RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BACH2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040270

Ensembl transcript IDs: ENSMUST00000037416.13, ENSMUST00000108180.9, ENSMUST00000171600.2

Found 465 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGTGCCTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTTTaGTCTGCAGTCCTTCGAGCCATCCGCTCTGTCCCTGTGGAGGAC +
Preference number: 1 (lower is better)
Translates to: SACGVLTHHRRLPLF*SAVLRAIRSVPVED
Trigger: GTCCTCCACAGGGACAGAGCGGATGGCTCGAAGGACTGCAGAGCAAAAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 90 bp CTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTTTGCTCTaGAGTCCTTCGAGCCATCCGCTCTGTCCCTGTGGAGGACTTGAG +
Preference number: 1 (lower is better)
Translates to: LWRSNTPPQAPALLL*SPSSHPLCPCGGLE
Trigger: CTCAAGTCCTCCACAGGGACAGAGCGGATGGCTCGAAGGACTGCAGAGCAAAAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 90 bp GAGGGCTTGGGCAGAGGGCAGAGGGCTCCTACGGTATCTGTCCTATaGCTCGATGAAGCAGCTTTCAGACAAGAGACTTGGGGGAGGGGG +
Preference number: 1 (lower is better)
Translates to: EGLGRGQRAPTVSVL*LDEAAFRQETWGRG
Trigger: CCCCCTCCCCCAAGTCTCTTGTCTGAAAGCTGCTTCATCGAGGCATAGGACAGATACCGTAGGAGCCCTCTGCCCTCTGCCCAAGCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 90 bp GACCTGACGCCCTGGCCCCCACCCTGGAAGTGGCTGCCATGGGTCTaGGCTACTGGCAACAGAAACGTAGTGGGTAAACTGTGGAATGTG +
Preference number: 1 (lower is better)
Translates to: DLTPWPPPWKWLPWV*ATGNRNVVGKLWNV
Trigger: CACATTCCACAGTTTACCCACTACGTTTCTGTTGCCAGTAGCTCAGACCCATGGCAGCCACTTCCAGGGTGGGGGCCAGGGCGTCAGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 90 bp AACACAACTCGGCAAAGCACACACCTGCCCACAGCCTGGGCAACCTaGAGGAGGCTGTTCAGAGACACAGGAGGACAGAGGCTGCTCCGA +
Preference number: 1 (lower is better)
Translates to: NTTRQSTHLPTAWAT*RRLFRDTGGQRLLR
Trigger: TCGGAGCAGCCTCTGTCCTCCTGTGTCTCTGAACAGCCTCCTTCAGGTTGCCCAGGCTGTGGGCAGGTGTGTGCTTTGCCGAGTTGTGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 90 bp CCAGATAACGCAGAGACACAAACACAACTCGGCAAAGCACACACCTaGCCACAGCCTGGGCAACCTGAAGGAGGCTGTTCAGAGACACAG +
Preference number: 1 (lower is better)
Translates to: PDNAETQTQLGKAHT*PQPGQPEGGCSETQ
Trigger: CTGTGTCTCTGAACAGCCTCCTTCAGGTTGCCCAGGCTGTGGGCAGGTGTGTGCTTTGCCGAGTTGTGTTTGTGTCTCTGCGTTATCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 90 bp CCTGGGGCATGCCTTCCTGTAAACATGGCTTGCACCAGGATACCCTaGGGCCAAGGAAGCTGCTCGACAGATCTGCAAACCAAGCAGTTT +
Preference number: 1 (lower is better)
Translates to: PGACLPVNMACTRIP*GQGSCSTDLQTKQF
Trigger: AAACTGCTTGGTTTGCAGATCTGTCGAGCAGCTTCCTTGGCCCCAGGGTATCCTGGTGCAAGCCATGTTTACAGGAAGGCATGCCCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 90 bp CAGACTGGTTCTGGAACAAACTCTCACAGGCCCTCTTGCCTTGAATaGCTCACCGTGTCTAACGAGTACCCGAGGCTCCCAAACGCATCT +
Preference number: 1 (lower is better)
Translates to: QTGSGTNSHRPSCLE*LTVSNEYPRLPNAS
Trigger: AGATGCGTTTGGGAGCCTCGGGTACTCGTTAGACACGGTGAGCCATTCAAGGCAAGAGGGCCTGTGAGAGTTTGTTCCAGAACCAGTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 90 bp GGGCCGCAGCCCCTTGCATACACTGAGAAGACCCTGTTTTGCATATaGCCTCTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTTGCAT +
Preference number: 1 (lower is better)
Translates to: GPQPLAYTEKTLFCI*PLEFVRHRLEVHLH
Trigger: ATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAGAGGCCATATGCAAAACAGGGTCTTCTCAGTGTATGCAAGGGGCTGCGGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 90 bp CCTGTAAACATGGCTTGCACCAGGATACCCTGGGGCCAAGGAAGCTaGTCGACAGATCTGCAAACCAAGCAGTTTTTAGGAAGGGAAGCA +
Preference number: 1 (lower is better)
Translates to: PVNMACTRIPWGQGS*STDLQTKQFLGREA
Trigger: TGCTTCCCTTCCTAAAAACTGCTTGGTTTGCAGATCTGTCGAGCAGCTTCCTTGGCCCCAGGGTATCCTGGTGCAAGCCATGTTTACAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 90 bp GAGACACAGGAGGACAGAGGCTGCTCCGAGGGGGAGGCCTGGGTTTaGATAGGAGTGTCCTGTATTGTTGAAAGAAAAGACCTTCAAACA +
Preference number: 1 (lower is better)
Translates to: ETQEDRGCSEGEAWV*IGVSCIVERKDLQT
Trigger: TGTTTGAAGGTCTTTTCTTTCAACAATACAGGACACTCCTATCCAAACCCAGGCCTCCCCCTCGGAGCAGCCTCTGTCCTCCTGTGTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 90 bp TGTTCAGAGACACAGGAGGACAGAGGCTGCTCCGAGGGGGAGGCCTaGGTTTGGATAGGAGTGTCCTGTATTGTTGAAAGAAAAGACCTT +
Preference number: 1 (lower is better)
Translates to: CSETQEDRGCSEGEA*VWIGVSCIVERKDL
Trigger: AAGGTCTTTTCTTTCAACAATACAGGACACTCCTATCCAAACCCAGGCCTCCCCCTCGGAGCAGCCTCTGTCCTCCTGTGTCTCTGAACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 90 bp GGACAGAAAAATAACGCTCTCTACTGCAGCATCAGCCCTGATGCCTaGGTCACTGTTGGGGAACCTGGAAGAGAAGTTGCAGGATGGTCT +
Preference number: 1 (lower is better)
Translates to: GQKNNALYCSISPDA*VTVGEPGREVAGWS
Trigger: AGACCATCCTGCAACTTCTCTTCCAGGTTCCCCAACAGTGACTCAGGCATCAGGGCTGATGCTGCAGTAGAGAGCGTTATTTTTCTGTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 90 bp AGGCTCCCAAACGCATCTGCAATCTTCCTGATAATTTGTGACAAGTaGCAGGCTCTTGTGTCAGAGTGTGAATGGGCATCCCAGCGTTGC +
Preference number: 1 (lower is better)
Translates to: RLPNASAIFLIICDK*QALVSECEWASQRC
Trigger: GCAACGCTGGGATGCCCATTCACACTCTGACACAAGAGCCTGGCACTTGTCACAAATTATCAGGAAGATTGCAGATGCGTTTGGGAGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 90 bp CCACGGGATGCAGAGCAGCCTCCCGGGGCAAGACTGGGTGGTTTCTaGAAAGGTTTATACTTTCAAACCGTTGTCTGCTTTGTCTTTTTC +
Preference number: 1 (lower is better)
Translates to: PRDAEQPPGARLGGF*KGLYFQTVVCFVFF
Trigger: GAAAAAGACAAAGCAGACAACGGTTTGAAAGTATAAACCTTTTCAGAAACCACCCAGTCTTGCCCCGGGAGGCTGCTCTGCATCCCGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 90 bp AATCCGTGGTTGGGTCCTAGAGGTGTAGTCTATCCCTGTGAAGTTTaGAATGAACCCACAGACAGACAGTGTCGACACTGTTGTCTTCCT +
Preference number: 1 (lower is better)
Translates to: NPWLGPRGVVYPCEV*NEPTDRQCRHCCLP
Trigger: AGGAAGACAACAGTGTCGACACTGTCTGTCTGTGGGTTCATTGCAAACTTCACAGGGATAGACTACACCTCTAGGACCCAACCACGGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 90 bp CTACCCTATCCCAACATCAGACTTTTCTGGATAACCTTGCACAGCTaGAGTGGTCTCCAGGCTGCTGAACAGAAGCAGATAGATAGAGAC +
Preference number: 1 (lower is better)
Translates to: LPYPNIRLFWITLHS*SGLQAAEQKQIDRD
Trigger: GTCTCTATCTATCTGCTTCTGTTCAGCAGCCTGGAGACCACTCCAGCTGTGCAAGGTTATCCAGAAAAGTCTGATGTTGGGATAGGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 90 bp CCCGTGAGCAACTACACAAAGCCAGTTGCTGTTCCTGGTGGATACTaGATAAAATTACTTGTTAAAAATACCAAAGAAGCCGGGCGGTGG +
Preference number: 1 (lower is better)
Translates to: PVSNYTKPVAVPGGY*IKLLVKNTKEAGRW
Trigger: CCACCGCCCGGCTTCTTTGGTATTTTTAACAAGTAATTTTATTCAGTATCCACCAGGAACAGCAACTGGCTTTGTGTAGTTGCTCACGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 90 bp CTCCGAGGGGGAGGCCTGGGTTTGGATAGGAGTGTCCTGTATTGTTaGAAGAAAAGACCTTCAAACACACAACTAAATGTTCCTTTAAAA +
Preference number: 1 (lower is better)
Translates to: LRGGGLGLDRSVLYC*KKRPSNTQLNVPLK
Trigger: TTTTAAAGGAACATTTAGTTGTGTGTTTGAAGGTCTTTTCTTTCAACAATACAGGACACTCCTATCCAAACCCAGGCCTCCCCCTCGGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 90 bp ACACTACTTATGCACAAATATATCCTATGCTACAGCATCAGTCTTTaGCACTTGGGTCGTGAGATGGCTCGGGCAGTATTATACATTTTG +
Preference number: 1 (lower is better)
Translates to: TLLMHKYILCYSISL*HLGREMARAVLYIL
Trigger: CAAAATGTATAATACTGCCCGAGCCATCTCACGACCCAAGTGTCAAAGACTGATGCTGTAGCATAGGATATATTTGTGCATAAGTAGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 90 bp ACAACATTAAACCAAAGCTATAAAAGTTGGGCCTCTGCGACCAAGTaGGATATTCTCCACGAAATGGCAGCATCATTTCCTATTACAATT +
Preference number: 1 (lower is better)
Translates to: TTLNQSYKSWASATK*DILHEMAASFPITI
Trigger: AATTGTAATAGGAAATGATGCTGCCATTTCGTGGAGAATATCCCACTTGGTCGCAGAGGCCCAACTTTTATAGCTTTGGTTTAATGTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 90 bp GACGAGTCTCTTCAATGTACAAGTACTATTTGCACACACTACTTATaGACAAATATATCCTATGCTACAGCATCAGTCTTTGACACTTGG +
Preference number: 1 (lower is better)
Translates to: DESLQCTSTICTHYL*TNISYATASVFDTW
Trigger: CCAAGTGTCAAAGACTGATGCTGTAGCATAGGATATATTTGTGCATAAGTAGTGTGTGCAAATAGTACTTGTACATTGAAGAGACTCGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 90 bp AGGTCAATAAACTGGAATGAAAATGACAGCCAAGAGTTTATCCATTaGTTGAGAGAGAAACGCATACACCATGCCACAACATTAAACCAA +
Preference number: 1 (lower is better)
Translates to: RSINWNENDSQEFIH*LREKRIHHATTLNQ
Trigger: TTGGTTTAATGTTGTGGCATGGTGTATGCGTTTCTCTCTCAAGCAATGGATAAACTCTTGGCTGTCATTTTCATTCCAGTTTATTGACCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 90 bp ATAAAAGTTGGGCCTCTGCGACCAAGTGGGATATTCTCCACGAAATaGCAGCATCATTTCCTATTACAATTAAAATGCACTAATAATTCA +
Preference number: 1 (lower is better)
Translates to: IKVGPLRPSGIFSTK*QHHFLLQLKCTNNS
Trigger: TGAATTATTAGTGCATTTTAATTGTAATAGGAAATGATGCTGCCATTTCGTGGAGAATATCCCACTTGGTCGCAGAGGCCCAACTTTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 90 bp ACCCATATATATATATATTTTTGTTCAAGTCCCTTCACTCTTTTCTaGTATAGGTGTCTGATCATTTCCATGGGAGCGTTTGGCACTGAA +
Preference number: 1 (lower is better)
Translates to: THIYIYFCSSPFTLF*YRCLIISMGAFGTE
Trigger: TTCAGTGCCAAACGCTCCCATGGAAATGATCAGACACCTATATCAGAAAAGAGTGAAGGGACTTGAACAAAAATATATATATATATGGGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 90 bp CAGTGCCTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTTaGCTCTGCAGTCCTTCGAGCCATCCGCTCTGTCCCTGTGGAGGA +
Preference number: 2 (lower is better)
Translates to: QCLWRSNTPPQAPAL*LCSPSSHPLCPCGG
Trigger: TCCTCCACAGGGACAGAGCGGATGGCTCGAAGGACTGCAGAGCAAAAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR TCA 90 bp TCTCCTCACCAGTGCCTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTTCTTCAAGACACAGATaGACAGCGCCACTGGCTGGC +
Preference number: 2 (lower is better)
Translates to: SPHQCLWRSNTPPQAPALSSRHR*TAPLAG
Trigger: GCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGA...AAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACTGGTGAGGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGCCCTGGCCCCCACCCTaGAAGTGGCTGCCATGGGTC +
Preference number: 2 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPPWPPP*KWLPWV
Trigger: GACCCATGGCAGCCACTTCCAGGGTGGGGGCCAGGG...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR GCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGACTGGTTCCACGGGATaGAGAGCAGCCTCCCGGGGC +
Preference number: 2 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPTGSTG*RAASRG
Trigger: GCCCCGGGAGGCTGCTCTGCATCCCGTGGAACCAGT...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR TCA 90 bp CTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTTGCATCAGACTGGTTCTGGACTAGGGGGCTGCCACTaGAAGCTGAGGCCAGGCCTG +
Preference number: 2 (lower is better)
Translates to: LEFVRHRLEVHLHQTGSGLGGCH*KLRPGL
Trigger: CAGGCCTGGCCTCAGCTTTCAGTGGCAGCCCCCTAG...TCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR GCA 90 bp GACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAGTCTGACCCCTGGGGCATaGCTTCCTGTAAACATGGCT +
Preference number: 2 (lower is better)
Translates to: DRGRRISEFEASLVYRVSLTPGA*LPVNMA
Trigger: AGCCATGTTTACAGGAAGGCATGCCCCAGGGGTCAG...ACTCACTCTGTAGACTAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp TCTCCTCACCAGTGCCTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTTTACTTGGGGAAACGTaGGGAGGAAGTGAGCTACAA +
Preference number: 2 (lower is better)
Translates to: SPHQCLWRSNTPPQAPALLLGET*GGSELQ
Trigger: TTGTAGCTCACTTCCTCCCCACGTTTCCCCAAGTAA...AAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACTGGTGAGGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR TCA 90 bp GGCCGCAGCCCCTTGCATACACTGAGAAGACCCTGTTTTGCATATGGCCTCTGGGCTAGTGCAGCAGTTTaGAGCCATCAACAACAGCTC +
Preference number: 2 (lower is better)
Translates to: GRSPLHTLRRPCFAYGLWASAAV*SHQQQL
Trigger: GAGCTGTTGTTGATGGCTTCAAACTGCTGCACTAGC...CCAGAGGCCATATGCAAAACAGGGTCTTCTCAGTGTATGCAAGGGGCTGCGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR TCA 90 bp GCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGACACCAGATGAGAGAGGTGTaGAGACCCGGGGGTAGGGTG +
Preference number: 2 (lower is better)
Translates to: AAKTAVVCTKFALGSSRHQMREV*RPGGRV
Trigger: CACCCTACCCCCGGGTCTTCACACCTCTCTCATCTG...GTGTCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp CTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTTGCATCAGACTGGTTCTGGACCTGGGCAGGAAAGCTaGGGGTTGGTTAGCTGTGAC +
Preference number: 2 (lower is better)
Translates to: LEFVRHRLEVHLHQTGSGPGQES*GLVSCD
Trigger: GTCACAGCTAACCAACCCCCAGCTTTCCTGCCCAGG...TCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR GCA 90 bp CTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTTGCATCAGACTGGTTCTGGAAGAGAATTCCTCCCCTaGTGTCTCCTCACCAGTGCC +
Preference number: 2 (lower is better)
Translates to: LEFVRHRLEVHLHQTGSGREFLP*CLLTSA
Trigger: GGCACTGGTGAGGAGACAGCAGGGGAGGAATTCTCT...TCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp TCTCCTCACCAGTGCCTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTGTAAATAAGCACAGATaGAAACCGAATTGTGCAGCA +
Preference number: 2 (lower is better)
Translates to: SPHQCLWRSNTPPQAPALVNKHR*KPNCAA
Trigger: TGCTGCACAATTCGGTTTCCATCTGTGCTTATTTAC...AAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACTGGTGAGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 90 bp TGCATATGGCCTCTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTaGCATCAGACTGGTTCTGGAACAAACTCTCACAGGCCCTCTTGC +
Preference number: 2 (lower is better)
Translates to: CIWPLEFVRHRLEVH*HQTGSGTNSHRPSC
Trigger: GCAAGAGGGCCTGTGAGAGTTTGTTCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAGAGGCCATATGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR TCA 90 bp AAGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAACAGATGAGAGAGGTGTaGAGACCCGGGGGTAGGGTG +
Preference number: 2 (lower is better)
Translates to: KQNSHVNSFQTSSGTRHKQMREV*RPGGRV
Trigger: CACCCTACCCCCGGGTCTTCACACCTCTCTCATCTG...TTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp CTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTTGCATCAGACTGGTTCTGGAGATTATTACCTGGGGTaGGAGAAAGGTGGGGGTGAG +
Preference number: 2 (lower is better)
Translates to: LEFVRHRLEVHLHQTGSGDYYLG*EKGGGE
Trigger: CTCACCCCCACCTTTCTCCCACCCCAGGTAATAATC...TCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp CTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTTGCATCAGACTGGTTCTGGAGGGGAGGCCTGGGTTTaGATAGGAGTGTCCTGTATT +
Preference number: 2 (lower is better)
Translates to: LEFVRHRLEVHLHQTGSGGEAWV*IGVSCI
Trigger: AATACAGGACACTCCTATCCAAACCCAGGCCTCCCC...TCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGCACTGTTGGGGAACCTaGAAGAGAAGTTGCAGGATG +
Preference number: 2 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPHCWGT*KRSCRM
Trigger: CATCCTGCAACTTCTCTTCCAGGTTCCCCAACAGTG...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 90 bp ATAACGCTCTCTACTGCAGCATCAGCCCTGATGCCTGAGTCACTGTaGGGGAACCTGGAAGAGAAGTTGCAGGATGGTCTAGTAACTTTG +
Preference number: 2 (lower is better)
Translates to: ITLSTAASALMPESL*GNLEEKLQDGLVTL
Trigger: CAAAGTTACTAGACCATCCTGCAACTTCTCTTCCAGGTTCCCCAACAGTGACTCAGGCATCAGGGCTGATGCTGCAGTAGAGAGCGTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 90 bp CATTACCCTCTACCCTATCCCAACATCAGACTTTTCTGGATAACCTaGCACAGCTGGAGTGGTCTCCAGGCTGCTGAACAGAAGCAGATA +
Preference number: 2 (lower is better)
Translates to: HYPLPYPNIRLFWIT*HSWSGLQAAEQKQI
Trigger: TATCTGCTTCTGTTCAGCAGCCTGGAGACCACTCCAGCTGTGCAAGGTTATCCAGAAAAGTCTGATGTTGGGATAGGGTAGAGGGTAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp CCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGTGGGGCTTCCAAACCAGTTCTaGCACCAGACACAAAAAGAG +
Preference number: 2 (lower is better)
Translates to: PVSALNHLHFSFTWGNVGLPNQF*HQTQKE
Trigger: CTCTTTTTGTGTCTGGTGCCAGAACTGGTTTGGAAG...CCCCACGTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp GACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAGTCTACACATCCTAGGATaGGTTCATTATTTGGCAAGA +
Preference number: 2 (lower is better)
Translates to: DRGRRISEFEASLVYRVSLHILG*VHYLAR
Trigger: TCTTGCCAAATAATGAACCCATCCTAGGATGTGTAG...ACTCACTCTGTAGACTAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGAAAGAACTTAGATTCTaGTCCCCAGTGAGGTCTCCT +
Preference number: 2 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPKELRF*SPVRSP
Trigger: AGGAGACCTCACTGGGGACCAGAATCTAAGTTCTTT...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 90 bp AAGACCCTGTTTTGCATATGGCCTCTGGAGTTCGTAAGGCATAGATaGGAGGTGCACTTGCATCAGACTGGTTCTGGAACAAACTCTCAC +
Preference number: 2 (lower is better)
Translates to: KTLFCIWPLEFVRHR*EVHLHQTGSGTNSH
Trigger: GTGAGAGTTTGTTCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAGAGGCCATATGCAAAACAGGGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR GCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGAACGTTAGCTTTACCTaGTTTTCATGGAGACATGCC +
Preference number: 2 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPNVSFT*FSWRHA
Trigger: GGCATGTCTCCATGAAAAGCAGGTAAAGCTAACGTT...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR GCA 90 bp GGCCGCAGCCCCTTGCATACACTGAGAAGACCCTGTTTTGCATATGGCCTCTGGTGTACAAGTACTATTTaGACACACTACTTATGCACA +
Preference number: 2 (lower is better)
Translates to: GRSPLHTLRRPCFAYGLWCTSTI*THYLCT
Trigger: TGTGCATAAGTAGTGTGTGCAAATAGTACTTGTACA...CCAGAGGCCATATGCAAAACAGGGTCTTCTCAGTGTATGCAAGGGGCTGCGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp GGCCGCAGCCCCTTGCATACACTGAGAAGACCCTGTTTTGCATATGGCCTCTGGAGTTGCTGTTCCTGGTaGATACTGAATAAAATTACT +
Preference number: 2 (lower is better)
Translates to: GRSPLHTLRRPCFAYGLWSCCSW*ILNKIT
Trigger: AGTAATTTTATTCAGTATCCACCAGGAACAGCAACT...CCAGAGGCCATATGCAAAACAGGGTCTTCTCAGTGTATGCAAGGGGCTGCGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR TCA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTTCAGAAGAAATTCCTaGGATAGGGTTTGTGACATG +
Preference number: 2 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRFRRNS*DRVCDM
Trigger: CATGTCACAAACCCTATCTCAGGAATTTCTTCTGAA...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR TCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGTTCAGAAGAAATTCCTaGGATAGGGTTTGTGACATG +
Preference number: 2 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPFRRNS*DRVCDM
Trigger: CATGTCACAAACCCTATCTCAGGAATTTCTTCTGAA...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR TCA 90 bp CTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTTGCATCAGACTGGTTCTGGATCTGAGGATAAACCTTaGTCCTTGCTCTCTTCTAGA +
Preference number: 2 (lower is better)
Translates to: LEFVRHRLEVHLHQTGSGSEDKP*SLLSSR
Trigger: TCTAGAAGAGAGCAAGGATCAAGGTTTATCCTCAGA...TCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 90 bp CTCCATGCACAGACTTCCTTTAAGAATTACCAACCCCACGAGGCATaGTGGACTGACTTGCCAGAAATGGAATCTGCAACAAAATCCTCA +
Preference number: 2 (lower is better)
Translates to: LHAQTSFKNYQPHEA*WTDLPEMESATKSS
Trigger: TGAGGATTTTGTTGCAGATTCCATTTCTGGCAAGTCAGTCCACAATGCCTCGTGGGGTTGGTAATTCTTAAAGGAAGTCTGTGCATGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR TCA 90 bp ACTTCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGCAGATGAGAGAGGTGTaGAGACCCGGGGGTAGGGTG +
Preference number: 2 (lower is better)
Translates to: TSFKKIGLTQNSVQVAKLQMREV*RPGGRV
Trigger: CACCCTACCCCCGGGTCTTCACACCTCTCTCATCTG...CAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR TCA 90 bp TCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCTCTTCAAGACACAGATaGACAGCGCCACTGGCTGGC +
Preference number: 2 (lower is better)
Translates to: SFKKIGLTQNSVQVAKLTSSRHR*TAPLAG
Trigger: GCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGA...GGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR GCA 90 bp CTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTTGCATCAGACTGGTTCTGGATCCTTGGGAAAGCAATaGAAGGATTACATCCAAAAT +
Preference number: 2 (lower is better)
Translates to: LEFVRHRLEVHLHQTGSGSLGKQ*KDYIQN
Trigger: ATTTTGGATGTAATCCTTGCATTGCTTTCCCAAGGA...TCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR GCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGTGCACACACTACTTATaGACAAATATATCCTATGCT +
Preference number: 2 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPCTHYL*TNISYA
Trigger: AGCATAGGATATATTTGTGCATAAGTAGTGTGTGCA...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp GAGCATCCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACCTACACATCCTAGGATaGGTTCATTATTTGGCAAGA +
Preference number: 2 (lower is better)
Translates to: EHPVSALNHLHFSFTWGNLHILG*VHYLAR
Trigger: TCTTGCCAAATAATGAACCCATCCTAGGATGTGTAG...GTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGGATGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATGTAAACTGTGGAATGTaGCAAGACCTCCAGCTGCAC +
Preference number: 2 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHVNCGM*QDLQLH
Trigger: GTGCAGCTGGAGGTCTTGCCACATTCCACAGTTTAC...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATCAGCTGCACACGGGCTaGGAAAACATAAAACAAGCA +
Preference number: 2 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHQLHTG*ENIKQA
Trigger: TGCTTGTTTTATGTTTTCCCAGCCCGTGTGCAGCTG...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 90 bp GGGCAAGACTGGGTGGTTTCTGAAAAGGTTTATACTTTCAAACCGTaGTCTGCTTTGTCTTTTTCTTCTTCAGTGGCAACCATAAAGTAT +
Preference number: 2 (lower is better)
Translates to: GQDWVVSEKVYTFKP*SALSFSSSVATIKY
Trigger: ATACTTTATGGTTGCCACTGAAGAAGAAAAAGACAAAGCAGACAACGGTTTGAAAGTATAAACCTTTTCAGAAACCACCCAGTCTTGCCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 90 bp TCAATAAACTGGAATGAAAATGACAGCCAAGAGTTTATCCATTGCTaGAGAGAGAAACGCATACACCATGCCACAACATTAAACCAAAGC +
Preference number: 2 (lower is better)
Translates to: SINWNENDSQEFIHC*REKRIHHATTLNQS
Trigger: GCTTTGGTTTAATGTTGTGGCATGGTGTATGCGTTTCTCTCTCAAGCAATGGATAAACTCTTGGCTGTCATTTTCATTCCAGTTTATTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR GCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATCTGTGTGTAGGAATATaGAATCCAATACAGGCTCTA +
Preference number: 2 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHLCVGI*NPIQAL
Trigger: TAGAGCCTGTATTGGATTGCATATTCCTACACACAG...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATGCCAGTTGCTGTTCCTaGTGGATACTGAATAAAATT +
Preference number: 2 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHASCCS*WILNKI
Trigger: AATTTTATTCAGTATCCACCAGGAACAGCAACTGGC...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR TCA 90 bp ACTTCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGTTTGTAAATGATAAGTaGAGCTTCCAGTTTCAGGGA +
Preference number: 2 (lower is better)
Translates to: TSFKKIGLTQNSVQVAKLFVNDK*SFQFQG
Trigger: TCCCTGAAACTGGAAGCTTCACTTATCATTTACAAA...CAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGAAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 72 bp ACTGGCTGGCAGAAGAACACCCAGATGAGAGAGGTGTaGAGACCCGGGGGTAGGGTGGTGGGTAGGGCAGAG +
Preference number: 3 (lower is better)
Translates to: TGWQKNTQMREV*RPGGRVVGRAE
Trigger: CTCTGCCCTACCCACCACCCTACCCCCGGGTCTTCACACCTCTCTCATCTGGGTGTTCTTCTGCCAGCCAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 72 bp GGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTTTaGTCTGCAGTCCTTCGAGCCATCCGCTCTGTCCCT +
Preference number: 3 (lower is better)
Translates to: GVLTHHRRLPLF*SAVLRAIRSVP
Trigger: AGGGACAGAGCGGATGGCTCGAAGGACTGCAGAGCAAAAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 72 bp GAAGGAGGCTGTTCAGAGACACAGGAGGACAGAGGCTaGTCCGAGGGGGAGGCCTGGGTTTGGATAGGAGTG +
Preference number: 3 (lower is better)
Translates to: EGGCSETQEDRG*SEGEAWVWIGV
Trigger: CACTCCTATCCAAACCCAGGCCTCCCCCTCGGAGCAGCCTCTGTCCTCCTGTGTCTCTGAACAGCCTCCTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 72 bp CCCTGGCCCCCACCCTGGAAGTGGCTGCCATGGGTCTaGGCTACTGGCAACAGAAACGTAGTGGGTAAACTG +
Preference number: 3 (lower is better)
Translates to: PWPPPWKWLPWV*ATGNRNVVGKL
Trigger: CAGTTTACCCACTACGTTTCTGTTGCCAGTAGCTCAGACCCATGGCAGCCACTTCCAGGGTGGGGGCCAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 72 bp TCTAACACACCACCGCAGGCTCCCGCTCTTTTGCTCTaGAGTCCTTCGAGCCATCCGCTCTGTCCCTGTGGA +
Preference number: 3 (lower is better)
Translates to: SNTPPQAPALLL*SPSSHPLCPCG
Trigger: TCCACAGGGACAGAGCGGATGGCTCGAAGGACTGCAGAGCAAAAGAGCGGGAGCCTGCGGTGGTGTGTTAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CAA 90 bp TCTCCTCACCAGTGCCTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTACACTGTTGTCTTCCTaGCCAGGGCAAGGGGTAGCA +
Preference number: 3 (lower is better)
Translates to: SPHQCLWRSNTPPQAPALTLLSS*PGQGVA
Trigger: TGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGT...AAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACTGGTGAGGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 72 bp ATGAAGAGAATTCCTCCCCTGCTGTCTCCTCACCAGTaGCTGTGGCGTTCTAACACACCACCGCAGGCTCCC +
Preference number: 3 (lower is better)
Translates to: MKRIPPLLSPHQ*LWRSNTPPQAP
Trigger: GGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACTGGTGAGGAGACAGCAGGGGAGGAATTCTCTTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CAA 90 bp GGCCGCAGCCCCTTGCATACACTGAGAAGACCCTGTTTTGCATATGGCCTCTGGACAAGTGCCAGGCTCTaGTGTCAGAGTGTGAATGGG +
Preference number: 3 (lower is better)
Translates to: GRSPLHTLRRPCFAYGLWTSARL*CQSVNG
Trigger: CCCATTCACACTCTGACACAAGAGCCTGGCACTTGT...CCAGAGGCCATATGCAAAACAGGGTCTTCTCAGTGTATGCAAGGGGCTGCGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 72 bp GGCAGAGGGCAGAGGGCTCCTACGGTATCTGTCCTATaGCTCGATGAAGCAGCTTTCAGACAAGAGACTTGG +
Preference number: 3 (lower is better)
Translates to: GRGQRAPTVSVL*LDEAAFRQETW
Trigger: CCAAGTCTCTTGTCTGAAAGCTGCTTCATCGAGGCATAGGACAGATACCGTAGGAGCCCTCTGCCCTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 72 bp TGCCTTCCTGTAAACATGGCTTGCACCAGGATACCCTaGGGCCAAGGAAGCTGCTCGACAGATCTGCAAACC +
Preference number: 3 (lower is better)
Translates to: CLPVNMACTRIP*GQGSCSTDLQT
Trigger: GGTTTGCAGATCTGTCGAGCAGCTTCCTTGGCCCCAGGGTATCCTGGTGCAAGCCATGTTTACAGGAAGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 72 bp ACACAGGAGGACAGAGGCTGCTCCGAGGGGGAGGCCTaGGTTTGGATAGGAGTGTCCTGTATTGTTGAAAGA +
Preference number: 3 (lower is better)
Translates to: TQEDRGCSEGEA*VWIGVSCIVER
Trigger: TCTTTCAACAATACAGGACACTCCTATCCAAACCCAGGCCTCCCCCTCGGAGCAGCCTCTGTCCTCCTGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 72 bp TTTAGCCAGTCCTCCATTCAGGTCCTGGGGTTGCTCTaGGGCTCCTCTGAGGAAAAGAGGCAGTTAGCACGT +
Preference number: 3 (lower is better)
Translates to: FSQSSIQVLGLL*GSSEEKRQLAR
Trigger: ACGTGCTAACTGCCTCTTTTCCTCAGAGGAGCCCCAGAGCAACCCCAGGACCTGAATGGAGGACTGGCTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 72 bp TCTGGAACAAACTCTCACAGGCCCTCTTGCCTTGAATaGCTCACCGTGTCTAACGAGTACCCGAGGCTCCCA +
Preference number: 3 (lower is better)
Translates to: SGTNSHRPSCLE*LTVSNEYPRLP
Trigger: TGGGAGCCTCGGGTACTCGTTAGACACGGTGAGCCATTCAAGGCAAGAGGGCCTGTGAGAGTTTGTTCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 72 bp GAGGACAGAGGCTGCTCCGAGGGGGAGGCCTGGGTTTaGATAGGAGTGTCCTGTATTGTTGAAAGAAAAGAC +
Preference number: 3 (lower is better)
Translates to: EDRGCSEGEAWV*IGVSCIVERKD
Trigger: GTCTTTTCTTTCAACAATACAGGACACTCCTATCCAAACCCAGGCCTCCCCCTCGGAGCAGCCTCTGTCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CAA 90 bp GCCCTACCACATGGCATTTCTGAGCGCTGTCTAAGCAGAGGCCAGAAAGAAATGACACTGTTGTCTTCCTaGCCAGGGCAAGGGGTAGCA +
Preference number: 3 (lower is better)
Translates to: ALPHGISERCLSRGQKEMTLLSS*PGQGVA
Trigger: TGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGT...CATTTCTTTCTGGCCTCTGCTTAGACAGCGCTCAGAAATGCCATGTGGTAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 72 bp TTCCACGGGATGCAGAGCAGCCTCCCGGGGCAAGACTaGGTGGTTTCTGAAAAGGTTTATACTTTCAAACCG +
Preference number: 3 (lower is better)
Translates to: FHGMQSSLPGQD*VVSEKVYTFKP
Trigger: CGGTTTGAAAGTATAAACCTTTTCAGAAACCACCCAGTCTTGCCCCGGGAGGCTGCTCTGCATCCCGTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 72 bp TGTGACAAGTGCCAGGCTCTTGTGTCAGAGTGTGAATaGGCATCCCAGCGTTGCCACAGCCAAAATACACTG +
Preference number: 3 (lower is better)
Translates to: CDKCQALVSECE*ASQRCHSQNTL
Trigger: CAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACTCTGACACAAGAGCCTGGCACTTGTCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CAA 90 bp TCTCCTCACCAGTGCCTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTGGCATGCAGGACTTTTaGCATATGGATATATATTTC +
Preference number: 3 (lower is better)
Translates to: SPHQCLWRSNTPPQAPALGMQDF*HMDIYF
Trigger: GAAATATATATCCATATGCAAAAAGTCCTGCATGCC...AAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACTGGTGAGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CAA 90 bp TCTCCTCACCAGTGCCTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTTATTCAAGCAGATTATaGTCTACACATCCTAGGATG +
Preference number: 3 (lower is better)
Translates to: SPHQCLWRSNTPPQAPALYSSRL*STHPRM
Trigger: CATCCTAGGATGTGTAGACAATAATCTGCTTGAATA...AAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACTGGTGAGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 72 bp GTCCCTGTGGAGGACTTGAGCATCCAGTGTCAGCTCTaGATCATCTGCACTTCAGCTTTACTTGGGGAAACG +
Preference number: 3 (lower is better)
Translates to: VPVEDLSIQCQL*IICTSALLGET
Trigger: CGTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGGATGCTCAAGTCCTCCACAGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 72 bp AATAACGCTCTCTACTGCAGCATCAGCCCTGATGCCTaGGTCACTGTTGGGGAACCTGGAAGAGAAGTTGCA +
Preference number: 3 (lower is better)
Translates to: NNALYCSISPDA*VTVGEPGREVA
Trigger: TGCAACTTCTCTTCCAGGTTCCCCAACAGTGACTCAGGCATCAGGGCTGATGCTGCAGTAGAGAGCGTTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 72 bp CCGCAGCCCCTTGCATACACTGAGAAGACCCTGTTTTaGATATGGCCTCTGGAGTTCGTAAGGCATAGATTG +
Preference number: 3 (lower is better)
Translates to: PQPLAYTEKTLF*IWPLEFVRHRL
Trigger: CAATCTATGCCTTACGAACTCCAGAGGCCATATGCAAAACAGGGTCTTCTCAGTGTATGCAAGGGGCTGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 72 bp ACGGGATGCAGAGCAGCCTCCCGGGGCAAGACTGGGTaGTTTCTGAAAAGGTTTATACTTTCAAACCGTTGT +
Preference number: 3 (lower is better)
Translates to: TGCRAASRGKTG*FLKRFILSNRC
Trigger: ACAACGGTTTGAAAGTATAAACCTTTTCAGAAACCACCCAGTCTTGCCCCGGGAGGCTGCTCTGCATCCCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CAA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGTTTCCATGGGAGCGTTaGGCACTGAATGTGAGTCTA +
Preference number: 3 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPFPWER*ALNVSL
Trigger: TAGACTCACATTCAGTGCCAAACGCTCCCATGGAAA...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 72 bp ACCTTCAAAGAAGCAGGCCCTACCACATGGCATTTCTaGGCGCTGTCTAAGCAGAGGCCAGAAAGAAATGCT +
Preference number: 3 (lower is better)
Translates to: TFKEAGPTTWHF*ALSKQRPERNA
Trigger: AGCATTTCTTTCTGGCCTCTGCTTAGACAGCGCTCAGAAATGCCATGTGGTAGGGCCTGCTTCTTTGAAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 72 bp CTGAGGGATTCCAGGGAAGGACAGACTGGGGACGTCTaGATTCCACTTAAAGAACTTAGATTCTGGTCCCCA +
Preference number: 3 (lower is better)
Translates to: LRDSREGQTGDV*IPLKELRFWSP
Trigger: TGGGGACCAGAATCTAAGTTCTTTAAGTGGAATTCAGACGTCCCCAGTCTGTCCTTCCCTGGAATCCCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 72 bp CCCAACATCAGACTTTTCTGGATAACCTTGCACAGCTaGAGTGGTCTCCAGGCTGCTGAACAGAAGCAGATA +
Preference number: 3 (lower is better)
Translates to: PNIRLFWITLHS*SGLQAAEQKQI
Trigger: TATCTGCTTCTGTTCAGCAGCCTGGAGACCACTCCAGCTGTGCAAGGTTATCCAGAAAAGTCTGATGTTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CAA 90 bp AAGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAACACTGTTGTCTTCCTaGCCAGGGCAAGGGGTAGCA +
Preference number: 3 (lower is better)
Translates to: KQNSHVNSFQTSSGTRHKTLLSS*PGQGVA
Trigger: TGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGT...TTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CAA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGGTGCAAGTGGCAAAGTaGACCATTGCTGTACAGTAT +
Preference number: 3 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPVQVAK*TIAVQY
Trigger: ATACTGTACAGCAATGGTCAACTTTGCCACTTGCAC...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 72 bp GAGGGTAGAGGGAGAGGAATATCTGAGGATAAACCTTaGTCCTTGCTCTCTTCTAGAGCTGAGATTCCCCCT +
Preference number: 3 (lower is better)
Translates to: EGRGRGISEDKP*SLLSSRAEIPP
Trigger: AGGGGGAATCTCAGCTCTAGAAGAGAGCAAGGATCAAGGTTTATCCTCAGATATTCCTCTCCCTCTACCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 72 bp CCCATGATTCGCAAGGAGCTAAACGTTAGCTTTACCTaGTTTTCATGGAGACATGCCTCTGGTGAAGGGAAC +
Preference number: 3 (lower is better)
Translates to: PMIRKELNVSFT*FSWRHASGEGN
Trigger: GTTCCCTTCACCAGAGGCATGTCTCCATGAAAAGCAGGTAAAGCTAACGTTTAGCTCCTTGCGAATCATGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 72 bp GAGGGAGAGGAATATCTGAGGATAAACCTTGATCCTTaGTCTCTTCTAGAGCTGAGATTCCCCCTCCACTGT +
Preference number: 3 (lower is better)
Translates to: EGEEYLRINLDP*SLLELRFPLHC
Trigger: ACAGTGGAGGGGGAATCTCAGCTCTAGAAGAGAGCAAGGATCAAGGTTTATCCTCAGATATTCCTCTCCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CAA 90 bp CCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGTGGGGTCAGGGATGAGAAAATaGAGGCATGCAGGACTTTTT +
Preference number: 3 (lower is better)
Translates to: PVSALNHLHFSFTWGNVGSGMRK*RHAGLF
Trigger: AAAAAGTCCTGCATGCCTCAATTTTCTCATCCCTGA...CCCCACGTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 72 bp ATGAGAGGTACGGAGGGTTATACAGGTAGATATGTGTaGAAACTGTCCGTATTGTTCAGCTGGGGAGGAGAG +
Preference number: 3 (lower is better)
Translates to: MRGTEGYTGRYV*KLSVLFSWGGE
Trigger: CTCTCCTCCCCAGCTGAACAATACGGACAGTTTTCACACATATCTACCTGTATAACCCTCCGTACCTCTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 72 bp CAACGATGGCAGCTCCAACATAGCTGTATCAAAATCTaGACACACACACACACACACACACACACACACTCT +
Preference number: 3 (lower is better)
Translates to: QRWQLQHSCIKI*THTHTHTHTHS
Trigger: AGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGATTTTGATACAGCTATGTTGGAGCTGCCATCGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 72 bp AACGCATCTGCAATCTTCCTGATAATTTGTGACAAGTaGCAGGCTCTTGTGTCAGAGTGTGAATGGGCATCC +
Preference number: 3 (lower is better)
Translates to: NASAIFLIICDK*QALVSECEWAS
Trigger: GGATGCCCATTCACACTCTGACACAAGAGCCTGGCACTTGTCACAAATTATCAGGAAGATTGCAGATGCGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 72 bp ACGGACATGCCCCGTGAGCAACTACACAAAGCCAGTTaGTGTTCCTGGTGGATACTGAATAAAATTACTTGT +
Preference number: 3 (lower is better)
Translates to: TDMPREQLHKAS*CSWWILNKITC
Trigger: ACAAGTAATTTTATTCAGTATCCACCAGGAACAGCAACTGGCTTTGTGTAGTTGCTCACGGGGCATGTCCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 72 bp AACCAAAGCTATAAAAGTTGGGCCTCTGCGACCAAGTaGGATATTCTCCACGAAATGGCAGCATCATTTCCT +
Preference number: 3 (lower is better)
Translates to: NQSYKSWASATK*DILHEMAASFP
Trigger: AGGAAATGATGCTGCCATTTCGTGGAGAATATCCCACTTGGTCGCAGAGGCCCAACTTTTATAGCTTTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 72 bp ATGCACAAATATATCCTATGCTACAGCATCAGTCTTTaGCACTTGGGTCGTGAGATGGCTCGGGCAGTATTA +
Preference number: 3 (lower is better)
Translates to: MHKYILCYSISL*HLGREMARAVL
Trigger: TAATACTGCCCGAGCCATCTCACGACCCAAGTGTCAAAGACTGATGCTGTAGCATAGGATATATTTGTGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 72 bp GGGCCTCTGCGACCAAGTGGGATATTCTCCACGAAATaGCAGCATCATTTCCTATTACAATTAAAATGCACT +
Preference number: 3 (lower is better)
Translates to: GPLRPSGIFSTK*QHHFLLQLKCT
Trigger: AGTGCATTTTAATTGTAATAGGAAATGATGCTGCCATTTCGTGGAGAATATCCCACTTGGTCGCAGAGGCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 72 bp TGTAGAAAAACACCTGATGTAACCTGTTACAGTCGTTaGCCAGTTATGAGAGGTACGGAGGGTTATACAGGT +
Preference number: 3 (lower is better)
Translates to: CRKTPDVTCYSR*PVMRGTEGYTG
Trigger: ACCTGTATAACCCTCCGTACCTCTCATAACTGGTCAACGACTGTAACAGGTTACATCAGGTGTTTTTCTACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 72 bp ACTTCCTTTAAGAATTACCAACCCCACGAGGCATTGTaGACTGACTTGCCAGAAATGGAATCTGCAACAAAA +
Preference number: 3 (lower is better)
Translates to: TSFKNYQPHEAL*TDLPEMESATK
Trigger: TTTTGTTGCAGATTCCATTTCTGGCAAGTCAGTCCACAATGCCTCGTGGGGTTGGTAATTCTTAAAGGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CAA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATGCATTGTGGACTGACTaGCCAGAAATGGAATCTGCA +
Preference number: 3 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHALWTD*PEMESA
Trigger: TGCAGATTCCATTTCTGGCAAGTCAGTCCACAATGC...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR GCA 72 bp AACTGGAATGAAAATGACAGCCAAGAGTTTATCCATTaGTTGAGAGAGAAACGCATACACCATGCCACAACA +
Preference number: 3 (lower is better)
Translates to: NWNENDSQEFIH*LREKRIHHATT
Trigger: TGTTGTGGCATGGTGTATGCGTTTCTCTCTCAAGCAATGGATAAACTCTTGGCTGTCATTTTCATTCCAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 72 bp GTCACTGTTGGGGAACCTGGAAGAGAAGTTGCAGGATaGTCTAGTAACTTTGCTAACTTTAGAAAAAGCTTT +
Preference number: 3 (lower is better)
Translates to: VTVGEPGREVAG*SSNFANFRKSF
Trigger: AAAGCTTTTTCTAAAGTTAGCAAAGTTACTAGACCATCCTGCAACTTCTCTTCCAGGTTCCCCAACAGTGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CCA 72 bp AATATATCCTATGCTACAGCATCAGTCTTTGACACTTaGGTCGTGAGATGGCTCGGGCAGTATTATACATTT +
Preference number: 3 (lower is better)
Translates to: NISYATASVFDT*VVRWLGQYYTF
Trigger: AAATGTATAATACTGCCCGAGCCATCTCACGACCCAAGTGTCAAAGACTGATGCTGTAGCATAGGATATATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CAA 90 bp AGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAAGGCATGCAGGACTTTTaGCATATGGATATATATTTC +
Preference number: 3 (lower is better)
Translates to: SKTAMLTASKPVLAPDTKGMQDF*HMDIYF
Trigger: GAAATATATATCCATATGCAAAAAGTCCTGCATGCC...TTTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CAA 90 bp TCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCCAGATGGAAACCGAATaGTGCAGCAAGCAAAACAGC +
Preference number: 3 (lower is better)
Translates to: SFKKIGLTQNSVQVAKLTQMETE*CSKQNS
Trigger: GCTGTTTTGCTTGCTGCACAATTCGGTTTCCATCTG...GGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CAA 90 bp TCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCTCAGGGATGAGAAAATaGAGGCATGCAGGACTTTTT +
Preference number: 3 (lower is better)
Translates to: SFKKIGLTQNSVQVAKLTSGMRK*RHAGLF
Trigger: AAAAAGTCCTGCATGCCTCAATTTTCTCATCCCTGA...GGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR-3UTR CAA 90 bp ACTTCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGGTAAAAGGTCTGAGATaGAACCTTGAGAAGCATCTC +
Preference number: 3 (lower is better)
Translates to: TSFKKIGLTQNSVQVAKLVKGLR*NLEKHL
Trigger: GAGATGCTTCTCAAGGTTCAATCTCAGACCTTTTAC...CAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGAAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR TCA 72 bp GAATTCCACTTAAAGAACTTAGATTCTGGTCCCCAGTaGGGTCTCCTTTTGAATCAACTCAGAAACAATTTT +
Preference number: 3 (lower is better)
Translates to: EFHLKNLDSGPQ*GLLLNQLRNNF
Trigger: AAAATTGTTTCTGAGTTGATTCAAAAGGAGACCTCACTGGGGACCAGAATCTAAGTTCTTTAAGTGGAATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 72 bp TGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTTaGCTCTGCAGTCCTTCGAGCCATCCGCTCTGTCCC +
Preference number: 4 (lower is better)
Translates to: WRSNTPPQAPAL*LCSPSSHPLCP
Trigger: GGGACAGAGCGGATGGCTCGAAGGACTGCAGAGCAAAAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GGCCGCAGCCCCTTGCATACACTGAGAAGACCCTGTTTTGCATATGGCCTCTGGCCTGCAGAATTCCCATaGTCCTCTTGGGGGCGCTGG +
Preference number: 4 (lower is better)
Translates to: GRSPLHTLRRPCFAYGLWPAEFP*SSWGRW
Trigger: CCAGCGCCCCCAAGAGGACCATGGGAATTCTGCAGG...CCAGAGGCCATATGCAAAACAGGGTCTTCTCAGTGTATGCAAGGGGCTGCGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TCTCCTCACCAGTGCCTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTAAAGCTGATGGGGTCTaGGAGCATCTGGTCTGTGGC +
Preference number: 4 (lower is better)
Translates to: SPHQCLWRSNTPPQAPALKADGV*EHLVCG
Trigger: GCCACAGACCAGATGCTCCCAGACCCCATCAGCTTT...AAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACTGGTGAGGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TCTCCTCACCAGTGCCTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTATCTCCCATCAGGCCTaGTTCCTGATGTTCCGTGGC +
Preference number: 4 (lower is better)
Translates to: SPHQCLWRSNTPPQAPALISHQA*FLMFRG
Trigger: GCCACGGAACATCAGGAACCAGGCCTGATGGGAGAT...AAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACTGGTGAGGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TCTCCTCACCAGTGCCTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTGAGTGGCGACCCCATTaGGAAGTTGGACACATCCTT +
Preference number: 4 (lower is better)
Translates to: SPHQCLWRSNTPPQAPALEWRPH*EVGHIL
Trigger: AAGGATGTGTCCAACTTCGCAATGGGGTCGCCACTC...AAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACTGGTGAGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp GACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAGTTGCACACGGGGAGGGTaGAAGGCTCTGCTCAACACC +
Preference number: 4 (lower is better)
Translates to: DRGRRISEFEASLVYRVSCTRGG*KALLNT
Trigger: GGTGTTGAGCAGAGCCTTGCACCCTCCCCGTGTGCA...ACTCACTCTGTAGACTAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGGCCAGCACAGCCCGGTaGGCTCGGAACTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRASTAR*ARNSFL
Trigger: GAGGAAGGAGTTCCGAGCCCACCGGGCTGTGCTGGC...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTCTTCAAGACACAGATGAACAGCGCCACTGGCTGGCAGAAGAACACCCAGATGGCCAGCACAGCCCGGTaGGCTCGGAACTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: FFKTQMNSATGWQKNTQMASTAR*ARNSFL
Trigger: GAGGAAGGAGTTCCGAGCCCACCGGGCTGTGCTGGC...CATCTGGGTGTTCTTCTGCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTCTTCAAGACACAGATGAACAGCGCCACTGGCTGGCAGAAGAACACCCAGATGGCGAGGACACACTCCTaGACCTGTCCAGGCAGGCGG +
Preference number: 4 (lower is better)
Translates to: FFKTQMNSATGWQKNTQMARTHS*TCPGRR
Trigger: CCGCCTGCCTGGACAGGTCCAGGAGTGTGTCCTCGC...CATCTGGGTGTTCTTCTGCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TCTCCTCACCAGTGCCTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTACCCCATTGCGAAGTTaGACACATCCTTCTGGCCCA +
Preference number: 4 (lower is better)
Translates to: SPHQCLWRSNTPPQAPALTPLRS*THPSGP
Trigger: TGGGCCAGAAGGATGTGTCCAACTTCGCAATGGGGT...AAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACTGGTGAGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp GACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAGTGCCAGAAGTATTCACTaGATGCGGCCAGCACAGCCC +
Preference number: 4 (lower is better)
Translates to: DRGRRISEFEASLVYRVSARSIH*MRPAQP
Trigger: GGGCTGTGCTGGCCGCATGCAGTGAATACTTCTGGC...ACTCACTCTGTAGACTAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTCGACACTGTTGTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTACCGTGGCAAGGAATCTaGCTCCCTGGGAACAGGGCG +
Preference number: 4 (lower is better)
Translates to: VDTVVFLARARGSTIMKVPWQGI*LPGNRA
Trigger: CGCCCTGTTCCCAGGGAGCCAGATTCCTTGCCACGG...TACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGTCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp CCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGTGGGGGAGCTGGGGAGGGACTaGCCAGCTCCCACCCATAGA +
Preference number: 4 (lower is better)
Translates to: PVSALNHLHFSFTWGNVGELGRD*PAPTHR
Trigger: TCTATGGGTGGGAGCTGGCCAGTCCCTCCCCAGCTC...CCCCACGTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TCTCCTCACCAGTGCCTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTCGTCTGTCCAACCAGTaGTTGCCAGAAGTATTCACT +
Preference number: 4 (lower is better)
Translates to: SPHQCLWRSNTPPQAPALRLSNQ*LPEVFT
Trigger: AGTGAATACTTCTGGCAAGCACTGGTTGGACAGACG...AAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACTGGTGAGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp GTCGACACTGTTGTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTATCCTGGCCCCTGTCCTaGACAGGACACGACTCACTG +
Preference number: 4 (lower is better)
Translates to: VDTVVFLARARGSTIMKVSWPLS*TGHDSL
Trigger: CAGTGAGTCGTGTCCTGTGCAGGACAGGGGCCAGGA...TACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGTCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TTCTTCAAGACACAGATGAACAGCGCCACTGGCTGGCAGAAGAACACCCAGATGTCCTGGCCCCTGTCCTaGACAGGACACGACTCACTG +
Preference number: 4 (lower is better)
Translates to: FFKTQMNSATGWQKNTQMSWPLS*TGHDSL
Trigger: CAGTGAGTCGTGTCCTGTGCAGGACAGGGGCCAGGA...CATCTGGGTGTTCTTCTGCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp GTCGACACTGTTGTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAAGCGCTGGGCTGCAATaGGGTTCTTACTCCGCCTCC +
Preference number: 4 (lower is better)
Translates to: VDTVVFLARARGSTIMKVSAGLQ*GSYSAS
Trigger: GGAGGCGGAGTAAGAACCGCATTGCAGCCCAGCGCT...TACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGTCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp CCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGTGGGGAGCGCTGGGCTGCAATaGGGTTCTTACTCCGCCTCC +
Preference number: 4 (lower is better)
Translates to: PVSALNHLHFSFTWGNVGSAGLQ*GSYSAS
Trigger: GGAGGCGGAGTAAGAACCGCATTGCAGCCCAGCGCT...CCCCACGTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTGCACACGGGGAGGGTaGAAGGCTCTGCTCAACACC +
Preference number: 4 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRCTRGG*KALLNT
Trigger: GGTGTTGAGCAGAGCCTTGCACCCTCCCCGTGTGCA...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GAGCATCCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGCGAGGACACACTCCTaGACCTGTCCAGGCAGGCGG +
Preference number: 4 (lower is better)
Translates to: EHPVSALNHLHFSFTWGNARTHS*TCPGRR
Trigger: CCGCCTGCCTGGACAGGTCCAGGAGTGTGTCCTCGC...GTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGGATGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGACACGCGAGGACACACTCCTaGACCTGTCCAGGCAGGCGG +
Preference number: 4 (lower is better)
Translates to: AAKTAVVCTKFALGSSRHARTHS*TCPGRR
Trigger: CCGCCTGCCTGGACAGGTCCAGGAGTGTGTCCTCGC...GTGTCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGTTGGACACATCCTTCTaGCCCACGTGGGGCTGTCCG +
Preference number: 4 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPLDTSF*PTWGCP
Trigger: CGGACAGCCCCACGTGGGCCAGAAGGATGTGTCCAA...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTTGGCACCGGGCAGCTaGTGTTGGGCCGTATCCTTC +
Preference number: 4 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRLAPGS*CWAVSF
Trigger: GAAGGATACGGCCCAACACCAGCTGCCCGGTGCCAA...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 72 bp CTGGTTCTGGAACAAACTCTCACAGGCCCTCTTGCCTaGAATGGCTCACCGTGTCTAACGAGTACCCGAGGC +
Preference number: 4 (lower is better)
Translates to: LVLEQTLTGPLA*NGSPCLTSTRG
Trigger: GCCTCGGGTACTCGTTAGACACGGTGAGCCATTCAAGGCAAGAGGGCCTGTGAGAGTTTGTTCCAGAACCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp GTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAACTAGCACTCCTACTCAGCACAGCGGATaGCCTCCCGGATGTTCTCTC +
Preference number: 4 (lower is better)
Translates to: VFLARARGSTIMKVTSTPTQHSG*PPGCSL
Trigger: GAGAGAACATCCGGGAGGTCATCCGCTGTGCTGAGT...AGGAGTGCTAGTTACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGGAGAGATCCCCTTGTTaGAAGGGCACGCTGAGCTCC +
Preference number: 4 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPERSPC*KGTLSS
Trigger: GGAGCTCAGCGTGCCCTTTCAACAAGGGGATCTCTC...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp GACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAGTTCCGGATGTCGTGGATaGACTCCAACTGTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: DRGRRISEFEASLVYRVSSGCRG*TPTVLR
Trigger: CCTCAGAACAGTTGGAGTTCATCCACGACATCCGGA...ACTCACTCTGTAGACTAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGGCCAGAAGTATTCACTaGATGCGGCCAGCACAGCCC +
Preference number: 4 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRARSIH*MRPAQP
Trigger: GGGCTGTGCTGGCCGCATGCAGTGAATACTTCTGGC...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp CCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGTGGGGGAGGGTGCAAGGCTCTaGTCAACACCCACAGGAGGA +
Preference number: 4 (lower is better)
Translates to: PVSALNHLHFSFTWGNVGEGARL*STPTGG
Trigger: TCCTCCTGTGGGTGTTGAGCAGAGCCTTGCACCCTC...CCCCACGTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp CCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGTGGGGTCCAGCTCTCCCTCCTaGTTACAGAGAGTCTCCGGC +
Preference number: 4 (lower is better)
Translates to: PVSALNHLHFSFTWGNVGSSSPS*LQRVSG
Trigger: GCCGGAGACTCTCTGTAAGCAGGAGGGAGAGCTGGA...CCCCACGTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp CCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGTGGGGTTGGTCACACGCGCTTaGGGAGAAGATGACGCTCCG +
Preference number: 4 (lower is better)
Translates to: PVSALNHLHFSFTWGNVGLVTRA*GEDDAP
Trigger: CGGAGCGTCATCTTCTCCGCAAGCGCGTGTGACCAA...CCCCACGTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GCCCTACCACATGGCATTTCTGAGCGCTGTCTAAGCAGAGGCCAGAAAGAAATGAGGAATCTGGCTCCCTaGGAACAGGGCGAAGAGGAG +
Preference number: 4 (lower is better)
Translates to: ALPHGISERCLSRGQKEMRNLAP*EQGEEE
Trigger: CTCCTCTTCGCCCTGTTCCCAGGGAGCCAGATTCCT...CATTTCTTTCTGGCCTCTGCTTAGACAGCGCTCAGAAATGCCATGTGGTAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGAGGAATCTGGCTCCCTaGGAACAGGGCGAAGAGGAG +
Preference number: 4 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPRNLAP*EQGEEE
Trigger: CTCCTCTTCGCCCTGTTCCCAGGGAGCCAGATTCCT...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGGGGCCGTATCCTTCCTaGCAAGTGGTCAGCCATCAG +
Preference number: 4 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRGPYPS*QVVSHQ
Trigger: CTGATGGCTGACCACTTGCCAGGAAGGATACGGCCC...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GAGCATCCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACCCGGGCAGCTGGTGTTaGGCCGTATCCTTCCTGGCA +
Preference number: 4 (lower is better)
Translates to: EHPVSALNHLHFSFTWGNPGSWC*AVSFLA
Trigger: TGCCAGGAAGGATACGGCCCAACACCAGCTGCCCGG...GTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGGATGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp GTCGACACTGTTGTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTACTGACTAAGGGTTGCTaGGATGTACTGGGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: VDTVVFLARARGSTIMKVLTKGC*DVLGRP
Trigger: TGGCCTGCCCAGTACATCTCAGCAACCCTTAGTCAG...TACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGTCGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp GTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAACTAGCACTCCTCTGACTAAGGGTTGCTaGGATGTACTGGGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: VFLARARGSTIMKVTSTPLTKGC*DVLGRP
Trigger: TGGCCTGCCCAGTACATCTCAGCAACCCTTAGTCAG...AGGAGTGCTAGTTACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGGGGAGGTCCTCGTTCTaGGAATGTTCCAGGGTCACT +
Preference number: 4 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRGRSSF*ECSRVT
Trigger: AGTGACCCTGGAACATTCTCAGAACGAGGACCTCCC...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp GGCCGCAGCCCCTTGCATACACTGAGAAGACCCTGTTTTGCATATGGCCTCTGGACGCACTGTCCTTTCTaGAAACAAACAGGCCATCCT +
Preference number: 4 (lower is better)
Translates to: GRSPLHTLRRPCFAYGLWTHCPF*KQTGHP
Trigger: AGGATGGCCTGTTTGTTTGCAGAAAGGACAGTGCGT...CCAGAGGCCATATGCAAAACAGGGTCTTCTCAGTGTATGCAAGGGGCTGCGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp GTCGACACTGTTGTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTATGCAGGGCCTGGATCTaGTCTGGACTCTGGATGTCT +
Preference number: 4 (lower is better)
Translates to: VDTVVFLARARGSTIMKVCRAWI*SGLWMS
Trigger: AGACATCCAGAGTCCAGAGCAGATCCAGGCCCTGCA...TACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGTCGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGTGCAGGGCCTGGATCTaGTCTGGACTCTGGATGTCT +
Preference number: 4 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPCRAWI*SGLWMS
Trigger: AGACATCCAGAGTCCAGAGCAGATCCAGGCCCTGCA...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp CTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTTGCATCAGACTGGTTCTGGAGAGGGTGCAAGGCTCTaGTCAACACCCACAGGAGGA +
Preference number: 4 (lower is better)
Translates to: LEFVRHRLEVHLHQTGSGEGARL*STPTGG
Trigger: TCCTCCTGTGGGTGTTGAGCAGAGCCTTGCACCCTC...TCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp CCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGTGGGGATGTTCCAGGGTCACTaGCTTCCAACCTCCTCCCAG +
Preference number: 4 (lower is better)
Translates to: PVSALNHLHFSFTWGNVGMFQGH*LPTSSQ
Trigger: CTGGGAGGAGGTTGGAAGGCAGTGACCCTGGAACAT...CCCCACGTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp GTCGACACTGTTGTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAATGTTCCAGGGTCACTaGCTTCCAACCTCCTCCCAG +
Preference number: 4 (lower is better)
Translates to: VDTVVFLARARGSTIMKVMFQGH*LPTSSQ
Trigger: CTGGGAGGAGGTTGGAAGGCAGTGACCCTGGAACAT...TACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGTCGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAGTGGTCTCCTCACTGGGTaGCTCACTTTTAATCTGTCC +
Preference number: 4 (lower is better)
Translates to: DRGRRISEFEASLVYRVSGLLTG*LTFNLS
Trigger: GGACAGATTAAAAGTGAGCCACCCAGTGAGGAGACC...ACTCACTCTGTAGACTAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTCTTCAAGACACAGATGAACAGCGCCACTGGCTGGCAGAAGAACACCCAGATGGTTGCTGAGATGTACTaGGCAGGCCAGTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: FFKTQMNSATGWQKNTQMVAEMY*AGQWTP
Trigger: TGGAGTCCACTGGCCTGCCCAGTACATCTCAGCAAC...CATCTGGGTGTTCTTCTGCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGGTTGCTGAGATGTACTaGGCAGGCCAGTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRVAEMY*AGQWTP
Trigger: TGGAGTCCACTGGCCTGCCCAGTACATCTCAGCAAC...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AAGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAACCCGGGCCCCCTGAGTaGCGACCCCATTGCGAAGTT +
Preference number: 4 (lower is better)
Translates to: KQNSHVNSFQTSSGTRHKPGPPE*RPHCEV
Trigger: AACTTCGCAATGGGGTCGCCACTCAGGGGGCCCGGG...TTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp ATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGACCCGGGCCCCCTGAGTaGCGACCCCATTGCGAAGTT +
Preference number: 4 (lower is better)
Translates to: IAAKTAVVCTKFALGSSRPGPPE*RPHCEV
Trigger: AACTTCGCAATGGGGTCGCCACTCAGGGGGCCCGGG...TCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGATCTCCCATCAGGCCTaGTTCCTGATGTTCCGTGGC +
Preference number: 4 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRISHQA*FLMFRG
Trigger: GCCACGGAACATCAGGAACCAGGCCTGATGGGAGAT...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTCGACACTGTTGTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAGGCCTGGATCTGCTCTaGACTCTGGATGTCTCGACA +
Preference number: 4 (lower is better)
Translates to: VDTVVFLARARGSTIMKVGLDLL*TLDVST
Trigger: TGTCGAGACATCCAGAGTCCAGAGCAGATCCAGGCC...TACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGTCGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GCCCTACCACATGGCATTTCTGAGCGCTGTCTAAGCAGAGGCCAGAAAGAAATGGGCCTGGATCTGCTCTaGACTCTGGATGTCTCGACA +
Preference number: 4 (lower is better)
Translates to: ALPHGISERCLSRGQKEMGLDLL*TLDVST
Trigger: TGTCGAGACATCCAGAGTCCAGAGCAGATCCAGGCC...CATTTCTTTCTGGCCTCTGCTTAGACAGCGCTCAGAAATGCCATGTGGTAGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAATCTCAGAGGTGTTGCTaGGCACCCAGGGGAGCCCGG +
Preference number: 4 (lower is better)
Translates to: SKTAMLTASKPVLAPDTKSQRCC*APRGAR
Trigger: CCGGGCTCCCCTGGGTGCCCAGCAACACCTCTGAGA...TTTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp CCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGTGGGGATCCTTCCTGGCAAGTaGTCAGCCATCAGTCCGCTG +
Preference number: 4 (lower is better)
Translates to: PVSALNHLHFSFTWGNVGILPGK*SAISPL
Trigger: CAGCGGACTGATGGCTGACCACTTGCCAGGAAGGAT...CCCCACGTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp CTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTTGCATCAGACTGGTTCTGGATCTTCCGTTGGTCATTaGGGCCCAGGAGGATGTTGG +
Preference number: 4 (lower is better)
Translates to: LEFVRHRLEVHLHQTGSGSSVGH*GPGGCW
Trigger: CCAACATCCTCCTGGGCCTCAATGACCAACGGAAGA...TCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp GCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGACACACTCAGCACAGCGGATaGCCTCCCGGATGTTCTCTC +
Preference number: 4 (lower is better)
Translates to: AAKTAVVCTKFALGSSRHTQHSG*PPGCSL
Trigger: GAGAGAACATCCGGGAGGTCATCCGCTGTGCTGAGT...GTGTCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGTATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCACGGACAGGCAGAGGGTaGTGCTCTCCTCCTCGGTCT +
Preference number: 4 (lower is better)
Translates to: SIAAKTAVVCTKFALGSSRTGRG*CSPPRS
Trigger: AGACCGAGGAGGAGAGCATCACCCTCTGCCTGTCCG...TGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAATACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAACGGACAGGCAGAGGGTaGTGCTCTCCTCCTCGGTCT +
Preference number: 4 (lower is better)
Translates to: SKTAMLTASKPVLAPDTKRTGRG*CSPPRS
Trigger: AGACCGAGGAGGAGAGCATCACCCTCTGCCTGTCCG...TTTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp GTCGACACTGTTGTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAATCAGGCCTGGTTCCTaGTGTTCCGTGGCAAGGAAT +
Preference number: 4 (lower is better)
Translates to: VDTVVFLARARGSTIMKVIRPGS*CSVARN
Trigger: ATTCCTTGCCACGGAACATCAGGAACCAGGCCTGAT...TACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGTCGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TTCTTCAAGACACAGATGAACAGCGCCACTGGCTGGCAGAAGAACACCCAGATGGAGTCCTCCAGATTGTaGATGCGCAGGAACTCAGCA +
Preference number: 4 (lower is better)
Translates to: FFKTQMNSATGWQKNTQMESSRL*MRRNSA
Trigger: TGCTGAGTTCCTGCGCATGCACAATCTGGAGGACTC...CATCTGGGTGTTCTTCTGCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp GAGCATCCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACCCCACTCCCGTCCTCTaGGTAGGAATACGAGGAGCA +
Preference number: 4 (lower is better)
Translates to: EHPVSALNHLHFSFTWGNPTPVL*VGIRGA
Trigger: TGCTCCTCGTATTCCTACGCAGAGGACGGGAGTGGG...GTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGGATGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GGCCGCAGCCCCTTGCATACACTGAGAAGACCCTGTTTTGCATATGGCCTCTGGAGGATGTTGGCACAGTaGACTGTGGACTCATATACA +
Preference number: 4 (lower is better)
Translates to: GRSPLHTLRRPCFAYGLWRMLAQ*TVDSYT
Trigger: TGTATATGAGTCCACAGTCCACTGTGCCAACATCCT...CCAGAGGCCATATGCAAAACAGGGTCTTCTCAGTGTATGCAAGGGGCTGCGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAACTAGCACTCCTATGTCCTTCTTCCGTTaGTCATTGAGGCCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: VFLARARGSTIMKVTSTPMSFFR*SLRPRR
Trigger: CCTCCTGGGCCTCAATGACCAACGGAAGAAGGACAT...AGGAGTGCTAGTTACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAGTCATCTCGACATCTCCTaGTCTGTCTTTGATGTCGGT +
Preference number: 4 (lower is better)
Translates to: DRGRRISEFEASLVYRVSHLDIS*SVFDVG
Trigger: ACCGACATCAAAGACAGACCAGGAGATGTCGAGATG...ACTCACTCTGTAGACTAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAACTAGCACTCCTTACTGGGCAGGCCAGTaGACTCCACACCTTTCGTTA +
Preference number: 4 (lower is better)
Translates to: VFLARARGSTIMKVTSTPYWAGQ*TPHLSL
Trigger: TAACGAAAGGTGTGGAGTCCACTGGCCTGCCCAGTA...AGGAGTGCTAGTTACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAACTAGCACTCCTACCCCATTGCGAAGTTaGACACATCCTTCTGGCCCA +
Preference number: 4 (lower is better)
Translates to: VFLARARGSTIMKVTSTPTPLRS*THPSGP
Trigger: TGGGCCAGAAGGATGTGTCCAACTTCGCAATGGGGT...AGGAGTGCTAGTTACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp ATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGACCGTGGCAAGGAATCTaGCTCCCTGGGAACAGGGCG +
Preference number: 4 (lower is better)
Translates to: IAAKTAVVCTKFALGSSRPWQGI*LPGNRA
Trigger: CGCCCTGTTCCCAGGGAGCCAGATTCCTTGCCACGG...TCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAACTAGCACTCCTGTTCCTGATGTTCCGTaGCAAGGAATCTGGCTCCCT +
Preference number: 4 (lower is better)
Translates to: VFLARARGSTIMKVTSTPVPDVP*QGIWLP
Trigger: AGGGAGCCAGATTCCTTGCCACGGAACATCAGGAAC...AGGAGTGCTAGTTACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGCTCTTTCGACAGCGCTaGGCTGCAATGCGGTTCTTA +
Preference number: 4 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRLFRQR*AAMRFL
Trigger: TAAGAACCGCATTGCAGCCCAGCGCTGTCGAAAGAG...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGCTCTTTCGACAGCGCTaGGCTGCAATGCGGTTCTTA +
Preference number: 4 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPLFRQR*AAMRFL
Trigger: TAAGAACCGCATTGCAGCCCAGCGCTGTCGAAAGAG...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AGTATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAGAGCTGGGGAGGGACTaGCCAGCTCCCACCCATAGA +
Preference number: 4 (lower is better)
Translates to: SIAAKTAVVCTKFALGSSELGRD*PAPTHR
Trigger: TCTATGGGTGGGAGCTGGCCAGTCCCTCCCCAGCTC...TGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAATACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp CTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTTGCATCAGACTGGTTCTGGAGTCTGCTTCCGAGAATaGTCCAGACTCGTCACTGGA +
Preference number: 4 (lower is better)
Translates to: LEFVRHRLEVHLHQTGSGVCFRE*SRLVTG
Trigger: TCCAGTGACGAGTCTGGATCATTCTCGGAAGCAGAC...TCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGTATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGCGAGGACAGACTTTaGTTGGCACCGGGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: SIAAKTAVVCTKFALGSSSEDRL*LAPGSW
Trigger: CCAGCTGCCCGGTGCCAATCAAAGTCTGTCCTCGCT...TGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAATACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAAAGCGAGGACAGACTTTaGTTGGCACCGGGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: SKTAMLTASKPVLAPDTKSEDRL*LAPGSW
Trigger: CCAGCTGCCCGGTGCCAATCAAAGTCTGTCCTCGCT...TTTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp CTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTTGCATCAGACTGGTTCTGGAGAGTCCTCCAGATTGTaGATGCGCAGGAACTCAGCA +
Preference number: 4 (lower is better)
Translates to: LEFVRHRLEVHLHQTGSGESSRL*MRRNSA
Trigger: TGCTGAGTTCCTGCGCATGCACAATCTGGAGGACTC...TCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp GTCGACACTGTTGTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTATTCCTCCTCTTCTCCTaGAGAATTCCCATGGTCCTC +
Preference number: 4 (lower is better)
Translates to: VDTVVFLARARGSTIMKVFLLFS*RIPMVL
Trigger: GAGGACCATGGGAATTCTGCAGGAGAAGAGGAGGAA...TACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGTCGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp CCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGTGGGGTTCCTCCTCTTCTCCTaGAGAATTCCCATGGTCCTC +
Preference number: 4 (lower is better)
Translates to: PVSALNHLHFSFTWGNVGFLLFS*RIPMVL
Trigger: GAGGACCATGGGAATTCTGCAGGAGAAGAGGAGGAA...CCCCACGTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp AGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAATCCTGGCCCCTGTCCTaGACAGGACACGACTCACTG +
Preference number: 4 (lower is better)
Translates to: SKTAMLTASKPVLAPDTKSWPLS*TGHDSL
Trigger: CAGTGAGTCGTGTCCTGTGCAGGACAGGGGCCAGGA...TTTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTCTGAGATTGAACCTTTGCACACGGGGAGGGTaGAAGGCTCTGCTCAACACC +
Preference number: 4 (lower is better)
Translates to: FGGTKTKPTKVKGLRLNLCTRGG*KALLNT
Trigger: GGTGTTGAGCAGAGCCTTGCACCCTCCCCGTGTGCA...AAGGTTCAATCTCAGACCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAGTAGGATGTTGGCACAGTaGACTGTGGACTCATATACA +
Preference number: 4 (lower is better)
Translates to: DRGRRISEFEASLVYRVSRMLAQ*TVDSYT
Trigger: TGTATATGAGTCCACAGTCCACTGTGCCAACATCCT...ACTCACTCTGTAGACTAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTCTGAGATTGAACCTTCCTGCAGAATTCCCATaGTCCTCTTGGGGGCGCTGG +
Preference number: 4 (lower is better)
Translates to: FGGTKTKPTKVKGLRLNLPAEFP*SSWGRW
Trigger: CCAGCGCCCCCAAGAGGACCATGGGAATTCTGCAGG...AAGGTTCAATCTCAGACCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTCGACACTGTTGTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTATTTCCTTGGTGTCTGTaGGTACCTCAGACTCAGGGA +
Preference number: 4 (lower is better)
Translates to: VDTVVFLARARGSTIMKVFPWCL*VPQTQG
Trigger: TCCCTGAGTCTGAGGTACCCACAGACACCAAGGAAA...TACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGTCGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAACTAGCACTCCTTTTCCTTGGTGTCTGTaGGTACCTCAGACTCAGGGA +
Preference number: 4 (lower is better)
Translates to: VFLARARGSTIMKVTSTPFPWCL*VPQTQG
Trigger: TCCCTGAGTCTGAGGTACCCACAGACACCAAGGAAA...AGGAGTGCTAGTTACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAACTAGCACTCCTGGTCTCCTCACTGGGTaGCTCACTTTTAATCTGTCC +
Preference number: 4 (lower is better)
Translates to: VFLARARGSTIMKVTSTPGLLTG*LTFNLS
Trigger: GGACAGATTAAAAGTGAGCCACCCAGTGAGGAGACC...AGGAGTGCTAGTTACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AAGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAATTGGACACATCCTTCTaGCCCACGTGGGGCTGTCCG +
Preference number: 4 (lower is better)
Translates to: KQNSHVNSFQTSSGTRHKLDTSF*PTWGCP
Trigger: CGGACAGCCCCACGTGGGCCAGAAGGATGTGTCCAA...TTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AGTATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCATTGGACACATCCTTCTaGCCCACGTGGGGCTGTCCG +
Preference number: 4 (lower is better)
Translates to: SIAAKTAVVCTKFALGSSLDTSF*PTWGCP
Trigger: CGGACAGCCCCACGTGGGCCAGAAGGATGTGTCCAA...TGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAATACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGATCTGGGGTCGGACTTaGTTGTACATTCCATCTCCC +
Preference number: 4 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRIWGRT*LYIPSP
Trigger: GGGAGATGGAATGTACAACCAAGTCCGACCCCAGAT...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GCCCTACCACATGGCATTTCTGAGCGCTGTCTAAGCAGAGGCCAGAAAGAAATGATCTGGGGTCGGACTTaGTTGTACATTCCATCTCCC +
Preference number: 4 (lower is better)
Translates to: ALPHGISERCLSRGQKEMIWGRT*LYIPSP
Trigger: GGGAGATGGAATGTACAACCAAGTCCGACCCCAGAT...CATTTCTTTCTGGCCTCTGCTTAGACAGCGCTCAGAAATGCCATGTGGTAGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAGTTGCTCACATTTAATCTaGGGTCGGACTTGGTTGTAC +
Preference number: 4 (lower is better)
Translates to: DRGRRISEFEASLVYRVSCSHLI*GRTWLY
Trigger: GTACAACCAAGTCCGACCCCAGATTAAATGTGAGCA...ACTCACTCTGTAGACTAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGACACATCCTTCCTGGCAAGTaGTCAGCCATCAGTCCGCTG +
Preference number: 4 (lower is better)
Translates to: AAKTAVVCTKFALGSSRHILPGK*SAISPL
Trigger: CAGCGGACTGATGGCTGACCACTTGCCAGGAAGGAT...GTGTCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 72 bp CTACCCTATCCCAACATCAGACTTTTCTGGATAACCTaGCACAGCTGGAGTGGTCTCCAGGCTGCTGAACAG +
Preference number: 4 (lower is better)
Translates to: LPYPNIRLFWIT*HSWSGLQAAEQ
Trigger: CTGTTCAGCAGCCTGGAGACCACTCCAGCTGTGCAAGGTTATCCAGAAAAGTCTGATGTTGGGATAGGGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAAACTCAGCACAGCGGATaGCCTCCCGGATGTTCTCTC +
Preference number: 4 (lower is better)
Translates to: SKTAMLTASKPVLAPDTKTQHSG*PPGCSL
Trigger: GAGAGAACATCCGGGAGGTCATCCGCTGTGCTGAGT...TTTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAAGAGAGATCCCCTTGTTaGAAGGGCACGCTGAGCTCC +
Preference number: 4 (lower is better)
Translates to: SKTAMLTASKPVLAPDTKERSPC*KGTLSS
Trigger: GGAGCTCAGCGTGCCCTTTCAACAAGGGGATCTCTC...TTTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp GAGCATCCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACATCAGGCCTGGTTCCTaGTGTTCCGTGGCAAGGAAT +
Preference number: 4 (lower is better)
Translates to: EHPVSALNHLHFSFTWGNIRPGS*CSVARN
Trigger: ATTCCTTGCCACGGAACATCAGGAACCAGGCCTGAT...GTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGGATGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp CCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGTGGGGGGAAGGTCTGTGATCTaGTCGACAGGAAAAGGAAGT +
Preference number: 4 (lower is better)
Translates to: PVSALNHLHFSFTWGNVGGRSVI*STGKGS
Trigger: ACTTCCTTTTCCTGTCGATCAGATCACAGACCTTCC...CCCCACGTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGGGAAGGTCTGTGATCTaGTCGACAGGAAAAGGAAGT +
Preference number: 4 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPGRSVI*STGKGS
Trigger: ACTTCCTTTTCCTGTCGATCAGATCACAGACCTTCC...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp AGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAAGAGGGTGCAAGGCTCTaGTCAACACCCACAGGAGGA +
Preference number: 4 (lower is better)
Translates to: SKTAMLTASKPVLAPDTKEGARL*STPTGG
Trigger: TCCTCCTGTGGGTGTTGAGCAGAGCCTTGCACCCTC...TTTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTCTGAGATTGAACCTTCCCACTCCCGTCCTCTaGGTAGGAATACGAGGAGCA +
Preference number: 4 (lower is better)
Translates to: FGGTKTKPTKVKGLRLNLPTPVL*VGIRGA
Trigger: TGCTCCTCGTATTCCTACGCAGAGGACGGGAGTGGG...AAGGTTCAATCTCAGACCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GCCCTACCACATGGCATTTCTGAGCGCTGTCTAAGCAGAGGCCAGAAAGAAATGTTCTTTCTCTGCTACTaGGATGGCAGTGGCCTCAAA +
Preference number: 4 (lower is better)
Translates to: ALPHGISERCLSRGQKEMFFLCY*DGSGLK
Trigger: TTTGAGGCCACTGCCATCCCAGTAGCAGAGAAAGAA...CATTTCTTTCTGGCCTCTGCTTAGACAGCGCTCAGAAATGCCATGTGGTAGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTTCTTTCTCTGCTACTaGGATGGCAGTGGCCTCAAA +
Preference number: 4 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRFFLCY*DGSGLK
Trigger: TTTGAGGCCACTGCCATCCCAGTAGCAGAGAAAGAA...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp CCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGTGGGGCACTGTAGACATTCTTaGTACACGCGAGCTGGTACT +
Preference number: 4 (lower is better)
Translates to: PVSALNHLHFSFTWGNVGHCRHS*YTRAGT
Trigger: AGTACCAGCTCGCGTGTACCAAGAATGTCTACAGTG...CCCCACGTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTCTTCAAGACACAGATGAACAGCGCCACTGGCTGGCAGAAGAACACCCAGATGCATCTCGACATCTCCTaGTCTGTCTTTGATGTCGGT +
Preference number: 4 (lower is better)
Translates to: FFKTQMNSATGWQKNTQMHLDIS*SVFDVG
Trigger: ACCGACATCAAAGACAGACCAGGAGATGTCGAGATG...CATCTGGGTGTTCTTCTGCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTCTGAGATTGAACCTTAGGAATCTGGCTCCCTaGGAACAGGGCGAAGAGGAG +
Preference number: 4 (lower is better)
Translates to: FGGTKTKPTKVKGLRLNLRNLAP*EQGEEE
Trigger: CTCCTCTTCGCCCTGTTCCCAGGGAGCCAGATTCCT...AAGGTTCAATCTCAGACCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGACTCGTCACTGGAATTaGTTCCGTAAGACTGCTCAC +
Preference number: 4 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRTRHWN*FRKTAH
Trigger: GTGAGCAGTCTTACGGAACCAATTCCAGTGACGAGT...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 72 bp CCTCTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTaGCATCAGACTGGTTCTGGAACAAACTCTCACAGG +
Preference number: 4 (lower is better)
Translates to: PLEFVRHRLEVH*HQTGSGTNSHR
Trigger: CCTGTGAGAGTTTGTTCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGTATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCATCTTCCGTTGGTCATTaGGGCCCAGGAGGATGTTGG +
Preference number: 4 (lower is better)
Translates to: SIAAKTAVVCTKFALGSSSSVGH*GPGGCW
Trigger: CCAACATCCTCCTGGGCCTCAATGACCAACGGAAGA...TGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAATACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGTATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCACCTCCTCAGGCAAGCTaGCCACCAAGTCATCTTTCG +
Preference number: 4 (lower is better)
Translates to: SIAAKTAVVCTKFALGSSPPQAS*PPSHLS
Trigger: CGAAAGATGACTTGGTGGTCAGCTTGCCTGAGGAGG...TGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAATACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AAGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAACCTCCTCAGGCAAGCTaGCCACCAAGTCATCTTTCG +
Preference number: 4 (lower is better)
Translates to: KQNSHVNSFQTSSGTRHKPPQAS*PPSHLS
Trigger: CGAAAGATGACTTGGTGGTCAGCTTGCCTGAGGAGG...TTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGCAATGCACCCTTTTCTaGGTTTTCCTTGGTGTCTGT +
Preference number: 4 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPQCTLF*VFLGVC
Trigger: ACAGACACCAAGGAAAACTCAGAAAAGGGTGCATTG...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp TTCTTCAAGACACAGATGAACAGCGCCACTGGCTGGCAGAAGAACACCCAGATGGTTTTAAGGTCACCCTaGGAGATCCCCTTGTTGAAA +
Preference number: 4 (lower is better)
Translates to: FFKTQMNSATGWQKNTQMVLRSP*EIPLLK
Trigger: TTTCAACAAGGGGATCTCTCAGGGTGACCTTAAAAC...CATCTGGGTGTTCTTCTGCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp GTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAACTAGCACTCCTTCACATTCCAAGTTCTaGATACAGTCCAGCTTCCTC +
Preference number: 4 (lower is better)
Translates to: VFLARARGSTIMKVTSTPSHSKF*IQSSFL
Trigger: GAGGAAGCTGGACTGTATTCAGAACTTGGAATGTGA...AGGAGTGCTAGTTACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGTATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAGGGAGGTCCTCGTTCTaGGAATGTTCCAGGGTCACT +
Preference number: 4 (lower is better)
Translates to: SIAAKTAVVCTKFALGSSGRSSF*ECSRVT
Trigger: AGTGACCCTGGAACATTCTCAGAACGAGGACCTCCC...TGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAATACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp GTCGACACTGTTGTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTATGTCCAACCAGTGCTTaGCAGAAGTATTCACTGCAT +
Preference number: 4 (lower is better)
Translates to: VDTVVFLARARGSTIMKVCPTSA*QKYSLH
Trigger: ATGCAGTGAATACTTCTGGCAAGCACTGGTTGGACA...TACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGTCGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp GAGCATCCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACTTCCTCCTCTTCTCCTaGAGAATTCCCATGGTCCTC +
Preference number: 4 (lower is better)
Translates to: EHPVSALNHLHFSFTWGNFLLFS*RIPMVL
Trigger: GAGGACCATGGGAATTCTGCAGGAGAAGAGGAGGAA...GTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGGATGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGACTCATATACATACATaGGGGAGCCAGGCTTCTCAT +
Preference number: 4 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPTHIHT*GSQASH
Trigger: ATGAGAAGCCTGGCTCCCCCATGTATGTATATGAGT...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTCTTCAAGACACAGATGAACAGCGCCACTGGCTGGCAGAAGAACACCCAGATGTGGCACAGTGGACTGTaGACTCATATACATACATGG +
Preference number: 4 (lower is better)
Translates to: FFKTQMNSATGWQKNTQMWHSGL*THIHTW
Trigger: CCATGTATGTATATGAGTCCACAGTCCACTGTGCCA...CATCTGGGTGTTCTTCTGCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAACTAGCACTCCTTTTCTGAGTTTTCCTTaGTGTCTGTGGGTACCTCAG +
Preference number: 4 (lower is better)
Translates to: VFLARARGSTIMKVTSTPFLSFP*CLWVPQ
Trigger: CTGAGGTACCCACAGACACCAAGGAAAACTCAGAAA...AGGAGTGCTAGTTACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAGTTTATATCTAGGGTACTaGGTCAATGCACCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: DRGRRISEFEASLVYRVSLYLGY*VNAPFS
Trigger: AGAAAAGGGTGCATTGACCCAGTACCCTAGATATAA...ACTCACTCTGTAGACTAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTTTCAGGGATGAGAAAATTGAGGCATGCAGGACTTTTTGCATATGGATATATACCCGGGCCCCCTGAGTaGCGACCCCATTGCGAAGTT +
Preference number: 4 (lower is better)
Translates to: VSGMRKLRHAGLFAYGYIPGPPE*RPHCEV
Trigger: AACTTCGCAATGGGGTCGCCACTCAGGGGGCCCGGG...TATATATCCATATGCAAAAAGTCCTGCATGCCTCAATTTTCTCATCCCTGAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GAGCATCCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACATCTGGGGTCGGACTTaGTTGTACATTCCATCTCCC +
Preference number: 4 (lower is better)
Translates to: EHPVSALNHLHFSFTWGNIWGRT*LYIPSP
Trigger: GGGAGATGGAATGTACAACCAAGTCCGACCCCAGAT...GTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGGATGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp ATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGAGGAAGTTTAACCTCCTaGCCCCTGTCCTGCACAGGA +
Preference number: 4 (lower is better)
Translates to: IAAKTAVVCTKFALGSSRGSLTS*PLSCTG
Trigger: TCCTGTGCAGGACAGGGGCCAGGAGGTTAAACTTCC...TCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTCTGAGATTGAACCTTGGAAGTTTAACCTCCTaGCCCCTGTCCTGCACAGGA +
Preference number: 4 (lower is better)
Translates to: FGGTKTKPTKVKGLRLNLGSLTS*PLSCTG
Trigger: TCCTGTGCAGGACAGGGGCCAGGAGGTTAAACTTCC...AAGGTTCAATCTCAGACCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCTCTCAGAGGTGTTGCTaGGCACCCAGGGGAGCCCGG +
Preference number: 4 (lower is better)
Translates to: SFKKIGLTQNSVQVAKLTSQRCC*APRGAR
Trigger: CCGGGCTCCCCTGGGTGCCCAGCAACACCTCTGAGA...GGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATCCGGGCAGCTGGTGTTaGGCCGTATCCTTCCTGGCA +
Preference number: 4 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHPGSWC*AVSFLA
Trigger: TGCCAGGAAGGATACGGCCCAACACCAGCTGCCCGG...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGTATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAGTCTGCTTCCGAGAATaGTCCAGACTCGTCACTGGA +
Preference number: 4 (lower is better)
Translates to: SIAAKTAVVCTKFALGSSVCFRE*SRLVTG
Trigger: TCCAGTGACGAGTCTGGATCATTCTCGGAAGCAGAC...TGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAATACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AAGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAATCCGGATGTCGTGGATaGACTCCAACTGTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: KQNSHVNSFQTSSGTRHKSGCRG*TPTVLR
Trigger: CCTCAGAACAGTTGGAGTTCATCCACGACATCCGGA...TTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAATCCGGATGTCGTGGATaGACTCCAACTGTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: SKTAMLTASKPVLAPDTKSGCRG*TPTVLR
Trigger: CCTCAGAACAGTTGGAGTTCATCCACGACATCCGGA...TTTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp AGTATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAGAGTCCTCCAGATTGTaGATGCGCAGGAACTCAGCA +
Preference number: 4 (lower is better)
Translates to: SIAAKTAVVCTKFALGSSESSRL*MRRNSA
Trigger: TGCTGAGTTCCTGCGCATGCACAATCTGGAGGACTC...TGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAATACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp AGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAAGAGTGGCGACCCCATTaGGAAGTTGGACACATCCTT +
Preference number: 4 (lower is better)
Translates to: SKTAMLTASKPVLAPDTKEWRPH*EVGHIL
Trigger: AAGGATGTGTCCAACTTCGCAATGGGGTCGCCACTC...TTTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATAGCGCTGGGCTGCAATaGGGTTCTTACTCCGCCTCC +
Preference number: 4 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHSAGLQ*GSYSAS
Trigger: GGAGGCGGAGTAAGAACCGCATTGCAGCCCAGCGCT...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGGGTCTTTGTCCAAATTaGTCACCGCAGAGTATGAAT +
Preference number: 4 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPGLCPN*SPQSMN
Trigger: ATTCATACTCTGCGGTGAGCAATTTGGACAAAGACC...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp ACTTCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGGCCAGCACAGCCCGGTaGGCTCGGAACTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: TSFKKIGLTQNSVQVAKLASTAR*ARNSFL
Trigger: GAGGAAGGAGTTCCGAGCCCACCGGGCTGTGCTGGC...CAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTCTGAGATTGAACCTTTACTGGGCAGGCCAGTaGACTCCACACCTTTCGTTA +
Preference number: 4 (lower is better)
Translates to: FGGTKTKPTKVKGLRLNLYWAGQ*TPHLSL
Trigger: TAACGAAAGGTGTGGAGTCCACTGGCCTGCCCAGTA...AAGGTTCAATCTCAGACCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp CCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGTGGGGATTTTGATCATCATCTaGAAGTCGTTCCTGGGAAGG +
Preference number: 4 (lower is better)
Translates to: PVSALNHLHFSFTWGNVGILIII*KSFLGR
Trigger: CCTTCCCAGGAACGACTTCCAGATGATGATCAAAAT...CCCCACGTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAACTCTTTCGACAGCGCTaGGCTGCAATGCGGTTCTTA +
Preference number: 4 (lower is better)
Translates to: SKTAMLTASKPVLAPDTKLFRQR*AAMRFL
Trigger: TAAGAACCGCATTGCAGCCCAGCGCTGTCGAAAGAG...TTTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTCTGAGATTGAACCTTTCTCGACAGACCTCCTaGGAGAGGCAGGAAAAGTTG +
Preference number: 4 (lower is better)
Translates to: FGGTKTKPTKVKGLRLNLSRQTS*ERQEKL
Trigger: CAACTTTTCCTGCCTCTCCCAGGAGGTCTGTCGAGA...AAGGTTCAATCTCAGACCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTCTGAGATTGAACCTTAGGACAGACTTTGATTaGCACCGGGCAGCTGGTGTT +
Preference number: 4 (lower is better)
Translates to: FGGTKTKPTKVKGLRLNLRTDFD*HRAAGV
Trigger: AACACCAGCTGCCCGGTGCCAATCAAAGTCTGTCCT...AAGGTTCAATCTCAGACCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp GCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGACACCAATGCACCCTTTTCTaGGTTTTCCTTGGTGTCTGT +
Preference number: 4 (lower is better)
Translates to: AAKTAVVCTKFALGSSRHQCTLF*VFLGVC
Trigger: ACAGACACCAAGGAAAACTCAGAAAAGGGTGCATTG...GTGTCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTCGGACAGGCAGAGGGTaGTGCTCTCCTCCTCGGTCT +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTIRTGRG*CSPPRS
Trigger: AGACCGAGGAGGAGAGCATCACCCTCTGCCTGTCCG...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp GAGCATCCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACGTTTTAAGGTCACCCTaGGAGATCCCCTTGTTGAAA +
Preference number: 4 (lower is better)
Translates to: EHPVSALNHLHFSFTWGNVLRSP*EIPLLK
Trigger: TTTCAACAAGGGGATCTCTCAGGGTGACCTTAAAAC...GTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGGATGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TTCTTCAAGACACAGATGAACAGCGCCACTGGCTGGCAGAAGAACACCCAGATGTCTGAGGTTAGCTTGTaGATTTTGATCATCATCTGG +
Preference number: 4 (lower is better)
Translates to: FFKTQMNSATGWQKNTQMSEVSL*ILIIIW
Trigger: CCAGATGATGATCAAAATGCACAAGCTAACCTCAGA...CATCTGGGTGTTCTTCTGCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATGGGCCGTATCCTTCCTaGCAAGTGGTCAGCCATCAG +
Preference number: 4 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHGPYPS*QVVSHQ
Trigger: CTGATGGCTGACCACTTGCCAGGAAGGATACGGCCC...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 72 bp TTTTGCATATGGCCTCTGGAGTTCGTAAGGCATAGATaGGAGGTGCACTTGCATCAGACTGGTTCTGGAACA +
Preference number: 4 (lower is better)
Translates to: FCIWPLEFVRHR*EVHLHQTGSGT
Trigger: TGTTCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAGAGGCCATATGCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATTCTTCCGTTGGTCATTaGGGCCCAGGAGGATGTTGG +
Preference number: 4 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHSSVGH*GPGGCW
Trigger: CCAACATCCTCCTGGGCCTCAATGACCAACGGAAGA...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp GTTTCAGGGATGAGAAAATTGAGGCATGCAGGACTTTTTGCATATGGATATATAGAGAGATCCCCTTGTTaGAAGGGCACGCTGAGCTCC +
Preference number: 4 (lower is better)
Translates to: VSGMRKLRHAGLFAYGYIERSPC*KGTLSS
Trigger: GGAGCTCAGCGTGCCCTTTCAACAAGGGGATCTCTC...TATATATCCATATGCAAAAAGTCCTGCATGCCTCAATTTTCTCATCCCTGAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp ATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGAGGAAGGTCTGTGATCTaGTCGACAGGAAAAGGAAGT +
Preference number: 4 (lower is better)
Translates to: IAAKTAVVCTKFALGSSRGRSVI*STGKGS
Trigger: ACTTCCTTTTCCTGTCGATCAGATCACAGACCTTCC...TCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp CTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTTGCATCAGACTGGTTCTGGATTAGCTTGTGCATTTTaGTCATCATCTGGAAGTCGT +
Preference number: 4 (lower is better)
Translates to: LEFVRHRLEVHLHQTGSGLACAF*SSSGSR
Trigger: ACGACTTCCAGATGATGATCAAAATGCACAAGCTAA...TCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATGGGAGGTCCTCGTTCTaGGAATGTTCCAGGGTCACT +
Preference number: 4 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHGRSSF*ECSRVT
Trigger: AGTGACCCTGGAACATTCTCAGAACGAGGACCTCCC...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp AGTATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCACGTCTGTCCAACCAGTaGTTGCCAGAAGTATTCACT +
Preference number: 4 (lower is better)
Translates to: SIAAKTAVVCTKFALGSSRLSNQ*LPEVFT
Trigger: AGTGAATACTTCTGGCAAGCACTGGTTGGACAGACG...TGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAATACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCTCCAGCTCTCCCTCCTaGTTACAGAGAGTCTCCGGC +
Preference number: 4 (lower is better)
Translates to: SFKKIGLTQNSVQVAKLTSSSPS*LQRVSG
Trigger: GCCGGAGACTCTCTGTAAGCAGGAGGGAGAGCTGGA...GGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATATCTCCCATCAGGCCTaGTTCCTGATGTTCCGTGGC +
Preference number: 4 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHISHQA*FLMFRG
Trigger: GCCACGGAACATCAGGAACCAGGCCTGATGGGAGAT...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp ATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGAAGGCATAATCTTTCCTaGGCTGTTCGTCCGTTGTAC +
Preference number: 4 (lower is better)
Translates to: IAAKTAVVCTKFALGSSRRHNLS*AVRPLY
Trigger: GTACAACGGACGAACAGCCCAGGAAAGATTATGCCT...TCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTTTGGCACCGGGCAGCTaGTGTTGGGCCGTATCCTTC +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTILAPGS*CWAVSF
Trigger: GAAGGATACGGCCCAACACCAGCTGCCCGGTGCCAA...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 72 bp CAGACTTCCTTTAAGAATTACCAACCCCACGAGGCATaGTGGACTGACTTGCCAGAAATGGAATCTGCAACA +
Preference number: 4 (lower is better)
Translates to: QTSFKNYQPHEA*WTDLPEMESAT
Trigger: TGTTGCAGATTCCATTTCTGGCAAGTCAGTCCACAATGCCTCGTGGGGTTGGTAATTCTTAAAGGAAGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp TCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCCTGACTAAGGGTTGCTaGGATGTACTGGGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: SFKKIGLTQNSVQVAKLTLTKGC*DVLGRP
Trigger: TGGCCTGCCCAGTACATCTCAGCAACCCTTAGTCAG...GGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATATCAGGCCTGGTTCCTaGTGTTCCGTGGCAAGGAAT +
Preference number: 4 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHIRPGS*CSVARN
Trigger: ATTCCTTGCCACGGAACATCAGGAACCAGGCCTGAT...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp ACTTCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGGCCAGAAGTATTCACTaGATGCGGCCAGCACAGCCC +
Preference number: 4 (lower is better)
Translates to: TSFKKIGLTQNSVQVAKLARSIH*MRPAQP
Trigger: GGGCTGTGCTGGCCGCATGCAGTGAATACTTCTGGC...CAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp AGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAATGTCCAACCAGTGCTTaGCAGAAGTATTCACTGCAT +
Preference number: 4 (lower is better)
Translates to: SKTAMLTASKPVLAPDTKCPTSA*QKYSLH
Trigger: ATGCAGTGAATACTTCTGGCAAGCACTGGTTGGACA...TTTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATGAGTGGCGACCCCATTaGGAAGTTGGACACATCCTT +
Preference number: 4 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHEWRPH*EVGHIL
Trigger: AAGGATGTGTCCAACTTCGCAATGGGGTCGCCACTC...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTTTGGTCACACGCGCTTaGGGAGAAGATGACGCTCCG +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTILVTRA*GEDDAP
Trigger: CGGAGCGTCATCTTCTCCGCAAGCGCGTGTGACCAA...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTCTGAGATTGAACCTTACTCATATACATACATaGGGGAGCCAGGCTTCTCAT +
Preference number: 4 (lower is better)
Translates to: FGGTKTKPTKVKGLRLNLTHIHT*GSQASH
Trigger: ATGAGAAGCCTGGCTCCCCCATGTATGTATATGAGT...AAGGTTCAATCTCAGACCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp ATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGATGGCACAGTGGACTGTaGACTCATATACATACATGG +
Preference number: 4 (lower is better)
Translates to: IAAKTAVVCTKFALGSSRWHSGL*THIHTW
Trigger: CCATGTATGTATATGAGTCCACAGTCCACTGTGCCA...TCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTTTCAGGGATGAGAAAATTGAGGCATGCAGGACTTTTTGCATATGGATATATAAAAGCTGATGGGGTCTaGGAGCATCTGGTCTGTGGC +
Preference number: 4 (lower is better)
Translates to: VSGMRKLRHAGLFAYGYIKADGV*EHLVCG
Trigger: GCCACAGACCAGATGCTCCCAGACCCCATCAGCTTT...TATATATCCATATGCAAAAAGTCCTGCATGCCTCAATTTTCTCATCCCTGAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTCTGAGATTGAACCTTTTTCTGAGTTTTCCTTaGTGTCTGTGGGTACCTCAG +
Preference number: 4 (lower is better)
Translates to: FGGTKTKPTKVKGLRLNLFLSFP*CLWVPQ
Trigger: CTGAGGTACCCACAGACACCAAGGAAAACTCAGAAA...AAGGTTCAATCTCAGACCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AAGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAATTTCTGAGTTTTCCTTaGTGTCTGTGGGTACCTCAG +
Preference number: 4 (lower is better)
Translates to: KQNSHVNSFQTSSGTRHKFLSFP*CLWVPQ
Trigger: CTGAGGTACCCACAGACACCAAGGAAAACTCAGAAA...TTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATGTTCCTGATGTTCCGTaGCAAGGAATCTGGCTCCCT +
Preference number: 4 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHVPDVP*QGIWLP
Trigger: AGGGAGCCAGATTCCTTGCCACGGAACATCAGGAAC...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp ATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGATGCTCACATTTAATCTaGGGTCGGACTTGGTTGTAC +
Preference number: 4 (lower is better)
Translates to: IAAKTAVVCTKFALGSSRCSHLI*GRTWLY
Trigger: GTACAACCAAGTCCGACCCCAGATTAAATGTGAGCA...TCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 72 bp ATGCCTGAGTCACTGTTGGGGAACCTGGAAGAGAAGTaGCAGGATGGTCTAGTAACTTTGCTAACTTTAGAA +
Preference number: 4 (lower is better)
Translates to: MPESLLGNLEEK*QDGLVTLLTLE
Trigger: TTCTAAAGTTAGCAAAGTTACTAGACCATCCTGCAACTTCTCTTCCAGGTTCCCCAACAGTGACTCAGGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 72 bp AAGAATTACCAACCCCACGAGGCATTGTGGACTGACTaGCCAGAAATGGAATCTGCAACAAAATCCTCAAGT +
Preference number: 4 (lower is better)
Translates to: KNYQPHEALWTD*PEMESATKSSS
Trigger: ACTTGAGGATTTTGTTGCAGATTCCATTTCTGGCAAGTCAGTCCACAATGCCTCGTGGGGTTGGTAATTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTATGTTCCAGGGTCACTaGCTTCCAACCTCCTCCCAG +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTIMFQGH*LPTSSQ
Trigger: CTGGGAGGAGGTTGGAAGGCAGTGACCCTGGAACAT...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTCTGAGATTGAACCTTGGTCTTTGTCCAAATTaGTCACCGCAGAGTATGAAT +
Preference number: 4 (lower is better)
Translates to: FGGTKTKPTKVKGLRLNLGLCPN*SPQSMN
Trigger: ATTCATACTCTGCGGTGAGCAATTTGGACAAAGACC...AAGGTTCAATCTCAGACCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTTTCAGGGATGAGAAAATTGAGGCATGCAGGACTTTTTGCATATGGATATATAATGTCCTTCTTCCGTTaGTCATTGAGGCCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: VSGMRKLRHAGLFAYGYIMSFFR*SLRPRR
Trigger: CCTCCTGGGCCTCAATGACCAACGGAAGAAGGACAT...TATATATCCATATGCAAAAAGTCCTGCATGCCTCAATTTTCTCATCCCTGAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTAAAGCTGATGGGGTCTaGGAGCATCTGGTCTGTGGC +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTIKADGV*EHLVCG
Trigger: GCCACAGACCAGATGCTCCCAGACCCCATCAGCTTT...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTGTTGCTGAGATGTACTaGGCAGGCCAGTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTIVAEMY*AGQWTP
Trigger: TGGAGTCCACTGGCCTGCCCAGTACATCTCAGCAAC...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTGGAAGTTTAACCTCCTaGCCCCTGTCCTGCACAGGA +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTIGSLTS*PLSCTG
Trigger: TCCTGTGCAGGACAGGGGCCAGGAGGTTAAACTTCC...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp ATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGAATTTTGATCATCATCTaGAAGTCGTTCCTGGGAAGG +
Preference number: 4 (lower is better)
Translates to: IAAKTAVVCTKFALGSSRILIII*KSFLGR
Trigger: CCTTCCCAGGAACGACTTCCAGATGATGATCAAAAT...TCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTTTCAGGGATGAGAAAATTGAGGCATGCAGGACTTTTTGCATATGGATATATATCTCGACAGACCTCCTaGGAGAGGCAGGAAAAGTTG +
Preference number: 4 (lower is better)
Translates to: VSGMRKLRHAGLFAYGYISRQTS*ERQEKL
Trigger: CAACTTTTCCTGCCTCTCCCAGGAGGTCTGTCGAGA...TATATATCCATATGCAAAAAGTCCTGCATGCCTCAATTTTCTCATCCCTGAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp ACTTCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGGGCCTGGATCTGCTCTaGACTCTGGATGTCTCGACA +
Preference number: 4 (lower is better)
Translates to: TSFKKIGLTQNSVQVAKLGLDLL*TLDVST
Trigger: TGTCGAGACATCCAGAGTCCAGAGCAGATCCAGGCC...CAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AGTATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCATTAGCTTGTGCATTTTaGTCATCATCTGGAAGTCGT +
Preference number: 4 (lower is better)
Translates to: SIAAKTAVVCTKFALGSSLACAF*SSSGSR
Trigger: ACGACTTCCAGATGATGATCAAAATGCACAAGCTAA...TGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAATACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATACGCACTGTCCTTTCTaGAAACAAACAGGCCATCCT +
Preference number: 4 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHTHCPF*KQTGHP
Trigger: AGGATGGCCTGTTTGTTTGCAGAAAGGACAGTGCGT...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp AGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAATCTGAGGTTAGCTTGTaGATTTTGATCATCATCTGG +
Preference number: 4 (lower is better)
Translates to: SKTAMLTASKPVLAPDTKSEVSL*ILIIIW
Trigger: CCAGATGATGATCAAAATGCACAAGCTAACCTCAGA...TTTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTTTCAGGGATGAGAAAATTGAGGCATGCAGGACTTTTTGCATATGGATATATATTTCCTTGGTGTCTGTaGGTACCTCAGACTCAGGGA +
Preference number: 4 (lower is better)
Translates to: VSGMRKLRHAGLFAYGYIFPWCL*VPQTQG
Trigger: TCCCTGAGTCTGAGGTACCCACAGACACCAAGGAAA...TATATATCCATATGCAAAAAGTCCTGCATGCCTCAATTTTCTCATCCCTGAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp ATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGATTATATCTAGGGTACTaGGTCAATGCACCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: IAAKTAVVCTKFALGSSRLYLGY*VNAPFS
Trigger: AGAAAAGGGTGCATTGACCCAGTACCCTAGATATAA...TCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp ACTTCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGTACTGGGCAGGCCAGTaGACTCCACACCTTTCGTTA +
Preference number: 4 (lower is better)
Translates to: TSFKKIGLTQNSVQVAKLYWAGQ*TPHLSL
Trigger: TAACGAAAGGTGTGGAGTCCACTGGCCTGCCCAGTA...CAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp ACTTCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCCCATTGCGAAGTTaGACACATCCTTCTGGCCCA +
Preference number: 4 (lower is better)
Translates to: TSFKKIGLTQNSVQVAKLTPLRS*THPSGP
Trigger: TGGGCCAGAAGGATGTGTCCAACTTCGCAATGGGGT...CAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTTCTCGACAGACCTCCTaGGAGAGGCAGGAAAAGTTG +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTISRQTS*ERQEKL
Trigger: CAACTTTTCCTGCCTCTCCCAGGAGGTCTGTCGAGA...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCACGCACTGTCCTTTCTaGAAACAAACAGGCCATCCT +
Preference number: 4 (lower is better)
Translates to: SFKKIGLTQNSVQVAKLTTHCPF*KQTGHP
Trigger: AGGATGGCCTGTTTGTTTGCAGAAAGGACAGTGCGT...GGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATACTCATATACATACATaGGGGAGCCAGGCTTCTCAT +
Preference number: 4 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHTHIHT*GSQASH
Trigger: ATGAGAAGCCTGGCTCCCCCATGTATGTATATGAGT...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTTTCAGGGATGAGAAAATTGAGGCATGCAGGACTTTTTGCATATGGATATATACACTGTAGACATTCTTaGTACACGCGAGCTGGTACT +
Preference number: 4 (lower is better)
Translates to: VSGMRKLRHAGLFAYGYIHCRHS*YTRAGT
Trigger: AGTACCAGCTCGCGTGTACCAAGAATGTCTACAGTG...TATATATCCATATGCAAAAAGTCCTGCATGCCTCAATTTTCTCATCCCTGAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTGGTCTCCTCACTGGGTaGCTCACTTTTAATCTGTCC +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTIGLLTG*LTFNLS
Trigger: GGACAGATTAAAAGTGAGCCACCCAGTGAGGAGACC...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCAGGCATAATCTTTCCTaGGCTGTTCGTCCGTTGTAC +
Preference number: 4 (lower is better)
Translates to: SFKKIGLTQNSVQVAKLTRHNLS*AVRPLY
Trigger: GTACAACGGACGAACAGCCCAGGAAAGATTATGCCT...GGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp GTTTCAGGGATGAGAAAATTGAGGCATGCAGGACTTTTTGCATATGGATATATACAATGCACCCTTTTCTaGGTTTTCCTTGGTGTCTGT +
Preference number: 4 (lower is better)
Translates to: VSGMRKLRHAGLFAYGYIQCTLF*VFLGVC
Trigger: ACAGACACCAAGGAAAACTCAGAAAAGGGTGCATTG...TATATATCCATATGCAAAAAGTCCTGCATGCCTCAATTTTCTCATCCCTGAAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp TCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCTCACATTCCAAGTTCTaGATACAGTCCAGCTTCCTC +
Preference number: 4 (lower is better)
Translates to: SFKKIGLTQNSVQVAKLTSHSKF*IQSSFL
Trigger: GAGGAAGCTGGACTGTATTCAGAACTTGGAATGTGA...GGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp GTTTCAGGGATGAGAAAATTGAGGCATGCAGGACTTTTTGCATATGGATATATATCACATTCCAAGTTCTaGATACAGTCCAGCTTCCTC +
Preference number: 4 (lower is better)
Translates to: VSGMRKLRHAGLFAYGYISHSKF*IQSSFL
Trigger: GAGGAAGCTGGACTGTATTCAGAACTTGGAATGTGA...TATATATCCATATGCAAAAAGTCCTGCATGCCTCAATTTTCTCATCCCTGAAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTTTCTTTCTCTGCTACTaGGATGGCAGTGGCCTCAAA +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTIFFLCY*DGSGLK
Trigger: TTTGAGGCCACTGCCATCCCAGTAGCAGAGAAAGAA...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTACTCGTCACTGGAATTaGTTCCGTAAGACTGCTCAC +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTITRHWN*FRKTAH
Trigger: GTGAGCAGTCTTACGGAACCAATTCCAGTGACGAGT...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp ACTTCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACTCGTCACTGGAATTaGTTCCGTAAGACTGCTCAC +
Preference number: 4 (lower is better)
Translates to: TSFKKIGLTQNSVQVAKLTRHWN*FRKTAH
Trigger: GTGAGCAGTCTTACGGAACCAATTCCAGTGACGAGT...CAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTAGGCATAATCTTTCCTaGGCTGTTCGTCCGTTGTAC +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTIRHNLS*AVRPLY
Trigger: GTACAACGGACGAACAGCCCAGGAAAGATTATGCCT...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 72 bp TGGAATGAAAATGACAGCCAAGAGTTTATCCATTGCTaGAGAGAGAAACGCATACACCATGCCACAACATTA +
Preference number: 4 (lower is better)
Translates to: WNENDSQEFIHC*REKRIHHATTL
Trigger: TAATGTTGTGGCATGGTGTATGCGTTTCTCTCTCAAGCAATGGATAAACTCTTGGCTGTCATTTTCATTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTGTTTTAAGGTCACCCTaGGAGATCCCCTTGTTGAAA +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTIVLRSP*EIPLLK
Trigger: TTTCAACAAGGGGATCTCTCAGGGTGACCTTAAAAC...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR TCA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATTTAGCTTGTGCATTTTaGTCATCATCTGGAAGTCGT +
Preference number: 4 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHLACAF*SSSGSR
Trigger: ACGACTTCCAGATGATGATCAAAATGCACAAGCTAA...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp ACTTCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGAGGATGTTGGCACAGTaGACTGTGGACTCATATACA +
Preference number: 4 (lower is better)
Translates to: TSFKKIGLTQNSVQVAKLRMLAQ*TVDSYT
Trigger: TGTATATGAGTCCACAGTCCACTGTGCCAACATCCT...CAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGAAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 72 bp GGAGGAAGTGAGCTACAAAAATATTCAAGCAGATTATaGTCTACACATCCTAGGATGGGTTCATTATTTGGC +
Preference number: 4 (lower is better)
Translates to: GGSELQKYSSRL*STHPRMGSLFG
Trigger: GCCAAATAATGAACCCATCCTAGGATGTGTAGACAATAATCTGCTTGAATATTTTTGTAGCTCACTTCCTCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp GTTTCAGGGATGAGAAAATTGAGGCATGCAGGACTTTTTGCATATGGATATATATTATATCTAGGGTACTaGGTCAATGCACCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: VSGMRKLRHAGLFAYGYILYLGY*VNAPFS
Trigger: AGAAAAGGGTGCATTGACCCAGTACCCTAGATATAA...TATATATCCATATGCAAAAAGTCCTGCATGCCTCAATTTTCTCATCCCTGAAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTATTTTGATCATCATCTaGAAGTCGTTCCTGGGAAGG +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTIILIII*KSFLGR
Trigger: CCTTCCCAGGAACGACTTCCAGATGATGATCAAAAT...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
3UTR CAA 72 bp TCCAAAATTATAGTGCATGTTAGAAAGCAGCATGCCTaGAGAAAGACAGTAAATAAATTACTCGGAGGACAG +
Preference number: 4 (lower is better)
Translates to: SKIIVHVRKQHA*RKTVNKLLGGQ
Trigger: CTGTCCTCCGAGTAATTTATTTACTGTCTTTCTCAAGGCATGCTGCTTTCTAACATGCACTATAATTTTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR GCA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTTCTGAGGTTAGCTTGTaGATTTTGATCATCATCTGG +
Preference number: 4 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTISEVSL*ILIIIW
Trigger: CCAGATGATGATCAAAATGCACAAGCTAACCTCAGA...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 90 bp GCGCTTGCGGAGAAGATGACGCTCCGGCGGTCCAGCTCTCCCTCCTaGTTACAGAGAGTCTCCGGCCCGGGCCCCCTGAGTGGCGACCCC +
Preference number: 5 (lower is better)
Translates to: ALAEKMTLRRSSSPS*LQRVSGPGPLSGDP
Trigger: GGGGTCGCCACTCAGGGGGCCCGGGCCGGAGACTCTCTGTAAGCAGGAGGGAGAGCTGGACCGCCGGAGCGTCATCTTCTCCGCAAGCGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp CTCTCCCTCCTGCTTACAGAGAGTCTCCGGCCCGGGCCCCCTGAGTaGCGACCCCATTGCGAAGTTGGACACATCCTTCTGGCCCACGTG +
Preference number: 5 (lower is better)
Translates to: LSLLLTESLRPGPPE*RPHCEVGHILLAHV
Trigger: CACGTGGGCCAGAAGGATGTGTCCAACTTCGCAATGGGGTCGCCACTCAGGGGGCCCGGGCCGGAGACTCTCTGTAAGCAGGAGGGAGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 90 bp AGGGCGAAGAGGAGAACTTACAGAGAGTCTCCGGCCCGGGCCCCCTaGGTGGCGACCCCATTGCGAAGTTGGACACATCCTTCTGGCCCA +
Preference number: 5 (lower is better)
Translates to: RAKRRTYRESPARAP*VATPLRSWTHPSGP
Trigger: TGGGCCAGAAGGATGTGTCCAACTTCGCAATGGGGTCGCCACTCAGGGGGCCCGGGCCGGAGACTCTCTGTAAGTTCTCCTCTTCGCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037416.13
CDS CCA 90 bp CGAAGAGGAGAACTTACAGAGAGTCTCCGGCCCGGGCCCCCTGAGTaGCGACCCCATTGCGAAGTTGGACACATCCTTCTGGCCCACGTG +
Preference number: 5 (lower is better)
Translates to: RRGELTESLRPGPPE*RPHCEVGHILLAHV
Trigger: CACGTGGGCCAGAAGGATGTGTCCAACTTCGCAATGGGGTCGCCACTCAGGGGGCCCGGGCCGGAGACTCTCTGTAAGTTCTCCTCTTCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037416.13
CDS GCA 90 bp CTCCAGGCAGCAGGGTACACTTCCTCCTACTGCACACGGGGAGGGTaGAAGGCTCTGCTCAACACCCACAGGAGGAGGGTTAACACTGGC +
Preference number: 5 (lower is better)
Translates to: LQAAGYTSSYCTRGG*KALLNTHRRRVNTG
Trigger: GCCAGTGTTAACCCTCCTCCTGTGGGTGTTGAGCAGAGCCTTGCACCCTCCCCGTGTGCAGTAGGAGGAAGTGTACCCTGCTGCCTGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp AGGGCCTGGATCTGCTCTGGACTCTGGATGTCTCGACAGACCTCCTaGGAGAGGCAGGAAAAGTTGTCCAGGAGCTCTCCCATGCACGCC +
Preference number: 5 (lower is better)
Translates to: RAWICSGLWMSRQTS*ERQEKLSRSSPMHA
Trigger: GGCGTGCATGGGAGAGCTCCTGGACAACTTTTCCTGCCTCTCCCAGGAGGTCTGTCGAGACATCCAGAGTCCAGAGCAGATCCAGGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp GGGTATGAGGACAGGGCAGTAGCGGTGCAGGGCCTGGATCTGCTCTaGACTCTGGATGTCTCGACAGACCTCCTGGGAGAGGCAGGAAAA +
Preference number: 5 (lower is better)
Translates to: GYEDRAVAVQGLDLL*TLDVSTDLLGEAGK
Trigger: TTTTCCTGCCTCTCCCAGGAGGTCTGTCGAGACATCCAGAGTCCAGAGCAGATCCAGGCCCTGCACCGCTACTGCCCTGTCCTCATACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 90 bp AATGCACTGGAGTGTTCGGTTGGTCACACGCGCTTGCGGAGAAGATaGCGCTCCGGCGGTCCAGCTCTCCCTCCTGCTTACAGAGAGTCT +
Preference number: 5 (lower is better)
Translates to: NALECSVGHTRLRRR*RSGGPALPPAYRES
Trigger: AGACTCTCTGTAAGCAGGAGGGAGAGCTGGACCGCCGGAGCGTCATCTTCTCCGCAAGCGCGTGTGACCAACCGAACACTCCAGTGCATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TCTCCTCACCAGTGCCTGTGGCGTTCTAACACACCACCGCAGGCTCCCGCTCTTCCACCCATAGACTTTTaGGCACCGGCTCCGAAAGGT +
Preference number: 5 (lower is better)
Translates to: SPHQCLWRSNTPPQAPALPPIDF*APAPKG
Trigger: ACCTTTCGGAGCCGGTGCCAAAAAGTCTATGGGTGG...AAGAGCGGGAGCCTGCGGTGGTGTGTTAGAACGCCACAGGCACTGGTGAGGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 90 bp GTCTGTGGGTACCTCAGACTCAGGGAGCAGGGCTTCTTCTTTCTCTaGTACTGGGATGGCAGTGGCCTCAAAGCTGATGGGGTCTGGGAG +
Preference number: 5 (lower is better)
Translates to: VCGYLRLREQGFFFL*YWDGSGLKADGVWE
Trigger: CTCCCAGACCCCATCAGCTTTGAGGCCACTGCCATCCCAGTAGCAGAGAAAGAAGAAGCCCTGCTCCCTGAGTCTGAGGTACCCACAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp GGGTACCTCAGACTCAGGGAGCAGGGCTTCTTCTTTCTCTGCTACTaGGATGGCAGTGGCCTCAAAGCTGATGGGGTCTGGGAGCATCTG +
Preference number: 5 (lower is better)
Translates to: GYLRLREQGFFFLCY*DGSGLKADGVWEHL
Trigger: CAGATGCTCCCAGACCCCATCAGCTTTGAGGCCACTGCCATCCCAGTAGCAGAGAAAGAAGAAGCCCTGCTCCCTGAGTCTGAGGTACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp GGTAGGGGCAGGGCTGGGTTGTTTTCGGTCCATCTCGACATCTCCTaGTCTGTCTTTGATGTCGGTCTCATCTCCGGACAGGCAGAGGGT +
Preference number: 5 (lower is better)
Translates to: GRGRAGLFSVHLDIS*SVFDVGLISGQAEG
Trigger: ACCCTCTGCCTGTCCGGAGATGAGACCGACATCAAAGACAGACCAGGAGATGTCGAGATGGACCGAAAACAACCCAGCCCTGCCCCTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp CATCTCCCATCAGGCCTGGTTCCTGATGTTCCGTGGCAAGGAATCTaGCTCCCTGGGAACAGGGCGAAGAGGAGAACTCACAGAGAGGGA +
Preference number: 5 (lower is better)
Translates to: HLPSGLVPDVPWQGI*LPGNRAKRRTHREG
Trigger: TCCCTCTCTGTGAGTTCTCCTCTTCGCCCTGTTCCCAGGGAGCCAGATTCCTTGCCACGGAACATCAGGAACCAGGCCTGATGGGAGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 90 bp GGTCGGACTTGGTTGTACATTCCATCTCCCATCAGGCCTGGTTCCTaGTGTTCCGTGGCAAGGAATCTGGCTCCCTGGGAACAGGGCGAA +
Preference number: 5 (lower is better)
Translates to: GRTWLYIPSPIRPGS*CSVARNLAPWEQGE
Trigger: TTCGCCCTGTTCCCAGGGAGCCAGATTCCTTGCCACGGAACATCAGGAACCAGGCCTGATGGGAGATGGAATGTACAACCAAGTCCGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp ACTGGGATGGCAGTGGCCTCAAAGCTGATGGGGTCTGGGAGCATCTaGTCTGTGGCGCAAGCCATCCTAGCTGTCTCTGAGTCCATTGTT +
Preference number: 5 (lower is better)
Translates to: TGMAVASKLMGSGSI*SVAQAILAVSESIV
Trigger: AACAATGGACTCAGAGACAGCTAGGATGGCTTGCGCCACAGACCAGATGCTCCCAGACCCCATCAGCTTTGAGGCCACTGCCATCCCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 90 bp TTTCTGCAAACAAACAGGCCATCCTCCCTGTTCAGGAGCTGGGTCTaGAGGAAGCTGAAGCAGGAGTCCTCCAGATTGTGCATGCGCAGG +
Preference number: 5 (lower is better)
Translates to: FLQTNRPSSLFRSWV*RKLKQESSRLCMRR
Trigger: CCTGCGCATGCACAATCTGGAGGACTCCTGCTTCAGCTTCCTGCAGACCCAGCTCCTGAACAGGGAGGATGGCCTGTTTGTTTGCAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp CTCTCCACGATCAGCGTCACGTCACAGAGAATGTCCTTCTTCCGTTaGTCATTGAGGCCCAGGAGGATGTTGGCACAGTGGACTGTGGAC +
Preference number: 5 (lower is better)
Translates to: LSTISVTSQRMSFFR*SLRPRRMLAQWTVD
Trigger: GTCCACAGTCCACTGTGCCAACATCCTCCTGGGCCTCAATGACCAACGGAAGAAGGACATTCTCTGTGACGTGACGCTGATCGTGGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp CATCTCCCATCAGGCCTGGTTCCTGATGTTCCGTGGCAAGGAATCTaGCTCCCTGGGAACAGGGCGAAGAGGAGAACTTACAGAGAGTCT +
Preference number: 5 (lower is better)
Translates to: HLPSGLVPDVPWQGI*LPGNRAKRRTYRES
Trigger: AGACTCTCTGTAAGTTCTCCTCTTCGCCCTGTTCCCAGGGAGCCAGATTCCTTGCCACGGAACATCAGGAACCAGGCCTGATGGGAGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037416.13
CDS CCA 90 bp GGTTGTACATTCCATCTCCCATCAGGCCTGGTTCCTGATGTTCCGTaGCAAGGAATCTGGCTCCCTGGGAACAGGGCGAAGAGGAGAACT +
Preference number: 5 (lower is better)
Translates to: GCTFHLPSGLVPDVP*QGIWLPGNRAKRRT
Trigger: AGTTCTCCTCTTCGCCCTGTTCCCAGGGAGCCAGATTCCTTGCCACGGAACATCAGGAACCAGGCCTGATGGGAGATGGAATGTACAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp TCTCAGTCATTTCCTGGCAGAAGTCCACCGTCACAGACTGGCTCCTaGCTTCTAGGGGAGGTCCTCGTTCTGAGAATGTTCCAGGGTCAC +
Preference number: 5 (lower is better)
Translates to: SQSFPGRSPPSQTGS*LLGEVLVLRMFQGH
Trigger: GTGACCCTGGAACATTCTCAGAACGAGGACCTCCCCTAGAAGCCAGGAGCCAGTCTGTGACGGTGGACTTCTGCCAGGAAATGACTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GTCGACACTGTTGTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAAGGGGCAGGGCTGGGTaGTTTTCGGTCCATCTCGAC +
Preference number: 5 (lower is better)
Translates to: VDTVVFLARARGSTIMKVRGRAG*FSVHLD
Trigger: GTCGAGATGGACCGAAAACAACCCAGCCCTGCCCCT...TACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGTCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGAGGGGCAGGGCTGGGTaGTTTTCGGTCCATCTCGAC +
Preference number: 5 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRRGRAG*FSVHLD
Trigger: GTCGAGATGGACCGAAAACAACCCAGCCCTGCCCCT...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GCCCTACCACATGGCATTTCTGAGCGCTGTCTAAGCAGAGGCCAGAAAGAAATGCAATTCTCAGAGGTGTaGCTGGGCACCCAGGGGAGC +
Preference number: 5 (lower is better)
Translates to: ALPHGISERCLSRGQKEMQFSEV*LGTQGS
Trigger: GCTCCCCTGGGTGCCCAGCAACACCTCTGAGAATTG...CATTTCTTTCTGGCCTCTGCTTAGACAGCGCTCAGAAATGCCATGTGGTAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGACACACCGGGCAGCTGGTGTaGGGCCGTATCCTTCCTGGC +
Preference number: 5 (lower is better)
Translates to: AAKTAVVCTKFALGSSRHTGQLV*GRILPG
Trigger: GCCAGGAAGGATACGGCCCAACACCAGCTGCCCGGT...GTGTCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GCCCTACCACATGGCATTTCTGAGCGCTGTCTAAGCAGAGGCCAGAAAGAAATGGAGCGAGGACAGACTTaGATTGGCACCGGGCAGCTG +
Preference number: 5 (lower is better)
Translates to: ALPHGISERCLSRGQKEMERGQT*IGTGQL
Trigger: CAGCTGCCCGGTGCCAATCAAAGTCTGTCCTCGCTC...CATTTCTTTCTGGCCTCTGCTTAGACAGCGCTCAGAAATGCCATGTGGTAGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 90 bp GCCCCTGTCCTGCACAGGACACGACTCACTGTCTGCTTCCGAGAATaGTCCAGACTCGTCACTGGAATTGGTTCCGTAAGACTGCTCACA +
Preference number: 5 (lower is better)
Translates to: APVLHRTRLTVCFRE*SRLVTGIGSVRLLT
Trigger: TGTGAGCAGTCTTACGGAACCAATTCCAGTGACGAGTCTGGATCATTCTCGGAAGCAGACAGTGAGTCGTGTCCTGTGCAGGACAGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 90 bp CACCGGCTCCGAAAGGTCTTTGTCCAAATTGCTCACCGCAGAGTATaGATGCACTGGAGTGTTCGGTTGGTCACACGCGCTTGCGGAGAA +
Preference number: 5 (lower is better)
Translates to: HRLRKVFVQIAHRRV*MHWSVRLVTRACGE
Trigger: TTCTCCGCAAGCGCGTGTGACCAACCGAACACTCCAGTGCATTCATACTCTGCGGTGAGCAATTTGGACAAAGACCTTTCGGAGCCGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp AATCTGGGGTCGGACTTGGTTGTACATTCCATCTCCCATCAGGCCTaGTTCCTGATGTTCCGTGGCAAGGAATCTGGCTCCCTGGGAACA +
Preference number: 5 (lower is better)
Translates to: NLGSDLVVHSISHQA*FLMFRGKESGSLGT
Trigger: TGTTCCCAGGGAGCCAGATTCCTTGCCACGGAACATCAGGAACCAGGCCTGATGGGAGATGGAATGTACAACCAAGTCCGACCCCAGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp TCTTTCCTGGGCTGTTCGTCCGTTGTACACTTCTCAGTCATTTCCTaGCAGAAGTCCACCGTCACAGACTGGCTCCTGGCTTCTAGGGGA +
Preference number: 5 (lower is better)
Translates to: SFLGCSSVVHFSVIS*QKSTVTDWLLASRG
Trigger: TCCCCTAGAAGCCAGGAGCCAGTCTGTGACGGTGGACTTCTGCCAGGAAATGACTGAGAAGTGTACAACGGACGAACAGCCCAGGAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp CTGGAGTTCGTAAGGCATAGATTGGAGGTGCACTTGCATCAGACTGGTTCTGGAAGGCCCAGGAGGATGTaGGCACAGTGGACTGTGGAC +
Preference number: 5 (lower is better)
Translates to: LEFVRHRLEVHLHQTGSGRPRRM*AQWTVD
Trigger: GTCCACAGTCCACTGTGCCAACATCCTCCTGGGCCT...TCCAGAACCAGTCTGATGCAAGTGCACCTCCAATCTATGCCTTACGAACTCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TTCTTCAAGACACAGATGAACAGCGCCACTGGCTGGCAGAAGAACACCCAGATGGACCCCATTGCGAAGTaGGACACATCCTTCTGGCCC +
Preference number: 5 (lower is better)
Translates to: FFKTQMNSATGWQKNTQMDPIAK*DTSFWP
Trigger: GGGCCAGAAGGATGTGTCCAACTTCGCAATGGGGTC...CATCTGGGTGTTCTTCTGCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp AGTGTGAATGGGCATCCCAGCGTTGCCACAGCCAAAATACACTGTTATGACCCGGACCCCATTGCGAAGTaGGACACATCCTTCTGGCCC +
Preference number: 5 (lower is better)
Translates to: SVNGHPSVATAKIHCYDPDPIAK*DTSFWP
Trigger: GGGCCAGAAGGATGTGTCCAACTTCGCAATGGGGTC...CGGGTCATAACAGTGTATTTTGGCTGTGGCAACGCTGGGATGCCCATTCACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 90 bp ATCCCCTTGTTGAAAGGGCACGCTGAGCTCCTGACTAAGGGTTGCTaGGATGTACTGGGCAGGCCAGTGGACTCCACACCTTTCGTTATA +
Preference number: 5 (lower is better)
Translates to: IPLLKGHAELLTKGC*DVLGRPVDSTPFVI
Trigger: TATAACGAAAGGTGTGGAGTCCACTGGCCTGCCCAGTACATCTCAGCAACCCTTAGTCAGGAGCTCAGCGTGCCCTTTCAACAAGGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 90 bp GGCTCCGAAAGGTCTTTGTCCAAATTGCTCACCGCAGAGTATGAATaGACTGGAGTGTTCGGTTGGTCACACGCGCTTGCGGAGAAGATG +
Preference number: 5 (lower is better)
Translates to: GSERSLSKLLTAEYE*TGVFGWSHALAEKM
Trigger: CATCTTCTCCGCAAGCGCGTGTGACCAACCGAACACTCCAGTGCATTCATACTCTGCGGTGAGCAATTTGGACAAAGACCTTTCGGAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp TCCTTCTTCCGTTGGTCATTGAGGCCCAGGAGGATGTTGGCACAGTaGACTGTGGACTCATATACATACATGGGGGAGCCAGGCTTCTCA +
Preference number: 5 (lower is better)
Translates to: SFFRWSLRPRRMLAQ*TVDSYTYMGEPGFS
Trigger: TGAGAAGCCTGGCTCCCCCATGTATGTATATGAGTCCACAGTCCACTGTGCCAACATCCTCCTGGGCCTCAATGACCAACGGAAGAAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp GTACACTTCTCAGTCATTTCCTGGCAGAAGTCCACCGTCACAGACTaGCTCCTGGCTTCTAGGGGAGGTCCTCGTTCTGAGAATGTTCCA +
Preference number: 5 (lower is better)
Translates to: VHFSVISWQKSTVTD*LLASRGGPRSENVP
Trigger: TGGAACATTCTCAGAACGAGGACCTCCCCTAGAAGCCAGGAGCCAGTCTGTGACGGTGGACTTCTGCCAGGAAATGACTGAGAAGTGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TGCTCACCTGACACCGTTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGCAGGAGTCCTCCAGATaGTGCATGCGCAGGAACTCA +
Preference number: 5 (lower is better)
Translates to: CSPDTVRRHQNQTNESKRQESSR*CMRRNS
Trigger: TGAGTTCCTGCGCATGCACAATCTGGAGGACTCCTG...CCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAACGGTGTCAGGTGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGACACCAATTCTCAGAGGTGTaGCTGGGCACCCAGGGGAGC +
Preference number: 5 (lower is better)
Translates to: AAKTAVVCTKFALGSSRHQFSEV*LGTQGS
Trigger: GCTCCCCTGGGTGCCCAGCAACACCTCTGAGAATTG...GTGTCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp AAGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAACCGGGCAGCTGGTGTaGGGCCGTATCCTTCCTGGC +
Preference number: 5 (lower is better)
Translates to: KQNSHVNSFQTSSGTRHKTGQLV*GRILPG
Trigger: GCCAGGAAGGATACGGCCCAACACCAGCTGCCCGGT...TTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGACACGAGCGAGGACAGACTTaGATTGGCACCGGGCAGCTG +
Preference number: 5 (lower is better)
Translates to: AAKTAVVCTKFALGSSRHERGQT*IGTGQL
Trigger: CAGCTGCCCGGTGCCAATCAAAGTCTGTCCTCGCTC...GTGTCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 90 bp CGATCAGCGTCACGTCACAGAGAATGTCCTTCTTCCGTTGGTCATTaGGGCCCAGGAGGATGTTGGCACAGTGGACTGTGGACTCATATA +
Preference number: 5 (lower is better)
Translates to: RSASRHRECPSSVGH*GPGGCWHSGLWTHI
Trigger: TATATGAGTCCACAGTCCACTGTGCCAACATCCTCCTGGGCCTCAATGACCAACGGAAGAAGGACATTCTCTGTGACGTGACGCTGATCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 90 bp AGGCAGGAAAAGTTGTCCAGGAGCTCTCCCATGCACGCCTTCAGGTaGTTCCTCTCCGACAACAGTTTTTCCTTCTCGCACACCAGTTTC +
Preference number: 5 (lower is better)
Translates to: RQEKLSRSSPMHAFR*FLSDNSFSFSHTSF
Trigger: GAAACTGGTGTGCGAGAAGGAAAAACTGTTGTCGGAGAGGAATCACCTGAAGGCGTGCATGGGAGAGCTCCTGGACAACTTTTCCTGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GTCGACACTGTTGTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTATTCTTCCGTTGGTCATaGAGGCCCAGGAGGATGTTG +
Preference number: 5 (lower is better)
Translates to: VDTVVFLARARGSTIMKVFFRWS*RPRRML
Trigger: CAACATCCTCCTGGGCCTCAATGACCAACGGAAGAA...TACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGTCGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp ATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGAATTCCCATGGTCCTCTaGGGGGCGCTGGCACGCACT +
Preference number: 5 (lower is better)
Translates to: IAAKTAVVCTKFALGSSRIPMVL*GALART
Trigger: AGTGCGTGCCAGCGCCCCCAAGAGGACCATGGGAAT...TCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp AGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAAAATTCCCATGGTCCTCTaGGGGGCGCTGGCACGCACT +
Preference number: 5 (lower is better)
Translates to: SKTAMLTASKPVLAPDTKIPMVL*GALART
Trigger: AGTGCGTGCCAGCGCCCCCAAGAGGACCATGGGAAT...TTTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TTCTTCAAGACACAGATGAACAGCGCCACTGGCTGGCAGAAGAACACCCAGATGTCTCCTGGTCTGTCTTaGATGTCGGTCTCATCTCCG +
Preference number: 5 (lower is better)
Translates to: FFKTQMNSATGWQKNTQMSPGLS*MSVSSP
Trigger: CGGAGATGAGACCGACATCAAAGACAGACCAGGAGA...CATCTGGGTGTTCTTCTGCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TTCTTCAAGACACAGATGAACAGCGCCACTGGCTGGCAGAAGAACACCCAGATGTGGGGTCGGACTTGGTaGTACATTCCATCTCCCATC +
Preference number: 5 (lower is better)
Translates to: FFKTQMNSATGWQKNTQMWGRTW*YIPSPI
Trigger: GATGGGAGATGGAATGTACAACCAAGTCCGACCCCA...CATCTGGGTGTTCTTCTGCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAACTAGCACTCCTTGGGGTCGGACTTGGTaGTACATTCCATCTCCCATC +
Preference number: 5 (lower is better)
Translates to: VFLARARGSTIMKVTSTPWGRTW*YIPSPI
Trigger: GATGGGAGATGGAATGTACAACCAAGTCCGACCCCA...AGGAGTGCTAGTTACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 90 bp CCCATAGACTTTTTGGCACCGGCTCCGAAAGGTCTTTGTCCAAATTaGTCACCGCAGAGTATGAATGCACTGGAGTGTTCGGTTGGTCAC +
Preference number: 5 (lower is better)
Translates to: PIDFLAPAPKGLCPN*SPQSMNALECSVGH
Trigger: GTGACCAACCGAACACTCCAGTGCATTCATACTCTGCGGTGAGCAATTTGGACAAAGACCTTTCGGAGCCGGTGCCAAAAAGTCTATGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp GGTACTGGGTCAATGCACCCTTTTCTGAGTTTTCCTTGGTGTCTGTaGGTACCTCAGACTCAGGGAGCAGGGCTTCTTCTTTCTCTGCTA +
Preference number: 5 (lower is better)
Translates to: GTGSMHPFLSFPWCL*VPQTQGAGLLLSLL
Trigger: TAGCAGAGAAAGAAGAAGCCCTGCTCCCTGAGTCTGAGGTACCCACAGACACCAAGGAAAACTCAGAAAAGGGTGCATTGACCCAGTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GTCGACACTGTTGTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTACTGTCCAACCAGTGCTaGCCAGAAGTATTCACTGCA +
Preference number: 5 (lower is better)
Translates to: VDTVVFLARARGSTIMKVLSNQC*PEVFTA
Trigger: TGCAGTGAATACTTCTGGCAAGCACTGGTTGGACAG...TACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGACAACAGTGTCGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp AGTATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGGGGCAGGGCTGGGTaGTTTTCGGTCCATCTCGAC +
Preference number: 5 (lower is better)
Translates to: SIAAKTAVVCTKFALGSSRGRAG*FSVHLD
Trigger: GTCGAGATGGACCGAAAACAACCCAGCCCTGCCCCT...TGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAATACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GTCTTCCTTGCCAGGGCAAGGGGTAGCACCATTATGAAGGTAACTAGCACTCCTAATCTGGGGTCGGACTaGGTTGTACATTCCATCTCC +
Preference number: 5 (lower is better)
Translates to: VFLARARGSTIMKVTSTPNLGSD*VVHSIS
Trigger: GGAGATGGAATGTACAACCAAGTCCGACCCCAGATT...AGGAGTGCTAGTTACCTTCATAATGGTGCTACCCCTTGCCCTGGCAAGGAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp AAGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAACAATTCTCAGAGGTGTaGCTGGGCACCCAGGGGAGC +
Preference number: 5 (lower is better)
Translates to: KQNSHVNSFQTSSGTRHKQFSEV*LGTQGS
Trigger: GCTCCCCTGGGTGCCCAGCAACACCTCTGAGAATTG...TTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GAGCATCCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACAATGTCCTTCTTCCGTaGGTCATTGAGGCCCAGGAG +
Preference number: 5 (lower is better)
Translates to: EHPVSALNHLHFSFTWGNNVLLP*VIEAQE
Trigger: CTCCTGGGCCTCAATGACCAACGGAAGAAGGACATT...GTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGGATGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 90 bp CTGGTACTTCTTATATCTAGGGTACTGGGTCAATGCACCCTTTTCTaGGTTTTCCTTGGTGTCTGTGGGTACCTCAGACTCAGGGAGCAG +
Preference number: 5 (lower is better)
Translates to: LVLLISRVLGQCTLF*VFLGVCGYLRLREQ
Trigger: CTGCTCCCTGAGTCTGAGGTACCCACAGACACCAAGGAAAACTCAGAAAAGGGTGCATTGACCCAGTACCCTAGATATAAGAAGTACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 90 bp CTCCGGATGTCGTGGATGAACTCCAACTGTTCTGAGGTTAGCTTGTaGATTTTGATCATCATCTGGAAGTCGTTCCTGGGAAGGTCTGTG +
Preference number: 5 (lower is better)
Translates to: LRMSWMNSNCSEVSL*ILIIIWKSFLGRSV
Trigger: CACAGACCTTCCCAGGAACGACTTCCAGATGATGATCAAAATGCACAAGCTAACCTCAGAACAGTTGGAGTTCATCCACGACATCCGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGACACCTGTCCAACCAGTGCTaGCCAGAAGTATTCACTGCA +
Preference number: 5 (lower is better)
Translates to: AAKTAVVCTKFALGSSRHLSNQC*PEVFTA
Trigger: TGCAGTGAATACTTCTGGCAAGCACTGGTTGGACAG...GTGTCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp ATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGACAGGAGTCCTCCAGATaGTGCATGCGCAGGAACTCA +
Preference number: 5 (lower is better)
Translates to: IAAKTAVVCTKFALGSSRQESSR*CMRRNS
Trigger: TGAGTTCCTGCGCATGCACAATCTGGAGGACTCCTG...TCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TTCGGCGGCACCAAAACCAAACCAACGAAAGTAAAAGGTCTGAGATTGAACCTTCAGGAGTCCTCCAGATaGTGCATGCGCAGGAACTCA +
Preference number: 5 (lower is better)
Translates to: FGGTKTKPTKVKGLRLNLQESSR*CMRRNS
Trigger: TGAGTTCCTGCGCATGCACAATCTGGAGGACTCCTG...AAGGTTCAATCTCAGACCTTTTACTTTCGTTGGTTTGGTTTTGGTGCCGCCGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GCCCTACCACATGGCATTTCTGAGCGCTGTCTAAGCAGAGGCCAGAAAGAAATGTTTTCTGAGTTTTCCTaGGTGTCTGTGGGTACCTCA +
Preference number: 5 (lower is better)
Translates to: ALPHGISERCLSRGQKEMFSEFS*VSVGTS
Trigger: TGAGGTACCCACAGACACCAAGGAAAACTCAGAAAA...CATTTCTTTCTGGCCTCTGCTTAGACAGCGCTCAGAAATGCCATGTGGTAGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATATGGGGAGCCCCGGCTaGAGGCTATTGCCAGGACTG +
Preference number: 5 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHMGSPG*RLLPGL
Trigger: CAGTCCTGGCAATAGCCTCAAGCCGGGGCTCCCCAT...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TTCTTCAAGACACAGATGAACAGCGCCACTGGCTGGCAGAAGAACACCCAGATGAGGTCTTTGTCCAAATaGCTCACCGCAGAGTATGAA +
Preference number: 5 (lower is better)
Translates to: FFKTQMNSATGWQKNTQMRSLSK*LTAEYE
Trigger: TTCATACTCTGCGGTGAGCAATTTGGACAAAGACCT...CATCTGGGTGTTCTTCTGCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATGGGGAGCCCCGGCTaGAGGCTATTGCCAGGACTG +
Preference number: 5 (lower is better)
Translates to: SFKKIGLTQNSVQVAKLTMGSPG*RLLPGL
Trigger: CAGTCCTGGCAATAGCCTCAAGCCGGGGCTCCCCAT...GGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp AGTATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCATCTCCTGGTCTGTCTTaGATGTCGGTCTCATCTCCG +
Preference number: 5 (lower is better)
Translates to: SIAAKTAVVCTKFALGSSSPGLS*MSVSSP
Trigger: CGGAGATGAGACCGACATCAAAGACAGACCAGGAGA...TGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAATACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp ATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGATCTCCTGGTCTGTCTTaGATGTCGGTCTCATCTCCG +
Preference number: 5 (lower is better)
Translates to: IAAKTAVVCTKFALGSSRSPGLS*MSVSSP
Trigger: CGGAGATGAGACCGACATCAAAGACAGACCAGGAGA...TCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp ATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGATGGGGTCGGACTTGGTaGTACATTCCATCTCCCATC +
Preference number: 5 (lower is better)
Translates to: IAAKTAVVCTKFALGSSRWGRTW*YIPSPI
Trigger: GATGGGAGATGGAATGTACAACCAAGTCCGACCCCA...TCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TTCTTCAAGACACAGATGAACAGCGCCACTGGCTGGCAGAAGAACACCCAGATGGTTAGCTTGTGCATTTaGATCATCATCTGGAAGTCG +
Preference number: 5 (lower is better)
Translates to: FFKTQMNSATGWQKNTQMVSLCI*IIIWKS
Trigger: CGACTTCCAGATGATGATCAAAATGCACAAGCTAAC...CATCTGGGTGTTCTTCTGCCAGCCAGTGGCGCTGTTCATCTGTGTCTTGAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GCCCTACCACATGGCATTTCTGAGCGCTGTCTAAGCAGAGGCCAGAAAGAAATGGTTAGCTTGTGCATTTaGATCATCATCTGGAAGTCG +
Preference number: 5 (lower is better)
Translates to: ALPHGISERCLSRGQKEMVSLCI*IIIWKS
Trigger: CGACTTCCAGATGATGATCAAAATGCACAAGCTAAC...CATTTCTTTCTGGCCTCTGCTTAGACAGCGCTCAGAAATGCCATGTGGTAGGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGACACTGGGCTGTTCGTCCGTaGTACACTTCTCAGTCATTT +
Preference number: 5 (lower is better)
Translates to: AAKTAVVCTKFALGSSRHWAVRP*YTSQSF
Trigger: AAATGACTGAGAAGTGTACAACGGACGAACAGCCCA...GTGTCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 90 bp ACATTCTTGGTACACGCGAGCTGGTACTTCTTATATCTAGGGTACTaGGTCAATGCACCCTTTTCTGAGTTTTCCTTGGTGTCTGTGGGT +
Preference number: 5 (lower is better)
Translates to: TFLVHASWYFLYLGY*VNAPFSEFSLVSVG
Trigger: ACCCACAGACACCAAGGAAAACTCAGAAAAGGGTGCATTGACCCAGTACCCTAGATATAAGAAGTACCAGCTCGCGTGTACCAAGAATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCAGGCCCAGGAGGATGTaGGCACAGTGGACTGTGGAC +
Preference number: 5 (lower is better)
Translates to: SFKKIGLTQNSVQVAKLTRPRRM*AQWTVD
Trigger: GTCCACAGTCCACTGTGCCAACATCCTCCTGGGCCT...GGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GAGCATCCAGTGTCAGCTCTGAATCATCTGCACTTCAGCTTTACTTGGGGAAACTTTTCTGAGTTTTCCTaGGTGTCTGTGGGTACCTCA +
Preference number: 5 (lower is better)
Translates to: EHPVSALNHLHFSFTWGNFSEFS*VSVGTS
Trigger: TGAGGTACCCACAGACACCAAGGAAAACTCAGAAAA...GTTTCCCCAAGTAAAGCTGAAGTGCAGATGATTCAGAGCTGACACTGGATGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp ACTTCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGATGGGGAGCCCCGGCTaGAGGCTATTGCCAGGACTG +
Preference number: 5 (lower is better)
Translates to: TSFKKIGLTQNSVQVAKLMGSPG*RLLPGL
Trigger: CAGTCCTGGCAATAGCCTCAAGCCGGGGCTCCCCAT...CAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp AGTATTGCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAATCTGGGGTCGGACTaGGTTGTACATTCCATCTCC +
Preference number: 5 (lower is better)
Translates to: SIAAKTAVVCTKFALGSSNLGSD*VVHSIS
Trigger: GGAGATGGAATGTACAACCAAGTCCGACCCCAGATT...TGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGCAATACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp ACTTCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGAGGCCCAGGAGGATGTaGGCACAGTGGACTGTGGAC +
Preference number: 5 (lower is better)
Translates to: TSFKKIGLTQNSVQVAKLRPRRM*AQWTVD
Trigger: GTCCACAGTCCACTGTGCCAACATCCTCCTGGGCCT...CAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCGACCCCATTGCGAAGTaGGACACATCCTTCTGGCCC +
Preference number: 5 (lower is better)
Translates to: SFKKIGLTQNSVQVAKLTDPIAK*DTSFWP
Trigger: GGGCCAGAAGGATGTGTCCAACTTCGCAATGGGGTC...GGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp GCTGCTAAGACTGCTGTAGTGTGCACCAAATTCGCTCTTGGTTCTTCAAGACACGTTAGCTTGTGCATTTaGATCATCATCTGGAAGTCG +
Preference number: 5 (lower is better)
Translates to: AAKTAVVCTKFALGSSRHVSLCI*IIIWKS
Trigger: CGACTTCCAGATGATGATCAAAATGCACAAGCTAAC...GTGTCTTGAAGAACCAAGAGCGAATTTGGTGCACACTACAGCAGTCTTAGCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp AAGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAATGGGCTGTTCGTCCGTaGTACACTTCTCAGTCATTT +
Preference number: 5 (lower is better)
Translates to: KQNSHVNSFQTSSGTRHKWAVRP*YTSQSF
Trigger: AAATGACTGAGAAGTGTACAACGGACGAACAGCCCA...TTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp AAGCAAAACAGCCATGTTAACAGCTTCCAAACCAGTTCTGGCACCAGACACAAATTTTCTGAGTTTTCCTaGGTGTCTGTGGGTACCTCA +
Preference number: 5 (lower is better)
Translates to: KQNSHVNSFQTSSGTRHKFSEFS*VSVGTS
Trigger: TGAGGTACCCACAGACACCAAGGAAAACTCAGAAAA...TTTGTGTCTGGTGCCAGAACTGGTTTGGAAGCTGTTAACATGGCTGTTTTGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCAATGTCCTTCTTCCGTaGGTCATTGAGGCCCAGGAG +
Preference number: 5 (lower is better)
Translates to: SFKKIGLTQNSVQVAKLTNVLLP*VIEAQE
Trigger: CTCCTGGGCCTCAATGACCAACGGAAGAAGGACATT...GGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp ACTTCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGCCACCCATAGACTTTTaGGCACCGGCTCCGAAAGGT +
Preference number: 5 (lower is better)
Translates to: TSFKKIGLTQNSVQVAKLPPIDF*APAPKG
Trigger: ACCTTTCGGAGCCGGTGCCAAAAAGTCTATGGGTGG...CAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp ACTTCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGTTCTTCCGTTGGTCATaGAGGCCCAGGAGGATGTTG +
Preference number: 5 (lower is better)
Translates to: TSFKKIGLTQNSVQVAKLFFRWS*RPRRML
Trigger: CAACATCCTCCTGGGCCTCAATGACCAACGGAAGAA...CAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTAATGTCCTTCTTCCGTaGGTCATTGAGGCCCAGGAG +
Preference number: 5 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTINVLLP*VIEAQE
Trigger: CTCCTGGGCCTCAATGACCAACGGAAGAAGGACATT...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp AATGTGAGTCTACCTGAAATGAGTGGTCTTGAATACACTTCCATGAATAGCCATTGGGCTGTTCGTCCGTaGTACACTTCTCAGTCATTT +
Preference number: 5 (lower is better)
Translates to: NVSLPEMSGLEYTSMNSHWAVRP*YTSQSF
Trigger: AAATGACTGAGAAGTGTACAACGGACGAACAGCCCA...ATGGCTATTCATGGAAGTGTATTCAAGACCACTCATTTCAGGTAGACTCACATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCATTCTGTCCAACCAGTGCTaGCCAGAAGTATTCACTGCA +
Preference number: 5 (lower is better)
Translates to: FKKIGLTQNSVQVAKLTILSNQC*PEVFTA
Trigger: TGCAGTGAATACTTCTGGCAAGCACTGGTTGGACAG...AATGGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS-3UTR CAA 90 bp TCATTTAAGAAAATAGGTTTGACTCAAAACTCAGTGCAAGTGGCAAAGTTGACCAGGTCTTTGTCCAAATaGCTCACCGCAGAGTATGAA +
Preference number: 5 (lower is better)
Translates to: SFKKIGLTQNSVQVAKLTRSLSK*LTAEYE
Trigger: TTCATACTCTGCGGTGAGCAATTTGGACAAAGACCT...GGTCAACTTTGCCACTTGCACTGAGTTTTGAGTCAAACCTATTTTCTTAAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 72 bp GAGAAGATGACGCTCCGGCGGTCCAGCTCTCCCTCCTaGTTACAGAGAGTCTCCGGCCCGGGCCCCCTGAGT +
Preference number: 6 (lower is better)
Translates to: EKMTLRRSSSPS*LQRVSGPGPLS
Trigger: ACTCAGGGGGCCCGGGCCGGAGACTCTCTGTAAGCAGGAGGGAGAGCTGGACCGCCGGAGCGTCATCTTCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 72 bp AGGGAGGCTGCAGGGGGAGCCCCCACTCCCGTCCTCTaGGTAGGAATACGAGGAGCAGGAGCTGGAGGTCCT +
Preference number: 6 (lower is better)
Translates to: REAAGGAPTPVL*VGIRGAGAGGP
Trigger: AGGACCTCCAGCTCCTGCTCCTCGTATTCCTACGCAGAGGACGGGAGTGGGGGCTCCCCCTGCAGCCTCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 72 bp CCTCCTGCTTACAGAGAGTCTCCGGCCCGGGCCCCCTaGGTGGCGACCCCATTGCGAAGTTGGACACATCCT +
Preference number: 6 (lower is better)
Translates to: PPAYRESPARAP*VATPLRSWTHP
Trigger: AGGATGTGTCCAACTTCGCAATGGGGTCGCCACTCAGGGGGCCCGGGCCGGAGACTCTCTGTAAGCAGGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 90 bp GAGGTCCTAGTCCTGGTCTCGAGCGGAGGTGAGCGAGGACAGACTTaGATTGGCACCGGGCAGCTGGTGTTGGGCCGTATCCTTCCTGGC +
Preference number: 6 (lower is better)
Translates to: EVLVLVSSGGERGQT*IGTGQLVLGRILPG
Trigger: GCCAGGAAGGATACGGCCCAACACCAGCTGCCCGGTGCCAATCAAAGTCTGTCCTCGCTCACCTCCGCTCGAGACCAGGACTAGGACCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 72 bp GAGTGTTCGGTTGGTCACACGCGCTTGCGGAGAAGATaGCGCTCCGGCGGTCCAGCTCTCCCTCCTGCTTAC +
Preference number: 6 (lower is better)
Translates to: ECSVGHTRLRRR*RSGGPALPPAY
Trigger: GTAAGCAGGAGGGAGAGCTGGACCGCCGGAGCGTCATCTTCTCCGCAAGCGCGTGTGACCAACCGAACACTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 72 bp TCCTGGTCTCGAGCGGAGGTGAGCGAGGACAGACTTTaGTTGGCACCGGGCAGCTGGTGTTGGGCCGTATCC +
Preference number: 6 (lower is better)
Translates to: SWSRAEVSEDRL*LAPGSWCWAVS
Trigger: GGATACGGCCCAACACCAGCTGCCCGGTGCCAATCAAAGTCTGTCCTCGCTCACCTCCGCTCGAGACCAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 72 bp GACAGGGCAGTAGCGGTGCAGGGCCTGGATCTGCTCTaGACTCTGGATGTCTCGACAGACCTCCTGGGAGAG +
Preference number: 6 (lower is better)
Translates to: DRAVAVQGLDLL*TLDVSTDLLGE
Trigger: CTCTCCCAGGAGGTCTGTCGAGACATCCAGAGTCCAGAGCAGATCCAGGCCCTGCACCGCTACTGCCCTGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 72 bp CTGCTTACAGAGAGTCTCCGGCCCGGGCCCCCTGAGTaGCGACCCCATTGCGAAGTTGGACACATCCTTCTG +
Preference number: 6 (lower is better)
Translates to: LLTESLRPGPPE*RPHCEVGHILL
Trigger: CAGAAGGATGTGTCCAACTTCGCAATGGGGTCGCCACTCAGGGGGCCCGGGCCGGAGACTCTCTGTAAGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 72 bp GTCCTGGTCTCGAGCGGAGGTGAGCGAGGACAGACTTaGATTGGCACCGGGCAGCTGGTGTTGGGCCGTATC +
Preference number: 6 (lower is better)
Translates to: VLVSSGGERGQT*IGTGQLVLGRI
Trigger: GATACGGCCCAACACCAGCTGCCCGGTGCCAATCAAAGTCTGTCCTCGCTCACCTCCGCTCGAGACCAGGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 90 bp GGAGGTGAGCGAGGACAGACTTTGATTGGCACCGGGCAGCTGGTGTaGGGCCGTATCCTTCCTGGCAAGTGGTCAGCCATCAGTCCGCTG +
Preference number: 6 (lower is better)
Translates to: GGERGQTLIGTGQLV*GRILPGKWSAISPL
Trigger: CAGCGGACTGATGGCTGACCACTTGCCAGGAAGGATACGGCCCAACACCAGCTGCCCGGTGCCAATCAAAGTCTGTCCTCGCTCACCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 72 bp AGGAGAACTTACAGAGAGTCTCCGGCCCGGGCCCCCTaGGTGGCGACCCCATTGCGAAGTTGGACACATCCT +
Preference number: 6 (lower is better)
Translates to: RRTYRESPARAP*VATPLRSWTHP
Trigger: AGGATGTGTCCAACTTCGCAATGGGGTCGCCACTCAGGGGGCCCGGGCCGGAGACTCTCTGTAAGTTCTCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037416.13
CDS CCA 72 bp GAACTTACAGAGAGTCTCCGGCCCGGGCCCCCTGAGTaGCGACCCCATTGCGAAGTTGGACACATCCTTCTG +
Preference number: 6 (lower is better)
Translates to: ELTESLRPGPPE*RPHCEVGHILL
Trigger: CAGAAGGATGTGTCCAACTTCGCAATGGGGTCGCCACTCAGGGGGCCCGGGCCGGAGACTCTCTGTAAGTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037416.13
CDS CCA 72 bp TACTGGGATGGCAGTGGCCTCAAAGCTGATGGGGTCTaGGAGCATCTGGTCTGTGGCGCAAGCCATCCTAGC +
Preference number: 6 (lower is better)
Translates to: YWDGSGLKADGV*EHLVCGASHPS
Trigger: GCTAGGATGGCTTGCGCCACAGACCAGATGCTCCCAGACCCCATCAGCTTTGAGGCCACTGCCATCCCAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 72 bp CGAGGACAGACTTTGATTGGCACCGGGCAGCTGGTGTaGGGCCGTATCCTTCCTGGCAAGTGGTCAGCCATC +
Preference number: 6 (lower is better)
Translates to: RGQTLIGTGQLV*GRILPGKWSAI
Trigger: GATGGCTGACCACTTGCCAGGAAGGATACGGCCCAACACCAGCTGCCCGGTGCCAATCAAAGTCTGTCCTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 72 bp GTCTGCAGGAAGCTGAAGCAGGAGTCCTCCAGATTGTaGATGCGCAGGAACTCAGCACAGCGGATGACCTCC +
Preference number: 6 (lower is better)
Translates to: VCRKLKQESSRL*MRRNSAQRMTS
Trigger: GGAGGTCATCCGCTGTGCTGAGTTCCTGCGCATGCACAATCTGGAGGACTCCTGCTTCAGCTTCCTGCAGAC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 72 bp TTCCATCTCCCATCAGGCCTGGTTCCTGATGTTCCGTaGCAAGGAATCTGGCTCCCTGGGAACAGGGCGAAG +
Preference number: 6 (lower is better)
Translates to: FHLPSGLVPDVP*QGIWLPGNRAK
Trigger: CTTCGCCCTGTTCCCAGGGAGCCAGATTCCTTGCCACGGAACATCAGGAACCAGGCCTGATGGGAGATGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 72 bp CTCACCGCAGAGTATGAATGCACTGGAGTGTTCGGTTaGTCACACGCGCTTGCGGAGAAGATGACGCTCCGG +
Preference number: 6 (lower is better)
Translates to: LTAEYECTGVFG*SHALAEKMTLR
Trigger: CCGGAGCGTCATCTTCTCCGCAAGCGCGTGTGACCAACCGAACACTCCAGTGCATTCATACTCTGCGGTGAG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 72 bp TCAGGCCTGGTTCCTGATGTTCCGTGGCAAGGAATCTaGCTCCCTGGGAACAGGGCGAAGAGGAGAACTCAC +
Preference number: 6 (lower is better)
Translates to: SGLVPDVPWQGI*LPGNRAKRRTH
Trigger: GTGAGTTCTCCTCTTCGCCCTGTTCCCAGGGAGCCAGATTCCTTGCCACGGAACATCAGGAACCAGGCCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 72 bp TGGGTCTGCAGGAAGCTGAAGCAGGAGTCCTCCAGATaGTGCATGCGCAGGAACTCAGCACAGCGGATGACC +
Preference number: 6 (lower is better)
Translates to: WVCRKLKQESSR*CMRRNSAQRMT
Trigger: GGTCATCCGCTGTGCTGAGTTCCTGCGCATGCACAATCTGGAGGACTCCTGCTTCAGCTTCCTGCAGACCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 90 bp GGGCTGGGTTGTTTTCGGTCCATCTCGACATCTCCTGGTCTGTCTTaGATGTCGGTCTCATCTCCGGACAGGCAGAGGGTGATGCTCTCC +
Preference number: 6 (lower is better)
Translates to: GLGCFRSISTSPGLS*MSVSSPDRQRVMLS
Trigger: GGAGAGCATCACCCTCTGCCTGTCCGGAGATGAGACCGACATCAAAGACAGACCAGGAGATGTCGAGATGGACCGAAAACAACCCAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 72 bp CTGCAAACAAACAGGCCATCCTCCCTGTTCAGGAGCTaGGTCTGCAGGAAGCTGAAGCAGGAGTCCTCCAGA +
Preference number: 6 (lower is better)
Translates to: LQTNRPSSLFRS*VCRKLKQESSR
Trigger: TCTGGAGGACTCCTGCTTCAGCTTCCTGCAGACCCAGCTCCTGAACAGGGAGGATGGCCTGTTTGTTTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 72 bp TCAGGCCTGGTTCCTGATGTTCCGTGGCAAGGAATCTaGCTCCCTGGGAACAGGGCGAAGAGGAGAACTTAC +
Preference number: 6 (lower is better)
Translates to: SGLVPDVPWQGI*LPGNRAKRRTY
Trigger: GTAAGTTCTCCTCTTCGCCCTGTTCCCAGGGAGCCAGATTCCTTGCCACGGAACATCAGGAACCAGGCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037416.13
CDS CCA 72 bp TCAGTCATTTCCTGGCAGAAGTCCACCGTCACAGACTaGCTCCTGGCTTCTAGGGGAGGTCCTCGTTCTGAG +
Preference number: 6 (lower is better)
Translates to: SVISWQKSTVTD*LLASRGGPRSE
Trigger: CTCAGAACGAGGACCTCCCCTAGAAGCCAGGAGCCAGTCTGTGACGGTGGACTTCTGCCAGGAAATGACTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 72 bp TGGGGAGGGACTGGCCAGCTCCCACCCATAGACTTTTaGGCACCGGCTCCGAAAGGTCTTTGTCCAAATTGC +
Preference number: 6 (lower is better)
Translates to: WGGTGQLPPIDF*APAPKGLCPNC
Trigger: GCAATTTGGACAAAGACCTTTCGGAGCCGGTGCCAAAAAGTCTATGGGTGGGAGCTGGCCAGTCCCTCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 90 bp CCTCTCCACGATCAGCGTCACGTCACAGAGAATGTCCTTCTTCCGTaGGTCATTGAGGCCCAGGAGGATGTTGGCACAGTGGACTGTGGA +
Preference number: 6 (lower is better)
Translates to: PLHDQRHVTENVLLP*VIEAQEDVGTVDCG
Trigger: TCCACAGTCCACTGTGCCAACATCCTCCTGGGCCTCAATGACCAACGGAAGAAGGACATTCTCTGTGACGTGACGCTGATCGTGGAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 72 bp TACCTCAGACTCAGGGAGCAGGGCTTCTTCTTTCTCTaGTACTGGGATGGCAGTGGCCTCAAAGCTGATGGG +
Preference number: 6 (lower is better)
Translates to: YLRLREQGFFFL*YWDGSGLKADG
Trigger: CCCATCAGCTTTGAGGCCACTGCCATCCCAGTAGCAGAGAAAGAAGAAGCCCTGCTCCCTGAGTCTGAGGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 72 bp GGGGAGGTCCTCGTTCTGAGAATGTTCCAGGGTCACTaGCTTCCAACCTCCTCCCAGAGGTACAATTCTCAG +
Preference number: 6 (lower is better)
Translates to: GEVLVLRMFQGH*LPTSSQRYNSQ
Trigger: CTGAGAATTGTACCTCTGGGAGGAGGTTGGAAGGCAGTGACCCTGGAACATTCTCAGAACGAGGACCTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 72 bp TTTCCTGGCAGAAGTCCACCGTCACAGACTGGCTCCTaGCTTCTAGGGGAGGTCCTCGTTCTGAGAATGTTC +
Preference number: 6 (lower is better)
Translates to: FPGRSPPSQTGS*LLGEVLVLRMF
Trigger: GAACATTCTCAGAACGAGGACCTCCCCTAGAAGCCAGGAGCCAGTCTGTGACGGTGGACTTCTGCCAGGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 72 bp TGGTTGTACATTCCATCTCCCATCAGGCCTGGTTCCTaGTGTTCCGTGGCAAGGAATCTGGCTCCCTGGGAA +
Preference number: 6 (lower is better)
Translates to: WLYIPSPIRPGS*CSVARNLAPWE
Trigger: TTCCCAGGGAGCCAGATTCCTTGCCACGGAACATCAGGAACCAGGCCTGATGGGAGATGGAATGTACAACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 72 bp GCTGACCACCAAGTCATCTTTCGTCTGTCCAACCAGTaGTTGCCAGAAGTATTCACTGCATGCGGCCAGCAC +
Preference number: 6 (lower is better)
Translates to: ADHQVIFRLSNQ*LPEVFTACGQH
Trigger: GTGCTGGCCGCATGCAGTGAATACTTCTGGCAAGCACTGGTTGGACAGACGAAAGATGACTTGGTGGTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 72 bp CGTTGGTCATTGAGGCCCAGGAGGATGTTGGCACAGTaGACTGTGGACTCATATACATACATGGGGGAGCCA +
Preference number: 6 (lower is better)
Translates to: RWSLRPRRMLAQ*TVDSYTYMGEP
Trigger: TGGCTCCCCCATGTATGTATATGAGTCCACAGTCCACTGTGCCAACATCCTCCTGGGCCTCAATGACCAACG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 72 bp ATCAGCGTCACGTCACAGAGAATGTCCTTCTTCCGTTaGTCATTGAGGCCCAGGAGGATGTTGGCACAGTGG +
Preference number: 6 (lower is better)
Translates to: ISVTSQRMSFFR*SLRPRRMLAQW
Trigger: CCACTGTGCCAACATCCTCCTGGGCCTCAATGACCAACGGAAGAAGGACATTCTCTGTGACGTGACGCTGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 72 bp AGGGCTGGGTTGTTTTCGGTCCATCTCGACATCTCCTaGTCTGTCTTTGATGTCGGTCTCATCTCCGGACAG +
Preference number: 6 (lower is better)
Translates to: RAGLFSVHLDIS*SVFDVGLISGQ
Trigger: CTGTCCGGAGATGAGACCGACATCAAAGACAGACCAGGAGATGTCGAGATGGACCGAAAACAACCCAGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 72 bp TCGGACTTGGTTGTACATTCCATCTCCCATCAGGCCTaGTTCCTGATGTTCCGTGGCAAGGAATCTGGCTCC +
Preference number: 6 (lower is better)
Translates to: SDLVVHSISHQA*FLMFRGKESGS
Trigger: GGAGCCAGATTCCTTGCCACGGAACATCAGGAACCAGGCCTGATGGGAGATGGAATGTACAACCAAGTCCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 72 bp GCTGCAATGCGGTTCTTACTCCGCCTCCGGATGTCGTaGATGAACTCCAACTGTTCTGAGGTTAGCTTGTGC +
Preference number: 6 (lower is better)
Translates to: AAMRFLLRLRMS*MNSNCSEVSLC
Trigger: GCACAAGCTAACCTCAGAACAGTTGGAGTTCATCCACGACATCCGGAGGCGGAGTAAGAACCGCATTGCAGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 72 bp GATCAGCGTCACGTCACAGAGAATGTCCTTCTTCCGTaGGTCATTGAGGCCCAGGAGGATGTTGGCACAGTG +
Preference number: 6 (lower is better)
Translates to: DQRHVTENVLLP*VIEAQEDVGTV
Trigger: CACTGTGCCAACATCCTCCTGGGCCTCAATGACCAACGGAAGAAGGACATTCTCTGTGACGTGACGCTGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 72 bp TGTTTTCGGTCCATCTCGACATCTCCTGGTCTGTCTTaGATGTCGGTCTCATCTCCGGACAGGCAGAGGGTG +
Preference number: 6 (lower is better)
Translates to: CFRSISTSPGLS*MSVSSPDRQRV
Trigger: CACCCTCTGCCTGTCCGGAGATGAGACCGACATCAAAGACAGACCAGGAGATGTCGAGATGGACCGAAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 72 bp ACAGGAAAAGGAAGTTTAACCTCCTGGCCCCTGTCCTaGACAGGACACGACTCACTGTCTGCTTCCGAGAAT +
Preference number: 6 (lower is better)
Translates to: TGKGSLTSWPLS*TGHDSLSASEN
Trigger: ATTCTCGGAAGCAGACAGTGAGTCGTGTCCTGTGCAGGACAGGGGCCAGGAGGTTAAACTTCCTTTTCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 72 bp AGGTCTTTGTCCAAATTGCTCACCGCAGAGTATGAATaGACTGGAGTGTTCGGTTGGTCACACGCGCTTGCG +
Preference number: 6 (lower is better)
Translates to: RSLSKLLTAEYE*TGVFGWSHALA
Trigger: CGCAAGCGCGTGTGACCAACCGAACACTCCAGTGCATTCATACTCTGCGGTGAGCAATTTGGACAAAGACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 90 bp CAGAGAATGTCCTTCTTCCGTTGGTCATTGAGGCCCAGGAGGATGTaGGCACAGTGGACTGTGGACTCATATACATACATGGGGGAGCCA +
Preference number: 6 (lower is better)
Translates to: QRMSFFRWSLRPRRM*AQWTVDSYTYMGEP
Trigger: TGGCTCCCCCATGTATGTATATGAGTCCACAGTCCACTGTGCCAACATCCTCCTGGGCCTCAATGACCAACGGAAGAAGGACATTCTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 90 bp CCAGCTCCCACCCATAGACTTTTTGGCACCGGCTCCGAAAGGTCTTaGTCCAAATTGCTCACCGCAGAGTATGAATGCACTGGAGTGTTC +
Preference number: 6 (lower is better)
Translates to: PAPTHRLFGTGSERS*SKLLTAEYECTGVF
Trigger: GAACACTCCAGTGCATTCATACTCTGCGGTGAGCAATTTGGACAAAGACCTTTCGGAGCCGGTGCCAAAAAGTCTATGGGTGGGAGCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 72 bp CTGCACAGGACACGACTCACTGTCTGCTTCCGAGAATaGTCCAGACTCGTCACTGGAATTGGTTCCGTAAGA +
Preference number: 6 (lower is better)
Translates to: LHRTRLTVCFRE*SRLVTGIGSVR
Trigger: TCTTACGGAACCAATTCCAGTGACGAGTCTGGATCATTCTCGGAAGCAGACAGTGAGTCGTGTCCTGTGCAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 72 bp CGAAAGGTCTTTGTCCAAATTGCTCACCGCAGAGTATaGATGCACTGGAGTGTTCGGTTGGTCACACGCGCT +
Preference number: 6 (lower is better)
Translates to: RKVFVQIAHRRV*MHWSVRLVTRA
Trigger: AGCGCGTGTGACCAACCGAACACTCCAGTGCATTCATACTCTGCGGTGAGCAATTTGGACAAAGACCTTTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 90 bp ACCCATAGACTTTTTGGCACCGGCTCCGAAAGGTCTTTGTCCAAATaGCTCACCGCAGAGTATGAATGCACTGGAGTGTTCGGTTGGTCA +
Preference number: 6 (lower is better)
Translates to: THRLFGTGSERSLSK*LTAEYECTGVFGWS
Trigger: TGACCAACCGAACACTCCAGTGCATTCATACTCTGCGGTGAGCAATTTGGACAAAGACCTTTCGGAGCCGGTGCCAAAAAGTCTATGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS TCA 72 bp ATCATCTGGAAGTCGTTCCTGGGAAGGTCTGTGATCTaGTCGACAGGAAAAGGAAGTTTAACCTCCTGGCCC +
Preference number: 6 (lower is better)
Translates to: IIWKSFLGRSVI*STGKGSLTSWP
Trigger: GGGCCAGGAGGTTAAACTTCCTTTTCCTGTCGATCAGATCACAGACCTTCCCAGGAACGACTTCCAGATGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 72 bp TCCTTCTTCCGTTGGTCATTGAGGCCCAGGAGGATGTaGGCACAGTGGACTGTGGACTCATATACATACATG +
Preference number: 6 (lower is better)
Translates to: SFFRWSLRPRRM*AQWTVDSYTYM
Trigger: CATGTATGTATATGAGTCCACAGTCCACTGTGCCAACATCCTCCTGGGCCTCAATGACCAACGGAAGAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 72 bp TCCGTAAGACTGCTCACATTTAATCTGGGGTCGGACTaGGTTGTACATTCCATCTCCCATCAGGCCTGGTTC +
Preference number: 6 (lower is better)
Translates to: SVRLLTFNLGSD*VVHSISHQAWF
Trigger: GAACCAGGCCTGATGGGAGATGGAATGTACAACCAAGTCCGACCCCAGATTAAATGTGAGCAGTCTTACGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 72 bp CTTTTTGGCACCGGCTCCGAAAGGTCTTTGTCCAAATaGCTCACCGCAGAGTATGAATGCACTGGAGTGTTC +
Preference number: 6 (lower is better)
Translates to: LFGTGSERSLSK*LTAEYECTGVF
Trigger: GAACACTCCAGTGCATTCATACTCTGCGGTGAGCAATTTGGACAAAGACCTTTCGGAGCCGGTGCCAAAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 90 bp TTATATCTAGGGTACTGGGTCAATGCACCCTTTTCTGAGTTTTCCTaGGTGTCTGTGGGTACCTCAGACTCAGGGAGCAGGGCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: LYLGYWVNAPFSEFS*VSVGTSDSGSRASS
Trigger: AGAAGAAGCCCTGCTCCCTGAGTCTGAGGTACCCACAGACACCAAGGAAAACTCAGAAAAGGGTGCATTGACCCAGTACCCTAGATATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 90 bp GGAATTGGTTCCGTAAGACTGCTCACATTTAATCTGGGGTCGGACTaGGTTGTACATTCCATCTCCCATCAGGCCTGGTTCCTGATGTTC +
Preference number: 6 (lower is better)
Translates to: GIGSVRLLTFNLGSD*VVHSISHQAWFLMF
Trigger: GAACATCAGGAACCAGGCCTGATGGGAGATGGAATGTACAACCAAGTCCGACCCCAGATTAAATGTGAGCAGTCTTACGGAACCAATTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CAA 72 bp ACCCATAGACTTTTTGGCACCGGCTCCGAAAGGTCTTaGTCCAAATTGCTCACCGCAGAGTATGAATGCACT +
Preference number: 6 (lower is better)
Translates to: THRLFGTGSERS*SKLLTAEYECT
Trigger: AGTGCATTCATACTCTGCGGTGAGCAATTTGGACAAAGACCTTTCGGAGCCGGTGCCAAAAAGTCTATGGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS CCA 72 bp GTACACGCGAGCTGGTACTTCTTATATCTAGGGTACTaGGTCAATGCACCCTTTTCTGAGTTTTCCTTGGTG +
Preference number: 6 (lower is better)
Translates to: VHASWYFLYLGY*VNAPFSEFSLV
Trigger: CACCAAGGAAAACTCAGAAAAGGGTGCATTGACCCAGTACCCTAGATATAAGAAGTACCAGCTCGCGTGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2
CDS GCA 72 bp TCGTGGATGAACTCCAACTGTTCTGAGGTTAGCTTGTaGATTTTGATCATCATCTGGAAGTCGTTCCTGGGA +
Preference number: 6 (lower is better)
Translates to: SWMNSNCSEVSL*ILIIIWKSFLG
Trigger: TCCCAGGAACGACTTCCAGATGATGATCAAAATGCACAAGCTAACCTCAGAACAGTTGGAGTTCATCCACGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037416.13
ENSMUST00000108180.9
ENSMUST00000171600.2