCCATGGCCGCATCCAGGTGCCGGTCCTTTCCATCACCTGCCA +
Preference number: 5 (lower is better)
Translates to: LLGGRRRLHRVHHGR*PWPHPGAGPFHHLP
Trigger: TGGCAGGTGATGGAAAGGACCGGCACCTGGATGCGGCCATGGCCACCGACCATGGTGCACCCTATGGAGTCTCCTACGCCCACCTAAAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TGCAGCAGGCCTGGGTGGCCTTCCCACCCAGTGGGTCTTGGTGATTaGACCGGGCACAGTCCTGTGAAGTGGGCAACTCAAAGTAGCCAC +
Preference number: 5 (lower is better)
Translates to: CSRPGWPSHPVGLGD*TGHSPVKWATQSSH
Trigger: GTGGCTACTTTGAGTTGCCCACTTCACAGGACTGTGCCCGGTCCAATCACCAAGACCCACTGGGTGGGAAGGCCACCCAGGCCTGCTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TGGCTACCTTCTGTCCCACTGGAGGGCCAGCAGGGGCCTCTTTGTTaGCCACTTTGTCTAAAGTGCAGCAGGCCTGGGTGGCCTTCCCAC +
Preference number: 5 (lower is better)
Translates to: WLPSVPLEGQQGPLC*PLCLKCSRPGWPSH
Trigger: GTGGGAAGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTGGCCCTCCAGTGGGACAGAAGGTAGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GCTTGCGCTGGAACTGGGCAACTCGCTGTAGCTCCAGGGCCTGTGTaGCCCGATGTTGCTGCTGCTGCTGTTGCTGCTGCTGCTGTTGTT +
Preference number: 5 (lower is better)
Translates to: ACAGTGQLAVAPGPV*PDVAAAAVAAAAVV
Trigger: AACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACATCGGGCCACACAGGCCCTGGAGCTACAGCGAGTTGCCCAGTTCCAGCGCAAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CTTGCACGAACAGCCTTGGCTTTCTTGCTGTCACTTCTGGCAAGCTaGCCCCCGGGACGCAGGGCAGGCAGTGAGCTTGAGTGTTTGCGC +
Preference number: 5 (lower is better)
Translates to: LARTALAFLLSLLAS*PPGRRAGSELECLR
Trigger: GCGCAAACACTCAAGCTCACTGCCTGCCCTGCGTCCCGGGGGCCAGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TGCTCTTTCCCAGGATGGCCTTGGCGTTGCGGGCTGACAGAGCGATaGACAAGGCCCCATTCTTCCGCCTCAGGACTGGCTGCAACATGG +
Preference number: 5 (lower is better)
Translates to: CSFPGWPWRCGLTER*TRPHSSASGLAATW
Trigger: CCATGTTGCAGCCAGTCCTGAGGCGGAAGAATGGGGCCTTGTCCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCCTGGGAAAGAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GTAGGCACAGACCCGGGTACCAGGTGGAAGGTACCGACTGGACTGTaGCTGGACATCAAGAACCGCCTCCTGCAGCAGCTGTTCCAGCGA +
Preference number: 5 (lower is better)
Translates to: VGTDPGTRWKVPTGL*LDIKNRLLQQLFQR
Trigger: TCGCTGGAACAGCTGCTGCAGGAGGCGGTTCTTGATGTCCAGCCACAGTCCAGTCGGTACCTTCCACCTGGTACCCGGGTCTGTGCCTAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TGCCTCTGCGGCCTAGGAAGTGGTCTGAGGCCCCCGTGGGGGACTTaGCACCTGAGGTTAGGAGGTCGACTTTGCCAGCTTTGTCTTTGC +
Preference number: 5 (lower is better)
Translates to: CLCGLGSGLRPPWGT*HLRLGGRLCQLCLC
Trigger: GCAAAGACAAAGCTGGCAAAGTCGACCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGGCCTCAGACCACTTCCTAGGCCGCAGAGGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp AGTCACTATCACAGGGCAGTGGGTACTTGCGCAGAGCCAGCCCCATaGGTAGCGGATGCACAGGCGCCCGACCCTTCTTGTCCTTGCCAA +
Preference number: 5 (lower is better)
Translates to: SHYHRAVGTCAEPAP*VADAQAPDPSCPCQ
Trigger: TTGGCAAGGACAAGAAGGGTCGGGCGCCTGTGCATCCGCTACCCATGGGGCTGGCTCTGCGCAAGTACCCACTGCCCTGTGATAGTGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGCAGGGCCTGCCTCCTaGCAGGGCCCCTCGGCAGGC +
Preference number: 5 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPAGPAS*QGPSAG
Trigger: GCCTGCCGAGGGGCCCTGCAAGGAGGCAGGCCCTGC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCAGTGCATAGAGCTCTaGCTGCCGAAGCAGCTGGGA +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRQCIEL*LPKQLG
Trigger: TCCCAGCTGCTTCGGCAGCAAGAGCTCTATGCACTG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGTTAAGGCAACTGGCTaGTGGGTGGACTTTGGGGTC +
Preference number: 5 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPVKATG*WVDFGV
Trigger: GACCCCAAAGTCCACCCACAAGCCAGTTGCCTTAAC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATGTGGACCTTCACGCTaGTCCAGGGCAGCTGGGCTC +
Preference number: 5 (lower is better)
Translates to: GGCIFAQTSSWLADLLAACGPSR*SRAAGL
Trigger: GAGCCCAGCTGCCCTGGACAAGCGTGAAGGTCCACA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAGCCAGGTGCTGCAGGTaGAAGGCCAGCACATCCTCA +
Preference number: 5 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTARCCR*KASTSS
Trigger: TGAGGATGTGCTGGCCTTCAACCTGCAGCACCTGGC...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGCTTGCGTTGCAGGATTaGCATTCTGGGGGTGAGCCT +
Preference number: 5 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGLALQD*HSGGEP
Trigger: AGGCTCACCCCCAGAATGCAAATCCTGCAACGCAAG...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGCGAGCCAGCTCCCGTaGCTTCTCCTTGTAGCGCCT +
Preference number: 5 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAASQLP*LLLVAP
Trigger: AGGCGCTACAAGGAGAAGCAACGGGAGCTGGCTCGC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTAGTGTTTGCGCTTTCTaGGCCTGCCAGGCCCCCGCC +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGSVCAF*ACQAPA
Trigger: GGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACT...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGGCAGCCCCTTGCTCTaGACCTTTGGCTTCAGCTGG +
Preference number: 5 (lower is better)
Translates to: APCSSKARLLSLHQTGHGGSPLL*TFGFSW
Trigger: CCAGCTGAAGCCAAAGGTCAAGAGCAAGGGGCTGCC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATTGGCCCTAAGCAGCTaGTGGGCTCCTCCGGGAAGG +
Preference number: 5 (lower is better)
Translates to: GGCIFAQTSSWLADLLAALALSS*WAPPGR
Trigger: CCTTCCCGGAGGAGCCCACAAGCTGCTTAGGGCCAA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAGAGGTCGCCCCAGCTaGGGTCCGAAGTCCTTGTCG +
Preference number: 5 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGRGRPS*GPKSLS
Trigger: CGACAAGGACTTCGGACCCAAGCTGGGGCGACCTCT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTAAGAGGTCGCCCCAGCTaGGGTCCGAAGTCCTTGTCG +
Preference number: 5 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVRGRPS*GPKSLS
Trigger: CGACAAGGACTTCGGACCCAAGCTGGGGCGACCTCT...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp TTTACCCATGAGGAAGCGGTCAAACTCCTTAGGACCCTTCTGCAGTaGGGCAGCCTCGATGCGGTCCCGGCTGCAGGACCCGATGGGATG +
Preference number: 5 (lower is better)
Translates to: FTHEEAVKLLRTLLQ*GSLDAVPAAGPDGM
Trigger: CATCCCATCGGGTCCTGCAGCCGGGACCGCATCGAGGCTGCCTCACTGCAGAAGGGTCCTAAGGAGTTTGACCGCTTCCTCATGGGTAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp ACAGCTCACTCTTCTGCCGCTGGGTCTCCAGGTCAGCCAGCTCACTaGGCAGGGCAATCCCATGAATCCCTGAGCTATGCGGCAGAGGAG +
Preference number: 5 (lower is better)
Translates to: TAHSSAAGSPGQPAH*AGQSHESLSYAAEE
Trigger: CTCCTCTGCCGCATAGCTCAGGGATTCATGGGATTGCCCTGCTCAGTGAGCTGGCTGACCTGGAGACCCAGCGGCAGAAGAGTGAGCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp CAAGTTTGCTGCCCTCCTCTCGGCAGGCAAAAGTCCGGGTGGGACTaGAAAGGGTGTCTCTGCTGGTGGCGGTTCCTGGCTCTGTACGCA +
Preference number: 5 (lower is better)
Translates to: QVCCPPLGRQKSGWD*KGCLCWWRFLALYA
Trigger: TGCGTACAGAGCCAGGAACCGCCACCAGCAGAGACACCCTTTTCAGTCCCACCCGGACTTTTGCCTGCCGAGAGGAGGGCAGCAAACTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp ACCTCTTTACCCATGAGGAAGCGGTCAAACTCCTTAGGACCCTTCTaGAGTGAGGCAGCCTCGATGCGGTCCCGGCTGCAGGACCCGATG +
Preference number: 5 (lower is better)
Translates to: TSLPMRKRSNSLGPF*SEAASMRSRLQDPM
Trigger: CATCGGGTCCTGCAGCCGGGACCGCATCGAGGCTGCCTCACTGCAGAAGGGTCCTAAGGAGTTTGACCGCTTCCTCATGGGTAAAGAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp ATCCAGGTGCCGGTCCTTTCCATCACCTGCCACGGCACAGGCCTCTaGTACTTGGAAAGAGCGGCTCTTGTCAGCCAGGTGTCCCACAGA +
Preference number: 5 (lower is better)
Translates to: IQVPVLSITCHGTGL*YLERAALVSQVSHR
Trigger: TCTGTGGGACACCTGGCTGACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTGTGCCGTGGCAGGTGATGGAAAGGACCGGCACCTGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCAGGCCCACGAACGGAGCCTTCTGGCCCACGACTAGGGCTTGGTTaGTGTATTTCAGCAGGTTCTTCATGGCCGAGACCTCATCTGGCG +
Preference number: 5 (lower is better)
Translates to: PGPRTEPSGPRLGLG*CISAGSSWPRPHLA
Trigger: CGCCAGATGAGGTCTCGGCCATGAAGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCGTGGGCCAGAAGGCTCCGTTCGTGGGCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp AACTGGGCAACTCGCTGTAGCTCCAGGGCCTGTGTGGCCCGATGTTaGTGCTGCTGCTGTTGCTGCTGCTGCTGTTGTTGTTGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: NWATRCSSRACVARC*CCCCCCCCCCCCCC
Trigger: GCAGCAGCAACAACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACATCGGGCCACACAGGCCCTGGAGCTACAGCGAGTTGCCCAGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp TGTCCCCAGGAGTGCCTGGCAGTCCTCACTGTCATAGCCGTTGCCTaGCTCATGTGCCACAGCCACTGCGGGTTGGGCTTGGAATTTGTG +
Preference number: 5 (lower is better)
Translates to: CPQECLAVLTVIAVA*LMCHSHCGLGLEFV
Trigger: CACAAATTCCAAGCCCAACCCGCAGTGGCTGTGGCACATGAGGCAGGCAACGGCTATGACAGTGAGGACTGCCAGGCACTCCTGGGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044985.14
CDS GCA 90 bp TTCCTTGTGGATGGTGCAGGACCGTGCCAGGGCGGCGCTCTGCTCTaGGCTGAGCTGTACACCGGCTTCTTCCTCTTCTTCTTCCTCATC +
Preference number: 5 (lower is better)
Translates to: FLVDGAGPCQGGALL*AELYTGFFLFFFLI
Trigger: GATGAGGAAGAAGAAGAGGAAGAAGCCGGTGTACAGCTCAGCGCAGAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATCCACAAGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TGCCGGTCCTTTCCATCACCTGCCACGGCACAGGCCTCTGCTACTTaGAAAGAGCGGCTCTTGTCAGCCAGGTGTCCCACAGAAGGCACA +
Preference number: 5 (lower is better)
Translates to: CRSFPSPATAQASAT*KERLLSARCPTEGT
Trigger: TGTGCCTTCTGTGGGACACCTGGCTGACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTGTGCCGTGGCAGGTGATGGAAAGGACCGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GGCCCACGACTAGGGCTTGGTTGCTGTATTTCAGCAGGTTCTTCATaGCCGAGACCTCATCTGGCGGAGTGGGCAGCTCCTGGGACAGGA +
Preference number: 5 (lower is better)
Translates to: GPRLGLGCCISAGSS*PRPHLAEWAAPGTG
Trigger: TCCTGTCCCAGGAGCTGCCCACTCCGCCAGATGAGGTCTCGGCCATGAAGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCGTGGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp ACGCAGCTGGCTTTGAGGCTGCCCAGGCCCACGAACGGAGCCTTCTaGCCCACGACTAGGGCTTGGTTGCTGTATTTCAGCAGGTTCTTC +
Preference number: 5 (lower is better)
Translates to: TQLALRLPRPTNGAF*PTTRAWLLYFSRFF
Trigger: GAAGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCGTGGGCCAGAAGGCTCCGTTCGTGGGCCTGGGCAGCCTCAAAGCCAGCTGCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GACTTAGGCTTGCACGAACAGCCTTGGCTTTCTTGCTGTCACTTCTaGCAAGCTGGCCCCCGGGACGCAGGGCAGGCAGTGAGCTTGAGT +
Preference number: 5 (lower is better)
Translates to: DLGLHEQPWLSCCHF*QAGPRDAGQAVSLS
Trigger: ACTCAAGCTCACTGCCTGCCCTGCGTCCCGGGGGCCAGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAGCCTAAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GACTCCAGTAGGCACAGACCCGGGTACCAGGTGGAAGGTACCGACTaGACTGTGGCTGGACATCAAGAACCGCCTCCTGCAGCAGCTGTT +
Preference number: 5 (lower is better)
Translates to: DSSRHRPGYQVEGTD*TVAGHQEPPPAAAV
Trigger: AACAGCTGCTGCAGGAGGCGGTTCTTGATGTCCAGCCACAGTCCAGTCGGTACCTTCCACCTGGTACCCGGGTCTGTGCCTACTGGAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp ACACCGGGACTTCTGACTCCAGTAGGCACAGACCCGGGTACCAGGTaGAAGGTACCGACTGGACTGTGGCTGGACATCAAGAACCGCCTC +
Preference number: 5 (lower is better)
Translates to: TPGLLTPVGTDPGTR*KVPTGLWLDIKNRL
Trigger: GAGGCGGTTCTTGATGTCCAGCCACAGTCCAGTCGGTACCTTCCACCTGGTACCCGGGTCTGTGCCTACTGGAGTCAGAAGTCCCGGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCTGCCCTCTGCTCCCTaGCTAACTTTCTCTTTGCCC +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRLPSAP*LTFSLP
Trigger: GGGCAAAGAGAAAGTTAGCAAGGGAGCAGAGGGCAG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCAAGAGGTGAGGTGTTaGGGGCGGCCCTCACAGGAC +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGQEVRC*GRPSQD
Trigger: GTCCTGTGAGGGCCGCCCCAAACACCTCACCTCTTG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTACTGGCCAGGGAGGCCTaGCCCATGTCTCCATTGAGT +
Preference number: 5 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVLAREA*PMSPLS
Trigger: ACTCAATGGAGACATGGGCAAGGCCTCCCTGGCCAG...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTCAGCAGGGTGATAGCTaGACCAGGCCTGCAGTGGCG +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGQQGDS*TRPAVA
Trigger: CGCCACTGCAGGCCTGGTCAAGCTATCACCCTGCTG...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGATGGTACTAGGCACCTaGGAGCCAGGCCCTGGGCTG +
Preference number: 5 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRMVLGT*EPGPGL
Trigger: CAGCCCAGGGCCTGGCTCCAAGGTGCCTAGTACCAT...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCAGGGAGGAACGTCCTaGGGGGCTCAGGCCGAGTCC +
Preference number: 5 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSQGGTS*GAQAES
Trigger: GGACTCGGCCTGAGCCCCCAAGGACGTTCCTCCCTG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGAGTGTTTGCGCTTTCTaGGCCTGCCAGGCCCCCGCC +
Preference number: 5 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWSVCAF*ACQAPA
Trigger: GGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACT...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCACACAGCCACTGCGGGTaGGGCTTGGAATTTGTGCAT +
Preference number: 5 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAHSHCG*GLEFVH
Trigger: ATGCACAAATTCCAAGCCCAACCCGCAGTGGCTGTG...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCACAGCCACTGCGGGTaGGGCTTGGAATTTGTGCAT +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRHSHCG*GLEFVH
Trigger: ATGCACAAATTCCAAGCCCAACCCGCAGTGGCTGTG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGTCTCATGTGACCATCCCACGGCCTTTGGCCACGCCCCCATTCCAGCAGCCTGTTTTCACCTTGCCCTaGGCCTTCTTCTTGCCTGGT +
Preference number: 5 (lower is better)
Translates to: GSHVTIPRPLATPPFQQPVFTLP*AFFLPG
Trigger: ACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAAC...AGGCTGCTGGAATGGGGGCGTGGCCAAAGGCCGTGGGATGGTCACATGAGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATTGCGGGTGGCTCTCTaGAGGCGCTCACTGGCAAGT +
Preference number: 5 (lower is better)
Translates to: GGCIFAQTSSWLADLLAALRVAL*RRSLAS
Trigger: ACTTGCCAGTGAGCGCCTCAAGAGAGCCACCCGCAA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGTCTGTACACTGGATCTaGAAGTCCGGAGGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRSVHWI*KSGGSS
Trigger: GCTGCTGCCTCCGGACTTCAAGATCCAGTGTACAGA...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCGGGCCCGCAGCTTCTaGGTGCTTCCGTTGAGCTGG +
Preference number: 5 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGRARSF*VLPLSW
Trigger: CCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTTGGCCCTAAGCAGCTaGTGGGCTCCTCCGGGAAGG +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGLALSS*WAPPGR
Trigger: CCTTCCCGGAGGAGCCCACAAGCTGCTTAGGGCCAA...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACGACCCTTCTTGTCCTaGCCAATGAGGGCTGGGTGT +
Preference number: 5 (lower is better)
Translates to: APCSSKARLLSLHQTGHGRPFLS*PMRAGC
Trigger: ACACCCAGCCCTCATTGGCAAGGACAAGAAGGGTCG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCAGGGCAGTGGGTACTaGCGCAGAGCCAGCCCCATG +
Preference number: 5 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGQGSGY*RRASPM
Trigger: CATGGGGCTGGCTCTGCGCAAGTACCCACTGCCCTG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAGGGCCTCCTTGCGCTaGAACTTGGATTTGCTACCA +
Preference number: 5 (lower is better)
Translates to: PDRELDQLHHWKPCSSWGRASLR*NLDLLP
Trigger: TGGTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCCT...CCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp TCCAGGGCCTGTGTGGCCCGATGTTGCTGCTGCTGCTGTTGCTGCTaGTGCTGTTGTTGTTGCTGCTGCTGTTGCTGCTGTTGTTGCTGC +
Preference number: 5 (lower is better)
Translates to: SRACVARCCCCCCCC*CCCCCCCCCCCCCC
Trigger: GCAGCAACAACAGCAGCAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACATCGGGCCACACAGGCCCTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp GAGTCAGCTCGGAAGCTGTTACCAAACACGGGGGTAGCCATGCTATaGATGGGAAACAGGGTGTCCCGGGCCCGCAGCTTCTTGGTGCTT +
Preference number: 5 (lower is better)
Translates to: ESARKLLPNTGVAML*MGNRVSRARSFLVL
Trigger: AAGCACCAAGAAGCTGCGGGCCCGGGACACCCTGTTTCCCATGCATAGCATGGCTACCCCCGTGTTTGGTAACAGCTTCCGAGCTGACTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp TGTATTTCAGCAGGTTCTTCATGGCCGAGACCTCATCTGGCGGAGTaGGCAGCTCCTGGGACAGGAGGGCTGCCTGCTGTAAGCCACTTC +
Preference number: 5 (lower is better)
Translates to: CISAGSSWPRPHLAE*AAPGTGGLPAVSHF
Trigger: GAAGTGGCTTACAGCAGGCAGCCCTCCTGTCCCAGGAGCTGCCCACTCCGCCAGATGAGGTCTCGGCCATGAAGAACCTGCTGAAATACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CTGCCCAGGCCCACGAACGGAGCCTTCTGGCCCACGACTAGGGCTTaGTTGCTGTATTTCAGCAGGTTCTTCATGGCCGAGACCTCATCT +
Preference number: 5 (lower is better)
Translates to: LPRPTNGAFWPTTRA*LLYFSRFFMAETSS
Trigger: AGATGAGGTCTCGGCCATGAAGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCGTGGGCCAGAAGGCTCCGTTCGTGGGCCTGGGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CGAGGAGGTCTCCAAATTTCAGTGCTTGTAACCCCTCGAGTGGGCTaGGGTCTTCTGCCTTCCCTGGTGGGAGTCCTCCCTCAACAGGAG +
Preference number: 5 (lower is better)
Translates to: RGGLQISVLVTPRVG*GLLPSLVGVLPQQE
Trigger: CTCCTGTTGAGGGAGGACTCCCACCAGGGAAGGCAGAAGACCCCAGCCCACTCGAGGGGTTACAAGCACTGAAATTTGGAGACCTCCTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CTCGTAGCTCAGCACACAGCAGACTTAGGCTTGCACGAACAGCCTTaGCTTTCTTGCTGTCACTTCTGGCAAGCTGGCCCCCGGGACGCA +
Preference number: 5 (lower is better)
Translates to: LVAQHTADLGLHEQP*LSCCHFWQAGPRDA
Trigger: TGCGTCCCGGGGGCCAGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAGCCTAAGTCTGCTGTGTGCTGAGCTACGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp AGTCCGGGTGGGACTGAAAAGGGTGTCTCTGCTGGTGGCGGTTCCTaGCTCTGTACGCAGGCCAGTTTTCACCTTGCCCTTGGCCTTCTT +
Preference number: 5 (lower is better)
Translates to: SPGGTEKGVSAGGGS*LCTQASFHLALGLL
Trigger: AAGAAGGCCAAGGGCAAGGTGAAAACTGGCCTGCGTACAGAGCCAGGAACCGCCACCAGCAGAGACACCCTTTTCAGTCCCACCCGGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACTGCCCTCTGCTCCCTaGCTAACTTTCTCTTTGCCC +
Preference number: 5 (lower is better)
Translates to: APCSSKARLLSLHQTGHGLPSAP*LTFSLP
Trigger: GGGCAAAGAGAAAGTTAGCAAGGGAGCAGAGGGCAG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTGGAAAGAGCGGCTCTaGTCAGCCAGGTGTCCCACA +
Preference number: 5 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGWKERL*SARCPT
Trigger: TGTGGGACACCTGGCTGACAAGAGCCGCTCTTTCCA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCACATAGTTTTGGGGTCTaGGAGGTCAGAGGAGTGCAC +
Preference number: 5 (lower is better)
Translates to: RELDQLHHWKPCSSWGKAHSFGV*EVRGVH
Trigger: GTGCACTCCTCTGACCTCCAAGACCCCAAAACTATG...TGCCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACAGGGAGGAACGTCCTaGGGGGCTCAGGCCGAGTCC +
Preference number: 5 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGQGGTS*GAQAES
Trigger: GGACTCGGCCTGAGCCCCCAAGGACGTTCCTCCCTG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTACAGGAGGGGGTAGATaGGCAAGGTCCTGGGTGGCA +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGTGGGR*ARSWVA
Trigger: TGCCACCCAGGACCTTGCCAATCTACCCCCTCCTGT...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGCGAGCCAGCTCCCGTaGCTTCTCCTTGTAGCGCCT +
Preference number: 5 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGASQLP*LLLVAP
Trigger: AGGCGCTACAAGGAGAAGCAACGGGAGCTGGCTCGC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGAGTGAGCTTGAGTGTTaGCGCTTTCTTGGCCTGCCA +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRSELEC*RFLGLP
Trigger: TGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCTTCAGCTGGGCCACCTaGTGGGCCACCGAGGATGGC +
Preference number: 5 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSFSWAT*WATEDG
Trigger: GCCATCCTCGGTGGCCCACAAGGTGGCCCAGCTGAA...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGAGGTTGGGCTTGGAATTaGTGCATCTCCCTGCCACTG +
Preference number: 5 (lower is better)
Translates to: APCSSKARLLSLHQTGHGGWAWN*CISLPL
Trigger: CAGTGGCAGGGAGATGCACAAATTCCAAGCCCAACC...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCGCTCACTGGCAAGTTaGCTGCCCTCCTCTCGGCAG +
Preference number: 5 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGRSLAS*LPSSRQ
Trigger: CTGCCGAGAGGAGGGCAGCAAACTTGCCAGTGAGCG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTTTCCCAGGATGGCCTaGGCGTTGCGGGCTGACAGA +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGFPRMA*ALRADR
Trigger: TCTGTCAGCCCGCAACGCCAAGGCCATCCTGGGAAA...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGCCCCCGTGGGGGACTaGGCACCTGAGGTTAGGAGG +
Preference number: 5 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGAPVGD*APEVRR
Trigger: CCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGGC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGAGGGCCTCCTTGCGCTaGAACTTGGATTTGCTACCA +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRRASLR*NLDLLP
Trigger: TGGTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCCT...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGCTCCGAGAAAGCTCTTaGGCTTTGGAGAAGCTCAGG +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRLRESS*ALEKLR
Trigger: CCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGAG...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp GAGAAAGCTCTTTGGCTTTGGAGAAGCTCAGGGCCTCCTTGCGCTTaGACTTGGATTTGCTACCACTGGGGCTGGCCCCTGCACCTGCAC +
Preference number: 5 (lower is better)
Translates to: EKALWLWRSSGPPCA*TWICYHWGWPLHLH
Trigger: GTGCAGGTGCAGGGGCCAGCCCCAGTGGTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp TGTAGCTCCAGGGCCTGTGTGGCCCGATGTTGCTGCTGCTGCTGTTaGTGCTGCTGCTGTTGTTGTTGCTGCTGCTGTTGCTGCTGTTGT +
Preference number: 5 (lower is better)
Translates to: CSSRACVARCCCCCC*CCCCCCCCCCCCCC
Trigger: ACAACAGCAGCAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACATCGGGCCACACAGGCCCTGGAGCTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp CCGAGGAGACGGACTGCAGGCCAGTGTAAGGACTCTTTCCCAGTTTaGTTCGCTTCCTTGGGGGCTCATCACCTCGTAGCTCAGCACACA +
Preference number: 5 (lower is better)
Translates to: PRRRTAGQCKDSFPV*FASLGAHHLVAQHT
Trigger: TGTGTGCTGAGCTACGAGGTGATGAGCCCCCAAGGAAGCGAAGCAAACTGGGAAAGAGTCCTTACACTGGCCTGCAGTCCGTCTCCTCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 90 bp AGGAAGGCTGAGATCTTTGGCCGGTTTTCTACGGAGGGCAGCCGTTaGCTCCGAGAAAGCTCTTTGGCTTTGGAGAAGCTCAGGGCCTCC +
Preference number: 5 (lower is better)
Translates to: RKAEIFGRFSTEGSR*LRESSLALEKLRAS
Trigger: GGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGAGGCAACGGCTGCCCTCCGTAGAAAACCGGCCAAAGATCTCAGCCTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGCTGGCCAGGGAGGCCTaGCCCATGTCTCCATTGAGT +
Preference number: 5 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLLAREA*PMSPLS
Trigger: ACTCAATGGAGACATGGGCAAGGCCTCCCTGGCCAG...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCAGGTCCCGGGAGACTTaGTCCTGCAGAGGGCAGAGC +
Preference number: 5 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSRSRET*SCRGQS
Trigger: GCTCTGCCCTCTGCAGGACAAAGTCTCCCGGGACCT...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTGGAAAGAGCGGCTCTaGTCAGCCAGGTGTCCCACA +
Preference number: 5 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRWKERL*SARCPT
Trigger: TGTGGGACACCTGGCTGACAAGAGCCGCTCTTTCCA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCTGTGTGGCCCGATGTaGCTGCTGCTGCTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWLCGPM*LLLLLL
Trigger: CAGCAACAGCAGCAGCAGCAACATCGGGCCACACAG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACATAGTTTTGGGGTCTaGGAGGTCAGAGGAGTGCAC +
Preference number: 5 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTHSFGV*EVRGVH
Trigger: GTGCACTCCTCTGACCTCCAAGACCCCAAAACTATG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TGGTGGGACAGCCAGGAACGGGCACCCTTGGTGTTCCTGTGGACCACCAAGAGGGTGGTTTGCATAGTTTaGGGGTCTTGGAGGTCAGAG +
Preference number: 5 (lower is better)
Translates to: WWDSQERAPLVFLWTTKRVVCIV*GSWRSE
Trigger: CTCTGACCTCCAAGACCCCAAAACTATGCAAACCAC...CCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACAGGGAGGAACGTCCTaGGGGGCTCAGGCCGAGTCC +
Preference number: 5 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIQGGTS*GAQAES
Trigger: GGACTCGGCCTGAGCCCCCAAGGACGTTCCTCCCTG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTGTGGACCTTCACGCTaGTCCAGGGCAGCTGGGCTC +
Preference number: 5 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHCGPSR*SRAAGL
Trigger: GAGCCCAGCTGCCCTGGACAAGCGTGAAGGTCCACA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGAGATACGTGGCTGTTGCCATACTCCTGGGCTGTAGAGTGGGGCAGGCCGGTACCAGGTGTCCTTGCGTaGCAGGATTTGCATTCTGGG +
Preference number: 5 (lower is better)
Translates to: RDTWLLPYSWAVEWGRPVPGVLA*QDLHSG
Trigger: CCCAGAATGCAAATCCTGCAACGCAAGGACACCTGG...TACCGGCCTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACAAGTGAGCTTGAGTGTTaGCGCTTTCTTGGCCTGCCA +
Preference number: 5 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTSELEC*RFLGLP
Trigger: TGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACT...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGTTGCGGGTGGCTCTCTaGAGGCGCTCACTGGCAAGT +
Preference number: 5 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWLRVAL*RRSLAS
Trigger: ACTTGCCAGTGAGCGCCTCAAGAGAGCCACCCGCAA...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACTTTCCCAGGATGGCCTaGGCGTTGCGGGCTGACAGA +
Preference number: 5 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDFPRMA*ALRADR
Trigger: TCTGTCAGCCCGCAACGCCAAGGCCATCCTGGGAAA...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGCCCCCGTGGGGGACTaGGCACCTGAGGTTAGGAGG +
Preference number: 5 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPAPVGD*APEVRR
Trigger: CCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGGC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCAGGGCAGTGGGTACTaGCGCAGAGCCAGCCCCATG +
Preference number: 5 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAQGSGY*RRASPM
Trigger: CATGGGGCTGGCTCTGCGCAAGTACCCACTGCCCTG...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACACTCCGAGAAAGCTCTTaGGCTTTGGAGAAGCTCAGG +
Preference number: 5 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLRESS*ALEKLR
Trigger: CCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGAG...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGGGAAGGCTGAGATCTTaGGCCGGTTTTCTACGGAGG +
Preference number: 5 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGGRLRS*AGFLRR
Trigger: CCTCCGTAGAAAACCGGCCAAAGATCTCAGCCTTCC...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TACTTGCTCCGGGGCTCCTGGGTACTGGGGTTCCGGGCAGCCTTTCTAGTGACATTGCCCATGTCTCCATaGAGTACCTTGGTGTTGAGC +
Preference number: 5 (lower is better)
Translates to: YLLRGSWVLGFRAAFLVTLPMSP*STLVLS
Trigger: GCTCAACACCAAGGTACTCAATGGAGACATGGGCAA...TGTCACTAGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCAGTGCATAGAGCTCTaGCTGCCGAAGCAGCTGGGA +
Preference number: 5 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWQCIEL*LPKQLG
Trigger: TCCCAGCTGCTTCGGCAGCAAGAGCTCTATGCACTG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGTGGCCCTCCTCACTCTaGTCCATGGTACTAGGCACC +
Preference number: 5 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWWPSSL*SMVLGT
Trigger: GGTGCCTAGTACCATGGACAAGAGTGAGGAGGGCCA...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTGTGGACCTTCACGCTaGTCCAGGGCAGCTGGGCTC +
Preference number: 5 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLACGPSR*SRAAGL
Trigger: GAGCCCAGCTGCCCTGGACAAGCGTGAAGGTCCACA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGCCAGGTGTCCTTGCGTaGCAGGATTTGCATTCTGGG +
Preference number: 5 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRPGVLA*QDLHSG
Trigger: CCCAGAATGCAAATCCTGCAACGCAAGGACACCTGG...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATTCAGCTGGGCCACCTaGTGGGCCACCGAGGATGGC +
Preference number: 5 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIFSWAT*WATEDG
Trigger: GCCATCCTCGGTGGCCCACAAGGTGGCCCAGCTGAA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGGCAGCCCCTTGCTCTaGACCTTTGGCTTCAGCTGG +
Preference number: 5 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSGSPLL*TFGFSW
Trigger: CCAGCTGAAGCCAAAGGTCAAGAGCAAGGGGCTGCC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGGCGCCCGCTCCAGCTaGGCTCCCACCTTGGTCTTT +
Preference number: 5 (lower is better)
Translates to: RESIWWGKGVHLSGENVLGARSS*APTLVF
Trigger: AAAGACCAAGGTGGGAGCCAAGCTGGAGCGGGCGCC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTCTGTACACTGGATCTaGAAGTCCGGAGGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGSVHWI*KSGGSS
Trigger: GCTGCTGCCTCCGGACTTCAAGATCCAGTGTACAGA...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTTCATTGGCTGCTTTTTaGGTCCTCCGGCAGCTGCTG +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGSLAAF*VLRQLL
Trigger: CAGCAGCTGCCGGAGGACCAAAAAAGCAGCCAATGA...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGACTCATGAGCAGGGCCTaGCAGTTTTTGTTTTTGGGG +
Preference number: 5 (lower is better)
Translates to: APCSSKARLLSLHQTGHGLMSRA*QFLFLG
Trigger: CCCCAAAAACAAAAACTGCAAGGCCCTGCTCATGAG...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTGGCGCCCGACCCTTCTaGTCCTTGCCAATGAGGGCT +
Preference number: 5 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAGARPF*SLPMRA
Trigger: AGCCCTCATTGGCAAGGACAAGAAGGGTCGGGCGCC...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGAAGCTCAGGGCCTCCTaGCGCTTGAACTTGGATTTG +
Preference number: 5 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGKLRAS*RLNLDL
Trigger: CAAATCCAAGTTCAAGCGCAAGGAGGCCCTGAGCTT...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTGAAAGCTCTTTGGCTTaGGAGAAGCTCAGGGCCTCC +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGESSLA*EKLRAS
Trigger: GGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTTC...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 90 bp CTTCCCACCCAGTGGGTCTTGGTGATTGGACCGGGCACAGTCCTGTaGAGTGGGCAACTCAAAGTAGCCACTTTTGTCCAGACCGCCTTT +
Preference number: 5 (lower is better)
Translates to: LPTQWVLVIGPGTVL*SGQLKVATFVQTAF
Trigger: AAAGGCGGTCTGGACAAAAGTGGCTACTTTGAGTTGCCCACTTCACAGGACTGTGCCCGGTCCAATCACCAAGACCCACTGGGTGGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp CACCCAGTGGGTCTTGGTGATTGGACCGGGCACAGTCCTGTGAAGTaGGCAACTCAAAGTAGCCACTTTTGTCCAGACCGCCTTTGGGAA +
Preference number: 5 (lower is better)
Translates to: HPVGLGDWTGHSPVK*ATQSSHFCPDRLWE
Trigger: TTCCCAAAGGCGGTCTGGACAAAAGTGGCTACTTTGAGTTGCCCACTTCACAGGACTGTGCCCGGTCCAATCACCAAGACCCACTGGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp AGCTATAAGATGAGTCCTCATTGTCTGAGGAACAGAGGCTGGACGTaGACACGGAGCCTGAGGAAGAAGACGTGGACGAGCCAGAGGAGG +
Preference number: 5 (lower is better)
Translates to: SYKMSPHCLRNRGWT*TRSLRKKTWTSQRR
Trigger: CCTCCTCTGGCTCGTCCACGTCTTCTTCCTCAGGCTCCGTGTCCACGTCCAGCCTCTGTTCCTCAGACAATGAGGACTCATCTTATAGCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATTGCCCATGTCTCCATaGAGTACCTTGGTGTTGAGC +
Preference number: 5 (lower is better)
Translates to: GGCIFAQTSSWLADLLAALPMSP*STLVLS
Trigger: GCTCAACACCAAGGTACTCAATGGAGACATGGGCAA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACTGGCCAGGGAGGCCTaGCCCATGTCTCCATTGAGT +
Preference number: 5 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGLAREA*PMSPLS
Trigger: ACTCAATGGAGACATGGGCAAGGCCTCCCTGGCCAG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGACAGGCCTCTGCTACTaGGAAAGAGCGGCTCTTGTC +
Preference number: 5 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGTGLCY*ERAALV
Trigger: GACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTGT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGGCAGGGGCCTCTTTGTaGGCCACTTTGTCTAAAGTG +
Preference number: 5 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRAGASL*ATLSKV
Trigger: CACTTTAGACAAAGTGGCCAACAAAGAGGCCCCTGC...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATACTCCAGGGCAGCTGCTaGAAGGGTGGATCCGGGCAA +
Preference number: 5 (lower is better)
Translates to: VLGVRMCVQEARRDPCCILQGSC*KGGSGQ
Trigger: TTGCCCGGATCCACCCTTCAAGCAGCTGCCCTGGAG...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGTTAAGGCAACTGGCTaGTGGGTGGACTTTGGGGTC +
Preference number: 5 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGVKATG*WVDFGV
Trigger: GACCCCAAAGTCCACCCACAAGCCAGTTGCCTTAAC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGCGAGCCAGCTCCCGTaGCTTCTCCTTGTAGCGCCT +
Preference number: 5 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPASQLP*LLLVAP
Trigger: AGGCGCTACAAGGAGAAGCAACGGGAGCTGGCTCGC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGGGGCAGGCAGTGAGCTaGAGTGTTTGCGCTTTCTTG +
Preference number: 5 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLGQAVS*SVCAFL
Trigger: CAAGAAAGCGCAAACACTCAAGCTCACTGCCTGCCC...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGGGTTGGGCTTGGAATTaGTGCATCTCCCTGCCACTG +
Preference number: 5 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGGWAWN*CISLPL
Trigger: CAGTGGCAGGGAGATGCACAAATTCCAAGCCCAACC...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTGTTTTCACCTTGCCCTaGGCCTTCTTCTTGCCTGGT +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGVFTLP*AFFLPG
Trigger: ACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAAC...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTAGGCCAGTTTTCACCTaGCCCTTGGCCTTCTTCTTG +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGRPVFT*PLAFFL
Trigger: CAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCCT...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCGCTCACTGGCAAGTTaGCTGCCCTCCTCTCGGCAG +
Preference number: 5 (lower is better)
Translates to: RESIWWGKGVHLSGENVLRSLAS*LPSSRQ
Trigger: CTGCCGAGAGGAGGGCAGCAAACTTGCCAGTGAGCG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATTGCGGGTGGCTCTCTaGAGGCGCTCACTGGCAAGT +
Preference number: 5 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGLRVAL*RRSLAS
Trigger: ACTTGCCAGTGAGCGCCTCAAGAGAGCCACCCGCAA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTTTCCCAGGATGGCCTaGGCGTTGCGGGCTGACAGA +
Preference number: 5 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLAFPRMA*ALRADR
Trigger: TCTGTCAGCCCGCAACGCCAAGGCCATCCTGGGAAA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCATTGGCCCTAAGCAGCTaGTGGGCTCCTCCGGGAAGG +
Preference number: 5 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPLALSS*WAPPGR
Trigger: CCTTCCCGGAGGAGCCCACAAGCTGCTTAGGGCCAA...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGGCGCCCGACCCTTCTaGTCCTTGCCAATGAGGGCT +
Preference number: 5 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPGARPF*SLPMRA
Trigger: AGCCCTCATTGGCAAGGACAAGAAGGGTCGGGCGCC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCACCCTGCTCGAGCAAGGCCAGGCTTCTCTCCCTGCATCAAACTGGCCATGGATTGCTAACTTTCTCTTaGCCCACCTCTTTACCCATG +
Preference number: 5 (lower is better)
Translates to: APCSSKARLLSLHQTGHGLLTFS*PTSLPM
Trigger: CATGGGTAAAGAGGTGGGCAAAGAGAAAGTTAGCAA...TCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCTGCCCTCTGCTCCCTaGCTAACTTTCTCTTTGCCC +
Preference number: 5 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSLPSAP*LTFSLP
Trigger: GGGCAAAGAGAAAGTTAGCAAGGGAGCAGAGGGCAG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCACAGGCCTCTGCTACTaGGAAAGAGCGGCTCTTGTC +
Preference number: 5 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSTGLCY*ERAALV
Trigger: GACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTGT...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCCAGCAGGGGCCTCTTaGTTGGCCACTTTGTCTAAA +
Preference number: 5 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWPAGAS*LATLSK
Trigger: TTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTGG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCCAGCAGGGGCCTCTTaGTTGGCCACTTTGTCTAAA +
Preference number: 5 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGPAGAS*LATLSK
Trigger: TTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTGG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCACTGTGTGGCCCGATGTaGCTGCTGCTGCTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPLCGPM*LLLLLL
Trigger: CAGCAACAGCAGCAGCAGCAACATCGGGCCACACAG...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGTTAAGGCAACTGGCTaGTGGGTGGACTTTGGGGTC +
Preference number: 5 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHVKATG*WVDFGV
Trigger: GACCCCAAAGTCCACCCACAAGCCAGTTGCCTTAAC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATGGCCCTCCTCACTCTaGTCCATGGTACTAGGCACC +
Preference number: 5 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGWPSSL*SMVLGT
Trigger: GGTGCCTAGTACCATGGACAAGAGTGAGGAGGGCCA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCACAGGAGGGGGTAGATaGGCAAGGTCCTGGGTGGCA +
Preference number: 5 (lower is better)
Translates to: RESIWWGKGVHLSGENVLTGGGR*ARSWVA
Trigger: TGCCACCCAGGACCTTGCCAATCTACCCCCTCCTGT...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCCTTGCGTTGCAGGATTaGCATTCTGGGGGTGAGCCT +
Preference number: 5 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSLALQD*HSGGEP
Trigger: AGGCTCACCCCCAGAATGCAAATCCTGCAACGCAAG...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGAGTGAGCTTGAGTGTTaGCGCTTTCTTGGCCTGCCA +
Preference number: 5 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLSELEC*RFLGLP
Trigger: TGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACT...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGGCAGGCAGTGAGCTaGAGTGTTTGCGCTTTCTTG +
Preference number: 5 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHGQAVS*SVCAFL
Trigger: CAAGAAAGCGCAAACACTCAAGCTCACTGCCTGCCC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACAGGCCAGTTTTCACCTaGCCCTTGGCCTTCTTCTTG +
Preference number: 5 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDRPVFT*PLAFFL
Trigger: CAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCCT...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGAAGCTCAGGGCCTCCTaGCGCTTGAACTTGGATTTG +
Preference number: 5 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGKLRAS*RLNLDL
Trigger: CAAATCCAAGTTCAAGCGCAAGGAGGCCCTGAGCTT...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCTCCGAGAAAGCTCTTaGGCTTTGGAGAAGCTCAGG +
Preference number: 5 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWLRESS*ALEKLR
Trigger: CCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGAG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGGCTATCCGGAAGGCTGAGATCTTaGGCCGGTTTTCTACGGAGG +
Preference number: 5 (lower is better)
Translates to: SPFYCCDSRTSGSASWLSGRLRS*AGFLRR
Trigger: CCTCCGTAGAAAACCGGCCAAAGATCTCAGCCTTCC...GGATAGCCATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATGCAGGGGCCTCTTTGTaGGCCACTTTGTCTAAAGTG +
Preference number: 5 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHAGASL*ATLSKV
Trigger: CACTTTAGACAAAGTGGCCAACAAAGAGGCCCCTGC...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCACAGTGCATAGAGCTCTaGCTGCCGAAGCAGCTGGGA +
Preference number: 5 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPQCIEL*LPKQLG
Trigger: TCCCAGCTGCTTCGGCAGCAAGAGCTCTATGCACTG...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp TATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTACAGTCCTCTCATTTaGCATCCCTCCCTGAGTAGA +
Preference number: 5 (lower is better)
Translates to: YGLDSNLSRTAVQRQSSRYSPLI*HPSLSR
Trigger: TCTACTCAGGGAGGGATGCAAAATGAGAGGACTGTA...CCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGACCAGGTGTCCTTGCGTaGCAGGATTTGCATTCTGGG +
Preference number: 5 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGPGVLA*QDLHSG
Trigger: CCCAGAATGCAAATCCTGCAACGCAAGGACACCTGG...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGAGGGCAGGCAGTGAGCTaGAGTGTTTGCGCTTTCTTG +
Preference number: 5 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGGQAVS*SVCAFL
Trigger: CAAGAAAGCGCAAACACTCAAGCTCACTGCCTGCCC...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGCTTGCACGAACAGCCTaGGCTTTCTTGCTGTCACTT +
Preference number: 5 (lower is better)
Translates to: GEHGCHKAFLRTKAFGPWLARTA*AFLLSL
Trigger: AAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAG...CCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACCTTGCACGAACAGCCTaGGCTTTCTTGCTGTCACTT +
Preference number: 5 (lower is better)
Translates to: LPDSLAVSRTLVVISSDDLARTA*AFLLSL
Trigger: AAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAG...GTCATCAGAAGAGATGACCACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACATTCAGCTGGGCCACCTaGTGGGCCACCGAGGATGGC +
Preference number: 5 (lower is better)
Translates to: VISSDDHQGWNIALMWRTFSWAT*WATEDG
Trigger: GCCATCCTCGGTGGCCCACAAGGTGGCCCAGCTGAA...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CACAGTTGGGGAGGAGGAGTCACGCCATTTGCGTGTACACACAGAAAGAAAGGATCATTGGCTGCTTTTTaGGTCCTCCGGCAGCTGCTG +
Preference number: 5 (lower is better)
Translates to: HSWGGGVTPFACTHRKKGSLAAF*VLRQLL
Trigger: CAGCAGCTGCCGGAGGACCAAAAAAGCAGCCAATGA...TCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGTTCTTGGTGCTTCCGTaGAGCTGGAAGAGGTTCTGT +
Preference number: 5 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGFLVLP*SWKRFC
Trigger: ACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGAA...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GCTCTTTCCATCATGGGAGAAGTGAGGACTGCCTGGCTTTCCTGGTACTTGGGGCTCATGAGCAGGGCCTaGCAGTTTTTGTTTTTGGGG +
Preference number: 5 (lower is better)
Translates to: ALSIMGEVRTAWLSWYLGLMSRA*QFLFLG
Trigger: CCCCAAAAACAAAAACTGCAAGGCCCTGCTCATGAG...CCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATGGAAAGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCGACCCTTCTTGTCCTaGCCAATGAGGGCTGGGTGT +
Preference number: 5 (lower is better)
Translates to: RESIWWGKGVHLSGENVLRPFLS*PMRAGC
Trigger: ACACCCAGCCCTCATTGGCAAGGACAAGAAGGGTCG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCATCCATAGAAACGATGTaGCCCATAGAGAACATTGCT +
Preference number: 5 (lower is better)
Translates to: GGCIFAQTSSWLADLLAASIETM*PIENIA
Trigger: AGCAATGTTCTCTATGGGCAACATCGTTTCTATGGA...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCACACTTGAGGCTATCCAGAGGTGGTGGGACCCCAGGGAAAGTATCTGGTGGGTCCATAGAAACGATGTaGCCCATAGAGAACATTGCT +
Preference number: 5 (lower is better)
Translates to: PHLRLSRGGGTPGKVSGGSIETM*PIENIA
Trigger: AGCAATGTTCTCTATGGGCAACATCGTTTCTATGGA...CCCACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACACAAGAGGTGAGGTGTTaGGGGCGGCCCTCACAGGAC +
Preference number: 5 (lower is better)
Translates to: VISSDDHQGWNIALMWRTQEVRC*GRPSQD
Trigger: GTCCTGTGAGGGCCGCCCCAAACACCTCACCTCTTG...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GAGCAGCATCGCCTTTCTACTGTTGTGACTCCAGAACCTCTGGCTCAGCCTCATTTGCCCATGTCTCCATaGAGTACCTTGGTGTTGAGC +
Preference number: 5 (lower is better)
Translates to: EQHRLSTVVTPEPLAQPHLPMSP*STLVLS
Trigger: GCTCAACACCAAGGTACTCAATGGAGACATGGGCAA...ATGAGGCTGAGCCAGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCACAGGCCTCTGCTACTaGGAAAGAGCGGCTCTTGTC +
Preference number: 5 (lower is better)
Translates to: RESIWWGKGVHLSGENVLTGLCY*ERAALV
Trigger: GACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTGT...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAATGGTACTAGGCACCTaGGAGCCAGGCCCTGGGCTG +
Preference number: 5 (lower is better)
Translates to: VISSDDHQGWNIALMWRTMVLGT*EPGPGL
Trigger: CAGCCCAGGGCCTGGCTCCAAGGTGCCTAGTACCAT...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CCTGGTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTACAGTCCTCTCATTTaGCATCCCTCCCTGAGTAGA +
Preference number: 5 (lower is better)
Translates to: PGTWGQDVCTRGQKGPLLYSPLI*HPSLSR
Trigger: TCTACTCAGGGAGGGATGCAAAATGAGAGGACTGTA...CAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTACAGCCTTGGCTTTCTaGCTGTCACTTCTGGCAAGC +
Preference number: 5 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLATALAF*LSLLAS
Trigger: GCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGT...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCGGTTGGGCTTGGAATTaGTGCATCTCCCTGCCACTG +
Preference number: 5 (lower is better)
Translates to: RESIWWGKGVHLSGENVLGWAWN*CISLPL
Trigger: CAGTGGCAGGGAGATGCACAAATTCCAAGCCCAACC...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCACAGCCACTGCGGGTaGGGCTTGGAATTTGTGCAT +
Preference number: 5 (lower is better)
Translates to: RESIWWGKGVHLSGENVLHSHCG*GLEFVH
Trigger: ATGCACAAATTCCAAGCCCAACCCGCAGTGGCTGTG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTAGGCCAGTTTTCACCTaGCCCTTGGCCTTCTTCTTG +
Preference number: 5 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLARPVFT*PLAFFL
Trigger: CAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCCT...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 90 bp GCTGTACACCGGCTTCTTCCTCTTCTTCTTCCTCATCCGAGAAGCTaGTGTCATCCTCGTCAAACTCAAAGTCATCCTCCACAGCAAAGC +
Preference number: 5 (lower is better)
Translates to: AVHRLLPLLLPHPRS*CHPRQTQSHPPQQS
Trigger: GCTTTGCTGTGGAGGATGACTTTGAGTTTGACGAGGATGACACCAGCTTCTCGGATGAGGAAGAAGAAGAGGAAGAAGCCGGTGTACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCCAGCAGGGGCCTCTTaGTTGGCCACTTTGTCTAAA +
Preference number: 5 (lower is better)
Translates to: RESIWWGKGVHLSGENVLPAGAS*LATLSK
Trigger: TTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTGG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACACTGTGTGGCCCGATGTaGCTGCTGCTGCTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: VISSDDHQGWNIALMWRTLCGPM*LLLLLL
Trigger: CAGCAACAGCAGCAGCAGCAACATCGGGCCACACAG...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGCCAGGTGCTGCAGGTaGAAGGCCAGCACATCCTCA +
Preference number: 5 (lower is better)
Translates to: VISSDDHQGWNIALMWRTARCCR*KASTSS
Trigger: TGAGGATGTGCTGGCCTTCAACCTGCAGCACCTGGC...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTGGACCAGTTTTCACCTTGCCCTaGGCCTTCTTCTTGCCTGGT +
Preference number: 5 (lower is better)
Translates to: GKGVHLSGENVLMQNCGPVFTLP*AFFLPG
Trigger: ACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAAC...TGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCAGGGCCTCCTTGCGCTaGAACTTGGATTTGCTACCA +
Preference number: 5 (lower is better)
Translates to: RESIWWGKGVHLSGENVLRASLR*NLDLLP
Trigger: TGGTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCCT...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGGGGTTGCATATTTGCTCAGACCAGCTCCTGGCTGGCTGACCTCTTGGCTGCAGTAGAAGTTATCTTTTaGGGTTCCATAGAAACGATG +
Preference number: 5 (lower is better)
Translates to: GGCIFAQTSSWLADLLAAVEVIF*GSIETM
Trigger: CATCGTTTCTATGGAACCCAAAAAGATAACTTCTAC...TGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACATGGCCCTCCTCACTCTaGTCCATGGTACTAGGCACC +
Preference number: 5 (lower is better)
Translates to: VISSDDHQGWNIALMWRTWPSSL*SMVLGT
Trigger: GGTGCCTAGTACCATGGACAAGAGTGAGGAGGGCCA...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATAGTGGTTTGCATAGTTTaGGGGTCTTGGAGGTCAGAG +
Preference number: 5 (lower is better)
Translates to: VLGVRMCVQEARRDPCCIVVCIV*GSWRSE
Trigger: CTCTGACCTCCAAGACCCCAAAACTATGCAAACCAC...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCTTGCACGAACAGCCTaGGCTTTCTTGCTGTCACTT +
Preference number: 5 (lower is better)
Translates to: RESIWWGKGVHLSGENVLLARTA*AFLLSL
Trigger: AAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGCCCCCGTGGGGGACTaGGCACCTGAGGTTAGGAGG +
Preference number: 5 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVAPVGD*APEVRR
Trigger: CCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGGC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp AGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCCTCATGAGCAGGGCCTaGCAGTTTTTGTTTTTGGGG +
Preference number: 5 (lower is better)
Translates to: RESIWWGKGVHLSGENVLLMSRA*QFLFLG
Trigger: CCCCAAAAACAAAAACTGCAAGGCCCTGCTCATGAG...GAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCCACCAGATACTTTCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp ATGGCTTGGATTCTAATCTCTCGAGAACTGCGGTGCAGCGGCAGAGCAGCCGGTGTAGAAGTTATCTTTTaGGGTTCCATAGAAACGATG +
Preference number: 5 (lower is better)
Translates to: MAWILISRELRCSGRAAGVEVIF*GSIETM
Trigger: CATCGTTTCTATGGAACCCAAAAAGATAACTTCTAC...ACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGATTAGAATCCAAGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTTTGCTAACTTTCTCTTaGCCCACCTCTTTACCCATG +
Preference number: 5 (lower is better)
Translates to: GRRNAEKVAHRTTAFLLALLTFS*PTSLPM
Trigger: CATGGGTAAAGAGGTGGGCAAAGAGAAAGTTAGCAA...AGCAAGTAGAAAGGCTGTTGTCCTGTGTGCTACCTTCTCCGCGTTTCTTCTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGGTCGCCGCTCGCCCTaGCCCTCAGCTTTTAGGTGG +
Preference number: 5 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVGRRSP*PSAFRW
Trigger: CCACCTAAAAGCTGAGGGCAAGGGCGAGCGGCGACC...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACACTTGCGTTGCAGGATTaGCATTCTGGGGGTGAGCCT +
Preference number: 5 (lower is better)
Translates to: VISSDDHQGWNIALMWRTLALQD*HSGGEP
Trigger: AGGCTCACCCCCAGAATGCAAATCCTGCAACGCAAG...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACATCATTGGCTGCTTTTTaGGTCCTCCGGCAGCTGCTG +
Preference number: 5 (lower is better)
Translates to: VISSDDHQGWNIALMWRTSLAAF*VLRQLL
Trigger: CAGCAGCTGCCGGAGGACCAAAAAAGCAGCCAATGA...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GTACTTGGGGTCAGGATGTGTGTACAAGAGGCCAGAAGGGACCCTTGTTGTATATTGCTAACTTTCTCTTaGCCCACCTCTTTACCCATG +
Preference number: 5 (lower is better)
Translates to: VLGVRMCVQEARRDPCCILLTFS*PTSLPM
Trigger: CATGGGTAAAGAGGTGGGCAAAGAGAAAGTTAGCAA...TATACAACAAGGGTCCCTTCTGGCCTCTTGTACACACATCCTGACCCCAAGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTAGGTCCCGGGAGACTTaGTCCTGCAGAGGGCAGAGC +
Preference number: 5 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVRSRET*SCRGQS
Trigger: GCTCTGCCCTCTGCAGGACAAAGTCTCCCGGGACCT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTCAGCAGGGTGATAGCTaGACCAGGCCTGCAGTGGCG +
Preference number: 5 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVQQGDS*TRPAVA
Trigger: CGCCACTGCAGGCCTGGTCAAGCTATCACCCTGCTG...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTATGGTACTAGGCACCTaGGAGCCAGGCCCTGGGCTG +
Preference number: 5 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVMVLGT*EPGPGL
Trigger: CAGCCCAGGGCCTGGCTCCAAGGTGCCTAGTACCAT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp GTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGTGGTTTGCATAGTTTaGGGGTCTTGGAGGTCAGAG +
Preference number: 5 (lower is better)
Translates to: VISSDDHQGWNIALMWRTVVCIV*GSWRSE
Trigger: CTCTGACCTCCAAGACCCCAAAACTATGCAAACCAC...TGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTGGAAAGAGCGGCTCTaGTCAGCCAGGTGTCCCACA +
Preference number: 5 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVWKERL*SARCPT
Trigger: TGTGGGACACCTGGCTGACAAGAGCCGCTCTTTCCA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTCTGTACACTGGATCTaGAAGTCCGGAGGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVSVHWI*KSGGSS
Trigger: GCTGCTGCCTCCGGACTTCAAGATCCAGTGTACAGA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTACAGCCTTGGCTTTCTaGCTGTCACTTCTGGCAAGC +
Preference number: 5 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVTALAF*LSLLAS
Trigger: GCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGT...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTTCTTGGTGCTTCCGTaGAGCTGGAAGAGGTTCTGT +
Preference number: 5 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVFLVLP*SWKRFC
Trigger: ACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGAA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS-3UTR CAA 90 bp CTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTTCCATAGAAACGATGTaGCCCATAGAGAACATTGCT +
Preference number: 5 (lower is better)
Translates to: LLVYTFTRFVLFTTLATVSIETM*PIENIA
Trigger: AGCAATGTTCTCTATGGGCAACATCGTTTCTATGGA...AACTGTGGCTAACGTGGTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp GGGAAGTACTTTCCGGGCTGGAAATGCGCGGCCGGTTaGGCGGCGGGGCCGGCGGGGGCGAGGCGCGCGGCG +
Preference number: 6 (lower is better)
Translates to: GKYFPGWKCAAG*AAGPAGARRAA
Trigger: CGCCGCGCGCCTCGCCCCCGCCGGCCCCGCCGCGCAACCGGCCGCGCATTTCCAGCCCGGAAAGTACTTCCC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GCCATCGGCAGCGGCGACGGGAAGTACTTTCCGGGCTaGAAATGCGCGGCCGGTTGCGCGGCGGGGCCGGCG +
Preference number: 6 (lower is better)
Translates to: AIGSGDGKYFPG*KCAAGCAAGPA
Trigger: CGCCGGCCCCGCCGCGCAACCGGCCGCGCATTTCCAGCCCGGAAAGTACTTCCCGTCGCCGCTGCCGATGGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp AGGCTGGCCCAGGCTCCACGGGGCCTGCCACCTCCTTaGCACAGCGTCCGGGTGCTGCCACACCTGTCCCAG +
Preference number: 6 (lower is better)
Translates to: RLAQAPRGLPPP*HSVRVLPHLSQ
Trigger: CTGGGACAGGTGTGGCAGCACCCGGACGCTGTGCCAAGGAGGTGGCAGGCCCCGTGGAGCCTGGGCCAGCCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GCCCACGGGTGGCTGCCTCACCTCCCCGTCTCCATGTaGGGCCTCATGCTCCCTGCTGCGGGCACAGTCGGG +
Preference number: 6 (lower is better)
Translates to: AHGWLPHLPVSM*GLMLPAAGTVG
Trigger: CCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCCCACATGGAGACGGGGAGGTGAGGCAGCCACCCGTGGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp CACTCACTGAAGGCTGGCCCAGGCTCCACGGGGCCTGCCACCTCCTaGGCACAGCGTCCGGGTGCTGCCACACCTGTCCCAGGCCTGCCC +
Preference number: 6 (lower is better)
Translates to: HSLKAGPGSTGPATS*AQRPGAATPVPGLP
Trigger: GGGCAGGCCTGGGACAGGTGTGGCAGCACCCGGACGCTGTGCCAAGGAGGTGGCAGGCCCCGTGGAGCCTGGGCCAGCCTTCAGTGAGTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 72 bp GCCGCCGCTGCCGCAGCCACCGCTTTCCGCTTGGTCTaGGCCACTGCTGACCAGCTCAGCAGGGGGCTGCCT +
Preference number: 6 (lower is better)
Translates to: AAAAAATAFRLV*ATADQLSRGLP
Trigger: AGGCAGCCCCCTGCTGAGCTGGTCAGCAGTGGCTCAGACCAAGCGGAAAGCGGTGGCTGCGGCAGCGGCGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp GAGCCACTGCTGACCAGCTCAGCAGGGGGCTGCCTCTaGGGCCTAGGAAGTGGTCTGAGGCCCCCGTGGGGG +
Preference number: 6 (lower is better)
Translates to: EPLLTSSAGGCL*GLGSGLRPPWG
Trigger: CCCCCACGGGGGCCTCAGACCACTTCCTAGGCCGCAGAGGCAGCCCCCTGCTGAGCTGGTCAGCAGTGGCTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GCACCAGCCACCCCAGCCCTGGACAGGAAGCAGCGCTaGGCGTGGGTGTGCGCGTGGGGGCTGCTACCCTTA +
Preference number: 6 (lower is better)
Translates to: APATPALDRKQR*AWVCAWGLLPL
Trigger: TAAGGGTAGCAGCCCCCACGCGCACACCCACGCCCAGCGCTGCTTCCTGTCCAGGGCTGGGGTGGCTGGTGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp GCAAGCTGGCCCCCGGGACGCAGGGCAGGCAGTGAGCTTGAGTGTTaGCGCTTTCTTGGCCTGCCAGGCCCCCGCCGTGCAGGGCTCCGT +
Preference number: 6 (lower is better)
Translates to: ASWPPGRRAGSELEC*RFLGLPGPRRAGLR
Trigger: ACGGAGCCCTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACTGCCTGCCCTGCGTCCCGGGGGCCAGCTTGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp CCCCGGGACGCAGGGCAGGCAGTGAGCTTGAGTGTTTGCGCTTTCTaGGCCTGCCAGGCCCCCGCCGTGCAGGGCTCCGTGAGCTCTCCT +
Preference number: 6 (lower is better)
Translates to: PRDAGQAVSLSVCAF*ACQAPAVQGSVSSP
Trigger: AGGAGAGCTCACGGAGCCCTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACTGCCTGCCCTGCGTCCCGGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 72 bp TCTTGGCCTGCCAGGCCCCCGCCGTGCAGGGCTCCGTaGGCTCTCCTCTCTCTCGTGGTCATGCCTGCGCTG +
Preference number: 6 (lower is better)
Translates to: SWPARPPPCRAP*ALLSLVVMPAL
Trigger: CAGCGCAGGCATGACCACGAGAGAGAGGAGAGCTCACGGAGCCCTGCACGGCGGGGGCCTGGCAGGCCAAGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CCCCGGGACGCAGGGCAGGCAGTGAGCTTGAGTGTTTaGGCTTTCTTGGCCTGCCAGGCCCCCGCCGTGCAG +
Preference number: 6 (lower is better)
Translates to: PRDAGQAVSLSV*AFLACQAPAVQ
Trigger: CTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACTGCCTGCCCTGCGTCCCGGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CGGGCAGTCCGTCCTGCAGGTCTTCCTTGTGGATGGTaGAGGACCGTGCCAGGGCGGCGCTCTGCTCTGCGC +
Preference number: 6 (lower is better)
Translates to: RAVRPAGLPCGW*RTVPGRRSALR
Trigger: GCGCAGAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATCCACAAGGAAGACCTGCAGGACGGACTGCCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GGGATCCTCGGTAGGCCGGCTCAGAGGGAGAGGATGTaGGGCCACTGGGGTGTGCCGACGCTGCTGAGCCCA +
Preference number: 6 (lower is better)
Translates to: GILGRPAQRERM*GHWGVPTLLSP
Trigger: TGGGCTCAGCAGCGTCGGCACACCCCAGTGGCCCCACATCCTCTCCCTCTGAGCCGGCCTACCGAGGATCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CCTGAACTGAGATACTCCAGGCCTTTCAGCCGGGGGTaGAGGGCCGCCTCAAAGCCCCCGGGTCGCCGCTCG +
Preference number: 6 (lower is better)
Translates to: PELRYSRPFSRG*RAASKPPGRRS
Trigger: CGAGCGGCGACCCGGGGGCTTTGAGGCGGCCCTCCACCCCCGGCTGAAAGGCCTGGAGTATCTCAGTTCAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CTGGACAGGAAGCAGCGCTGGGCGTGGGTGTGCGCGTaGGGGCTGCTACCCTTAGAGCGCAGGGCTTCGGGT +
Preference number: 6 (lower is better)
Translates to: LDRKQRWAWVCA*GLLPLERRASG
Trigger: ACCCGAAGCCCTGCGCTCTAAGGGTAGCAGCCCCCACGCGCACACCCACGCCCAGCGCTGCTTCCTGTCCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp CCCCCGGGACGCAGGGCAGGCAGTGAGCTTGAGTGTTaGCGCTTTCTTGGCCTGCCAGGCCCCCGCCGTGCA +
Preference number: 6 (lower is better)
Translates to: PPGRRAGSELEC*RFLGLPGPRRA
Trigger: TGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACTGCCTGCCCTGCGTCCCGGGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp CACTTCTGGCAAGCTGGCCCCCGGGACGCAGGGCAGGCAGTGAGCTaGAGTGTTTGCGCTTTCTTGGCCTGCCAGGCCCCCGCCGTGCAG +
Preference number: 6 (lower is better)
Translates to: HFWQAGPRDAGQAVS*SVCAFLACQAPAVQ
Trigger: CTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACTGCCTGCCCTGCGTCCCGGGGGCCAGCTTGCCAGAAGTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp GGTGTGGGGGCTTCGCTGGGCGGGTGGCCCTCATTGGCTGCTTTTTaGGTCCTCCGGCAGCTGCTGGACACCAACAGGGCTGGCGAGGGC +
Preference number: 6 (lower is better)
Translates to: GVGASLGGWPSLAAF*VLRQLLDTNRAGEG
Trigger: GCCCTCGCCAGCCCTGTTGGTGTCCAGCAGCTGCCGGAGGACCAAAAAAGCAGCCAATGAGGGCCACCCGCCCAGCGAAGCCCCCACACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp GCCCGCCGCCTCCCGGCCTTTTCTGCTTCAGCCCGTTCAGCCTTCTaGGCCCTAAGCAGCTTGTGGGCTCCTCCGGGAAGGCCTGCCCCA +
Preference number: 6 (lower is better)
Translates to: ARRLPAFSASARSAF*ALSSLWAPPGRPAP
Trigger: TGGGGCAGGCCTTCCCGGAGGAGCCCACAAGCTGCTTAGGGCCAAGAAGGCTGAACGGGCTGAAGCAGAAAAGGCCGGGAGGCGGCGGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GGACGGGCAGTCCGTCCTGCAGGTCTTCCTTGTGGATaGTGCAGGACCGTGCCAGGGCGGCGCTCTGCTCTG +
Preference number: 6 (lower is better)
Translates to: GRAVRPAGLPCG*CRTVPGRRSAL
Trigger: CAGAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATCCACAAGGAAGACCTGCAGGACGGACTGCCCGTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GCAGGGCAGGCAGTGAGCTTGAGTGTTTGCGCTTTCTaGGCCTGCCAGGCCCCCGCCGTGCAGGGCTCCGTG +
Preference number: 6 (lower is better)
Translates to: AGQAVSLSVCAF*ACQAPAVQGSV
Trigger: CACGGAGCCCTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACTGCCTGCCCTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp CTGCTGGTGGCGGTTCCTGGCTCTGTACGCAGGCCAGTTTTCACCTaGCCCTTGGCCTTCTTCTTGCCTGGTGCACCCGGGGGCCGCCGC +
Preference number: 6 (lower is better)
Translates to: LLVAVPGSVRRPVFT*PLAFFLPGAPGGRR
Trigger: GCGGCGGCCCCCGGGTGCACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCCTGCGTACAGAGCCAGGAACCGCCACCAGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp TCCTCCTTCGGGATCAGGACGGGCAGTCCGTCCTGCAGGTCTTCCTaGTGGATGGTGCAGGACCGTGCCAGGGCGGCGCTCTGCTCTGCG +
Preference number: 6 (lower is better)
Translates to: SSFGIRTGSPSCRSS*WMVQDRARAALCSA
Trigger: CGCAGAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATCCACAAGGAAGACCTGCAGGACGGACTGCCCGTCCTGATCCCGAAGGAGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp GGGCCTGGGCCCTTAGTGGCTGGAAACTTGGCTTCCTaGTGGACGCAGCTGGCTTTGAGGCTGCCCAGGCCC +
Preference number: 6 (lower is better)
Translates to: GPGPLVAGNLAS*WTQLALRLPRP
Trigger: GGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp TCACCTCCCCGTCTCCATGTGGGGCCTCATGCTCCCTaGTGCGGGCACAGTCGGGTCTTTCCACTGGGCCTG +
Preference number: 6 (lower is better)
Translates to: SPPRLHVGPHAP*CGHSRVFPLGL
Trigger: CAGGCCCAGTGGAAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCCCACATGGAGACGGGGAGGTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp GGCTGCCTCACCTCCCCGTCTCCATGTGGGGCCTCATaGTCCCTGCTGCGGGCACAGTCGGGTCTTTCCACT +
Preference number: 6 (lower is better)
Translates to: GCLTSPSPCGAS*SLLRAQSGLST
Trigger: AGTGGAAAGACCCGACTGTGCCCGCAGCAGGGAGCATGAGGCCCCACATGGAGACGGGGAGGTGAGGCAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp TCCGAGGGCAAGATGACCAACTGCGTGGCTGCATCTTaGGGGAGGGGGAACACGGAGGGCATGGAGCCGGGC +
Preference number: 6 (lower is better)
Translates to: SEGKMTNCVAAS*GRGNTEGMEPG
Trigger: GCCCGGCTCCATGCCCTCCGTGTTCCCCCTCCCCCAAGATGCAGCCACGCAGTTGGTCATCTTGCCCTCGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GCATCCAAGCCTGGCAGCGCTTTGGGTGGGTGGCTATaGTTGGGAGTCCCCCAGTCCACCTCCGAGTCCCCC +
Preference number: 6 (lower is better)
Translates to: ASKPGSALGGWL*LGVPQSTSESP
Trigger: GGGGGACTCGGAGGTGGACTGGGGGACTCCCAACCATAGCCACCCACCCAAAGCGCTGCCAGGCTTGGATGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CGGCAGAGGAGCCGTGCTAAGGGGCACGGAGGCTGCTaGGGTCTGAGGGTCTGTCAGGCTGATGTCAGGCAG +
Preference number: 6 (lower is better)
Translates to: RQRSRAKGHGGC*GLRVCQADVRQ
Trigger: CTGCCTGACATCAGCCTGACAGACCCTCAGACCCCAGCAGCCTCCGTGCCCCTTAGCACGGCTCCTCTGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GCAAAGCTCTCCAGCAGCCGGCTCACCGCCCGCCCCTaGCCCTGCTTGCTGACAGCCTCTCTCTTCACCTTC +
Preference number: 6 (lower is better)
Translates to: AKLSSSRLTARP*PCLLTASLFTF
Trigger: GAAGGTGAAGAGAGAGGCTGTCAGCAAGCAGGGCCAGGGGCGGGCGGTGAGCCGGCTGCTGGAGAGCTTTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GCTTCAGCCCGTTCAGCCTTCTTGGCCCTAAGCAGCTaGTGGGCTCCTCCGGGAAGGCCTGCCCCAGCCCCT +
Preference number: 6 (lower is better)
Translates to: ASARSAFLALSS*WAPPGRPAPAP
Trigger: AGGGGCTGGGGCAGGCCTTCCCGGAGGAGCCCACAAGCTGCTTAGGGCCAAGAAGGCTGAACGGGCTGAAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp AGCCTGGGGCCTCTGTCTGGGTCAGCAGCTGGGGCCTaGAGTGAAGTGACTGGGCTGTCCAGGTTAGCAGCC +
Preference number: 6 (lower is better)
Translates to: SLGPLSGSAAGA*SEVTGLSRLAA
Trigger: GGCTGCTAACCTGGACAGCCCAGTCACTTCACTGCAGGCCCCAGCTGCTGACCCAGACAGAGGCCCCAGGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CAGGCAGTGAGCTTGAGTGTTTGCGCTTTCTTGGCCTaGCAGGCCCCCGCCGTGCAGGGCTCCGTGAGCTCT +
Preference number: 6 (lower is better)
Translates to: QAVSLSVCAFLA*QAPAVQGSVSS
Trigger: AGAGCTCACGGAGCCCTGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACTGCCTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CCGAGGATGGCAACTCGGCCTGGCCACAGCTCTTCTTaGACCGCACCTTCTCCGAGGAGACGGACTGCAGGC +
Preference number: 6 (lower is better)
Translates to: PRMATRPGHSSS*TAPSPRRRTAG
Trigger: GCCTGCAGTCCGTCTCCTCGGAGAAGGTGCGGTGCAAGAAGAGCTGTGGCCAGGCCGAGTTGCCATCCTCGG
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp GTCCTGCAGGTCTTCCTTGTGGATGGTGCAGGACCGTaGCAGGGCGGCGCTCTGCTCTGCGCTGAGCTGTAC +
Preference number: 6 (lower is better)
Translates to: VLQVFLVDGAGP*QGGALLCAELY
Trigger: GTACAGCTCAGCGCAGAGCAGAGCGCCGCCCTGGCACGGTCCTGCACCATCCACAAGGAAGACCTGCAGGAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp ACCCTCATGGTCCAGCTTAACCAGAAACTCGCCGCCTaGCCGCCGCCTCCCGGCCTTTTCTGCTTCAGCCCG +
Preference number: 6 (lower is better)
Translates to: TLMVQLNQKLAA*PPPPGLFCFSP
Trigger: CGGGCTGAAGCAGAAAAGGCCGGGAGGCGGCGGGCAGGCGGCGAGTTTCTGGTTAAGCTGGACCATGAGGGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CAGGGCCTGCCTCCTTGCAGGGCCCCTCGGCAGGCATaGGCGGCACCAGCTTCTGTCGATCTTTACCACTGT +
Preference number: 6 (lower is better)
Translates to: QGLPPCRAPRQA*AAPASVDLYHC
Trigger: ACAGTGGTAAAGATCGACAGAAGCTGGTGCCGCCCATGCCTGCCGAGGGGCCCTGCAAGGAGGCAGGCCCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CCTGGGCCCTTAGTGGCTGGAAACTTGGCTTCCTGCTaGACGCAGCTGGCTTTGAGGCTGCCCAGGCCCACG +
Preference number: 6 (lower is better)
Translates to: PGPLVAGNLASC*TQLALRLPRPT
Trigger: CGTGGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp TGGCTTCAGCTGGGCCACCTTGTGGGCCACCGAGGATaGCAACTCGGCCTGGCCACAGCTCTTCTTGCACCG +
Preference number: 6 (lower is better)
Translates to: WLQLGHLVGHRG*QLGLATALLAP
Trigger: CGGTGCAAGAAGAGCTGTGGCCAGGCCGAGTTGCCATCCTCGGTGGCCCACAAGGTGGCCCAGCTGAAGCCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CTGGCTCTGTACGCAGGCCAGTTTTCACCTTGCCCTTaGCCTTCTTCTTGCCTGGTGCACCCGGGGGCCGCC +
Preference number: 6 (lower is better)
Translates to: LALYAGQFSPCP*PSSCLVHPGAA
Trigger: GGCGGCCCCCGGGTGCACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCCTGCGTACAGAGCCAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CACAGGGCAGTGGGTACTTGCGCAGAGCCAGCCCCATaGGTAGCGGATGCACAGGCGCCCGACCCTTCTTGT +
Preference number: 6 (lower is better)
Translates to: HRAVGTCAEPAP*VADAQAPDPSC
Trigger: ACAAGAAGGGTCGGGCGCCTGTGCATCCGCTACCCATGGGGCTGGCTCTGCGCAAGTACCCACTGCCCTGTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp CCTGGCTCTGTACGCAGGCCAGTTTTCACCTTGCCCTaGGCCTTCTTCTTGCCTGGTGCACCCGGGGGCCGC +
Preference number: 6 (lower is better)
Translates to: PGSVRRPVFTLP*AFFLPGAPGGR
Trigger: GCGGCCCCCGGGTGCACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCCTGCGTACAGAGCCAGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp CAGTCGGGTCTTTCCACTGGGCCTGGGCCCTTAGTGGCTGGAAACTaGGCTTCCTGCTGGACGCAGCTGGCTTTGAGGCTGCCCAGGCCC +
Preference number: 6 (lower is better)
Translates to: QSGLSTGPGPLVAGN*ASCWTQLALRLPRP
Trigger: GGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCCAGTGGAAAGACCCGACTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 72 bp AGAGGATGTGGGGCCACTGGGGTGTGCCGACGCTGCTaGGCCCAGGCTGCTGGTGAGGAAGCTGCCCATAAA +
Preference number: 6 (lower is better)
Translates to: RGCGATGVCRRC*AQAAGEEAAHK
Trigger: TTTATGGGCAGCTTCCTCACCAGCAGCCTGGGCTCAGCAGCGTCGGCACACCCCAGTGGCCCCACATCCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 72 bp GAGGAAGCGGTCAAACTCCTTAGGACCCTTCTGCAGTaGGGCAGCCTCGATGCGGTCCCGGCTGCAGGACCC +
Preference number: 6 (lower is better)
Translates to: EEAVKLLRTLLQ*GSLDAVPAAGP
Trigger: GGGTCCTGCAGCCGGGACCGCATCGAGGCTGCCTCACTGCAGAAGGGTCCTAAGGAGTTTGACCGCTTCCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 72 bp CTGGAAACTTGGCTTCCTGCTGGACGCAGCTGGCTTTaGGGCTGCCCAGGCCCACGAACGGAGCCTTCTGGC +
Preference number: 6 (lower is better)
Translates to: LETWLPAGRSWL*GCPGPRTEPSG
Trigger: GCCAGAAGGCTCCGTTCGTGGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 72 bp GGGTGTCCCGGGCCCGCAGCTTCTTGGTGCTTCCGTTaGGCTGGAAGAGGTTCTGTAGTACCCCCGGCCCTT +
Preference number: 6 (lower is better)
Translates to: GCPGPAASWCFR*AGRGSVVPPAL
Trigger: AAGGGCCGGGGGTACTACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCGGGACACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CCAGCTCCACGGACTTGCGTTTCGTCTCGGCCCCGCTaGCTCCCGATTCTACCTCAGGAGCCACCAAGTGCT +
Preference number: 6 (lower is better)
Translates to: PAPRTCVSSRPR*LPILPQEPPSA
Trigger: AGCACTTGGTGGCTCCTGAGGTAGAATCGGGAGGCAGCGGGGCCGAGACGAAACGCAAGTCCGTGGAGCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp GCCGCCCACTGTTGGTATTGTAGGCTGTATCGGGCCTaGCGACCGTGTCCTTCTGCCTGGCCAAGGCCACTG +
Preference number: 6 (lower is better)
Translates to: AAHCWYCRLYRA*RPCPSAWPRPL
Trigger: CAGTGGCCTTGGCCAGGCAGAAGGACACGGTCGGCAGGCCCGATACAGCCTACAATACCAACAGTGGGCGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CCACTGCGGGTTGGGCTTGGAATTTGTGCATCTCCCTaGCACTGTCCCCATCGGGGTGTGGATGCCGTGCCG +
Preference number: 6 (lower is better)
Translates to: PLRVGLGICASP*HCPHRGVDAVP
Trigger: CGGCACGGCATCCACACCCCGATGGGGACAGTGGCAGGGAGATGCACAAATTCCAAGCCCAACCCGCAGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CCAGGAGTGCCTGGCAGTCCTCACTGTCATAGCCGTTaGCTGCCTCATGTGCCACAGCCACTGCGGGTTGGG +
Preference number: 6 (lower is better)
Translates to: PGVPGSPHCHSR*LPHVPQPLRVG
Trigger: CCCAACCCGCAGTGGCTGTGGCACATGAGGCAGGCAACGGCTATGACAGTGAGGACTGCCAGGCACTCCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044985.14
CDS GCA 72 bp CTGTCCTCCTTCGGGATCAGGACGGGCAGTCCGTCCTaGAGGTCTTCCTTGTGGATGGTGCAGGACCGTGCC +
Preference number: 6 (lower is better)
Translates to: LSSFGIRTGSPS*RSSLWMVQDRA
Trigger: GGCACGGTCCTGCACCATCCACAAGGAAGACCTGCAGGACGGACTGCCCGTCCTGATCCCGAAGGAGGACAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp GGGTACTTGCGCAGAGCCAGCCCCATGGGTAGCGGATaGACAGGCGCCCGACCCTTCTTGTCCTTGCCAATG +
Preference number: 6 (lower is better)
Translates to: GYLRRASPMGSG*TGARPFLSLPM
Trigger: CATTGGCAAGGACAAGAAGGGTCGGGCGCCTGTGCATCCGCTACCCATGGGGCTGGCTCTGCGCAAGTACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GGGCGTAGGAGACTCCATAGGGTGCACCATGGTCGGTaGCCATGGCCGCATCCAGGTGCCGGTCCTTTCCAT +
Preference number: 6 (lower is better)
Translates to: GRRRLHRVHHGR*PWPHPGAGPFH
Trigger: ATGGAAAGGACCGGCACCTGGATGCGGCCATGGCCACCGACCATGGTGCACCCTATGGAGTCTCCTACGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CCTGCTGCGGGCACAGTCGGGTCTTTCCACTGGGCCTaGGCCCTTAGTGGCTGGAAACTTGGCTTCCTGCTG +
Preference number: 6 (lower is better)
Translates to: PAAGTVGSFHWA*ALSGWKLGFLL
Trigger: CAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCCAGTGGAAAGACCCGACTGTGCCCGCAGCAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp ACCAAGGCATCCAAGCCTGGCAGCGCTTTGGGTGGGTaGCTATGGTTGGGAGTCCCCCAGTCCACCTCCGAG +
Preference number: 6 (lower is better)
Translates to: TKASKPGSALGG*LWLGVPQSTSE
Trigger: CTCGGAGGTGGACTGGGGGACTCCCAACCATAGCCACCCACCCAAAGCGCTGCCAGGCTTGGATGCCTTGGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp AGCCACCAAGGCATCCAAGCCTGGCAGCGCTTTGGGTaGGTGGCTATGGTTGGGAGTCCCCCAGTCCACCTC +
Preference number: 6 (lower is better)
Translates to: SHQGIQAWQRFG*VAMVGSPPVHL
Trigger: GAGGTGGACTGGGGGACTCCCAACCATAGCCACCCACCCAAAGCGCTGCCAGGCTTGGATGCCTTGGTGGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CCAGGATGGCCTTGGCGTTGCGGGCTGACAGAGCGATaGACAAGGCCCCATTCTTCCGCCTCAGGACTGGCT +
Preference number: 6 (lower is better)
Translates to: PGWPWRCGLTER*TRPHSSASGLA
Trigger: AGCCAGTCCTGAGGCGGAAGAATGGGGCCTTGTCCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp TGCCTCTGCGGCCTAGGAAGTGGTCTGAGGCCCCCGTaGGGGACTTGGCACCTGAGGTTAGGAGGTCGACTT +
Preference number: 6 (lower is better)
Translates to: CLCGLGSGLRPP*GTWHLRLGGRL
Trigger: AAGTCGACCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGGCCTCAGACCACTTCCTAGGCCGCAGAGGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GCCCCGGCCCATCCTCGTCCTCATCGGAGTAGGAGCTaGGGCAGTCACTATCACAGGGCAGTGGGTACTTGC +
Preference number: 6 (lower is better)
Translates to: APAHPRPHRSRS*GSHYHRAVGTC
Trigger: GCAAGTACCCACTGCCCTGTGATAGTGACTGCCCCAGCTCCTACTCCGATGAGGACGAGGATGGGCCGGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp CCTGGTGGGAGTCCTCCCTCAACAGGAGGGGGTAGATaGGCAAGGTCCTGGGTGGCATCCCTGGCCCTTGAG +
Preference number: 6 (lower is better)
Translates to: PGGSPPSTGGGR*ARSWVASLALE
Trigger: CTCAAGGGCCAGGGATGCCACCCAGGACCTTGCCAATCTACCCCCTCCTGTTGAGGGAGGACTCCCACCAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GTAGCAGCCACCAAGGCATCCAAGCCTGGCAGCGCTTaGGGTGGGTGGCTATGGTTGGGAGTCCCCCAGTCC +
Preference number: 6 (lower is better)
Translates to: VAATKASKPGSA*GGWLWLGVPQS
Trigger: GGACTGGGGGACTCCCAACCATAGCCACCCACCCAAAGCGCTGCCAGGCTTGGATGCCTTGGTGGCTGCTAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp ACCGAGGATGGCAACTCGGCCTGGCCACAGCTCTTCTaGCACCGCACCTTCTCCGAGGAGACGGACTGCAGG +
Preference number: 6 (lower is better)
Translates to: TEDGNSAWPQLF*HRTFSEETDCR
Trigger: CCTGCAGTCCGTCTCCTCGGAGAAGGTGCGGTGCAAGAAGAGCTGTGGCCAGGCCGAGTTGCCATCCTCGGT
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GCTTCGCTGGGCGGGTGGCCCTCATTGGCTGCTTTTTaGGTCCTCCGGCAGCTGCTGGACACCAACAGGGCT +
Preference number: 6 (lower is better)
Translates to: ASLGGWPSLAAF*VLRQLLDTNRA
Trigger: AGCCCTGTTGGTGTCCAGCAGCTGCCGGAGGACCAAAAAAGCAGCCAATGAGGGCCACCCGCCCAGCGAAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp CGGCCTAGGAAGTGGTCTGAGGCCCCCGTGGGGGACTaGGCACCTGAGGTTAGGAGGTCGACTTTGCCAGCT +
Preference number: 6 (lower is better)
Translates to: RPRKWSEAPVGD*APEVRRSTLPA
Trigger: AGCTGGCAAAGTCGACCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGGCCTCAGACCACTTCCTAGGCCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp AGGGTGTCCCGGGCCCGCAGCTTCTTGGTGCTTCCGTaGAGCTGGAAGAGGTTCTGTAGTACCCCCGGCCCT +
Preference number: 6 (lower is better)
Translates to: RVSRARSFLVLP*SWKRFCSTPGP
Trigger: AGGGCCGGGGGTACTACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCGGGACACCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp CCCTTAGTGGCTGGAAACTTGGCTTCCTGCTGGACGCAGCTGGCTTaGAGGCTGCCCAGGCCCACGAACGGAGCCTTCTGGCCCACGACT +
Preference number: 6 (lower is better)
Translates to: PLVAGNLASCWTQLA*RLPRPTNGAFWPTT
Trigger: AGTCGTGGGCCAGAAGGCTCCGTTCGTGGGCCTGGGCAGCCTCAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp TCTGCCTTCCCTGGTGGGAGTCCTCCCTCAACAGGAGGGGGTAGATaGGCAAGGTCCTGGGTGGCATCCCTGGCCCTTGAGAGCAGCCCA +
Preference number: 6 (lower is better)
Translates to: SAFPGGSPPSTGGGR*ARSWVASLALESSP
Trigger: TGGGCTGCTCTCAAGGGCCAGGGATGCCACCCAGGACCTTGCCAATCTACCCCCTCCTGTTGAGGGAGGACTCCCACCAGGGAAGGCAGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp AGGTCCACAGTAGCAGCCACCAAGGCATCCAAGCCTGGCAGCGCTTaGGGTGGGTGGCTATGGTTGGGAGTCCCCCAGTCCACCTCCGAG +
Preference number: 6 (lower is better)
Translates to: RSTVAATKASKPGSA*GGWLWLGVPQSTSE
Trigger: CTCGGAGGTGGACTGGGGGACTCCCAACCATAGCCACCCACCCAAAGCGCTGCCAGGCTTGGATGCCTTGGTGGCTGCTACTGTGGACCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp TCACCTGCCACGGCACAGGCCTCTGCTACTTGGAAAGAGCGGCTCTaGTCAGCCAGGTGTCCCACAGAAGGCACAAAGGTGGGCCCGCTG +
Preference number: 6 (lower is better)
Translates to: SPATAQASATWKERL*SARCPTEGTKVGPL
Trigger: CAGCGGGCCCACCTTTGTGCCTTCTGTGGGACACCTGGCTGACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTGTGCCGTGGCAGGTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp TTCTGTCCCACTGGAGGGCCAGCAGGGGCCTCTTTGTTGGCCACTTaGTCTAAAGTGCAGCAGGCCTGGGTGGCCTTCCCACCCAGTGGG +
Preference number: 6 (lower is better)
Translates to: FCPTGGPAGASLLAT*SKVQQAWVAFPPSG
Trigger: CCCACTGGGTGGGAAGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTGGCCCTCCAGTGGGACAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp AAGGCCCCATTCTTCCGCCTCAGGACTGGCTGCAACATGGCGCTCTaGCGGGTGGCTCTCTTGAGGCGCTCACTGGCAAGTTTGCTGCCC +
Preference number: 6 (lower is better)
Translates to: KAPFFRLRTGCNMAL*RVALLRRSLASLLP
Trigger: GGGCAGCAAACTTGCCAGTGAGCGCCTCAAGAGAGCCACCCGCAAGAGCGCCATGTTGCAGCCAGTCCTGAGGCGGAAGAATGGGGCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp CTGCCTGCCTCATGTGCCACAGCCACTGCGGGTTGGGCTTGGAATTaGTGCATCTCCCTGCCACTGTCCCCATCGGGGTGTGGATGCCGT +
Preference number: 6 (lower is better)
Translates to: LPASCATATAGWAWN*CISLPLSPSGCGCR
Trigger: ACGGCATCCACACCCCGATGGGGACAGTGGCAGGGAGATGCACAAATTCCAAGCCCAACCCGCAGTGGCTGTGGCACATGAGGCAGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 72 bp TCTTCAAAGTGGGCGACTGACAGCAGGGTGATAGCTTaGCCAGGCCTGCAGTGGCGGAGGAGGGGGTGCCCT +
Preference number: 6 (lower is better)
Translates to: SSKWATDSRVIA*PGLQWRRRGCP
Trigger: AGGGCACCCCCTCCTCCGCCACTGCAGGCCTGGTCAAGCTATCACCCTGCTGTCAGTCGCCCACTTTGAAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 72 bp CCTGCTCTTTCCCAGGATGGCCTTGGCGTTGCGGGCTaGCAGAGCGATGGACAAGGCCCCATTCTTCCGCCT +
Preference number: 6 (lower is better)
Translates to: PALSQDGLGVAG*QSDGQGPILPP
Trigger: AGGCGGAAGAATGGGGCCTTGTCCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCCTGGGAAAGAGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 72 bp TGCAGGACCGTGCCAGGGCGGCGCTCTGCTCTGCGCTaGGCTGTACACCGGCTTCTTCCTCTTCTTCTTCCT +
Preference number: 6 (lower is better)
Translates to: CRTVPGRRSALR*AVHRLLPLLLP
Trigger: AGGAAGAAGAAGAGGAAGAAGCCGGTGTACAGCTCAGCGCAGAGCAGAGCGCCGCCCTGGCACGGTCCTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CCCATGAGGAAGCGGTCAAACTCCTTAGGACCCTTCTaGAGTGAGGCAGCCTCGATGCGGTCCCGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: PMRKRSNSLGPF*SEAASMRSRLQ
Trigger: CTGCAGCCGGGACCGCATCGAGGCTGCCTCACTGCAGAAGGGTCCTAAGGAGTTTGACCGCTTCCTCATGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CATGGCCGCATCCAGGTGCCGGTCCTTTCCATCACCTaGCACGGCACAGGCCTCTGCTACTTGGAAAGAGCG +
Preference number: 6 (lower is better)
Translates to: HGRIQVPVLSIT*HGTGLCYLERA
Trigger: CGCTCTTTCCAAGTAGCAGAGGCCTGTGCCGTGGCAGGTGATGGAAAGGACCGGCACCTGGATGCGGCCATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CCCGATTCTACCTCAGGAGCCACCAAGTGCTGCTGGTaGCGGATCCTGGCTACCTTCTGTCCCACTGGAGGG +
Preference number: 6 (lower is better)
Translates to: PDSTSGATKCCW*RILATFCPTGG
Trigger: CCCTCCAGTGGGACAGAAGGTAGCCAGGATCCGGCACCAGCAGCACTTGGTGGCTCCTGAGGTAGAATCGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CAGCTTCCTCCAGCTCCATGTGGCGATCCTCAGGCTTaGGCTGGAACTGGGCAACTCGCTGTAGCTCCAGGG +
Preference number: 6 (lower is better)
Translates to: QLPPAPCGDPQA*AGTGQLAVAPG
Trigger: CCCTGGAGCTACAGCGAGTTGCCCAGTTCCAGCGCAAGCCTGAGGATCGCCACATGGAGCTGGAGGAAGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp GAGTGCCTGGCAGTCCTCACTGTCATAGCCGTTGCCTaGCTCATGTGCCACAGCCACTGCGGGTTGGGCTTG +
Preference number: 6 (lower is better)
Translates to: ECLAVLTVIAVA*LMCHSHCGLGL
Trigger: CAAGCCCAACCCGCAGTGGCTGTGGCACATGAGGCAGGCAACGGCTATGACAGTGAGGACTGCCAGGCACTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044985.14
CDS GCA 72 bp AGCTGGGGCAGTCACTATCACAGGGCAGTGGGTACTTaGGCAGAGCCAGCCCCATGGGTAGCGGATGCACAG +
Preference number: 6 (lower is better)
Translates to: SWGSHYHRAVGT*AEPAPWVADAQ
Trigger: CTGTGCATCCGCTACCCATGGGGCTGGCTCTGCGCAAGTACCCACTGCCCTGTGATAGTGACTGCCCCAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GAGCTTCATGGGAGTGGGAGAACCAGATCTGAGAGGTaGCAGGGTGGGATCCTCGGTAGGCCGGCTCAGAGG +
Preference number: 6 (lower is better)
Translates to: ELHGSGRTRSER*QGGILGRPAQR
Trigger: CCTCTGAGCCGGCCTACCGAGGATCCCACCCTGCCACCTCTCAGATCTGGTTCTCCCACTCCCATGAAGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp AGGAGACTCCATAGGGTGCACCATGGTCGGTGGCCATaGCCGCATCCAGGTGCCGGTCCTTTCCATCACCTG +
Preference number: 6 (lower is better)
Translates to: RRLHRVHHGRWP*PHPGAGPFHHL
Trigger: CAGGTGATGGAAAGGACCGGCACCTGGATGCGGCCATGGCCACCGACCATGGTGCACCCTATGGAGTCTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CTGCTGGTGCCGGATCCTGGCTACCTTCTGTCCCACTaGAGGGCCAGCAGGGGCCTCTTTGTTGGCCACTTT +
Preference number: 6 (lower is better)
Translates to: LLVPDPGYLLSH*RASRGLFVGHF
Trigger: AAAGTGGCCAACAAAGAGGCCCCTGCTGGCCCTCCAGTGGGACAGAAGGTAGCCAGGATCCGGCACCAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CCCTTTCGTTCCTCGATGATGGCCATGGAGGTGTCGTaGCCCGTCTGTACACCCCACGGAGGCATGTGGTGG +
Preference number: 6 (lower is better)
Translates to: PFRSSMMAMEVS*PVCTPHGGMWW
Trigger: CCACCACATGCCTCCGTGGGGTGTACAGACGGGCCACGACACCTCCATGGCCATCATCGAGGAACGAAAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GGAACTGGGCAACTCGCTGTAGCTCCAGGGCCTGTGTaGCCCGATGTTGCTGCTGCTGCTGTTGCTGCTGCT +
Preference number: 6 (lower is better)
Translates to: GTGQLAVAPGPV*PDVAAAAVAAA
Trigger: AGCAGCAGCAACAGCAGCAGCAGCAACATCGGGCCACACAGGCCCTGGAGCTACAGCGAGTTGCCCAGTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CTGGTGGGAGTCCTCCCTCAACAGGAGGGGGTAGATTaGCAAGGTCCTGGGTGGCATCCCTGGCCCTTGAGA +
Preference number: 6 (lower is better)
Translates to: LVGVLPQQEGVD*QGPGWHPWPLR
Trigger: TCTCAAGGGCCAGGGATGCCACCCAGGACCTTGCCAATCTACCCCCTCCTGTTGAGGGAGGACTCCCACCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp ACAGCCTTGGCTTTCTTGCTGTCACTTCTGGCAAGCTaGCCCCCGGGACGCAGGGCAGGCAGTGAGCTTGAG +
Preference number: 6 (lower is better)
Translates to: TALAFLLSLLAS*PPGRRAGSELE
Trigger: CTCAAGCTCACTGCCTGCCCTGCGTCCCGGGGGCCAGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp TTGCACGAACAGCCTTGGCTTTCTTGCTGTCACTTCTaGCAAGCTGGCCCCCGGGACGCAGGGCAGGCAGTG +
Preference number: 6 (lower is better)
Translates to: LHEQPWLSCCHF*QAGPRDAGQAV
Trigger: CACTGCCTGCCCTGCGTCCCGGGGGCCAGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GACGCCGTGACGCTCTTGGCTCTAGATAGCTTCTTCTaGATGCGCCCACCTGGGGCAGCCTCTTTGCGCTGG +
Preference number: 6 (lower is better)
Translates to: DAVTLLALDSFF*MRPPGAASLRW
Trigger: CCAGCGCAAAGAGGCTGCCCCAGGTGGGCGCATCCAGAAGAAGCTATCTAGAGCCAAGAGCGTCACGGCGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GGCCTAGGAAGTGGTCTGAGGCCCCCGTGGGGGACTTaGCACCTGAGGTTAGGAGGTCGACTTTGCCAGCTT +
Preference number: 6 (lower is better)
Translates to: GLGSGLRPPWGT*HLRLGGRLCQL
Trigger: AAGCTGGCAAAGTCGACCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGGCCTCAGACCACTTCCTAGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp TCCCGGGCCCGCAGCTTCTTGGTGCTTCCGTTGAGCTaGAAGAGGTTCTGTAGTACCCCCGGCCCTTTGCCA +
Preference number: 6 (lower is better)
Translates to: SRARSFLVLPLS*KRFCSTPGPLP
Trigger: TGGCAAAGGGCCGGGGGTACTACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp AGGCGCCCGACCCTTCTTGTCCTTGCCAATGAGGGCTaGGTGTGCGTAACTGGGGTTGCTAAGAGGTCGCCC +
Preference number: 6 (lower is better)
Translates to: RRPTLLVLANEG*VCVTGVAKRSP
Trigger: GGGCGACCTCTTAGCAACCCCAGTTACGCACACCCAGCCCTCATTGGCAAGGACAAGAAGGGTCGGGCGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GCAGCTTCCTCCAGCTCCATGTGGCGATCCTCAGGCTaGCGCTGGAACTGGGCAACTCGCTGTAGCTCCAGG +
Preference number: 6 (lower is better)
Translates to: AASSSSMWRSSG*RWNWATRCSSR
Trigger: CCTGGAGCTACAGCGAGTTGCCCAGTTCCAGCGCAAGCCTGAGGATCGCCACATGGAGCTGGAGGAAGCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp TGTGGATGCCGTGCCGCCCCTGACGCCGTGACGCTCTaGGCTCTAGATAGCTTCTTCTGGATGCGCCCACCT +
Preference number: 6 (lower is better)
Translates to: CGCRAAPDAVTL*ALDSFFWMRPP
Trigger: AGGTGGGCGCATCCAGAAGAAGCTATCTAGAGCCAAGAGCGTCACGGCGTCAGGGGCGGCACGGCATCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GCGGTTCCTGGCTCTGTACGCAGGCCAGTTTTCACCTaGCCCTTGGCCTTCTTCTTGCCTGGTGCACCCGGG +
Preference number: 6 (lower is better)
Translates to: AVPGSVRRPVFT*PLAFFLPGAPG
Trigger: CCCGGGTGCACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAACTGGCCTGCGTACAGAGCCAGGAACCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp TTGCGGGTGGCTCTCTTGAGGCGCTCACTGGCAAGTTaGCTGCCCTCCTCTCGGCAGGCAAAAGTCCGGGTG +
Preference number: 6 (lower is better)
Translates to: LRVALLRRSLAS*LPSSRQAKVRV
Trigger: CACCCGGACTTTTGCCTGCCGAGAGGAGGGCAGCAAACTTGCCAGTGAGCGCCTCAAGAGAGCCACCCGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GAGCTGGGGCAGTCACTATCACAGGGCAGTGGGTACTaGCGCAGAGCCAGCCCCATGGGTAGCGGATGCACA +
Preference number: 6 (lower is better)
Translates to: ELGQSLSQGSGY*RRASPMGSGCT
Trigger: TGTGCATCCGCTACCCATGGGGCTGGCTCTGCGCAAGTACCCACTGCCCTGTGATAGTGACTGCCCCAGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp CTGGCCAGGGAGGCCTTGCCCATGTCTCCATTGAGTACCTTGGTGTaGAGCAGGCAAGAGGTGAGGTGTTTGGGGCGGCCCTCACAGGAC +
Preference number: 6 (lower is better)
Translates to: LAREALPMSPLSTLV*SRQEVRCLGRPSQD
Trigger: GTCCTGTGAGGGCCGCCCCAAACACCTCACCTCTTGCCTGCTCAACACCAAGGTACTCAATGGAGACATGGGCAAGGCCTCCCTGGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp GTGCCGGTCCTTTCCATCACCTGCCACGGCACAGGCCTCTGCTACTaGGAAAGAGCGGCTCTTGTCAGCCAGGTGTCCCACAGAAGGCAC +
Preference number: 6 (lower is better)
Translates to: VPVLSITCHGTGLCY*ERAALVSQVSHRRH
Trigger: GTGCCTTCTGTGGGACACCTGGCTGACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTGTGCCGTGGCAGGTGATGGAAAGGACCGGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp CTGGCTACCTTCTGTCCCACTGGAGGGCCAGCAGGGGCCTCTTTGTaGGCCACTTTGTCTAAAGTGCAGCAGGCCTGGGTGGCCTTCCCA +
Preference number: 6 (lower is better)
Translates to: LATFCPTGGPAGASL*ATLSKVQQAWVAFP
Trigger: TGGGAAGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTGGCCCTCCAGTGGGACAGAAGGTAGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp TCAGCACACAGCAGACTTAGGCTTGCACGAACAGCCTTGGCTTTCTaGCTGTCACTTCTGGCAAGCTGGCCCCCGGGACGCAGGGCAGGC +
Preference number: 6 (lower is better)
Translates to: SAHSRLRLARTALAF*LSLLASWPPGRRAG
Trigger: GCCTGCCCTGCGTCCCGGGGGCCAGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAGCCTAAGTCTGCTGTGTGCTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp TTGCCTGCCTCATGTGCCACAGCCACTGCGGGTTGGGCTTGGAATTaGTGCATCTCCCTGCCACTGTCCCCATCGGGGTGTGGATGCCGT +
Preference number: 6 (lower is better)
Translates to: LPASCATATAGWAWN*CISLPLSPSGCGCR
Trigger: ACGGCATCCACACCCCGATGGGGACAGTGGCAGGGAGATGCACAAATTCCAAGCCCAACCCGCAGTGGCTGTGGCACATGAGGCAGGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044985.14
CDS CAA 90 bp ATGGCGCTCTTGCGGGTGGCTCTCTTGAGGCGCTCACTGGCAAGTTaGCTGCCCTCCTCTCGGCAGGCAAAAGTCCGGGTGGGACTGAAA +
Preference number: 6 (lower is better)
Translates to: MALLRVALLRRSLAS*LPSSRQAKVRVGLK
Trigger: TTTCAGTCCCACCCGGACTTTTGCCTGCCGAGAGGAGGGCAGCAAACTTGCCAGTGAGCGCCTCAAGAGAGCCACCCGCAAGAGCGCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp CTGCCTCTGCGGCCTAGGAAGTGGTCTGAGGCCCCCGTGGGGGACTaGGCACCTGAGGTTAGGAGGTCGACTTTGCCAGCTTTGTCTTTG +
Preference number: 6 (lower is better)
Translates to: LPLRPRKWSEAPVGD*APEVRRSTLPALSL
Trigger: CAAAGACAAAGCTGGCAAAGTCGACCTCCTAACCTCAGGTGCCAAGTCCCCCACGGGGGCCTCAGACCACTTCCTAGGCCGCAGAGGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp ATGGGAAACAGGGTGTCCCGGGCCCGCAGCTTCTTGGTGCTTCCGTaGAGCTGGAAGAGGTTCTGTAGTACCCCCGGCCCTTTGCCACCT +
Preference number: 6 (lower is better)
Translates to: MGNRVSRARSFLVLP*SWKRFCSTPGPLPP
Trigger: AGGTGGCAAAGGGCCGGGGGTACTACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCGGGACACCCTGTTTCCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp GCCATGCTATGCATGGGAAACAGGGTGTCCCGGGCCCGCAGCTTCTaGGTGCTTCCGTTGAGCTGGAAGAGGTTCTGTAGTACCCCCGGC +
Preference number: 6 (lower is better)
Translates to: AMLCMGNRVSRARSF*VLPLSWKRFCSTPG
Trigger: GCCGGGGGTACTACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCGGGACACCCTGTTTCCCATGCATAGCATGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 72 bp AGCCAGCTCACTGAGCAGGGCAATCCCATGAATCCCTaGGCTATGCGGCAGAGGAGCCGTGCTAAGGGGCAC +
Preference number: 6 (lower is better)
Translates to: SQLTEQGNPMNP*AMRQRSRAKGH
Trigger: GTGCCCCTTAGCACGGCTCCTCTGCCGCATAGCTCAGGGATTCATGGGATTGCCCTGCTCAGTGAGCTGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CCGGTCCTTTCCATCACCTGCCACGGCACAGGCCTCTaGTACTTGGAAAGAGCGGCTCTTGTCAGCCAGGTG +
Preference number: 6 (lower is better)
Translates to: PVLSITCHGTGL*YLERAALVSQV
Trigger: CACCTGGCTGACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTGTGCCGTGGCAGGTGATGGAAAGGACCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CAGCAGGGGCCTCTTTGTTGGCCACTTTGTCTAAAGTaGAGCAGGCCTGGGTGGCCTTCCCACCCAGTGGGT +
Preference number: 6 (lower is better)
Translates to: QQGPLCWPLCLK*SRPGWPSHPVG
Trigger: ACCCACTGGGTGGGAAGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CTGCCTCCCGATTCTACCTCAGGAGCCACCAAGTGCTaGTGGTGCCGGATCCTGGCTACCTTCTGTCCCACT +
Preference number: 6 (lower is better)
Translates to: LPPDSTSGATKC*WCRILATFCPT
Trigger: AGTGGGACAGAAGGTAGCCAGGATCCGGCACCAGCAGCACTTGGTGGCTCCTGAGGTAGAATCGGGAGGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp TGTGCCACAGCCACTGCGGGTTGGGCTTGGAATTTGTaGATCTCCCTGCCACTGTCCCCATCGGGGTGTGGA +
Preference number: 6 (lower is better)
Translates to: CATATAGWAWNL*ISLPLSPSGCG
Trigger: TCCACACCCCGATGGGGACAGTGGCAGGGAGATGCACAAATTCCAAGCCCAACCCGCAGTGGCTGTGGCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CGGAAGCTGTTACCAAACACGGGGGTAGCCATGCTATaGATGGGAAACAGGGTGTCCCGGGCCCGCAGCTTC +
Preference number: 6 (lower is better)
Translates to: RKLLPNTGVAML*MGNRVSRARSF
Trigger: GAAGCTGCGGGCCCGGGACACCCTGTTTCCCATGCATAGCATGGCTACCCCCGTGTTTGGTAACAGCTTCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GCTGCTGGTGAGGAAGCTGCCCATAAAAGAGGAGGCTaGGGGGTTTCCCATCAGACGGCTGCTGGCTGTGTG +
Preference number: 6 (lower is better)
Translates to: AAGEEAAHKRGG*GVSHQTAAGCV
Trigger: CACACAGCCAGCAGCCGTCTGATGGGAAACCCCCCAGCCTCCTCTTTTATGGGCAGCTTCCTCACCAGCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp TCTGTCCCACTGGAGGGCCAGCAGGGGCCTCTTTGTTaGCCACTTTGTCTAAAGTGCAGCAGGCCTGGGTGG +
Preference number: 6 (lower is better)
Translates to: SVPLEGQQGPLC*PLCLKCSRPGW
Trigger: CCACCCAGGCCTGCTGCACTTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTGGCCCTCCAGTGGGACAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CCTCCCGATTCTACCTCAGGAGCCACCAAGTGCTGCTaGTGCCGGATCCTGGCTACCTTCTGTCCCACTGGA +
Preference number: 6 (lower is better)
Translates to: PPDSTSGATKCC*CRILATFCPTG
Trigger: TCCAGTGGGACAGAAGGTAGCCAGGATCCGGCACCAGCAGCACTTGGTGGCTCCTGAGGTAGAATCGGGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GCTTTGAGGCTGCCCAGGCCCACGAACGGAGCCTTCTaGCCCACGACTAGGGCTTGGTTGCTGTATTTCAGC +
Preference number: 6 (lower is better)
Translates to: ALRLPRPTNGAF*PTTRAWLLYFS
Trigger: GCTGAAATACAGCAACCAAGCCCTAGTCGTGGGCCAGAAGGCTCCGTTCGTGGGCCTGGGCAGCCTCAAAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GTCGGGTCTTTCCACTGGGCCTGGGCCCTTAGTGGCTaGAAACTTGGCTTCCTGCTGGACGCAGCTGGCTTT +
Preference number: 6 (lower is better)
Translates to: VGSFHWAWALSG*KLGFLLDAAGF
Trigger: AAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCCAGTGGAAAGACCCGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp ATCCTGGAGTCAGGTCTGGTTCCAGCGTGGTCAGGTTaGTTCCAGCCCGCTGGCCCTCCTCACTCTTGTCCA +
Preference number: 6 (lower is better)
Translates to: ILESGLVPAWSG*FQPAGPPHSCP
Trigger: TGGACAAGAGTGAGGAGGGCCAGCGGGCTGGAACCAACCTGACCACGCTGGAACCAGACCTGACTCCAGGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CGGGTACCAGGTGGAAGGTACCGACTGGACTGTGGCTaGACATCAAGAACCGCCTCCTGCAGCAGCTGTTCC +
Preference number: 6 (lower is better)
Translates to: RVPGGRYRLDCG*TSRTASCSSCS
Trigger: GGAACAGCTGCTGCAGGAGGCGGTTCTTGATGTCCAGCCACAGTCCAGTCGGTACCTTCCACCTGGTACCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp TTTGGTCCTCCGGCAGCTGCTGGACACCAACAGGGCTaGCGAGGGCTCTGTACACTGGATCTTGAAGTCCGG +
Preference number: 6 (lower is better)
Translates to: FGPPAAAGHQQG*RGLCTLDLEVR
Trigger: CCGGACTTCAAGATCCAGTGTACAGAGCCCTCGCCAGCCCTGTTGGTGTCCAGCAGCTGCCGGAGGACCAAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp ACTGGAGGGCCAGCAGGGGCCTCTTTGTTGGCCACTTaGTCTAAAGTGCAGCAGGCCTGGGTGGCCTTCCCA +
Preference number: 6 (lower is better)
Translates to: TGGPAGASLLAT*SKVQQAWVAFP
Trigger: TGGGAAGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTGGCCCTCCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp CTTTCCACTGGGCCTGGGCCCTTAGTGGCTGGAAACTaGGCTTCCTGCTGGACGCAGCTGGCTTTGAGGCTG +
Preference number: 6 (lower is better)
Translates to: LSTGPGPLVAGN*ASCWTQLALRL
Trigger: CAGCCTCAAAGCCAGCTGCGTCCAGCAGGAAGCCAAGTTTCCAGCCACTAAGGGCCCAGGCCCAGTGGAAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GTCAGCTTCCTGCTCTTTCCCAGGATGGCCTTGGCGTaGCGGGCTGACAGAGCGATGGACAAGGCCCCATTC +
Preference number: 6 (lower is better)
Translates to: VSFLLFPRMALA*RADRAMDKAPF
Trigger: GAATGGGGCCTTGTCCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCCTGGGAAAGAGCAGGAAGCTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp ATCCTGGCTACCTTCTGTCCCACTGGAGGGCCAGCAGGGGCCTCTTaGTTGGCCACTTTGTCTAAAGTGCAGCAGGCCTGGGTGGCCTTC +
Preference number: 6 (lower is better)
Translates to: ILATFCPTGGPAGAS*LATLSKVQQAWVAF
Trigger: GAAGGCCACCCAGGCCTGCTGCACTTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTGGCCCTCCAGTGGGACAGAAGGTAGCCAGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp CCCAGGCCCACGAACGGAGCCTTCTGGCCCACGACTAGGGCTTGGTaGCTGTATTTCAGCAGGTTCTTCATGGCCGAGACCTCATCTGGC +
Preference number: 6 (lower is better)
Translates to: PRPTNGAFWPTTRAW*LYFSRFFMAETSSG
Trigger: GCCAGATGAGGTCTCGGCCATGAAGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCGTGGGCCAGAAGGCTCCGTTCGTGGGCCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp CTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCAGTGCATAGAGCTCTaGCTGCCGAAGCAGCTGGGACCGAGAATACACAGGGAGCTGGCC +
Preference number: 6 (lower is better)
Translates to: LLLLLLLLLLQCIEL*LPKQLGPRIHRELA
Trigger: GGCCAGCTCCCTGTGTATTCTCGGTCCCAGCTGCTTCGGCAGCAAGAGCTCTATGCACTGCAGCAGCAGCAGCAACAACAGCAGCAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp CCTCGTAGCTCAGCACACAGCAGACTTAGGCTTGCACGAACAGCCTaGGCTTTCTTGCTGTCACTTCTGGCAAGCTGGCCCCCGGGACGC +
Preference number: 6 (lower is better)
Translates to: PRSSAHSRLRLARTA*AFLLSLLASWPPGR
Trigger: GCGTCCCGGGGGCCAGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAGCCTAAGTCTGCTGTGTGCTGAGCTACGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp AGGGCCTGTGTGGCCCGATGTTGCTGCTGCTGCTGTTaGTGCTGCTGCTGTTGTTGTTGCTGCTGCTGTTGC +
Preference number: 6 (lower is better)
Translates to: RACVARCCCCCC*CCCCCCCCCCC
Trigger: GCAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACATCGGGCCACACAGGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp TGTAGCTCCAGGGCCTGTGTGGCCCGATGTTGCTGCTaGTGCTGTTGCTGCTGCTGCTGTTGTTGTTGCTGC +
Preference number: 6 (lower is better)
Translates to: CSSRACVARCCC*CCCCCCCCCCC
Trigger: GCAGCAACAACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACATCGGGCCACACAGGCCCTGGAGCTACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp ACTCGCTGTAGCTCCAGGGCCTGTGTGGCCCGATGTTaGTGCTGCTGCTGTTGCTGCTGCTGCTGTTGTTGT +
Preference number: 6 (lower is better)
Translates to: TRCSSRACVARC*CCCCCCCCCCC
Trigger: ACAACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACATCGGGCCACACAGGCCCTGGAGCTACAGCGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp TCAGCTTCCTGCTCTTTCCCAGGATGGCCTTGGCGTTaGGGGCTGACAGAGCGATGGACAAGGCCCCATTCT +
Preference number: 6 (lower is better)
Translates to: SASCSFPGWPWR*GLTERWTRPHS
Trigger: AGAATGGGGCCTTGTCCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCCTGGGAAAGAGCAGGAAGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CCGACCCTTCTTGTCCTTGCCAATGAGGGCTGGGTGTaGGTAACTGGGGTTGCTAAGAGGTCGCCCCAGCTT +
Preference number: 6 (lower is better)
Translates to: PTLLVLANEGWV*VTGVAKRSPQL
Trigger: AAGCTGGGGCGACCTCTTAGCAACCCCAGTTACGCACACCCAGCCCTCATTGGCAAGGACAAGAAGGGTCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GAGGGAGAGATCCAGGCCAGCTGTGGGGTTCAATCCTaGAGTCAGGTCTGGTTCCAGCGTGGTCAGGTTGGT +
Preference number: 6 (lower is better)
Translates to: EGEIQASCGVQS*SQVWFQRGQVG
Trigger: ACCAACCTGACCACGCTGGAACCAGACCTGACTCCAGGATTGAACCCCACAGCTGGCCTGGATCTCTCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CCGCTCTCCTCAAGCTGGGTTTCTTCCTCCTGTAGCTaGGCCACATCAGGGACCTTCTGTGGACCTTCACGC +
Preference number: 6 (lower is better)
Translates to: PLSSSWVSSSCS*ATSGTFCGPSR
Trigger: GCGTGAAGGTCCACAGAAGGTCCCTGATGTGGCCCAGCTACAGGAGGAAGAAACCCAGCTTGAGGAGAGCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GAGGCCTTGCCCATGTCTCCATTGAGTACCTTGGTGTaGAGCAGGCAAGAGGTGAGGTGTTTGGGGCGGCCC +
Preference number: 6 (lower is better)
Translates to: EALPMSPLSTLV*SRQEVRCLGRP
Trigger: GGGCCGCCCCAAACACCTCACCTCTTGCCTGCTCAACACCAAGGTACTCAATGGAGACATGGGCAAGGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp TTCTGTCCCACTGGAGGGCCAGCAGGGGCCTCTTTGTaGGCCACTTTGTCTAAAGTGCAGCAGGCCTGGGTG +
Preference number: 6 (lower is better)
Translates to: FCPTGGPAGASL*ATLSKVQQAWV
Trigger: CACCCAGGCCTGCTGCACTTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTGGCCCTCCAGTGGGACAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp ACCTTCTGTCCCACTGGAGGGCCAGCAGGGGCCTCTTaGTTGGCCACTTTGTCTAAAGTGCAGCAGGCCTGG +
Preference number: 6 (lower is better)
Translates to: TFCPTGGPAGAS*LATLSKVQQAW
Trigger: CCAGGCCTGCTGCACTTTAGACAAAGTGGCCAACAAAGAGGCCCCTGCTGGCCCTCCAGTGGGACAGAAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp AGCAGACTTAGGCTTGCACGAACAGCCTTGGCTTTCTaGCTGTCACTTCTGGCAAGCTGGCCCCCGGGACGC +
Preference number: 6 (lower is better)
Translates to: SRLRLARTALAF*LSLLASWPPGR
Trigger: GCGTCCCGGGGGCCAGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAGCCTAAGTCTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GCTTTGGAGAAGCTCAGGGCCTCCTTGCGCTTGAACTaGGATTTGCTACCACTGGGGCTGGCCCCTGCACCT +
Preference number: 6 (lower is better)
Translates to: ALEKLRASLRLN*DLLPLGLAPAP
Trigger: AGGTGCAGGGGCCAGCCCCAGTGGTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCCTGAGCTTCTCCAAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp TCTACGGAGGGCAGCCGTTGCCTCCGAGAAAGCTCTTaGGCTTTGGAGAAGCTCAGGGCCTCCTTGCGCTTG +
Preference number: 6 (lower is better)
Translates to: STEGSRCLRESS*ALEKLRASLRL
Trigger: CAAGCGCAAGGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGAGGCAACGGCTGCCCTCCGTAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp CGAGAAAGCTCTTTGGCTTTGGAGAAGCTCAGGGCCTCCTTGCGCTaGAACTTGGATTTGCTACCACTGGGGCTGGCCCCTGCACCTGCA +
Preference number: 6 (lower is better)
Translates to: RESSLALEKLRASLR*NLDLLPLGLAPAPA
Trigger: TGCAGGTGCAGGGGCCAGCCCCAGTGGTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp TGCCTCCGAGAAAGCTCTTTGGCTTTGGAGAAGCTCAGGGCCTCCTaGCGCTTGAACTTGGATTTGCTACCACTGGGGCTGGCCCCTGCA +
Preference number: 6 (lower is better)
Translates to: CLRESSLALEKLRAS*RLNLDLLPLGLAPA
Trigger: TGCAGGGGCCAGCCCCAGTGGTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGAGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp GGCCGGTTTTCTACGGAGGGCAGCCGTTGCCTCCGAGAAAGCTCTTaGGCTTTGGAGAAGCTCAGGGCCTCCTTGCGCTTGAACTTGGAT +
Preference number: 6 (lower is better)
Translates to: GRFSTEGSRCLRESS*ALEKLRASLRLNLD
Trigger: ATCCAAGTTCAAGCGCAAGGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGAGGCAACGGCTGCCCTCCGTAGAAAACCGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 72 bp CTTTGGCTTTGGAGAAGCTCAGGGCCTCCTTGCGCTTaGACTTGGATTTGCTACCACTGGGGCTGGCCCCTG +
Preference number: 6 (lower is better)
Translates to: LWLWRSSGPPCA*TWICYHWGWPL
Trigger: CAGGGGCCAGCCCCAGTGGTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCCTGAGCTTCTCCAAAGCCAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CCCACGAACGGAGCCTTCTGGCCCACGACTAGGGCTTaGTTGCTGTATTTCAGCAGGTTCTTCATGGCCGAG +
Preference number: 6 (lower is better)
Translates to: PTNGAFWPTTRA*LLYFSRFFMAE
Trigger: CTCGGCCATGAAGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCGTGGGCCAGAAGGCTCCGTTCGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CTCCAAATTTCAGTGCTTGTAACCCCTCGAGTGGGCTaGGGTCTTCTGCCTTCCCTGGTGGGAGTCCTCCCT +
Preference number: 6 (lower is better)
Translates to: LQISVLVTPRVG*GLLPSLVGVLP
Trigger: AGGGAGGACTCCCACCAGGGAAGGCAGAAGACCCCAGCCCACTCGAGGGGTTACAAGCACTGAAATTTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GGGACTGAAAAGGGTGTCTCTGCTGGTGGCGGTTCCTaGCTCTGTACGCAGGCCAGTTTTCACCTTGCCCTT +
Preference number: 6 (lower is better)
Translates to: GTEKGVSAGGGS*LCTQASFHLAL
Trigger: AAGGGCAAGGTGAAAACTGGCCTGCGTACAGAGCCAGGAACCGCCACCAGCAGAGACACCCTTTTCAGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CTTCTGACTCCAGTAGGCACAGACCCGGGTACCAGGTaGAAGGTACCGACTGGACTGTGGCTGGACATCAAG +
Preference number: 6 (lower is better)
Translates to: LLTPVGTDPGTR*KVPTGLWLDIK
Trigger: CTTGATGTCCAGCCACAGTCCAGTCGGTACCTTCCACCTGGTACCCGGGTCTGTGCCTACTGGAGTCAGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp ACGGCACAGGCCTCTGCTACTTGGAAAGAGCGGCTCTaGTCAGCCAGGTGTCCCACAGAAGGCACAAAGGTG +
Preference number: 6 (lower is better)
Translates to: TAQASATWKERL*SARCPTEGTKV
Trigger: CACCTTTGTGCCTTCTGTGGGACACCTGGCTGACAAGAGCCGCTCTTTCCAAGTAGCAGAGGCCTGTGCCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp TGCATGGGAAACAGGGTGTCCCGGGCCCGCAGCTTCTaGGTGCTTCCGTTGAGCTGGAAGAGGTTCTGTAGT +
Preference number: 6 (lower is better)
Translates to: CMGNRVSRARSF*VLPLSWKRFCS
Trigger: ACTACAGAACCTCTTCCAGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCGGGACACCCTGTTTCCCATGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GAGGGCAGCCGTTGCCTCCGAGAAAGCTCTTTGGCTTaGGAGAAGCTCAGGGCCTCCTTGCGCTTGAACTTG +
Preference number: 6 (lower is better)
Translates to: EGSRCLRESSLA*EKLRASLRLNL
Trigger: CAAGTTCAAGCGCAAGGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGAGGCAACGGCTGCCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 72 bp CTCCAAGGAAGGGTGTGTAGGAACTCGCCAGGCTGCTaGAGGAGTCAGCTCGGAAGCTGTTACCAAACACGG +
Preference number: 6 (lower is better)
Translates to: LQGRVCRNSPGC*RSQLGSCYQTR
Trigger: CCGTGTTTGGTAACAGCTTCCGAGCTGACTCCTTCAGCAGCCTGGCGAGTTCCTACACACCCTTCCTTGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CGAACGGAGCCTTCTGGCCCACGACTAGGGCTTGGTTaGTGTATTTCAGCAGGTTCTTCATGGCCGAGACCT +
Preference number: 6 (lower is better)
Translates to: RTEPSGPRLGLG*CISAGSSWPRP
Trigger: AGGTCTCGGCCATGAAGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCGTGGGCCAGAAGGCTCCGTTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp ACATCCTCATCTTCTTGCATGGACAGCTCACTCTTCTaGCGCTGGGTCTCCAGGTCAGCCAGCTCACTGAGC +
Preference number: 6 (lower is better)
Translates to: TSSSSCMDSSLF*RWVSRSASSLS
Trigger: GCTCAGTGAGCTGGCTGACCTGGAGACCCAGCGGCAGAAGAGTGAGCTGTCCATGCAAGAAGATGAGGATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp TGCTGCAGGTTGAAGGCCAGCACATCCTCATCTTCTTaGATGGACAGCTCACTCTTCTGCCGCTGGGTCTCC +
Preference number: 6 (lower is better)
Translates to: CCRLKASTSSSS*MDSSLFCRWVS
Trigger: GGAGACCCAGCGGCAGAAGAGTGAGCTGTCCATGCAAGAAGATGAGGATGTGCTGGCCTTCAACCTGCAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CGGACTGCAGGCCAGTGTAAGGACTCTTTCCCAGTTTaGTTCGCTTCCTTGGGGGCTCATCACCTCGTAGCT +
Preference number: 6 (lower is better)
Translates to: RTAGQCKDSFPV*FASLGAHHLVA
Trigger: AGCTACGAGGTGATGAGCCCCCAAGGAAGCGAAGCAAACTGGGAAAGAGTCCTTACACTGGCCTGCAGTCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp CACGTCATTCTCATCTTCGTGGCAGGACTGGTACAGTaGGTTCTTCCCGTCACTCTGCCGCTTCCCCAGCTT +
Preference number: 6 (lower is better)
Translates to: HVILIFVAGLVQ*VLPVTLPLPQL
Trigger: AAGCTGGGGAAGCGGCAGAGTGACGGGAAGAACGCACTGTACCAGTCCTGCCACGAAGATGAGAATGACGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp CAGCACACAGCAGACTTAGGCTTGCACGAACAGCCTTaGCTTTCTTGCTGTCACTTCTGGCAAGCTGGCCCC +
Preference number: 6 (lower is better)
Translates to: QHTADLGLHEQP*LSCCHFWQAGP
Trigger: GGGGCCAGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAGCCTAAGTCTGCTGTGTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp ATGAGTCCTCATTGTCTGAGGAACAGAGGCTGGACGTaGACACGGAGCCTGAGGAAGAAGACGTGGACGAGC +
Preference number: 6 (lower is better)
Translates to: MSPHCLRNRGWT*TRSLRKKTWTS
Trigger: GCTCGTCCACGTCTTCTTCCTCAGGCTCCGTGTCCACGTCCAGCCTCTGTTCCTCAGACAATGAGGACTCAT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp ACGAACGGAGCCTTCTGGCCCACGACTAGGGCTTGGTaGCTGTATTTCAGCAGGTTCTTCATGGCCGAGACC +
Preference number: 6 (lower is better)
Translates to: TNGAFWPTTRAW*LYFSRFFMAET
Trigger: GGTCTCGGCCATGAAGAACCTGCTGAAATACAGCAACCAAGCCCTAGTCGTGGGCCAGAAGGCTCCGTTCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp CTGTTGTTGCTGCTGCTGCTGCAGTGCATAGAGCTCTaGCTGCCGAAGCAGCTGGGACCGAGAATACACAGG +
Preference number: 6 (lower is better)
Translates to: LLLLLLLQCIEL*LPKQLGPRIHR
Trigger: CCTGTGTATTCTCGGTCCCAGCTGCTTCGGCAGCAAGAGCTCTATGCACTGCAGCAGCAGCAGCAACAACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GTGCTGCAGGTTGAAGGCCAGCACATCCTCATCTTCTaGCATGGACAGCTCACTCTTCTGCCGCTGGGTCTC +
Preference number: 6 (lower is better)
Translates to: VLQVEGQHILIF*HGQLTLLPLGL
Trigger: GAGACCCAGCGGCAGAAGAGTGAGCTGTCCATGCAAGAAGATGAGGATGTGCTGGCCTTCAACCTGCAGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp ACCAACAGGGCTGGCGAGGGCTCTGTACACTGGATCTaGAAGTCCGGAGGCAGCAGCCTGATGTTAGAGACA +
Preference number: 6 (lower is better)
Translates to: TNRAGEGSVHWI*KSGGSSLMLET
Trigger: TGTCTCTAACATCAGGCTGCTGCCTCCGGACTTCAAGATCCAGTGTACAGAGCCCTCGCCAGCCCTGTTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp GAGATCTTTGGCCGGTTTTCTACGGAGGGCAGCCGTTaGCTCCGAGAAAGCTCTTTGGCTTTGGAGAAGCTC +
Preference number: 6 (lower is better)
Translates to: EIFGRFSTEGSR*LRESSLALEKL
Trigger: GAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGAGGCAACGGCTGCCCTCCGTAGAAAACCGGCCAAAGATCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp GGTCTTGGTGATTGGACCGGGCACAGTCCTGTGAAGTaGGCAACTCAAAGTAGCCACTTTTGTCCAGACCGC +
Preference number: 6 (lower is better)
Translates to: GLGDWTGHSPVK*ATQSSHFCPDR
Trigger: GCGGTCTGGACAAAAGTGGCTACTTTGAGTTGCCCACTTCACAGGACTGTGCCCGGTCCAATCACCAAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GAAGGGTGGATCCGGGCAAATTCCACGAGGTCTTTGTaGTCTTGTAACAGCAGCTCACGTCCAGGCAGACCC +
Preference number: 6 (lower is better)
Translates to: EGWIRANSTRSL*SCNSSSRPGRP
Trigger: GGGTCTGCCTGGACGTGAGCTGCTGTTACAAGACAACAAAGACCTCGTGGAATTTGCCCGGATCCACCCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp CTGCTGTTGCTGCTGTTGTTGCTGCTGCTGCTGTTGTaGCTGCTGCTGCTGCAGTGCATAGAGCTCTTGCTG +
Preference number: 6 (lower is better)
Translates to: LLLLLLLLLLLL*LLLLQCIELLL
Trigger: CAGCAAGAGCTCTATGCACTGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACAACAGCAGCAACAGCAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp TCAGGCCGAGTCCCTGGGGTAGTGGTTTGCATAGTTTaGGGGTCTTGGAGGTCAGAGGAGTGCACGTCTGAA +
Preference number: 6 (lower is better)
Translates to: SGRVPGVVVCIV*GSWRSEECTSE
Trigger: TTCAGACGTGCACTCCTCTGACCTCCAAGACCCCAAAACTATGCAAACCACTACCCCAGGGACTCGGCCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GGGCTGTGGTGCCCCCTGATCTACAGTCCTCTCATTTaGCATCCCTCCCTGAGTAGAATTCGTCTGGCCAGT +
Preference number: 6 (lower is better)
Translates to: GLWCPLIYSPLI*HPSLSRIRLAS
Trigger: ACTGGCCAGACGAATTCTACTCAGGGAGGGATGCAAAATGAGAGGACTGTAGATCAGGGGGCACCACAGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp TCAGCACACAGCAGACTTAGGCTTGCACGAACAGCCTaGGCTTTCTTGCTGTCACTTCTGGCAAGCTGGCCC +
Preference number: 6 (lower is better)
Translates to: SAHSRLRLARTA*AFLLSLLASWP
Trigger: GGGCCAGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAGCCTAAGTCTGCTGTGTGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS TCA 72 bp CAGTGGGTCTTGGTGATTGGACCGGGCACAGTCCTGTaGAGTGGGCAACTCAAAGTAGCCACTTTTGTCCAG +
Preference number: 6 (lower is better)
Translates to: QWVLVIGPGTVL*SGQLKVATFVQ
Trigger: CTGGACAAAAGTGGCTACTTTGAGTTGCCCACTTCACAGGACTGTGCCCGGTCCAATCACCAAGACCCACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp TCCGGAGGCAGCAGCCTGATGTTAGAGACAGCTATGTaGCCTGTGTCTCCGTCATCGAACTCTACCAACACT +
Preference number: 6 (lower is better)
Translates to: SGGSSLMLETAM*PVSPSSNSTNT
Trigger: AGTGTTGGTAGAGTTCGATGACGGAGACACAGGCCACATAGCTGTCTCTAACATCAGGCTGCTGCCTCCGGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp CAGTGTAAGGACTCTTTCCCAGTTTGCTTCGCTTCCTaGGGGGCTCATCACCTCGTAGCTCAGCACACAGCA +
Preference number: 6 (lower is better)
Translates to: QCKDSFPVCFAS*GAHHLVAQHTA
Trigger: TGCTGTGTGCTGAGCTACGAGGTGATGAGCCCCCAAGGAAGCGAAGCAAACTGGGAAAGAGTCCTTACACTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp TTGCTAAGAGGTCGCCCCAGCTTGGGTCCGAAGTCCTaGTCGCTCATGAGCAGGGCCTTGCAGTTTTTGTTT +
Preference number: 6 (lower is better)
Translates to: LLRGRPSLGPKS*SLMSRALQFLF
Trigger: AAACAAAAACTGCAAGGCCCTGCTCATGAGCGACAAGGACTTCGGACCCAAGCTGGGGCGACCTCTTAGCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp TTTTCTACGGAGGGCAGCCGTTGCCTCCGAGAAAGCTCTTTGGCTTaGGAGAAGCTCAGGGCCTCCTTGCGCTTGAACTTGGATTTGCTA +
Preference number: 6 (lower is better)
Translates to: FSTEGSRCLRESSLA*EKLRASLRLNLDLL
Trigger: TAGCAAATCCAAGTTCAAGCGCAAGGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGAGGCAACGGCTGCCCTCCGTAGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CCA 72 bp TATAAGATGAGTCCTCATTGTCTGAGGAACAGAGGCTaGACGTGGACACGGAGCCTGAGGAAGAAGACGTGG +
Preference number: 6 (lower is better)
Translates to: YKMSPHCLRNRG*TWTRSLRKKTW
Trigger: CCACGTCTTCTTCCTCAGGCTCCGTGTCCACGTCCAGCCTCTGTTCCTCAGACAATGAGGACTCATCTTATA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp CTTGAAGGGTGGATCCGGGCAAATTCCACGAGGTCTTaGTTGTCTTGTAACAGCAGCTCACGTCCAGGCAGA +
Preference number: 6 (lower is better)
Translates to: LEGWIRANSTRS*LSCNSSSRPGR
Trigger: TCTGCCTGGACGTGAGCTGCTGTTACAAGACAACAAAGACCTCGTGGAATTTGCCCGGATCCACCCTTCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 90 bp GTGGGGGACTTGGCACCTGAGGTTAGGAGGTCGACTTTGCCAGCTTaGTCTTTGCTGCCAGATTTCTTCCCAGGGGTCTTAGAAGTTTCA +
Preference number: 6 (lower is better)
Translates to: VGDLAPEVRRSTLPA*SLLPDFFPGVLEVS
Trigger: TGAAACTTCTAAGACCCCTGGGAAGAAATCTGGCAGCAAAGACAAAGCTGGCAAAGTCGACCTCCTAACCTCAGGTGCCAAGTCCCCCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS GCA 72 bp GGTCTTCTTCATCGCTTGAAGCACCTCGAACCACATTaGCTGGATATAGACACCGGGACTTCTGACTCCAGT +
Preference number: 6 (lower is better)
Translates to: GLLHRLKHLEPH*LDIDTGTSDSS
Trigger: ACTGGAGTCAGAAGTCCCGGTGTCTATATCCAGGCAATGTGGTTCGAGGTGCTTCAAGCGATGAAGAAGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8
CDS CAA 72 bp GTAGAAGTTATCTTTTTGGGTTCCATAGAAACGATGTaGCCCATAGAGAACATTGCTGTTTCCATGGTGATC +
Preference number: 6 (lower is better)
Translates to: VEVIFLGSIETM*PIENIAVSMVI
Trigger: GATCACCATGGAAACAGCAATGTTCTCTATGGGCAACATCGTTTCTATGGAACCCAAAAAGATAACTTCTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044985.14
ENSMUST00000118987.2
ENSMUST00000122148.8