RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BAG6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024392

Ensembl transcript IDs: ENSMUST00000025250.14, ENSMUST00000166426.9, ENSMUST00000172571.8, ENSMUST00000172993.2, ENSMUST00000173491.8, ENSMUST00000173535.8, ENSMUST00000173550.8, ENSMUST00000173952.8, ENSMUST00000174281.9, ENSMUST00000174478.8

Found 113 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp ACTCGGCTCCATGGCCGACAGCTCTGGGAGGCTGGACGGGCTCGCTaGCCGCCCCCGCCTTCCGCCTCCGCCTCTCCTCGGTATTCCAGC +
Preference number: 5 (lower is better)
Translates to: TRLHGRQLWEAGRAR*PPPPSASASPRYSS
Trigger: GCTGGAATACCGAGGAGAGGCGGAGGCGGAAGGCGGGGGCGGTCAGCGAGCCCGTCCAGCCTCCCAGAGCTGTCGGCCATGGAGCCGAGT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000173535.8
ENSMUST00000173952.8
CDS GCA 90 bp CCGAGCCTGTGGAGGAGTTGGCCGGGCAATCACCACCCGAGTTGGTaGTGTTGGGAAGCCGGGCACCTGCTGTCCTGCGGCCGCGGAGGC +
Preference number: 5 (lower is better)
Translates to: PSLWRSWPGNHHPSW*CWEAGHLLSCGRGG
Trigger: GCCTCCGCGGCCGCAGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGGCTCGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS GCA 90 bp GGTGGAAGAGGGAGGCAGGGATGTGGCCTGGGCAGAACCTGGGGTTaGTGCCTCCGCACCAGGAGCTGGTGGAGGCCGAGCCCCATTGCC +
Preference number: 5 (lower is better)
Translates to: GGRGRQGCGLGRTWG*CLRTRSWWRPSPIA
Trigger: GGCAATGGGGCTCGGCCTCCACCAGCTCCTGGTGCGGAGGCAGCAACCCCAGGTTCTGCCCAGGCCACATCCCTGCCTCCCTCTTCCACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp AGGCCGAGCCTGTGGAGGAGTTGGCCGGGCAATCACCACCCGAGTTaGTGCTGTTGGGAAGCCGGGCACCTGCTGTCCTGCGGCCGCGGA +
Preference number: 5 (lower is better)
Translates to: RPSLWRSWPGNHHPS*CCWEAGHLLSCGRG
Trigger: TCCGCGGCCGCAGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGGCTCGGCCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp CCCAGCCCAGCGCCCAGAGCTCCAGAGACTGGAGGTCCCCCAGGATaGGAAGGCCGAGCCTGTGGAGGAGTTGGCCGGGCAATCACCACC +
Preference number: 5 (lower is better)
Translates to: PSPAPRAPETGGPPG*EGRACGGVGRAITT
Trigger: GGTGGTGATTGCCCGGCCAACTCCTCCACAGGCTCGGCCTTCCCATCCTGGGGGACCTCCAGTCTCTGGAGCTCTGGGCGCTGGGCTGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS GCA 90 bp GGAAGAGGGAGGCAGGGATGTGGCCTGGGCAGAACCTGGGGTTGCTaGCTCCGCACCAGGAGCTGGTGGAGGCCGAGCCCCATTGCCTGT +
Preference number: 5 (lower is better)
Translates to: GRGRQGCGLGRTWGC*LRTRSWWRPSPIAC
Trigger: ACAGGCAATGGGGCTCGGCCTCCACCAGCTCCTGGTGCGGAGGCAGCAACCCCAGGTTCTGCCCAGGCCACATCCCTGCCTCCCTCTTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp CTGTGGAGGAGTTGGCCGGGCAATCACCACCCGAGTTGGTGCTGTTaGGAAGCCGGGCACCTGCTGTCCTGCGGCCGCGGAGGCAACAGC +
Preference number: 5 (lower is better)
Translates to: LWRSWPGNHHPSWCC*EAGHLLSCGRGGNS
Trigger: GCTGTTGCCTCCGCGGCCGCAGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp AGGCCGAGCCTGTGGAGGAGTTGGCCGGGCAATCACCACCCGAGTTaGTGCTGTTGGGAAGCCGGGCACCTGCTGTCCCAGGGTCTGTCC +
Preference number: 5 (lower is better)
Translates to: RPSLWRSWPGNHHPS*CCWEAGHLLSQGLS
Trigger: GGACAGACCCTGGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGGCTCGGCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS CCA 90 bp GACTGGAGGTCCCCCAGGATGGGAAGGCCGAGCCTGTGGAGGAGTTaGCCGGGCAATCACCACCCGAGTTGGTGCTGTTGGGAAGCCGGG +
Preference number: 5 (lower is better)
Translates to: DWRSPRMGRPSLWRS*PGNHHPSWCCWEAG
Trigger: CCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGGCTCGGCCTTCCCATCCTGGGGGACCTCCAGTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS GCA 90 bp CCGAGCCTGTGGAGGAGTTGGCCGGGCAATCACCACCCGAGTTGGTaGTGTTGGGAAGCCGGGCACCTGCTGTCCCAGGGTCTGTCCATG +
Preference number: 5 (lower is better)
Translates to: PSLWRSWPGNHHPSW*CWEAGHLLSQGLSM
Trigger: CATGGACAGACCCTGGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGGCTCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS CCA 90 bp TGTGGCCTGGGCAGAACCTGGGGTTGCTGCCTCCGCACCAGGAGCTaGTGGAGGCCGAGCCCCATTGCCTGTCATGGTCACAGTAGTCCC +
Preference number: 5 (lower is better)
Translates to: CGLGRTWGCCLRTRS*WRPSPIACHGHSSP
Trigger: GGGACTACTGTGACCATGACAGGCAATGGGGCTCGGCCTCCACCAGCTCCTGGTGCGGAGGCAGCAACCCCAGGTTCTGCCCAGGCCACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp GGGCACCTGCTGTCCCAGGGTCTGTCCATGACCAGGAGGTCCCAGTaGACCAGTGGGAGCACTTGGCACACCACCAGGCTGTGCTCCAGA +
Preference number: 5 (lower is better)
Translates to: GHLLSQGLSMTRRSQ*TSGSTWHTTRLCSR
Trigger: TCTGGAGCACAGCCTGGTGGTGTGCCAAGTGCTCCCACTGGTCCACTGGGACCTCCTGGTCATGGACAGACCCTGGGACAGCAGGTGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS CCA 90 bp CTGTGGAGGAGTTGGCCGGGCAATCACCACCCGAGTTGGTGCTGTTaGGAAGCCGGGCACCTGCTGTCCCAGGGTCTGTCCATGACCAGG +
Preference number: 5 (lower is better)
Translates to: LWRSWPGNHHPSWCC*EAGHLLSQGLSMTR
Trigger: CCTGGTCATGGACAGACCCTGGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS CCA 90 bp AGCTCCAGAGACTGGAGGTCCCCCAGGATGGGAAGGCCGAGCCTGTaGAGGAGTTGGCCGGGCAATCACCACCCGAGTTGGTGCTGTTGG +
Preference number: 5 (lower is better)
Translates to: SSRDWRSPRMGRPSL*RSWPGNHHPSWCCW
Trigger: CCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGGCTCGGCCTTCCCATCCTGGGGGACCTCCAGTCTCTGGAGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp CCGGCTGCCTTAGCTGCCCGGCTCACTGCCTCTGAGAGTAGCAGCTaGGGGCCCTCACCCTGCATTGTCTTTCGTCTCTTGGCAGGCATG +
Preference number: 5 (lower is better)
Translates to: PAALAARLTASESSS*GPSPCIVFRLLAGM
Trigger: CATGCCTGCCAAGAGACGAAAGACAATGCAGGGTGAGGGCCCCCAGCTGCTACTCTCAGAGGCAGTGAGCCGGGCAGCTAAGGCAGCCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
CDS CCA 90 bp GATGAGGGTGGAGCCCAGGGTCTGTCCATGACCAGGAGGTCCCAGTaGACCAGTGGGAGCACTTGGCACACCACCAGGCTGTGCTCCAGA +
Preference number: 5 (lower is better)
Translates to: DEGGAQGLSMTRRSQ*TSGSTWHTTRLCSR
Trigger: TCTGGAGCACAGCCTGGTGGTGTGCCAAGTGCTCCCACTGGTCCACTGGGACCTCCTGGTCATGGACAGACCCTGGGCTCCACCCTCATC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp CTGGCCCTGGTGGGGGAGCTCCTTCAGTTGATGAATCAACAGTGGTaGAAGAGGGAGGCAGGGATGTGGCCTGGGCAGAACCTGGGGTTG +
Preference number: 5 (lower is better)
Translates to: LALVGELLQLMNQQW*KREAGMWPGQNLGL
Trigger: CAACCCCAGGTTCTGCCCAGGCCACATCCCTGCCTCCCTCTTCCACCACTGTTGATTCATCAACTGAAGGAGCTCCCCCACCAGGGCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS TCA 90 bp GGCCCTCACCCTGCATTGTCTTTCGTCTCTTGGCAGGCATGCCACTaGGGTAGGCATCACTCAGGGGCGGCTGAGGTTTCACCTTCCGCT +
Preference number: 5 (lower is better)
Translates to: GPHPALSFVSWQACH*GRHHSGAAEVSPSA
Trigger: AGCGGAAGGTGAAACCTCAGCCGCCCCTGAGTGATGCCTACCTCAGTGGCATGCCTGCCAAGAGACGAAAGACAATGCAGGGTGAGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
CDS CCA 90 bp ACCTCTGGTCCTCCTCACGGCCCTCATGGTTGTTGTTGTAGTCTGTaGTGGCAGCAGCGCCCAGGACCTCGCAGTAGCGCTGTAGGAAAG +
Preference number: 5 (lower is better)
Translates to: TSGPPHGPHGCCCSL*WQQRPGPRSSAVGK
Trigger: CTTTCCTACAGCGCTACTGCGAGGTCCTGGGCGCTGCTGCCACCACAGACTACAACAACAACCATGAGGGCCGTGAGGAGGACCAGAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp GCTGTCCCAGGGTCTGTCCATGACCAGGAGGTCCCAGTGGACCAGTaGGAGCACTTGGCACACCACCAGGCTGTGCTCCAGAATCTTGAA +
Preference number: 5 (lower is better)
Translates to: AVPGSVHDQEVPVDQ*EHLAHHQAVLQNLE
Trigger: TTCAAGATTCTGGAGCACAGCCTGGTGGTGTGCCAAGTGCTCCCACTGGTCCACTGGGACCTCCTGGTCATGGACAGACCCTGGGACAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS CCA 90 bp CCATCAGCCCCAGGCTCAAAGATGTTGCTGGATCCACTGAGGCGTTaGATGAAGGCAGCGATACTCTCACTGCTGCCAGCTCGAGCCCCC +
Preference number: 5 (lower is better)
Translates to: PSAPGSKMLLDPLRR*MKAAILSLLPARAP
Trigger: GGGGGCTCGAGCTGGCAGCAGTGAGAGTATCGCTGCCTTCATCCAACGCCTCAGTGGATCCAGCAACATCTTTGAGCCTGGGGCTGATGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp CTCCTGGCCACCCAGGTAGTGCTGGTGGAAGAAAGATCGCAGCTGTaGCTGGAGCCGCTGCAGTGGCTGGAAATGGCCATGGAGAAGCAT +
Preference number: 5 (lower is better)
Translates to: LLATQVVLVEERSQL*LEPLQWLEMAMEKH
Trigger: ATGCTTCTCCATGGCCATTTCCAGCCACTGCAGCGGCTCCAGCCACAGCTGCGATCTTTCTTCCACCAGCACTACCTGGGTGGCCAGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp TGGAGCCCAGGGTCTGTCCATGACCAGGAGGTCCCAGTGGACCAGTaGGAGCACTTGGCACACCACCAGGCTGTGCTCCAGAATCTTGAA +
Preference number: 5 (lower is better)
Translates to: WSPGSVHDQEVPVDQ*EHLAHHQAVLQNLE
Trigger: TTCAAGATTCTGGAGCACAGCCTGGTGGTGTGCCAAGTGCTCCCACTGGTCCACTGGGACCTCCTGGTCATGGACAGACCCTGGGCTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS TCA 90 bp CTGCATAAGAAGTTGCCCCACAAGGCCGCTCACCATCTGGGCCAATaGAGTGTTTGTACCCAGCCCAGCGCCCTGCAGAGCTCCAGAGAC +
Preference number: 5 (lower is better)
Translates to: LHKKLPHKAAHHLGQ*SVCTQPSALQSSRD
Trigger: GTCTCTGGAGCTCTGCAGGGCGCTGGGCTGGGTACAAACACTTCATTGGCCCAGATGGTGAGCGGCCTTGTGGGGCAACTTCTTATGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS TCA 90 bp CTGAGGATGGCGTCGGGACCCACAGGCATGTGCTCCAAGACCACCTaGAGCCTCAGTCCCATCATGGTTGTCAGCCAGCTCACCAAGGAT +
Preference number: 5 (lower is better)
Translates to: LRMASGPTGMCSKTT*SLSPIMVVSQLTKD
Trigger: ATCCTTGGTGAGCTGGCTGACAACCATGATGGGACTGAGGCTTCAGGTGGTCTTGGAGCACATGCCTGTGGGTCCCGACGCCATCCTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS TCA 90 bp CTGCATAAGAAGTTGCCCCACAAGGCCGCTCACCATCTGGGCCAATaGAGTGTTTGTACCCAGCCCAGCGCCCAGAGCTCCAGAGACTGG +
Preference number: 5 (lower is better)
Translates to: LHKKLPHKAAHHLGQ*SVCTQPSAQSSRDW
Trigger: CCAGTCTCTGGAGCTCTGGGCGCTGGGCTGGGTACAAACACTTCATTGGCCCAGATGGTGAGCGGCCTTGTGGGGCAACTTCTTATGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp GGGCGGGCCTCGGGACATGGCTTCTTCTGCTGTTGTTCCAGGGGCTaGGGAAGCATTCTCTCTCTGAGGTTCAGGGGAAGTTCTTTCTGC +
Preference number: 5 (lower is better)
Translates to: GRASGHGFFCCCSRG*GSILSLRFRGSSFC
Trigger: GCAGAAAGAACTTCCCCTGAACCTCAGAGAGAGAATGCTTCCCCAGCCCCTGGAACAACAGCAGAAGAAGCCATGTCCCGAGGCCCGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000172993.2
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp AGAACAGGCTGCATAAGAAGTTGCCCCACAAGGCCGCTCACCATCTaGGCCAATGAAGTGTTTGTACCCAGCCCAGCGCCCTGCAGAGCT +
Preference number: 5 (lower is better)
Translates to: RTGCIRSCPTRPLTI*ANEVFVPSPAPCRA
Trigger: AGCTCTGCAGGGCGCTGGGCTGGGTACAAACACTTCATTGGCCCAGATGGTGAGCGGCCTTGTGGGGCAACTTCTTATGCAGCCTGTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS CCA 90 bp GATCGCAGCTGTGGCTGGAGCCGCTGCAGTGGCTGGAAATGGCCATaGAGAAGCATCACCACATCCACCATGGAGAAATTCTGGCACAGG +
Preference number: 5 (lower is better)
Translates to: DRSCGWSRCSGWKWP*RSITTSTMEKFWHR
Trigger: CCTGTGCCAGAATTTCTCCATGGTGGATGTGGTGATGCTTCTCCATGGCCATTTCCAGCCACTGCAGCGGCTCCAGCCACAGCTGCGATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp CCACAGGCATGTGCTCCAAGACCACCTGAAGCCTCAGTCCCATCATaGTTGTCAGCCAGCTCACCAAGGATGGATTCACCCCGCGAGACA +
Preference number: 5 (lower is better)
Translates to: PQACAPRPPEASVPS*LSASSPRMDSPRET
Trigger: TGTCTCGCGGGGTGAATCCATCCTTGGTGAGCTGGCTGACAACCATGATGGGACTGAGGCTTCAGGTGGTCTTGGAGCACATGCCTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp AGAACAGGCTGCATAAGAAGTTGCCCCACAAGGCCGCTCACCATCTaGGCCAATGAAGTGTTTGTACCCAGCCCAGCGCCCAGAGCTCCA +
Preference number: 5 (lower is better)
Translates to: RTGCIRSCPTRPLTI*ANEVFVPSPAPRAP
Trigger: TGGAGCTCTGGGCGCTGGGCTGGGTACAAACACTTCATTGGCCCAGATGGTGAGCGGCCTTGTGGGGCAACTTCTTATGCAGCCTGTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS TCA 90 bp CCACGAAAGTGTTGCCCAGTAGCCGCAGGCTCTCCCCAACCAAGTTaGTCAACCTCTGGTCCTCCTCACGGCCCTCATGGTTGTTGTTGT +
Preference number: 5 (lower is better)
Translates to: PRKCCPVAAGSPQPS*STSGPPHGPHGCCC
Trigger: ACAACAACAACCATGAGGGCCGTGAGGAGGACCAGAGGTTGATCAACTTGGTTGGGGAGAGCCTGCGGCTACTGGGCAACACTTTCGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS TCA 90 bp TTTGGATATCAGACCGGAGCTTTCGTCTCTTGGCAGGCATGCCACTaGGGTAGGCATCACTCAGGGGCGGCTGAGGTTTCACCTTCCGCT +
Preference number: 5 (lower is better)
Translates to: FGYQTGAFVSWQACH*GRHHSGAAEVSPSA
Trigger: AGCGGAAGGTGAAACCTCAGCCGCCCCTGAGTGATGCCTACCTCAGTGGCATGCCTGCCAAGAGACGAAAGCTCCGGTCTGATATCCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000172571.8
ENSMUST00000172993.2
ENSMUST00000173550.8
CDS CCA 90 bp GGTCTGTCCATGACCAGGAGGTCCCAGTGGACCAGTGGGAGCACTTaGCACACCACCAGGCTGTGCTCCAGAATCTTGAATGTTCATGTG +
Preference number: 5 (lower is better)
Translates to: GLSMTRRSQWTSGST*HTTRLCSRILNVHV
Trigger: CACATGAACATTCAAGATTCTGGAGCACAGCCTGGTGGTGTGCCAAGTGCTCCCACTGGTCCACTGGGACCTCCTGGTCATGGACAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp CTGAAGCCTCAGTCCCATCATGGTTGTCAGCCAGCTCACCAAGGATaGATTCACCCCGCGAGACATGCGGCGAATTCGACCATTGATGAC +
Preference number: 5 (lower is better)
Translates to: LKPQSHHGCQPAHQG*IHPARHAANSTIDD
Trigger: GTCATCAATGGTCGAATTCGCCGCATGTCTCGCGGGGTGAATCCATCCTTGGTGAGCTGGCTGACAACCATGATGGGACTGAGGCTTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS TCA 90 bp CACTCCATCCGGGACAGTAAGGTCTGTATATCCCTAATCATGTGCTaGGCCATCACCAGCCGGACCCGGGGCTCACTAGGAAGATTGAAG +
Preference number: 5 (lower is better)
Translates to: HSIRDSKVCISLIMC*AITSRTRGSLGRLK
Trigger: CTTCAATCTTCCTAGTGAGCCCCGGGTCCGGCTGGTGATGGCTCAGCACATGATTAGGGATATACAGACCTTACTGTCCCGGATGGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000173952.8
CDS GCA 90 bp GGCTGGGGAAGCATTCTCTCTCTGAGGTTCAGGGGAAGTTCTTTCTaGTCCCTGAACTTCCATCGGCTCTTCAGGAAGTGTCTGAGGAGG +
Preference number: 5 (lower is better)
Translates to: GWGSILSLRFRGSSF*SLNFHRLFRKCLRR
Trigger: CCTCCTCAGACACTTCCTGAAGAGCCGATGGAAGTTCAGGGAGCAGAAAGAACTTCCCCTGAACCTCAGAGAGAGAATGCTTCCCCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp AAGAAAGATCGCAGCTGTGGCTGGAGCCGCTGCAGTGGCTGGAAATaGCCATGGAGAAGCATCACCACATCCACCATGGAGAAATTCTGG +
Preference number: 5 (lower is better)
Translates to: KKDRSCGWSRCSGWK*PWRSITTSTMEKFW
Trigger: CCAGAATTTCTCCATGGTGGATGTGGTGATGCTTCTCCATGGCCATTTCCAGCCACTGCAGCGGCTCCAGCCACAGCTGCGATCTTTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS TCA 90 bp AACTCCTTTACATTCATCTGGGCCCCCACAATAAAAGTCCGAGTCTaGGAGTCCAGGGTCTTCACCAGTACCTCCAGGCTGTCAGGCTCC +
Preference number: 5 (lower is better)
Translates to: NSFTFIWAPTIKVRV*ESRVFTSTSRLSGS
Trigger: GGAGCCTGACAGCCTGGAGGTACTGGTGAAGACCCTGGACTCTCAGACTCGGACTTTTATTGTGGGGGCCCAGATGAATGTAAAGGAGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173491.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000173952.8
ENSMUST00000174281.9
ENSMUST00000174478.8
CDS CCA 90 bp CTGGAGTCTGGGTTGGGGGACGTTCCTCCATTTCTTCTGACTCCATaGGCTCTCGAGGAGGAGCTTCACTTTCGACTGGTTCTGATGTTT +
Preference number: 5 (lower is better)
Translates to: LESGLGDVPPFLLTP*ALEEELHFRLVLMF
Trigger: AAACATCAGAACCAGTCGAAAGTGAAGCTCCTCCTCGAGAGCCCATGGAGTCAGAAGAAATGGAGGAACGTCCCCCAACCCAGACTCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp AAATGGCCATGGAGAAGCATCACCACATCCACCATGGAGAAATTCTaGCACAGGAGAGAGAGCAGAGCTCCGAAGAATCCAAGGGCGCCA +
Preference number: 5 (lower is better)
Translates to: KWPWRSITTSTMEKF*HRRESRAPKNPRAP
Trigger: TGGCGCCCTTGGATTCTTCGGAGCTCTGCTCTCTCTCCTGTGCCAGAATTTCTCCATGGTGGATGTGGTGATGCTTCTCCATGGCCATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 90 bp GCAGTGGCTGGAAATGGCCATGGAGAAGCATCACCACATCCACCATaGAGAAATTCTGGCACAGGAGAGAGAGCAGAGCTCCGAAGAATC +
Preference number: 5 (lower is better)
Translates to: AVAGNGHGEASPHPP*RNSGTGERAELRRI
Trigger: GATTCTTCGGAGCTCTGCTCTCTCTCCTGTGCCAGAATTTCTCCATGGTGGATGTGGTGATGCTTCTCCATGGCCATTTCCAGCCACTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS TCA 90 bp TCTTGGAGAAATTCTAAATTTGTCCGGATGATATCCACACCTGGCTaGACCTGTACCAAAGAAAAACTCTCCCTTACATACTCTTCCAGC +
Preference number: 5 (lower is better)
Translates to: SWRNSKFVRMISTPG*TCTKEKLSLTYSSS
Trigger: GCTGGAAGAGTATGTAAGGGAGAGTTTTTCTTTGGTACAGGTTCAGCCAGGTGTGGATATCATCCGGACAAATTTAGAATTTCTCCAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp GGAGCACCTCCACGTGCTCTGCGGGGGAAGGGTGGCTaGGCGCGGGAGCTGGGCCTGCGGGAGCTGGGCCTG +
Preference number: 6 (lower is better)
Translates to: GAPPRALRGKGG*ARELGLRELGL
Trigger: CAGGCCCAGCTCCCGCAGGCCCAGCTCCCGCGCCCAGCCACCCTTCCCCCGCAGAGCACGTGGAGGTGCTCC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000172571.8
CDS GCA 72 bp AGGCAGGGATGTGGCCTGGGCAGAACCTGGGGTTGCTaGCTCCGCACCAGGAGCTGGTGGAGGCCGAGCCCC +
Preference number: 6 (lower is better)
Translates to: RQGCGLGRTWGC*LRTRSWWRPSP
Trigger: GGGGCTCGGCCTCCACCAGCTCCTGGTGCGGAGGCAGCAACCCCAGGTTCTGCCCAGGCCACATCCCTGCCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp CTCTGCGGGGGAAGGGTGGTTGGGTGCATTTGTCTCTaGCGCGGGAGCTGGGCCTGCGGGAGCTGGGCCTGC +
Preference number: 6 (lower is better)
Translates to: LCGGRVVGCICL*RGSWACGSWAC
Trigger: GCAGGCCCAGCTCCCGCAGGCCCAGCTCCCGCGCCAGAGACAAATGCACCCAACCACCCTTCCCCCGCAGAG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp TATCACTCGGCTCCATGGCCGACAGCTCTGGGAGGCTaGACGGGCTCGCTGACCGCCCCCGCCTTCCGCCTC +
Preference number: 6 (lower is better)
Translates to: YHSAPWPTALGG*TGSLTAPAFRL
Trigger: GAGGCGGAAGGCGGGGGCGGTCAGCGAGCCCGTCCAGCCTCCCAGAGCTGTCGGCCATGGAGCCGAGTGATA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000173535.8
ENSMUST00000173952.8
CDS CAA 90 bp AAGGCCGAGCCTGTGGAGGAGTTGGCCGGGCAATCACCACCCGAGTaGGTGCTGTTGGGAAGCCGGGCACCTGCTGTCCTGCGGCCGCGG +
Preference number: 6 (lower is better)
Translates to: KAEPVEELAGQSPPE*VLLGSRAPAVLRPR
Trigger: CCGCGGCCGCAGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGGCTCGGCCTT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 72 bp GAGTTGGCCGGGCAATCACCACCCGAGTTGGTGCTGTaGGGAAGCCGGGCACCTGCTGTCCTGCGGCCGCGG +
Preference number: 6 (lower is better)
Translates to: ELAGQSPPELVL*GSRAPAVLRPR
Trigger: CCGCGGCCGCAGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 90 bp CCTGTGGAGGAGTTGGCCGGGCAATCACCACCCGAGTTGGTGCTGTaGGGAAGCCGGGCACCTGCTGTCCTGCGGCCGCGGAGGCAACAG +
Preference number: 6 (lower is better)
Translates to: PVEELAGQSPPELVL*GSRAPAVLRPRRQQ
Trigger: CTGTTGCCTCCGCGGCCGCAGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS GCA 72 bp GGGCACCTGCTGTCCTGCGGCCGCGGAGGCAACAGCTaGCACCATGGCCTGATGAGTGATCTGGTGGGCGAC +
Preference number: 6 (lower is better)
Translates to: GHLLSCGRGGNS*HHGLMSDLVGD
Trigger: GTCGCCCACCAGATCACTCATCAGGCCATGGTGGCAGCTGTTGCCTCCGCGGCCGCAGGACAGCAGGTGCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp GGAGCACCTCCACGTGCTCTGCGGGGGAAGGGTGGTTaGGTGCATTTGTCTCTGGCGCGGGAGCTGGGCCTG +
Preference number: 6 (lower is better)
Translates to: GAPPRALRGKGG*VHLSLARELGL
Trigger: CAGGCCCAGCTCCCGCGCCAGAGACAAATGCACCCAACCACCCTTCCCCCGCAGAGCACGTGGAGGTGCTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp AGTTGGCCGGGCAATCACCACCCGAGTTGGTGCTGTTaGGAAGCCGGGCACCTGCTGTCCTGCGGCCGCGGA +
Preference number: 6 (lower is better)
Translates to: SWPGNHHPSWCC*EAGHLLSCGRG
Trigger: TCCGCGGCCGCAGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS GCA 72 bp TGGAGGAGTTGGCCGGGCAATCACCACCCGAGTTGGTaGTGTTGGGAAGCCGGGCACCTGCTGTCCTGCGGC +
Preference number: 6 (lower is better)
Translates to: WRSWPGNHHPSW*CWEAGHLLSCG
Trigger: GCCGCAGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp TCCTGGAGCACCTCCACGTGCTCTGCGGGGGAAGGGTaGTTGGGTGCATTTGTCTCTGGCGCGGGAGCTGGG +
Preference number: 6 (lower is better)
Translates to: SWSTSTCSAGEG*LGAFVSGAGAG
Trigger: CCCAGCTCCCGCGCCAGAGACAAATGCACCCAACCACCCTTCCCCCGCAGAGCACGTGGAGGTGCTCCAGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp GGCAGAACCTGGGGTTGCTGCCTCCGCACCAGGAGCTaGTGGAGGCCGAGCCCCATTGCCTGTCATGGTCAC +
Preference number: 6 (lower is better)
Translates to: GRTWGCCLRTRS*WRPSPIACHGH
Trigger: GTGACCATGACAGGCAATGGGGCTCGGCCTCCACCAGCTCCTGGTGCGGAGGCAGCAACCCCAGGTTCTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp GACTGGAGGTCCCCCAGGATGGGAAGGCCGAGCCTGTaGAGGAGTTGGCCGGGCAATCACCACCCGAGTTGG +
Preference number: 6 (lower is better)
Translates to: DWRSPRMGRPSL*RSWPGNHHPSW
Trigger: CCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGGCTCGGCCTTCCCATCCTGGGGGACCTCCAGTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp GTTTGTACCCAGCCCAGCGCCCAGAGCTCCAGAGACTaGAGGTCCCCCAGGATGGGAAGGCCGAGCCTGTGG +
Preference number: 6 (lower is better)
Translates to: VCTQPSAQSSRD*RSPRMGRPSLW
Trigger: CCACAGGCTCGGCCTTCCCATCCTGGGGGACCTCCAGTCTCTGGAGCTCTGGGCGCTGGGCTGGGTACAAAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 90 bp AAGGCCGAGCCTGTGGAGGAGTTGGCCGGGCAATCACCACCCGAGTaGGTGCTGTTGGGAAGCCGGGCACCTGCTGTCCCAGGGTCTGTC +
Preference number: 6 (lower is better)
Translates to: KAEPVEELAGQSPPE*VLLGSRAPAVPGSV
Trigger: GACAGACCCTGGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGGCTCGGCCTT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS GCA 72 bp TGGAGGAGTTGGCCGGGCAATCACCACCCGAGTTGGTaGTGTTGGGAAGCCGGGCACCTGCTGTCCCAGGGT +
Preference number: 6 (lower is better)
Translates to: WRSWPGNHHPSW*CWEAGHLLSQG
Trigger: ACCCTGGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS CCA 72 bp AGTTGGCCGGGCAATCACCACCCGAGTTGGTGCTGTTaGGAAGCCGGGCACCTGCTGTCCCAGGGTCTGTCC +
Preference number: 6 (lower is better)
Translates to: SWPGNHHPSWCC*EAGHLLSQGLS
Trigger: GGACAGACCCTGGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS CCA 72 bp CTGTGGAGGAGTTGGCCGGGCAATCACCACCCGAGTTaGTGCTGTTGGGAAGCCGGGCACCTGCTGTCCCAG +
Preference number: 6 (lower is better)
Translates to: LWRSWPGNHHPS*CCWEAGHLLSQ
Trigger: CTGGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS CCA 72 bp TCCCCCAGGATGGGAAGGCCGAGCCTGTGGAGGAGTTaGCCGGGCAATCACCACCCGAGTTGGTGCTGTTGG +
Preference number: 6 (lower is better)
Translates to: SPRMGRPSLWRS*PGNHHPSWCCW
Trigger: CCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGGCTCGGCCTTCCCATCCTGGGGGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp GGAGCCCAGGGTCTGTCCATGACCAGGAGGTCCCAGTaGACCAGTGGGAGCACTTGGCACACCACCAGGCTG +
Preference number: 6 (lower is better)
Translates to: GAQGLSMTRRSQ*TSGSTWHTTRL
Trigger: CAGCCTGGTGGTGTGCCAAGTGCTCCCACTGGTCCACTGGGACCTCCTGGTCATGGACAGACCCTGGGCTCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp CTGTGGAGGAGTTGGCCGGGCAATCACCACCCGAGTTaGTGCTGTTGGGAAGCCGGGCACCTGCTGTCCTGC +
Preference number: 6 (lower is better)
Translates to: LWRSWPGNHHPS*CCWEAGHLLSC
Trigger: GCAGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 72 bp GAGTTGGCCGGGCAATCACCACCCGAGTTGGTGCTGTaGGGAAGCCGGGCACCTGCTGTCCCAGGGTCTGTC +
Preference number: 6 (lower is better)
Translates to: ELAGQSPPELVL*GSRAPAVPGSV
Trigger: GACAGACCCTGGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS CAA 72 bp CCTGTGGAGGAGTTGGCCGGGCAATCACCACCCGAGTaGGTGCTGTTGGGAAGCCGGGCACCTGCTGTCCCA +
Preference number: 6 (lower is better)
Translates to: PVEELAGQSPPE*VLLGSRAPAVP
Trigger: TGGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS CAA 72 bp CCTGTGGAGGAGTTGGCCGGGCAATCACCACCCGAGTaGGTGCTGTTGGGAAGCCGGGCACCTGCTGTCCTG +
Preference number: 6 (lower is better)
Translates to: PVEELAGQSPPE*VLLGSRAPAVL
Trigger: CAGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 90 bp CCTGTGGAGGAGTTGGCCGGGCAATCACCACCCGAGTTGGTGCTGTaGGGAAGCCGGGCACCTGCTGTCCCAGGGTCTGTCCATGACCAG +
Preference number: 6 (lower is better)
Translates to: PVEELAGQSPPELVL*GSRAPAVPGSVHDQ
Trigger: CTGGTCATGGACAGACCCTGGGACAGCAGGTGCCCGGCTTCCCAACAGCACCAACTCGGGTGGTGATTGCCCGGCCAACTCCTCCACAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS TCA 72 bp CCGAGTGCCAGGCAGGGGTGCCCCACCATGAGTTGCTaGGGCAGAGCCTGTCCCAGAAGATGCTCCAGAAGG +
Preference number: 6 (lower is better)
Translates to: PSARQGCPTMSC*GRACPRRCSRR
Trigger: CCTTCTGGAGCATCTTCTGGGACAGGCTCTGCCTCAGCAACTCATGGTGGGGCACCCCTGCCTGGCACTCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173491.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000173952.8
ENSMUST00000174281.9
CDS GCA 72 bp GCCCCCAAGGAGCCCAGGAGGGAGCTCAACACGCCCTaGACCACTGAGGTGAAAAACTCTGGTGGCAGGCTC +
Preference number: 6 (lower is better)
Translates to: APKEPRRELNTP*TTEVKNSGGRL
Trigger: GAGCCTGCCACCAGAGTTTTTCACCTCAGTGGTGCAGGGCGTGTTGAGCTCCCTCCTGGGCTCCTTGGGGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp GCGGGAGCTGGGCCTGAGGGCGCAAGCTCTGGAGTCTaGGTTGGGGGACGTTCCTCCATTTCTTCTGACTCC +
Preference number: 6 (lower is better)
Translates to: AGAGPEGASSGV*VGGRSSISSDS
Trigger: GGAGTCAGAAGAAATGGAGGAACGTCCCCCAACCCAGACTCCAGAGCTTGCGCCCTCAGGCCCAGCTCCCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp CTGTCCCAGGGTCTGTCCATGACCAGGAGGTCCCAGTaGACCAGTGGGAGCACTTGGCACACCACCAGGCTG +
Preference number: 6 (lower is better)
Translates to: LSQGLSMTRRSQ*TSGSTWHTTRL
Trigger: CAGCCTGGTGGTGTGCCAAGTGCTCCCACTGGTCCACTGGGACCTCCTGGTCATGGACAGACCCTGGGACAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS CAA 90 bp GAAGTTGCCCCACAAGGCCGCTCACCATCTGGGCCAATGAAGTGTTaGTACCCAGCCCAGCGCCCAGAGCTCCAGAGACTGGAGGTCCCC +
Preference number: 6 (lower is better)
Translates to: EVAPQGRSPSGPMKC*YPAQRPELQRLEVP
Trigger: GGGGACCTCCAGTCTCTGGAGCTCTGGGCGCTGGGCTGGGTACAAACACTTCATTGGCCCAGATGGTGAGCGGCCTTGTGGGGCAACTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS TCA 72 bp GGAGCCCAGGAGGGAGCTCAACACGCCCTGCACCACTaGGGTGAAAAACTCTGGTGGCAGGCTCTCAGGACC +
Preference number: 6 (lower is better)
Translates to: GAQEGAQHALHH*GEKLWWQALRT
Trigger: GGTCCTGAGAGCCTGCCACCAGAGTTTTTCACCTCAGTGGTGCAGGGCGTGTTGAGCTCCCTCCTGGGCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp CCTCCTCACGGCCCTCATGGTTGTTGTTGTAGTCTGTaGTGGCAGCAGCGCCCAGGACCTCGCAGTAGCGCT +
Preference number: 6 (lower is better)
Translates to: PPHGPHGCCCSL*WQQRPGPRSSA
Trigger: AGCGCTACTGCGAGGTCCTGGGCGCTGCTGCCACCACAGACTACAACAACAACCATGAGGGCCGTGAGGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 72 bp GCCTCCGCACCAGGAGCTGGTGGAGGCCGAGCCCCATaGCCTGTCATGGTCACAGTAGTCCCCACATTGATC +
Preference number: 6 (lower is better)
Translates to: ASAPGAGGGRAP*PVMVTVVPTLI
Trigger: GATCAATGTGGGGACTACTGTGACCATGACAGGCAATGGGGCTCGGCCTCCACCAGCTCCTGGTGCGGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 90 bp GAAGTTGCCCCACAAGGCCGCTCACCATCTGGGCCAATGAAGTGTTaGTACCCAGCCCAGCGCCCTGCAGAGCTCCAGAGACTGGAGGTC +
Preference number: 6 (lower is better)
Translates to: EVAPQGRSPSGPMKC*YPAQRPAELQRLEV
Trigger: GACCTCCAGTCTCTGGAGCTCTGCAGGGCGCTGGGCTGGGTACAAACACTTCATTGGCCCAGATGGTGAGCGGCCTTGTGGGGCAACTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS TCA 72 bp AAGTTGCCCCACAAGGCCGCTCACCATCTGGGCCAATaGAGTGTTTGTACCCAGCCCAGCGCCCTGCAGAGC +
Preference number: 6 (lower is better)
Translates to: KLPHKAAHHLGQ*SVCTQPSALQS
Trigger: GCTCTGCAGGGCGCTGGGCTGGGTACAAACACTTCATTGGCCCAGATGGTGAGCGGCCTTGTGGGGCAACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
CDS TCA 72 bp AAGTTGCCCCACAAGGCCGCTCACCATCTGGGCCAATaGAGTGTTTGTACCCAGCCCAGCGCCCAGAGCTCC +
Preference number: 6 (lower is better)
Translates to: KLPHKAAHHLGQ*SVCTQPSAQSS
Trigger: GGAGCTCTGGGCGCTGGGCTGGGTACAAACACTTCATTGGCCCAGATGGTGAGCGGCCTTGTGGGGCAACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp CGCAGCTGTGGCTGGAGCCGCTGCAGTGGCTGGAAATaGCCATGGAGAAGCATCACCACATCCACCATGGAG +
Preference number: 6 (lower is better)
Translates to: RSCGWSRCSGWK*PWRSITTSTME
Trigger: CTCCATGGTGGATGTGGTGATGCTTCTCCATGGCCATTTCCAGCCACTGCAGCGGCTCCAGCCACAGCTGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 72 bp GTGTTGCCCAGTAGCCGCAGGCTCTCCCCAACCAAGTaGATCAACCTCTGGTCCTCCTCACGGCCCTCATGG +
Preference number: 6 (lower is better)
Translates to: VLPSSRRLSPTK*INLWSSSRPSW
Trigger: CCATGAGGGCCGTGAGGAGGACCAGAGGTTGATCAACTTGGTTGGGGAGAGCCTGCGGCTACTGGGCAACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 72 bp CCACAAGGCCGCTCACCATCTGGGCCAATGAAGTGTTaGTACCCAGCCCAGCGCCCAGAGCTCCAGAGACTG +
Preference number: 6 (lower is better)
Translates to: PQGRSPSGPMKC*YPAQRPELQRL
Trigger: CAGTCTCTGGAGCTCTGGGCGCTGGGCTGGGTACAAACACTTCATTGGCCCAGATGGTGAGCGGCCTTGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 90 bp GCCATCAGCCCCAGGCTCAAAGATGTTGCTGGATCCACTGAGGCGTaGGATGAAGGCAGCGATACTCTCACTGCTGCCAGCTCGAGCCCC +
Preference number: 6 (lower is better)
Translates to: AISPRLKDVAGSTEA*DEGSDTLTAASSSP
Trigger: GGGGCTCGAGCTGGCAGCAGTGAGAGTATCGCTGCCTTCATCCAACGCCTCAGTGGATCCAGCAACATCTTTGAGCCTGGGGCTGATGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS TCA 72 bp CAGACCGGAGCTTTCGTCTCTTGGCAGGCATGCCACTaGGGTAGGCATCACTCAGGGGCGGCTGAGGTTTCA +
Preference number: 6 (lower is better)
Translates to: QTGAFVSWQACH*GRHHSGAAEVS
Trigger: TGAAACCTCAGCCGCCCCTGAGTGATGCCTACCTCAGTGGCATGCCTGCCAAGAGACGAAAGCTCCGGTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000172571.8
ENSMUST00000172993.2
ENSMUST00000173550.8
CDS CCA 72 bp TTCATGTGCATCATGACCACGGGCTCCACACTCTGGTaGGAAATCCGGATGACCCGTGGGTGGCTGGAGGCT +
Preference number: 6 (lower is better)
Translates to: FMCIMTTGSTLW*EIRMTRGWLEA
Trigger: AGCCTCCAGCCACCCACGGGTCATCCGGATTTCCCACCAGAGTGTGGAGCCCGTGGTCATGATGCACATGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp TTAGCTGCCCGGCTCACTGCCTCTGAGAGTAGCAGCTaGGGGCCCTCACCCTGCATTGTCTTTCGTCTCTTG +
Preference number: 6 (lower is better)
Translates to: LAARLTASESSS*GPSPCIVFRLL
Trigger: CAAGAGACGAAAGACAATGCAGGGTGAGGGCCCCCAGCTGCTACTCTCAGAGGCAGTGAGCCGGGCAGCTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
CDS CAA 90 bp ATAGGCCGAACCACGTGCAGGTGCCGTGGGGGTGCACAGGCTAGATaGCAGCGCAGATCAGACAATGCCACGAAAGTGTTGCCCAGTAGC +
Preference number: 6 (lower is better)
Translates to: IGRTTCRCRGGAQAR*QRRSDNATKVLPSS
Trigger: GCTACTGGGCAACACTTTCGTGGCATTGTCTGATCTGCGCTGCAATCTAGCCTGTGCACCCCCACGGCACCTGCACGTGGTTCGGCCTAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 90 bp GCCACGAAAGTGTTGCCCAGTAGCCGCAGGCTCTCCCCAACCAAGTaGATCAACCTCTGGTCCTCCTCACGGCCCTCATGGTTGTTGTTG +
Preference number: 6 (lower is better)
Translates to: ATKVLPSSRRLSPTK*INLWSSSRPSWLLL
Trigger: CAACAACAACCATGAGGGCCGTGAGGAGGACCAGAGGTTGATCAACTTGGTTGGGGAGAGCCTGCGGCTACTGGGCAACACTTTCGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 90 bp CAGGCATGTGCTCCAAGACCACCTGAAGCCTCAGTCCCATCATGGTaGTCAGCCAGCTCACCAAGGATGGATTCACCCCGCGAGACATGC +
Preference number: 6 (lower is better)
Translates to: QACAPRPPEASVPSW*SASSPRMDSPRETC
Trigger: GCATGTCTCGCGGGGTGAATCCATCCTTGGTGAGCTGGCTGACAACCATGATGGGACTGAGGCTTCAGGTGGTCTTGGAGCACATGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp GTGGGGGAGCTCCTTCAGTTGATGAATCAACAGTGGTaGAAGAGGGAGGCAGGGATGTGGCCTGGGCAGAAC +
Preference number: 6 (lower is better)
Translates to: VGELLQLMNQQW*KREAGMWPGQN
Trigger: GTTCTGCCCAGGCCACATCCCTGCCTCCCTCTTCCACCACTGTTGATTCATCAACTGAAGGAGCTCCCCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp ATGTTCATGTGCATCATGACCACGGGCTCCACACTCTaGTGGGAAATCCGGATGACCCGTGGGTGGCTGGAG +
Preference number: 6 (lower is better)
Translates to: MFMCIMTTGSTL*WEIRMTRGWLE
Trigger: CTCCAGCCACCCACGGGTCATCCGGATTTCCCACCAGAGTGTGGAGCCCGTGGTCATGATGCACATGAACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp TCCCTTACATACTCTTCCAGCCCAGTGATCAGTGTGTaGGTCGCCATCCGGATGTTGCTAGGCGTGGGCTCC +
Preference number: 6 (lower is better)
Translates to: SLTYSSSPVISV*VAIRMLLGVGS
Trigger: GGAGCCCACGCCTAGCAACATCCGGATGGCGACCCACACACTGATCACTGGGCTGGAAGAGTATGTAAGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp CAGTCCCATCATGGTTGTCAGCCAGCTCACCAAGGATaGATTCACCCCGCGAGACATGCGGCGAATTCGACC +
Preference number: 6 (lower is better)
Translates to: QSHHGCQPAHQG*IHPARHAANST
Trigger: GGTCGAATTCGCCGCATGTCTCGCGGGGTGAATCCATCCTTGGTGAGCTGGCTGACAACCATGATGGGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 72 bp GCTCCAAGACCACCTGAAGCCTCAGTCCCATCATGGTaGTCAGCCAGCTCACCAAGGATGGATTCACCCCGC +
Preference number: 6 (lower is better)
Translates to: APRPPEASVPSW*SASSPRMDSPR
Trigger: GCGGGGTGAATCCATCCTTGGTGAGCTGGCTGACAACCATGATGGGACTGAGGCTTCAGGTGGTCTTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 90 bp GGGTCTGTCCATGACCAGGAGGTCCCAGTGGACCAGTGGGAGCACTaGGCACACCACCAGGCTGTGCTCCAGAATCTTGAATGTTCATGT +
Preference number: 6 (lower is better)
Translates to: GSVHDQEVPVDQWEH*AHHQAVLQNLECSC
Trigger: ACATGAACATTCAAGATTCTGGAGCACAGCCTGGTGGTGTGCCAAGTGCTCCCACTGGTCCACTGGGACCTCCTGGTCATGGACAGACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 90 bp GCTCCGAAGAATCCAAGGGCGCCATCAGCCCCAGGCTCAAAGATGTaGCTGGATCCACTGAGGCGTTGGATGAAGGCAGCGATACTCTCA +
Preference number: 6 (lower is better)
Translates to: APKNPRAPSAPGSKM*LDPLRRWMKAAILS
Trigger: TGAGAGTATCGCTGCCTTCATCCAACGCCTCAGTGGATCCAGCAACATCTTTGAGCCTGGGGCTGATGGCGCCCTTGGATTCTTCGGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS TCA 72 bp CCTGCATTGTCTTTCGTCTCTTGGCAGGCATGCCACTaGGGTAGGCATCACTCAGGGGCGGCTGAGGTTTCA +
Preference number: 6 (lower is better)
Translates to: PALSFVSWQACH*GRHHSGAAEVS
Trigger: TGAAACCTCAGCCGCCCCTGAGTGATGCCTACCTCAGTGGCATGCCTGCCAAGAGACGAAAGACAATGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
CDS TCA 72 bp CGGGACAGTAAGGTCTGTATATCCCTAATCATGTGCTaGGCCATCACCAGCCGGACCCGGGGCTCACTAGGA +
Preference number: 6 (lower is better)
Translates to: RDSKVCISLIMC*AITSRTRGSLG
Trigger: TCCTAGTGAGCCCCGGGTCCGGCTGGTGATGGCTCAGCACATGATTAGGGATATACAGACCTTACTGTCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000173952.8
CDS CCA 72 bp CAGTGGAGGTTCAGGGCCAAGCATTCAAACAGGCCCTaGTTACACAGCTCCAGCAACCGGGCTCCAAATCCA +
Preference number: 6 (lower is better)
Translates to: QWRFRAKHSNRP*LHSSSNRAPNP
Trigger: TGGATTTGGAGCCCGGTTGCTGGAGCTGTGTAACCAGGGCCTGTTTGAATGCTTGGCCCTGAACCTCCACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 72 bp CCCAGGCTCAAAGATGTTGCTGGATCCACTGAGGCGTaGGATGAAGGCAGCGATACTCTCACTGCTGCCAGC +
Preference number: 6 (lower is better)
Translates to: PRLKDVAGSTEA*DEGSDTLTAAS
Trigger: GCTGGCAGCAGTGAGAGTATCGCTGCCTTCATCCAACGCCTCAGTGGATCCAGCAACATCTTTGAGCCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 90 bp GCACAGGCTAGATTGCAGCGCAGATCAGACAATGCCACGAAAGTGTaGCCCAGTAGCCGCAGGCTCTCCCCAACCAAGTTGATCAACCTC +
Preference number: 6 (lower is better)
Translates to: AQARLQRRSDNATKV*PSSRRLSPTKLINL
Trigger: GAGGTTGATCAACTTGGTTGGGGAGAGCCTGCGGCTACTGGGCAACACTTTCGTGGCATTGTCTGATCTGCGCTGCAATCTAGCCTGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp CCAGGCTCAAAGATGTTGCTGGATCCACTGAGGCGTTaGATGAAGGCAGCGATACTCTCACTGCTGCCAGCT +
Preference number: 6 (lower is better)
Translates to: PGSKMLLDPLRR*MKAAILSLLPA
Trigger: AGCTGGCAGCAGTGAGAGTATCGCTGCCTTCATCCAACGCCTCAGTGGATCCAGCAACATCTTTGAGCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp TGTGGCTGGAGCCGCTGCAGTGGCTGGAAATGGCCATaGAGAAGCATCACCACATCCACCATGGAGAAATTC +
Preference number: 6 (lower is better)
Translates to: CGWSRCSGWKWP*RSITTSTMEKF
Trigger: GAATTTCTCCATGGTGGATGTGGTGATGCTTCTCCATGGCCATTTCCAGCCACTGCAGCGGCTCCAGCCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp TGTGCTCCAAGACCACCTGAAGCCTCAGTCCCATCATaGTTGTCAGCCAGCTCACCAAGGATGGATTCACCC +
Preference number: 6 (lower is better)
Translates to: CAPRPPEASVPS*LSASSPRMDSP
Trigger: GGGTGAATCCATCCTTGGTGAGCTGGCTGACAACCATGATGGGACTGAGGCTTCAGGTGGTCTTGGAGCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CCA 72 bp TCGGGACATGGCTTCTTCTGCTGTTGTTCCAGGGGCTaGGGAAGCATTCTCTCTCTGAGGTTCAGGGGAAGT +
Preference number: 6 (lower is better)
Translates to: SGHGFFCCCSRG*GSILSLRFRGS
Trigger: ACTTCCCCTGAACCTCAGAGAGAGAATGCTTCCCCAGCCCCTGGAACAACAGCAGAAGAAGCCATGTCCCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000172993.2
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 72 bp AGATTGCAGCGCAGATCAGACAATGCCACGAAAGTGTaGCCCAGTAGCCGCAGGCTCTCCCCAACCAAGTTG +
Preference number: 6 (lower is better)
Translates to: RLQRRSDNATKV*PSSRRLSPTKL
Trigger: CAACTTGGTTGGGGAGAGCCTGCGGCTACTGGGCAACACTTTCGTGGCATTGTCTGATCTGCGCTGCAATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS CAA 72 bp CTGGGGGCTGTAGTTGGGATCTTCCTGCAGTCGTTTTaGGATATCAGACCGGAGCTGCTGCCTGTAGCTCTC +
Preference number: 6 (lower is better)
Translates to: LGAVVGIFLQSF*DIRPELLPVAL
Trigger: GAGAGCTACAGGCAGCAGCTCCGGTCTGATATCCAAAAACGACTGCAGGAAGATCCCAACTACAGCCCCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
CDS TCA 72 bp ACATTCATCTGGGCCCCCACAATAAAAGTCCGAGTCTaGGAGTCCAGGGTCTTCACCAGTACCTCCAGGCTG +
Preference number: 6 (lower is better)
Translates to: TFIWAPTIKVRV*ESRVFTSTSRL
Trigger: CAGCCTGGAGGTACTGGTGAAGACCCTGGACTCTCAGACTCGGACTTTTATTGTGGGGGCCCAGATGAATGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173491.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000173952.8
ENSMUST00000174281.9
ENSMUST00000174478.8
CDS CAA 72 bp CTGGGGGCTGTAGTTGGGATCTTCCTGCAGTCGTTTTaGGATATCAGACCGGAGCTTTCGTCTCTTGGCAGG +
Preference number: 6 (lower is better)
Translates to: LGAVVGIFLQSF*DIRPELSSLGR
Trigger: CCTGCCAAGAGACGAAAGCTCCGGTCTGATATCCAAAAACGACTGCAGGAAGATCCCAACTACAGCCCCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000172571.8
ENSMUST00000172993.2
ENSMUST00000173550.8
CDS TCA 72 bp GCTGTGCTCCAGAATCTTGAATGTTCATGTGCATCATaGCCACGGGCTCCACACTCTGGTGGGAAATCCGGA +
Preference number: 6 (lower is better)
Translates to: AVLQNLECSCAS*PRAPHSGGKSG
Trigger: TCCGGATTTCCCACCAGAGTGTGGAGCCCGTGGTCATGATGCACATGAACATTCAAGATTCTGGAGCACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173535.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS TCA 72 bp CGGGCTCCAAATCCACTGTCTGTACAGTGCAGCACATaGGCAGCAATGCTGTTAAACTGCTCTTGGAGAAAT +
Preference number: 6 (lower is better)
Translates to: RAPNPLSVQCST*AAMLLNCSWRN
Trigger: ATTTCTCCAAGAGCAGTTTAACAGCATTGCTGCTCATGTGCTGCACTGTACAGACAGTGGATTTGGAGCCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9
CDS TCA 72 bp AATTCTAAATTTGTCCGGATGATATCCACACCTGGCTaGACCTGTACCAAAGAAAAACTCTCCCTTACATAC +
Preference number: 6 (lower is better)
Translates to: NSKFVRMISTPG*TCTKEKLSLTY
Trigger: GTATGTAAGGGAGAGTTTTTCTTTGGTACAGGTTCAGCCAGGTGTGGATATCATCCGGACAAATTTAGAATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000025250.14
ENSMUST00000166426.9
ENSMUST00000172571.8
ENSMUST00000173550.8
ENSMUST00000174281.9