RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BACE1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032086

Ensembl transcript IDs: ENSMUST00000034591.11, ENSMUST00000078111.11, ENSMUST00000159499.2, ENSMUST00000162587.2

Found 253 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTGGTCGATACCACCAATGATCATGCTCCCTCCCACCGAGGCCAGTaGCTCGGTCTGGTTGAGGGGGAAGCCAGCGCCACAGAGCTGCAG +
Preference number: 1 (lower is better)
Translates to: VVDTTNDHAPSHRGQ*LGLVEGEASATELQ
Trigger: CTGCAGCTCTGTGGCGCTGGCTTCCCCCTCAACCAGACCGAGGCACTGGCCTCGGTGGGAGGGAGCATGATCATTGGTGGTATCGACCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159499.2
3UTR CCA 90 bp CCACCAATGATCATGCTCCCTCCCACCGAGGCCAGTGCCTCGGTCTaGTTGAGGGGGAAGCCAGCGCCACAGAGCTGCAGGGAAAAGATG +
Preference number: 1 (lower is better)
Translates to: PPMIMLPPTEASASV*LRGKPAPQSCREKM
Trigger: CATCTTTTCCCTGCAGCTCTGTGGCGCTGGCTTCCCCCTCAACCAGACCGAGGCACTGGCCTCGGTGGGAGGGAGCATGATCATTGGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159499.2
3UTR GCA 90 bp CTGGCAGTCTGTGGGTGTATTCCTACTCAGCCAGAGCAGCACCAGTaGGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGA +
Preference number: 1 (lower is better)
Translates to: LAVCGCIPTQPEQHQ*EGKEEDPAGNCDAG
Trigger: TCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTGGTGCTGCTCTGGCTGAGTAGGAATACACCCACAGACTGCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 90 bp GGAAGAGGTGAGTGTGGCCCCCACAACCTAGCCCAAGAACCAGCCTaGGTACCCATGGATTATATTGGGAGGGGCAGCAGAGAGCAGGAC +
Preference number: 1 (lower is better)
Translates to: GRGECGPHNLAQEPA*VPMDYIGRGSREQD
Trigger: GTCCTGCTCTCTGCTGCCCCTCCCAATATAATCCATGGGTACCCAGGCTGGTTCTTGGGCTAGGTTGTGGGGGCCACACTCACCTCTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR TCA 90 bp AACACTGGCTTCATGTCTGTCGTGTTAGAACTGGCAGGGAAGAGGTaGGTGTGGCCCCCACAACCTAGCCCAAGAACCAGCCTGGGTACC +
Preference number: 1 (lower is better)
Translates to: NTGFMSVVLELAGKR*VWPPQPSPRTSLGT
Trigger: GGTACCCAGGCTGGTTCTTGGGCTAGGTTGTGGGGGCCACACTCACCTCTTCCCTGCCAGTTCTAACACGACAGACATGAAGCCAGTGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 90 bp TCACGCCAGAAGCATTGGCAGGTTGGTGAGGGTCCTGAGGTGCTCTaGCCACAGGTACCATCCATAGCTCCAACTCATGTGACCAAAGGG +
Preference number: 1 (lower is better)
Translates to: SRQKHWQVGEGPEVL*PQVPSIAPTHVTKG
Trigger: CCCTTTGGTCACATGAGTTGGAGCTATGGATGGTACCTGTGGCCAGAGCACCTCAGGACCCTCACCAACCTGCCAATGCTTCTGGCGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR TCA 90 bp TGTCTCTTCCTCATCAACTGTCCCACACTTGGCAGGTCCCCAGCCTaGAAGCAGTGTAGAGCGTACCAGGAGAGGATGCAGTGGTCATCC +
Preference number: 1 (lower is better)
Translates to: CLFLINCPTLGRSPA*KQCRAYQERMQWSS
Trigger: GGATGACCACTGCATCCTCTCCTGGTACGCTCTACACTGCTTTCAGGCTGGGGACCTGCCAAGTGTGGGACAGTTGATGAGGAAGAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR TCA 90 bp CAGGCAGAGGCAAATGCATCAGCCCTAACCCTGCTGGATGAATCTTaGGGGCTCTGCCTTTGTGGATCAGAGAGGAGGACTCTCCTGTCT +
Preference number: 1 (lower is better)
Translates to: QAEANASALTLLDES*GLCLCGSERRTLLS
Trigger: AGACAGGAGAGTCCTCCTCTCTGATCCACAAAGGCAGAGCCCTCAAGATTCATCCAGCAGGGTTAGGGCTGATGCATTTGCCTCTGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 90 bp AAACACTCAGAGTCTGCCATGCCTGTTTGTATCACCTCTGCCCACTaGGCCTCCGTTCATACAGACGGTAGCAAAGCCCCACATACAGTG +
Preference number: 1 (lower is better)
Translates to: KHSESAMPVCITSAH*ASVHTDGSKAPHTV
Trigger: CACTGTATGTGGGGCTTTGCTACCGTCTGTATGAACGGAGGCCCAGTGGGCAGAGGTGATACAAACAGGCATGGCAGACTCTGAGTGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CCA 90 bp GCGAGCCCCAGAAAGGCAGCATTTTGGAGAGTGGACCTCCACAGTTaGAGCCTCATCACTGTGGCTCTATCTTTGCAGAGAAACAGTCAG +
Preference number: 1 (lower is better)
Translates to: ASPRKAAFWRVDLHS*SLITVALSLQRNSQ
Trigger: CTGACTGTTTCTCTGCAAAGATAGAGCCACAGTGATGAGGCTCCAACTGTGGAGGTCCACTCTCCAAAATGCTGCCTTTCTGGGGCTCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CCA 90 bp GAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTATTTTATTaGTTTATGGCTTGTGGGCAGCTGGCTGGGCCAGCAACTCCAGAG +
Preference number: 1 (lower is better)
Translates to: EEDPAGNCDAGFLFY*FMACGQLAGPATPE
Trigger: CTCTGGAGTTGCTGGCCCAGCCAGCTGCCCACAAGCCATAAACCAATAAAATAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 90 bp CGCAGGATTCTTATTTTATTGGTTTATGGCTTGTGGGCAGCTGGCTaGGCCAGCAACTCCAGAGGCCCTGCTAATGTCTCTTCCTCATCA +
Preference number: 1 (lower is better)
Translates to: RRILILLVYGLWAAG*ASNSRGPANVSSSS
Trigger: TGATGAGGAAGAGACATTAGCAGGGCCTCTGGAGTTGCTGGCCCAGCCAGCTGCCCACAAGCCATAAACCAATAAAATAAGAATCCTGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR GCA 90 bp AACTCAAGTTTGTGGTGTCTAAGGATATTCCTGCCACCAGAACGCTaGTTCCTTCCCTCTCCTGTGTCCTACAGGTGCAAGCCCTGTAAT +
Preference number: 1 (lower is better)
Translates to: NSSLWCLRIFLPPER*FLPSPVSYRCKPCN
Trigger: ATTACAGGGCTTGCACCTGTAGGACACAGGAGAGGGAAGGAAGCAGCGTTCTGGTGGCAGGAATATCCTTAGACACCACAAACTTGAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR GCA 90 bp GAGTGGACCTCCACAGTTGGAGCCTCATCACTGTGGCTCTATCTTTaGAGAGAAACAGTCAGAAAAACACTCAGAGTCTGCCATGCCTGT +
Preference number: 1 (lower is better)
Translates to: EWTSTVGASSLWLYL*RETVRKTLRVCHAC
Trigger: ACAGGCATGGCAGACTCTGAGTGTTTTTCTGACTGTTTCTCTGCAAAGATAGAGCCACAGTGATGAGGCTCCAACTGTGGAGGTCCACTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR TCA 90 bp GTGGATTCCCATCTGGAGGAAGATAGGTTTGCCACCGCCACTTACTaGGTTCTTCTGGTTTTTATGTCTGAGACAGCTGTGGCTCTGAGA +
Preference number: 1 (lower is better)
Translates to: VDSHLEEDRFATATY*VLLVFMSETAVALR
Trigger: TCTCAGAGCCACAGCTGTCTCAGACATAAAAACCAGAAGAACTCAGTAAGTGGCGGTGGCAAACCTATCTTCCTCCAGATGGGAATCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR GCA 90 bp CTATCTTTGCAGAGAAACAGTCAGAAAAACACTCAGAGTCTGCCATaGCTGTTTGTATCACCTCTGCCCACTGGGCCTCCGTTCATACAG +
Preference number: 1 (lower is better)
Translates to: LSLQRNSQKNTQSLP*LFVSPLPTGPPFIQ
Trigger: CTGTATGAACGGAGGCCCAGTGGGCAGAGGTGATACAAACAGGCATGGCAGACTCTGAGTGTTTTTCTGACTGTTTCTCTGCAAAGATAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CCA 90 bp GTCAGGGCTGAAGCTTCAAGCAGCAAAATTTCCAACTCAAGTTTGTaGTGTCTAAGGATATTCCTGCCACCAGAACGCTGCTTCCTTCCC +
Preference number: 1 (lower is better)
Translates to: VRAEASSSKISNSSL*CLRIFLPPERCFLP
Trigger: GGGAAGGAAGCAGCGTTCTGGTGGCAGGAATATCCTTAGACACCACAAACTTGAGTTGGAAATTTTGCTGCTTGAAGCTTCAGCCCTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 90 bp GCCCTACAATATTCTAACTGTTGTCCCATAGGGCACCTAAGACCTTaGGGTTGGGTCATTTTGGTGCCACTTAGCATGTTGAAGAAGCAG +
Preference number: 1 (lower is better)
Translates to: ALQYSNCCPIGHLRP*GWVILVPLSMLKKQ
Trigger: CTGCTTCTTCAACATGCTAAGTGGCACCAAAATGACCCAACCCCAAGGTCTTAGGTGCCCTATGGGACAACAGTTAGAATATTGTAGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR GCA 90 bp CCATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTaGCCCCAGGAGTATAAACATTCGCATCGCATAGGTTCTTGTTTA +
Preference number: 1 (lower is better)
Translates to: PSPSCLYPILSPHLD*PQEYKHSHRIGSCL
Trigger: TAAACAAGAACCTATGCGATGCGAATGTTTATACTCCTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 90 bp CAATATTCTAACTGTTGTCCCATAGGGCACCTAAGACCTTGGGGTTaGGTCATTTTGGTGCCACTTAGCATGTTGAAGAAGCAGAGAGAG +
Preference number: 1 (lower is better)
Translates to: QYSNCCPIGHLRPWG*VILVPLSMLKKQRE
Trigger: CTCTCTCTGCTTCTTCAACATGCTAAGTGGCACCAAAATGACCCAACCCCAAGGTCTTAGGTGCCCTATGGGACAACAGTTAGAATATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 90 bp GAAAGCCCTCTATCTTACAGTTGCTGTTTAATACTAGCCAATGCGTaGTGTTTCCTTAGCCAGATAAATAGAGGGGCCATTGGAGAGGGC +
Preference number: 1 (lower is better)
Translates to: ESPLSYSCCLILANA*CFLSQINRGAIGEG
Trigger: GCCCTCTCCAATGGCCCCTCTATTTATCTGGCTAAGGAAACACCACGCATTGGCTAGTATTAAACAGCAACTGTAAGATAGAGGGCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR GCA 90 bp GAGCTCCAGACAGGCACTGGGGTGAGATGTCTGTGCAAAATTACTTaGAGAATAATCGTGGGATGTTGGACTTCATTTATCAATCAAGAA +
Preference number: 1 (lower is better)
Translates to: ELQTGTGVRCLCKIT*RIIVGCWTSFINQE
Trigger: TTCTTGATTGATAAATGAAGTCCAACATCCCACGATTATTCTGCAAGTAATTTTGCACAGACATCTCACCCCAGTGCCTGTCTGGAGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CAA 90 bp CCAATGATCATGCTCCCTCCCACCGAGGCCAGTGCCTCGGTCTGGTaGAGGGGGAAGCCAGCGCCACAGAGCTGCAGGGAAAAGATGTTG +
Preference number: 2 (lower is better)
Translates to: PMIMLPPTEASASVW*RGKPAPQSCREKML
Trigger: CAACATCTTTTCCCTGCAGCTCTGTGGCGCTGGCTTCCCCCTCAACCAGACCGAGGCACTGGCCTCGGTGGGAGGGAGCATGATCATTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159499.2
3UTR-3UTR TCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTACTGGCAGGGAAGAGGTaGGTGTGGCCCCCACAACCT +
Preference number: 2 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLLAGKR*VWPPQP
Trigger: AGGTTGTGGGGGCCACACTCACCTCTTCCCTGCCAG...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR TCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTAGGCAGGTCCCCAGCCTaGAAGCAGTGTAGAGCGTAC +
Preference number: 2 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLGRSPA*KQCRAY
Trigger: GTACGCTCTACACTGCTTTCAGGCTGGGGACCTGCC...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR CCA 90 bp CCAATGATCATGCTCCCTCCCACCGAGGCCAGTGCCTCGGTCTGGTTGAGGGGGGCAGGGAAAAGATGTTaGGAATGTGGGTCTGCTTCA +
Preference number: 2 (lower is better)
Translates to: PMIMLPPTEASASVWLRGAGKRC*ECGSAS
Trigger: TGAAGCAGACCCACATTCCCAACATCTTTTCCCTGC...CCCCCTCAACCAGACCGAGGCACTGGCCTCGGTGGGAGGGAGCATGATCATTGG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159499.2
3UTR-3UTR GCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTAGTGAGGGTCCTGAGGTaGTCTGGCCACAGGTACCAT +
Preference number: 2 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLVRVLR*SGHRYH
Trigger: ATGGTACCTGTGGCCAGAGCACCTCAGGACCCTCAC...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR GCA 90 bp TCTGCTGACTTTGGCCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACGGAGACTCTAAAGGATaGTGGGCAGAGGGTCAGGGC +
Preference number: 2 (lower is better)
Translates to: SADFGQQGMRLALSLPGYGDSKG*WAEGQG
Trigger: GCCCTGACCCTCTGCCCAGCATCCTTTAGAGTCTCC...GTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGGCCAAAGTCAGCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR GCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTAGATTGGCCCTTTCTCTaGCAGGGTACCACAGGGACA +
Preference number: 2 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLDWPFL*QGTTGT
Trigger: TGTCCCTGTGGTACCCTGGCAGAGAAAGGGCCAATC...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR CCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTAGGTCCTGAGGTGCTCTaGCCACAGGTACCATCCATA +
Preference number: 2 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLGPEVL*PQVPSI
Trigger: TATGGATGGTACCTGTGGCCAGAGCACCTCAGGACC...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR CCA 90 bp GTGGACACACAGGAGGGTCAGGAGTTCAAGGCTAGCCTGAGCTACATGAGACCACAACTGTCCCACACTTaGCAGGTCCCCAGCCTGAAA +
Preference number: 2 (lower is better)
Translates to: VDTQEGQEFKASLSYMRPQLSHT*QVPSLK
Trigger: TTTCAGGCTGGGGACCTGCCAAGTGTGGGACAGTTG...TGGTCTCATGTAGCTCAGGCTAGCCTTGAACTCCTGACCCTCCTGTGTGTCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CCA 90 bp GTGGACACACAGGAGGGTCAGGAGTTCAAGGCTAGCCTGAGCTACATGAGACCAATCACCTCTGCCCACTaGGCCTCCGTTCATACAGAC +
Preference number: 2 (lower is better)
Translates to: VDTQEGQEFKASLSYMRPITSAH*ASVHTD
Trigger: GTCTGTATGAACGGAGGCCCAGTGGGCAGAGGTGAT...TGGTCTCATGTAGCTCAGGCTAGCCTTGAACTCCTGACCCTCCTGTGTGTCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR TCA 90 bp AGCCCAAGAACCAGCCTGGGTACCCATGGATTATATTGGGAGGGGCAGCAGAGAGCAGAGGGTCAGGGCTaGAGCTTCAAGCAGCAAAAT +
Preference number: 2 (lower is better)
Translates to: SPRTSLGTHGLYWEGQQRAEGQG*SFKQQN
Trigger: ATTTTGCTGCTTGAAGCTTCAGCCCTGACCCTCTGC...TCTCTGCTGCCCCTCCCAATATAATCCATGGGTACCCAGGCTGGTTCTTGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR TCA 90 bp CATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGGTTGGCCAGCAGGGAATaGGATTGGCCCTTTCTCTGC +
Preference number: 2 (lower is better)
Translates to: HLLPVSILSCLLILTAPRLASRE*DWPFLC
Trigger: GCAGAGAAAGGGCCAATCTCATTCCCTGCTGGCCAA...CCTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR GCA 90 bp TCTGCTGACTTTGGCCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACCCTGTGTCCTACAGGTaGAAGCCCTGTAATCCAGCT +
Preference number: 2 (lower is better)
Translates to: SADFGQQGMRLALSLPGYPVSYR*KPCNPA
Trigger: AGCTGGATTACAGGGCTTGCACCTGTAGGACACAGG...GTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGGCCAAAGTCAGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR GCA 90 bp GCCTTTGTGGATCAGAGAGGAGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGGGAGACTCTAAAGGATaGTGGGCAGAGGGTCAGGGC +
Preference number: 2 (lower is better)
Translates to: AFVDQRGGLSCLFLLAPWGDSKG*WAEGQG
Trigger: GCCCTGACCCTCTGCCCAGCATCCTTTAGAGTCTCC...CCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCTCCTCTCTGATCCACAAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR CCA 90 bp CATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGGGGTCCTGAGGTGCTCTaGCCACAGGTACCATCCATA +
Preference number: 2 (lower is better)
Translates to: HLLPVSILSCLLILTAPRGPEVL*PQVPSI
Trigger: TATGGATGGTACCTGTGGCCAGAGCACCTCAGGACC...CCTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR CCA 90 bp AGCCCAAGAACCAGCCTGGGTACCCATGGATTATATTGGGAGGGGCAGCAGAGAAGGGCTCTGCCTTTGTaGATCAGAGAGGAGGACTCT +
Preference number: 2 (lower is better)
Translates to: SPRTSLGTHGLYWEGQQRRALPL*IREEDS
Trigger: AGAGTCCTCCTCTCTGATCCACAAAGGCAGAGCCCT...TCTCTGCTGCCCCTCCCAATATAATCCATGGGTACCCAGGCTGGTTCTTGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR GCA 90 bp AGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGTTGGAGTGAACCTATGCTGGGTGAGGGTCCTGAGGTaGTCTGGCCACAGGTACCAT +
Preference number: 2 (lower is better)
Translates to: RTLLSVPFSTLVGVNLCWVRVLR*SGHRYH
Trigger: ATGGTACCTGTGGCCAGAGCACCTCAGGACCCTCAC...CCAGCATAGGTTCACTCCAACCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR GCA 90 bp AGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGTTGGAGTGAACCTATGCTGGCTGCCACCAGAACGCTaGTTCCTTCCCTCTCCTGTG +
Preference number: 2 (lower is better)
Translates to: RTLLSVPFSTLVGVNLCWLPPER*FLPSPV
Trigger: CACAGGAGAGGGAAGGAAGCAGCGTTCTGGTGGCAG...CCAGCATAGGTTCACTCCAACCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR GCA 90 bp AAGCCTGTAATCATGGCATATGGGAGGTGGACACACAGGAGGGTCAGGAGTTCACCAGGCAGAGGCAAATaGATCAGCCCTAACCCTGCT +
Preference number: 2 (lower is better)
Translates to: KPVIMAYGRWTHRRVRSSPGRGK*ISPNPA
Trigger: AGCAGGGTTAGGGCTGATGCATTTGCCTCTGCCTGG...TGAACTCCTGACCCTCCTGTGTGTCCACCTCCCATATGCCATGATTACAGGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CCA 90 bp GTGGACACACAGGAGGGTCAGGAGTTCAAGGCTAGCCTGAGCTACATGAGACCAACCCATGGATTATATTaGGAGGGGCAGCAGAGAGCA +
Preference number: 2 (lower is better)
Translates to: VDTQEGQEFKASLSYMRPTHGLY*EGQQRA
Trigger: TGCTCTCTGCTGCCCCTCCCAATATAATCCATGGGT...TGGTCTCATGTAGCTCAGGCTAGCCTTGAACTCCTGACCCTCCTGTGTGTCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTAACCCATGGATTATATTaGGAGGGGCAGCAGAGAGCA +
Preference number: 2 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLTHGLY*EGQQRA
Trigger: TGCTCTCTGCTGCCCCTCCCAATATAATCCATGGGT...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CAA 90 bp AGCGAGCCCCAGAAAGGCAGCATTTTGGAGAGTGGACCTCCACAGTaGGAGCCTCATCACTGTGGCTCTATCTTTGCAGAGAAACAGTCA +
Preference number: 2 (lower is better)
Translates to: SEPQKGSILESGPPQ*EPHHCGSIFAEKQS
Trigger: TGACTGTTTCTCTGCAAAGATAGAGCCACAGTGATGAGGCTCCAACTGTGGAGGTCCACTCTCCAAAATGCTGCCTTTCTGGGGCTCGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR TCA 90 bp GATGAAGGAAGGTGGTACAGTTGTAAGCTATGCTTTGTGGATTCCCATCTGGAGGGCAGGTCCCCAGCCTaGAAGCAGTGTAGAGCGTAC +
Preference number: 2 (lower is better)
Translates to: DEGRWYSCKLCFVDSHLEGRSPA*KQCRAY
Trigger: GTACGCTCTACACTGCTTTCAGGCTGGGGACCTGCC...CTCCAGATGGGAATCCACAAAGCATAGCTTACAACTGTACCACCTTCCTTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR GCA 90 bp AGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGTTGGAGTGAACCTATGCTGGGATTGGCCCTTTCTCTaGCAGGGTACCACAGGGACA +
Preference number: 2 (lower is better)
Translates to: RTLLSVPFSTLVGVNLCWDWPFL*QGTTGT
Trigger: TGTCCCTGTGGTACCCTGGCAGAGAAAGGGCCAATC...CCAGCATAGGTTCACTCCAACCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR GCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTATGCCTTTCCCAGTTTTaGTACCATCTCCTTCCTGTC +
Preference number: 2 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLCLSQF*YHLLPV
Trigger: GACAGGAAGGAGATGGTAGCAAAACTGGGAAAGGCA...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR CCA 90 bp AGTGAGATGAAGGAAGGTGGTACAGTTGTAAGCTATGCTTTGTGGATTCCCATCTTGTGGGCAGCTGGCTaGGCCAGCAACTCCAGAGGC +
Preference number: 2 (lower is better)
Translates to: SEMKEGGTVVSYALWIPILWAAG*ASNSRG
Trigger: GCCTCTGGAGTTGCTGGCCCAGCCAGCTGCCCACAA...GATGGGAATCCACAAAGCATAGCTTACAACTGTACCACCTTCCTTCATCTCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR TCA 90 bp CCATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGGTAATCCAGCTTGCCTaGTTTCTCTGTTCTGTCACG +
Preference number: 2 (lower is better)
Translates to: PSPSCLYPILSPHLDCPQVIQLA*FLCSVT
Trigger: CGTGACAGAACAGAGAAATCAGGCAAGCTGGATTAC...CTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR CCA 90 bp AAGCACAATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACCTTCCTGGCAGTCTGTaGGTGTATTCCTACTCAGCC +
Preference number: 2 (lower is better)
Translates to: KHNSQIFPLGQATIPCCYLPGSL*VYSYSA
Trigger: GGCTGAGTAGGAATACACCCACAGACTGCCAGGAAG...GTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATTGTGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CAA 90 bp AGAGTGGACCTCCACAGTTGGAGCCTCATCACTGTGGCTCTATCTTaGCAGAGAAACAGTCAGAAAAACACTCAGAGTCTGCCATGCCTG +
Preference number: 2 (lower is better)
Translates to: RVDLHSWSLITVALS*QRNSQKNTQSLPCL
Trigger: CAGGCATGGCAGACTCTGAGTGTTTTTCTGACTGTTTCTCTGCAAAGATAGAGCCACAGTGATGAGGCTCCAACTGTGGAGGTCCACTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR TCA 90 bp TGGATGAATCTTGAGGGCTCTGCCTTTGTGGATCAGAGAGGAGGACTCTCCTGTTTCACTTTCTTCTGCTaGCTTTGGCCAGCAGGGAAT +
Preference number: 2 (lower is better)
Translates to: WMNLEGSAFVDQRGGLSCFTFFC*LWPAGN
Trigger: ATTCCCTGCTGGCCAAAGTCAGCAGAAGAAAGTGAA...ACAGGAGAGTCCTCCTCTCTGATCCACAAAGGCAGAGCCCTCAAGATTCATCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR GCA 90 bp CCATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGCCCTGTAATCCAGCTTaGCTGATTTCTCTGTTCTGT +
Preference number: 2 (lower is better)
Translates to: PSPSCLYPILSPHLDCPQPCNPA*LISLFC
Trigger: ACAGAACAGAGAAATCAGGCAAGCTGGATTACAGGG...CTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR GCA 90 bp GCCTTTGTGGATCAGAGAGGAGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGTGCCTTTCCCAGTTTTaGTACCATCTCCTTCCTGTC +
Preference number: 2 (lower is better)
Translates to: AFVDQRGGLSCLFLLAPWCLSQF*YHLLPV
Trigger: GACAGGAAGGAGATGGTAGCAAAACTGGGAAAGGCA...CCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCTCCTCTCTGATCCACAAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR CCA 90 bp AAGCCTGTAATCATGGCATATGGGAGGTGGACACACAGGAGGGTCAGGAGTTCAATCGAGGAGGAGTTGTaGCACACACCTGTAATCCTA +
Preference number: 2 (lower is better)
Translates to: KPVIMAYGRWTHRRVRSSIEEEL*HTPVIL
Trigger: TAGGATTACAGGTGTGTGCCACAACTCCTCCTCGAT...TGAACTCCTGACCCTCCTGTGTGTCCACCTCCCATATGCCATGATTACAGGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR TCA 90 bp AAGCACAATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACGTAATCCAGCTTGCCTaGTTTCTCTGTTCTGTCACG +
Preference number: 2 (lower is better)
Translates to: KHNSQIFPLGQATIPCCYVIQLA*FLCSVT
Trigger: CGTGACAGAACAGAGAAATCAGGCAAGCTGGATTAC...GTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATTGTGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR GCA 90 bp AAGCCTGTAATCATGGCATATGGGAGGTGGACACACAGGAGGGTCAGGAGTTCACCCTGTAATCCAGCTTaGCTGATTTCTCTGTTCTGT +
Preference number: 2 (lower is better)
Translates to: KPVIMAYGRWTHRRVRSSPCNPA*LISLFC
Trigger: ACAGAACAGAGAAATCAGGCAAGCTGGATTACAGGG...TGAACTCCTGACCCTCCTGTGTGTCCACCTCCCATATGCCATGATTACAGGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CCA 90 bp TCTGCTGACTTTGGCCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACTCCAACTCAAGTTTGTaGTGTCTAAGGATATTCCTG +
Preference number: 2 (lower is better)
Translates to: SADFGQQGMRLALSLPGYSNSSL*CLRIFL
Trigger: CAGGAATATCCTTAGACACCACAAACTTGAGTTGGA...GTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGGCCAAAGTCAGCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR CCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTATCCAACTCAAGTTTGTaGTGTCTAAGGATATTCCTG +
Preference number: 2 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLSNSSL*CLRIFL
Trigger: CAGGAATATCCTTAGACACCACAAACTTGAGTTGGA...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CAA 90 bp AGGGTCAGGGCTGAAGCTTCAAGCAGCAAAATTTCCAACTCAAGTTaGTGGTGTCTAAGGATATTCCTGCCACCAGAACGCTGCTTCCTT +
Preference number: 2 (lower is better)
Translates to: RVRAEASSSKISNSS*WCLRIFLPPERCFL
Trigger: AAGGAAGCAGCGTTCTGGTGGCAGGAATATCCTTAGACACCACAAACTTGAGTTGGAAATTTTGCTGCTTGAAGCTTCAGCCCTGACCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR GCA 90 bp AGCCCAAGAACCAGCCTGGGTACCCATGGATTATATTGGGAGGGGCAGCAGAGACCTCTATCTTACAGTTaGTGTTTAATACTAGCCAAT +
Preference number: 2 (lower is better)
Translates to: SPRTSLGTHGLYWEGQQRPLSYS*CLILAN
Trigger: ATTGGCTAGTATTAAACAGCAACTGTAAGATAGAGG...TCTCTGCTGCCCCTCCCAATATAATCCATGGGTACCCAGGCTGGTTCTTGGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR GCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTACCTCTATCTTACAGTTaGTGTTTAATACTAGCCAAT +
Preference number: 2 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLPLSYS*CLILAN
Trigger: ATTGGCTAGTATTAAACAGCAACTGTAAGATAGAGG...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR GCA 90 bp AATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACTGGTTTTCTCTTGTTTTTCTCTaGCTTGCCTATGAGCTCATG +
Preference number: 2 (lower is better)
Translates to: NSQIFPLGQATIPCCYWFSLVFL*LAYELM
Trigger: CATGAGCTCATAGGCAAGGCAGAGAAAAACAAGAGA...AAACCAGTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CCA 90 bp GATGAAGGAAGGTGGTACAGTTGTAAGCTATGCTTTGTGGATTCCCATCTGGAGCAACCACAGGCACATTaGGGAATGATACCTCTTAGT +
Preference number: 2 (lower is better)
Translates to: DEGRWYSCKLCFVDSHLEQPQAH*GMIPLS
Trigger: ACTAAGAGGTATCATTCCCCAATGTGCCTGTGGTTG...CTCCAGATGGGAATCCACAAAGCATAGCTTACAACTGTACCACCTTCCTTCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CCA 90 bp AGTGAGATGAAGGAAGGTGGTACAGTTGTAAGCTATGCTTTGTGGATTCCCATCGCCCAAGAACCAGCCTaGGTACCCATGGATTATATT +
Preference number: 2 (lower is better)
Translates to: SEMKEGGTVVSYALWIPIAQEPA*VPMDYI
Trigger: AATATAATCCATGGGTACCCAGGCTGGTTCTTGGGC...GATGGGAATCCACAAAGCATAGCTTACAACTGTACCACCTTCCTTCATCTCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CAA 90 bp GTTGTAAGCTATGCTTTGTGGATTCCCATCTGGAGGAAGATAGGTTaGCCACCGCCACTTACTGAGTTCTTCTGGTTTTTATGTCTGAGA +
Preference number: 2 (lower is better)
Translates to: VVSYALWIPIWRKIG*PPPLTEFFWFLCLR
Trigger: TCTCAGACATAAAAACCAGAAGAACTCAGTAAGTGGCGGTGGCAAACCTATCTTCCTCCAGATGGGAATCCACAAAGCATAGCTTACAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR GCA 90 bp AATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACTGGTTTCTGTGGCTCTATCTTTaGAGAGAAACAGTCAGAAAA +
Preference number: 2 (lower is better)
Translates to: NSQIFPLGQATIPCCYWFLWLYL*RETVRK
Trigger: TTTTCTGACTGTTTCTCTGCAAAGATAGAGCCACAG...AAACCAGTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CCA 90 bp AAGCACAATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACGTGACCTCCTTTCTTTaGTTAATGAAGTACTTCTGT +
Preference number: 2 (lower is better)
Translates to: KHNSQIFPLGQATIPCCYVTSFL*LMKYFC
Trigger: ACAGAAGTACTTCATTAACCAAAGAAAGGAGGTCAC...GTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATTGTGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CAA 90 bp CTACTGACAATTGATGTTTTCCCATCCTGGGACTGGGGGTGCTTATaGAGTCTAGCAGTTTCTGTTAGGATAGCAAAGACTTTGTCCTTT +
Preference number: 2 (lower is better)
Translates to: LLTIDVFPSWDWGCL*SLAVSVRIAKTLSF
Trigger: AAAGGACAAAGTCTTTGCTATCCTAACAGAAACTGCTAGACTCAATAAGCACCCCCAGTCCCAGGATGGGAAAACATCAATTGTCAGTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CCA 90 bp ATGGATGAATTCTTTTCTCTTGCCTTATTGTCCAGGTTGATTGATAAGCATGATATGCAGTGGTCATCCTaGGAAAACCCAGCTCTTCCC +
Preference number: 2 (lower is better)
Translates to: MDEFFSLALLSRLIDKHDMQWSS*ENPALP
Trigger: GGGAAGAGCTGGGTTTTCCCAGGATGACCACTGCAT...ATCATGCTTATCAATCAACCTGGACAATAAGGCAAGAGAAAAGAATTCATCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CAA 90 bp TTTATTTCATGTGGCAGATTCATTCATTCATTTTCTGTCTTAAGATaGCTCTCTCCCTTCAACTGTGCAGCATCCAGCACTAGCTATGTA +
Preference number: 2 (lower is better)
Translates to: FISCGRFIHSFSVLR*LSPFNCAASSTSYV
Trigger: TACATAGCTAGTGCTGGATGCTGCACAGTTGAAGGGAGAGAGCAATCTTAAGACAGAAAATGAATGAATGAATCTGCCACATGAAATAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CAA 90 bp TCCTTTCTTTGGTTAATGAAGTACTTCTGTCTTCTTGTCTCCAGTTaGGTACTACTTGAACAGAAAAAGGTGGCAAAATGGAAGTCTACT +
Preference number: 2 (lower is better)
Translates to: SFLWLMKYFCLLVSS*VLLEQKKVAKWKST
Trigger: AGTAGACTTCCATTTTGCCACCTTTTTCTGTTCAAGTAGTACCAAACTGGAGACAAGAAGACAGAAGTACTTCATTAACCAAAGAAAGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CCA 72 bp ATCATGCTCCCTCCCACCGAGGCCAGTGCCTCGGTCTaGTTGAGGGGGAAGCCAGCGCCACAGAGCTGCAGG +
Preference number: 3 (lower is better)
Translates to: IMLPPTEASASV*LRGKPAPQSCR
Trigger: CCTGCAGCTCTGTGGCGCTGGCTTCCCCCTCAACCAGACCGAGGCACTGGCCTCGGTGGGAGGGAGCATGAT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159499.2
3UTR TCA 72 bp GACTGCCCGTGTATAGCGAGTGGTCGATACCACCAATaGTCATGCTCCCTCCCACCGAGGCCAGTGCCTCGG +
Preference number: 3 (lower is better)
Translates to: DCPCIASGRYHQ*SCSLPPRPVPR
Trigger: CCGAGGCACTGGCCTCGGTGGGAGGGAGCATGATCATTGGTGGTATCGACCACTCGCTATACACGGGCAGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159499.2
3UTR CCA 72 bp GAGTGTGGCCCCCACAACCTAGCCCAAGAACCAGCCTaGGTACCCATGGATTATATTGGGAGGGGCAGCAGA +
Preference number: 3 (lower is better)
Translates to: ECGPHNLAQEPA*VPMDYIGRGSR
Trigger: TCTGCTGCCCCTCCCAATATAATCCATGGGTACCCAGGCTGGTTCTTGGGCTAGGTTGTGGGGGCCACACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 72 bp TCAGAGCGAGCCCCAGAAAGGCAGCATTTTGGAGAGTaGACCTCCACAGTTGGAGCCTCATCACTGTGGCTC +
Preference number: 3 (lower is better)
Translates to: SERAPERQHFGE*TSTVGASSLWL
Trigger: GAGCCACAGTGATGAGGCTCCAACTGTGGAGGTCCACTCTCCAAAATGCTGCCTTTCTGGGGCTCGCTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CAA 90 bp CCATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGAGAAGCATTGGCAGGTaGGTGAGGGTCCTGAGGTGC +
Preference number: 3 (lower is better)
Translates to: PSPSCLYPILSPHLDCPQRSIGR*VRVLRC
Trigger: GCACCTCAGGACCCTCACCAACCTGCCAATGCTTCT...CTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR CAA 90 bp AGCCCAAGAACCAGCCTGGGTACCCATGGATTATATTGGGAGGGGCAGCAGAGATTGAGGGCTCTGCCTTaGTGGATCAGAGAGGAGGAC +
Preference number: 3 (lower is better)
Translates to: SPRTSLGTHGLYWEGQQRLRALP*WIREED
Trigger: GTCCTCCTCTCTGATCCACAAAGGCAGAGCCCTCAA...TCTCTGCTGCCCCTCCCAATATAATCCATGGGTACCCAGGCTGGTTCTTGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR TCA 72 bp TTCATGTCTGTCGTGTTAGAACTGGCAGGGAAGAGGTaGGTGTGGCCCCCACAACCTAGCCCAAGAACCAGC +
Preference number: 3 (lower is better)
Translates to: FMSVVLELAGKR*VWPPQPSPRTS
Trigger: GCTGGTTCTTGGGCTAGGTTGTGGGGGCCACACTCACCTCTTCCCTGCCAGTTCTAACACGACAGACATGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR GCA 72 bp CAGCCTGAAAGCAGTGTAGAGCGTACCAGGAGAGGATaGAGTGGTCATCCTGGGAAAACCCAGCTCTTCCCA +
Preference number: 3 (lower is better)
Translates to: QPESSVERTRRG*SGHPGKTQLFP
Trigger: TGGGAAGAGCTGGGTTTTCCCAGGATGACCACTGCATCCTCTCCTGGTACGCTCTACACTGCTTTCAGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 72 bp AAGCATTGGCAGGTTGGTGAGGGTCCTGAGGTGCTCTaGCCACAGGTACCATCCATAGCTCCAACTCATGTG +
Preference number: 3 (lower is better)
Translates to: KHWQVGEGPEVL*PQVPSIAPTHV
Trigger: CACATGAGTTGGAGCTATGGATGGTACCTGTGGCCAGAGCACCTCAGGACCCTCACCAACCTGCCAATGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 72 bp ATGGGTGTGTACCAGAGACTGCCCGTGTATAGCGAGTaGTCGATACCACCAATGATCATGCTCCCTCCCACC +
Preference number: 3 (lower is better)
Translates to: MGVYQRLPVYSE*SIPPMIMLPPT
Trigger: GGTGGGAGGGAGCATGATCATTGGTGGTATCGACCACTCGCTATACACGGGCAGTCTCTGGTACACACCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159499.2
3UTR-3UTR CAA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTACTGCCTTTCCCAGTTTaGCTACCATCTCCTTCCTGT +
Preference number: 3 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLLPFPV*LPSPSC
Trigger: ACAGGAAGGAGATGGTAGCAAAACTGGGAAAGGCAG...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR TCA 72 bp GCAAATGCATCAGCCCTAACCCTGCTGGATGAATCTTaGGGGCTCTGCCTTTGTGGATCAGAGAGGAGGACT +
Preference number: 3 (lower is better)
Translates to: ANASALTLLDES*GLCLCGSERRT
Trigger: AGTCCTCCTCTCTGATCCACAAAGGCAGAGCCCTCAAGATTCATCCAGCAGGGTTAGGGCTGATGCATTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR TCA 72 bp TCCCTTGTTGCTACTGGTTTAGCCTCCACTAAGCACTaGCCAGCCAGGCTTGCAAAGTGCTCACCCTTCCAT +
Preference number: 3 (lower is better)
Translates to: SLVATGLASTKH*PARLAKCSPFH
Trigger: ATGGAAGGGTGAGCACTTTGCAAGCCTGGCTGGTCAGTGCTTAGTGGAGGCTAAACCAGTAGCAACAAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CAA 90 bp AATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACTGGTTTAGAAGCATTGGCAGGTaGGTGAGGGTCCTGAGGTGC +
Preference number: 3 (lower is better)
Translates to: NSQIFPLGQATIPCCYWFRSIGR*VRVLRC
Trigger: GCACCTCAGGACCCTCACCAACCTGCCAATGCTTCT...AAACCAGTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CAA 90 bp CCATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGCTCAAGACGCAGTCTTaGTACCAGTGTAGGCTTGAG +
Preference number: 3 (lower is better)
Translates to: PSPSCLYPILSPHLDCPQLKTQS*YQCRLE
Trigger: CTCAAGCCTACACTGGTACAAAGACTGCGTCTTGAG...CTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR TCA 72 bp CTCTCCTGTCTGTTCCTTTTAGCACCTTGGTTGGAGTaGACCTATGCTGGGAAGACCATCCCTAGCCCTACA +
Preference number: 3 (lower is better)
Translates to: LSCLFLLAPWLE*TYAGKTIPSPT
Trigger: TGTAGGGCTAGGGATGGTCTTCCCAGCATAGGTTCACTCCAACCAAGGTGCTAAAAGGAACAGACAGGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 72 bp ACACACACACACACGGTTTCTATCGAGGAGGAGTTGTaGCACACACCTGTAATCCTAGCACTCAGGAGGCAA +
Preference number: 3 (lower is better)
Translates to: THTHTVSIEEEL*HTPVILALRRQ
Trigger: TTGCCTCCTGAGTGCTAGGATTACAGGTGTGTGCCACAACTCCTCCTCGATAGAAACCGTGTGTGTGTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CAA 90 bp AGTGAGATGAAGGAAGGTGGTACAGTTGTAAGCTATGCTTTGTGGATTCCCATCCAGCAGGGAATGAGATaGGCCCTTTCTCTGCCAGGG +
Preference number: 3 (lower is better)
Translates to: SEMKEGGTVVSYALWIPIQQGMR*ALSLPG
Trigger: CCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTG...GATGGGAATCCACAAAGCATAGCTTACAACTGTACCACCTTCCTTCATCTCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CAA 90 bp AGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGTTGGAGTGAACCTATGCTGGTGTACCAGTGTAGGCTaGAGTCTGCAGTCCCTATCA +
Preference number: 3 (lower is better)
Translates to: RTLLSVPFSTLVGVNLCWCTSVG*SLQSLS
Trigger: TGATAGGGACTGCAGACTCAAGCCTACACTGGTACA...CCAGCATAGGTTCACTCCAACCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR TCA 72 bp ACTCAGGAGGCAAAGGCAGGAACGTTGCTACAAGTTTaGGGCCAGCCTGATCTACATGAGATGCTGTCAAAG +
Preference number: 3 (lower is better)
Translates to: TQEAKAGTLLQV*GQPDLHEMLSK
Trigger: CTTTGACAGCATCTCATGTAGATCAGGCTGGCCTCAAACTTGTAGCAACGTTCCTGCCTTTGCCTCCTGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR GCA 72 bp CTTTGCAGAGAAACAGTCAGAAAAACACTCAGAGTCTaGCATGCCTGTTTGTATCACCTCTGCCCACTGGGC +
Preference number: 3 (lower is better)
Translates to: LCRETVRKTLRV*HACLYHLCPLG
Trigger: GCCCAGTGGGCAGAGGTGATACAAACAGGCATGGCAGACTCTGAGTGTTTTTCTGACTGTTTCTCTGCAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CCA 72 bp GAAACTGTGACGCAGGATTCTTATTTTATTGGTTTATaGCTTGTGGGCAGCTGGCTGGGCCAGCAACTCCAG +
Preference number: 3 (lower is better)
Translates to: ETVTQDSYFIGL*LVGSWLGQQLQ
Trigger: CTGGAGTTGCTGGCCCAGCCAGCTGCCCACAAGCCATAAACCAATAAAATAAGAATCCTGCGTCACAGTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 72 bp AGAAAGGCAGCATTTTGGAGAGTGGACCTCCACAGTTaGAGCCTCATCACTGTGGCTCTATCTTTGCAGAGA +
Preference number: 3 (lower is better)
Translates to: RKAAFWRVDLHS*SLITVALSLQR
Trigger: TCTCTGCAAAGATAGAGCCACAGTGATGAGGCTCCAACTGTGGAGGTCCACTCTCCAAAATGCTGCCTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CAA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTAGAGATGAGTCTAAACTaGGAACTAGAAAGTGATCAG +
Preference number: 3 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLEMSLN*ELESDQ
Trigger: CTGATCACTTTCTAGTTCCAAGTTTAGACTCATCTC...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 72 bp AACTGTTGTCCCATAGGGCACCTAAGACCTTGGGGTTaGGTCATTTTGGTGCCACTTAGCATGTTGAAGAAG +
Preference number: 3 (lower is better)
Translates to: NCCPIGHLRPWG*VILVPLSMLKK
Trigger: CTTCTTCAACATGCTAAGTGGCACCAAAATGACCCAACCCCAAGGTCTTAGGTGCCCTATGGGACAACAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 72 bp TTAAACATAGTGGCACAAGCCTGTAATCATGGCATATaGGAGGTGGACACACAGGAGGGTCAGGAGTTCAAG +
Preference number: 3 (lower is better)
Translates to: LNIVAQACNHGI*EVDTQEGQEFK
Trigger: CTTGAACTCCTGACCCTCCTGTGTGTCCACCTCCCATATGCCATGATTACAGGCTTGTGCCACTATGTTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CCA 72 bp GGTACAGTTGTAAGCTATGCTTTGTGGATTCCCATCTaGAGGAAGATAGGTTTGCCACCGCCACTTACTGAG +
Preference number: 3 (lower is better)
Translates to: GTVVSYALWIPI*RKIGLPPPLTE
Trigger: CTCAGTAAGTGGCGGTGGCAAACCTATCTTCCTCCAGATGGGAATCCACAAAGCATAGCTTACAACTGTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CAA 90 bp TCTGCTGACTTTGGCCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACAAAGAATACTTTAGGTaGGAGACTCTAAAGGATGCT +
Preference number: 3 (lower is better)
Translates to: SADFGQQGMRLALSLPGYKEYFR*ETLKDA
Trigger: AGCATCCTTTAGAGTCTCCAACCTAAAGTATTCTTT...GTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGGCCAAAGTCAGCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR CAA 90 bp AATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACTGGTTTGTGGCTCTGAGAACCTaGAGTCTTTCCCAATCTTTA +
Preference number: 3 (lower is better)
Translates to: NSQIFPLGQATIPCCYWFVALRT*SLSQSL
Trigger: TAAAGATTGGGAAAGACTCAAGGTTCTCAGAGCCAC...AAACCAGTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR TCA 72 bp CACCGCCACTTACTGAGTTCTTCTGGTTTTTATGTCTaGGACAGCTGTGGCTCTGAGAACCTTGAGTCTTTC +
Preference number: 3 (lower is better)
Translates to: HRHLLSSSGFYV*DSCGSENLESF
Trigger: GAAAGACTCAAGGTTCTCAGAGCCACAGCTGTCTCAGACATAAAAACCAGAAGAACTCAGTAAGTGGCGGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CCA 72 bp TATTCTAACTGTTGTCCCATAGGGCACCTAAGACCTTaGGGTTGGGTCATTTTGGTGCCACTTAGCATGTTG +
Preference number: 3 (lower is better)
Translates to: YSNCCPIGHLRP*GWVILVPLSML
Trigger: CAACATGCTAAGTGGCACCAAAATGACCCAACCCCAAGGTCTTAGGTGCCCTATGGGACAACAGTTAGAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR CAA 90 bp AGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGTTGGAGTGAACCTATGCTGGGAGATGAGTCTAAACTaGGAACTAGAAAGTGATCAG +
Preference number: 3 (lower is better)
Translates to: RTLLSVPFSTLVGVNLCWEMSLN*ELESDQ
Trigger: CTGATCACTTTCTAGTTCCAAGTTTAGACTCATCTC...CCAGCATAGGTTCACTCCAACCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 72 bp GAAGCTTCAAGCAGCAAAATTTCCAACTCAAGTTTGTaGTGTCTAAGGATATTCCTGCCACCAGAACGCTGC +
Preference number: 3 (lower is better)
Translates to: EASSSKISNSSL*CLRIFLPPERC
Trigger: GCAGCGTTCTGGTGGCAGGAATATCCTTAGACACCACAAACTTGAGTTGGAAATTTTGCTGCTTGAAGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CCA 72 bp GGTAACATGCTACTGACAATTGATGTTTTCCCATCCTaGGACTGGGGGTGCTTATTGAGTCTAGCAGTTTCT +
Preference number: 3 (lower is better)
Translates to: GNMLLTIDVFPS*DWGCLLSLAVS
Trigger: AGAAACTGCTAGACTCAATAAGCACCCCCAGTCCCAGGATGGGAAAACATCAATTGTCAGTAGCATGTTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR TCA 72 bp TGGATGAATTCTTTTCTCTTGCCTTATTGTCCAGGTTaGTTGATAAGCATGATTAGGGGTGGACTTCCCAGG +
Preference number: 3 (lower is better)
Translates to: WMNSFLLPYCPG*LISMIRGGLPR
Trigger: CCTGGGAAGTCCACCCCTAATCATGCTTATCAATCAACCTGGACAATAAGGCAAGAGAAAAGAATTCATCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR GCA 72 bp ACAGGCACTGGGGTGAGATGTCTGTGCAAAATTACTTaGAGAATAATCGTGGGATGTTGGACTTCATTTATC +
Preference number: 3 (lower is better)
Translates to: TGTGVRCLCKIT*RIIVGCWTSFI
Trigger: GATAAATGAAGTCCAACATCCCACGATTATTCTGCAAGTAATTTTGCACAGACATCTCACCCCAGTGCCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CCA 72 bp CTATCTTACAGTTGCTGTTTAATACTAGCCAATGCGTaGTGTTTCCTTAGCCAGATAAATAGAGGGGCCATT +
Preference number: 3 (lower is better)
Translates to: LSYSCCLILANA*CFLSQINRGAI
Trigger: AATGGCCCCTCTATTTATCTGGCTAAGGAAACACCACGCATTGGCTAGTATTAAACAGCAACTGTAAGATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR-3UTR CAA 90 bp ATGGATGAATTCTTTTCTCTTGCCTTATTGTCCAGGTTGATTGATAAGCATGATCTCAAGACGCAGTCTTaGTACCAGTGTAGGCTTGAG +
Preference number: 3 (lower is better)
Translates to: MDEFFSLALLSRLIDKHDLKTQS*YQCRLE
Trigger: CTCAAGCCTACACTGGTACAAAGACTGCGTCTTGAG...ATCATGCTTATCAATCAACCTGGACAATAAGGCAAGAGAAAAGAATTCATCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR-3UTR CAA 90 bp ATGGATGAATTCTTTTCTCTTGCCTTATTGTCCAGGTTGATTGATAAGCATGATAAAGAATACTTTAGGTaGGAGACTCTAAAGGATGCT +
Preference number: 3 (lower is better)
Translates to: MDEFFSLALLSRLIDKHDKEYFR*ETLKDA
Trigger: AGCATCCTTTAGAGTCTCCAACCTAAAGTATTCTTT...ATCATGCTTATCAATCAACCTGGACAATAAGGCAAGAGAAAAGAATTCATCCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CAA 72 bp ATGCTCCCTCCCACCGAGGCCAGTGCCTCGGTCTGGTaGAGGGGGAAGCCAGCGCCACAGAGCTGCAGGGAA +
Preference number: 4 (lower is better)
Translates to: MLPPTEASASVW*RGKPAPQSCRE
Trigger: TTCCCTGCAGCTCTGTGGCGCTGGCTTCCCCCTCAACCAGACCGAGGCACTGGCCTCGGTGGGAGGGAGCAT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159499.2
CDS-3UTR GCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTAGGGGTCGTGCCTGCTTaGCAGCACACCAGCTGCTCC +
Preference number: 4 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLGVVPA*QHTSCS
Trigger: GGAGCAGCTGGTGTGCTGGCAAGCAGGCACGACCCC...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp CCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACCACAGGGACACATGCCAAGGGGTCGTGCCTaGTTGCCAGCACACCAGCTG +
Preference number: 4 (lower is better)
Translates to: PAGNEIGPFSARVPQGHMPRGRA*LPAHQL
Trigger: CAGCTGGTGTGCTGGCAAGCAGGCACGACCCCTTGG...CATGTGTCCCTGTGGTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp AGCCCAAGAACCAGCCTGGGTACCCATGGATTATATTGGGAGGGGCAGCAGAGAAGCCGGATGCCGAGATaGGTTCCCTGGGCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: SPRTSLGTHGLYWEGQQRSRMPR*VPWAGS
Trigger: GCTGCCTGCCCAGGGAACCCATCTCGGCATCCGGCT...TCTCTGCTGCCCCTCCCAATATAATCCATGGGTACCCAGGCTGGTTCTTGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp CCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACCACAGGGACACATGTGTTGGCACGCACAGTaGCGTTGGGGCCATGAGGGA +
Preference number: 4 (lower is better)
Translates to: PAGNEIGPFSARVPQGHMCWHAQ*RWGHEG
Trigger: TCCCTCATGGCCCCAACGTCACTGTGCGTGCCAACA...CATGTGTCCCTGTGGTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTAGGCAGAGTGGCAACATaGAGAGGGCGCAGATGGCCG +
Preference number: 4 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLGRVAT*RGRRWP
Trigger: CGGCCATCTGCGCCCTCTTCATGTTGCCACTCTGCC...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp CCATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGGAAGGGGCAGCCGGATaGCGAGATGGGTTCCCTGGG +
Preference number: 4 (lower is better)
Translates to: PSPSCLYPILSPHLDCPQEGAAG*RDGFPG
Trigger: CCCAGGGAACCCATCTCGGCATCCGGCTGCCCCTTC...CTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp CCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACCACAGGGACACATGCCATCTCCACAAAGCTaGCTCTCCGGCCAGGCTCCT +
Preference number: 4 (lower is better)
Translates to: PAGNEIGPFSARVPQGHMPSPQS*LSGQAP
Trigger: AGGAGCCTGGCCGGAGAGGCAGCTTTGTGGAGATGG...CATGTGTCCCTGTGGTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp CCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACCACAGGGACACATGGTTCCCCCTCCCACTTaGCCTGGGTGTAGGGCACAT +
Preference number: 4 (lower is better)
Translates to: PAGNEIGPFSARVPQGHMVPPPT*PGCRAH
Trigger: ATGTGCCCTACACCCAGGGCAAGTGGGAGGGGGAAC...CATGTGTCCCTGTGGTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTATGCTCACCAGGTCGGTaGCCAGTTCCCCCTCCCACT +
Preference number: 4 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLCSPGR*PVPPPT
Trigger: AGTGGGAGGGGGAACTGGGCACCGACCTGGTGAGCA...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp CCATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGGCCAGTGCCTCGGTCTaGTTGAGGGGGAAGCCAGCG +
Preference number: 4 (lower is better)
Translates to: PSPSCLYPILSPHLDCPQASASV*LRGKPA
Trigger: CGCTGGCTTCCCCCTCAACCAGACCGAGGCACTGGC...CTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp AGCCCAAGAACCAGCCTGGGTACCCATGGATTATATTGGGAGGGGCAGCAGAGAGTTCCCCCTCCCACTTaGCCTGGGTGTAGGGCACAT +
Preference number: 4 (lower is better)
Translates to: SPRTSLGTHGLYWEGQQRVPPPT*PGCRAH
Trigger: ATGTGCCCTACACCCAGGGCAAGTGGGAGGGGGAAC...TCTCTGCTGCCCCTCCCAATATAATCCATGGGTACCCAGGCTGGTTCTTGGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp CATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGGCCGAGATGGGTTCCCTaGGCAGGCAGCATTCCCGAG +
Preference number: 4 (lower is better)
Translates to: HLLPVSILSCLLILTAPRPRWVP*AGSIPE
Trigger: CTCGGGAATGCTGCCTGCCCAGGGAACCCATCTCGG...CCTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp GTACCATCCATAGCTCCAACTCATGTGACCAAAGGGAACCACCCAGATGTGGTCAGTCGTCTTGGGACGTaGCCACGTCCTCCACCGGCC +
Preference number: 4 (lower is better)
Translates to: VPSIAPTHVTKGNHPDVVSRLGT*PRPPPA
Trigger: GGCCGGTGGAGGACGTGGCCACGTCCCAAGACGACT...GACCACATCTGGGTGGTTCCCTTTGGTCACATGAGTTGGAGCTATGGATGGTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp AGCCCAAGAACCAGCCTGGGTACCCATGGATTATATTGGGAGGGGCAGCAGAGAGCAAAGTCATCGTGCTaGTGGCGCAGGCAACGCAGG +
Preference number: 4 (lower is better)
Translates to: SPRTSLGTHGLYWEGQQRAKSSC*WRRQRR
Trigger: CCTGCGTTGCCTGCGCCACCAGCACGATGACTTTGC...TCTCTGCTGCCCCTCCCAATATAATCCATGGGTACCCAGGCTGGTTCTTGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp TCTGCTGACTTTGGCCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACGCAAAGTCATCGTGCTaGTGGCGCAGGCAACGCAGG +
Preference number: 4 (lower is better)
Translates to: SADFGQQGMRLALSLPGYAKSSC*WRRQRR
Trigger: CCTGCGTTGCCTGCGCCACCAGCACGATGACTTTGC...GTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGGCCAAAGTCAGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp GTACCATCCATAGCTCCAACTCATGTGACCAAAGGGAACCACCCAGATGTGGTCGTGACGTTGGGGCCATaGGGGATGCTCACCAGGTCG +
Preference number: 4 (lower is better)
Translates to: VPSIAPTHVTKGNHPDVVVTLGP*GMLTRS
Trigger: CGACCTGGTGAGCATCCCTCATGGCCCCAACGTCAC...GACCACATCTGGGTGGTTCCCTTTGGTCACATGAGTTGGAGCTATGGATGGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp TCTGCTGACTTTGGCCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACGGTCGATACCACCAATaGTCATGCTCCCTCCCACCG +
Preference number: 4 (lower is better)
Translates to: SADFGQQGMRLALSLPGYGRYHQ*SCSLPP
Trigger: CGGTGGGAGGGAGCATGATCATTGGTGGTATCGACC...GTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGGCCAAAGTCAGCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp CATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGGCGCAGGCAGCGCCACTaGCATACCATGAGGCAGAGT +
Preference number: 4 (lower is better)
Translates to: HLLPVSILSCLLILTAPRRRQRH*HTMRQS
Trigger: ACTCTGCCTCATGGTATGTCAGTGGCGCTGCCTGCG...CCTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp AGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGTTGGAGTGAACCTATGCTGGGAAGGGGCAGCCGGATaGCGAGATGGGTTCCCTGGG +
Preference number: 4 (lower is better)
Translates to: RTLLSVPFSTLVGVNLCWEGAAG*RDGFPG
Trigger: CCCAGGGAACCCATCTCGGCATCCGGCTGCCCCTTC...CCAGCATAGGTTCACTCCAACCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp GTACCATCCATAGCTCCAACTCATGTGACCAAAGGGAACCACCCAGATGTGGTCTGGGGCCATGAGGGATaGTCACCAGGTCGGTGCCCA +
Preference number: 4 (lower is better)
Translates to: VPSIAPTHVTKGNHPDVVWGHEG*SPGRCP
Trigger: TGGGCACCGACCTGGTGAGCATCCCTCATGGCCCCA...GACCACATCTGGGTGGTTCCCTTTGGTCACATGAGTTGGAGCTATGGATGGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp TCTGCTGACTTTGGCCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACTGCCAGCACACCAGCTaGTCCCCTAGCCAAAAGCCA +
Preference number: 4 (lower is better)
Translates to: SADFGQQGMRLALSLPGYCQHTS*SPSQKP
Trigger: TGGCTTTTGGCTAGGGGAGCAGCTGGTGTGCTGGCA...GTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGGCCAAAGTCAGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp TGGATGAATCTTGAGGGCTCTGCCTTTGTGGATCAGAGAGGAGGACTCTCCTGTCCAAGGGGTCGTGCCTaGTTGCCAGCACACCAGCTG +
Preference number: 4 (lower is better)
Translates to: WMNLEGSAFVDQRGGLSCPRGRA*LPAHQL
Trigger: CAGCTGGTGTGCTGGCAAGCAGGCACGACCCCTTGG...ACAGGAGAGTCCTCCTCTCTGATCCACAAAGGCAGAGCCCTCAAGATTCATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTATGTTCCAAGGGGTCGTaGCTGCTTGCCAGCACACCA +
Preference number: 4 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLCSKGS*LLASTP
Trigger: TGGTGTGCTGGCAAGCAGGCACGACCCCTTGGAACA...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp CATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGGACCACTCCCGCCGGATaGGTGTGTACCAGAGACTGC +
Preference number: 4 (lower is better)
Translates to: HLLPVSILSCLLILTAPRTTPAG*VCTRDC
Trigger: GCAGTCTCTGGTACACACCCATCCGGCGGGAGTGGT...CCTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CAA 72 bp GCTGTCTCTCAGAGCGAGCCCCAGAAAGGCAGCATTTaGGAGAGTGGACCTCCACAGTTGGAGCCTCATCAC +
Preference number: 4 (lower is better)
Translates to: AVSQSEPQKGSI*ESGPPQLEPHH
Trigger: GTGATGAGGCTCCAACTGTGGAGGTCCACTCTCCAAAATGCTGCCTTTCTGGGGCTCGCTCTGAGAGACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR TCA 90 bp AGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGTTGGAGTGAACCTATGCTGGGTGACGTTGGGGCCATaGGGGATGCTCACCAGGTCG +
Preference number: 4 (lower is better)
Translates to: RTLLSVPFSTLVGVNLCWVTLGP*GMLTRS
Trigger: CGACCTGGTGAGCATCCCTCATGGCCCCAACGTCAC...CCAGCATAGGTTCACTCCAACCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp CCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACCACAGGGACACATGGTGATGCGGAAGGACTaGTTGGTGACTTCACCCATG +
Preference number: 4 (lower is better)
Translates to: PAGNEIGPFSARVPQGHMVMRKD*LVTSPM
Trigger: CATGGGTGAAGTCACCAATCAGTCCTTCCGCATCAC...CATGTGTCCCTGTGGTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp TCTGCTGACTTTGGCCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACGCTGAGGAAGGATGGTaGTGCGGAAGGACTGATTGG +
Preference number: 4 (lower is better)
Translates to: SADFGQQGMRLALSLPGYAEEGW*CGRTDW
Trigger: CCAATCAGTCCTTCCGCATCACCATCCTTCCTCAGC...GTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGGCCAAAGTCAGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTAGCTGAGGAAGGATGGTaGTGCGGAAGGACTGATTGG +
Preference number: 4 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLAEEGW*CGRTDW
Trigger: CCAATCAGTCCTTCCGCATCACCATCCTTCCTCAGC...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp GCCTTTGTGGATCAGAGAGGAGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGCGCAGGCAGCGCCACTaGCATACCATGAGGCAGAGT +
Preference number: 4 (lower is better)
Translates to: AFVDQRGGLSCLFLLAPWRRQRH*HTMRQS
Trigger: ACTCTGCCTCATGGTATGTCAGTGGCGCTGCCTGCG...CCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCTCCTCTCTGATCCACAAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp AAGCACAATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACTGCTCACCAGGTCGGTaGCCAGTTCCCCCTCCCACT +
Preference number: 4 (lower is better)
Translates to: KHNSQIFPLGQATIPCCYCSPGR*PVPPPT
Trigger: AGTGGGAGGGGGAACTGGGCACCGACCTGGTGAGCA...GTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATTGTGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR GCA 90 bp AGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGTTGGAGTGAACCTATGCTGGTGGGGCCATGAGGGATaGTCACCAGGTCGGTGCCCA +
Preference number: 4 (lower is better)
Translates to: RTLLSVPFSTLVGVNLCWWGHEG*SPGRCP
Trigger: TGGGCACCGACCTGGTGAGCATCCCTCATGGCCCCA...CCAGCATAGGTTCACTCCAACCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp CATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGGAGGCCAGCCCTAGGATaGCCTCCCAGTTGGAACCAT +
Preference number: 4 (lower is better)
Translates to: HLLPVSILSCLLILTAPRRPALG*PPSWNH
Trigger: ATGGTTCCAACTGGGAGGGCATCCTAGGGCTGGCCT...CCTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp CATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGGTGTTCCAAGGGGTCGTaGCTGCTTGCCAGCACACCA +
Preference number: 4 (lower is better)
Translates to: HLLPVSILSCLLILTAPRCSKGS*LLASTP
Trigger: TGGTGTGCTGGCAAGCAGGCACGACCCCTTGGAACA...CCTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp TCTGCTGACTTTGGCCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACGCAAGCGAAGGTTGGTaGTCCCACTGTCCACAATGC +
Preference number: 4 (lower is better)
Translates to: SADFGQQGMRLALSLPGYASEGW*SHCPQC
Trigger: GCATTGTGGACAGTGGGACCACCAACCTTCGCTTGC...GTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGGCCAAAGTCAGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR CCA 90 bp AATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACTGGTTTAGTCGTCTTGGGACGTaGCCACGTCCTCCACCGGCC +
Preference number: 4 (lower is better)
Translates to: NSQIFPLGQATIPCCYWFSRLGT*PRPPPA
Trigger: GGCCGGTGGAGGACGTGGCCACGTCCCAAGACGACT...AAACCAGTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR TCA 90 bp CATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGGGCACATGGCAAGCGCTaGCAGCAAAGCCAATTCGCT +
Preference number: 4 (lower is better)
Translates to: HLLPVSILSCLLILTAPRAHGKR*QQSQFA
Trigger: AGCGAATTGGCTTTGCTGTCAGCGCTTGCCATGTGC...CCTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp GCCTTTGTGGATCAGAGAGGAGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGAGGCCAGCCCTAGGATaGCCTCCCAGTTGGAACCAT +
Preference number: 4 (lower is better)
Translates to: AFVDQRGGLSCLFLLAPWRPALG*PPSWNH
Trigger: ATGGTTCCAACTGGGAGGGCATCCTAGGGCTGGCCT...CCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCTCCTCTCTGATCCACAAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp GCCTTTGTGGATCAGAGAGGAGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGTGCCAGCACACCAGCTaGTCCCCTAGCCAAAAGCCA +
Preference number: 4 (lower is better)
Translates to: AFVDQRGGLSCLFLLAPWCQHTS*SPSQKP
Trigger: TGGCTTTTGGCTAGGGGAGCAGCTGGTGTGCTGGCA...CCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCTCCTCTCTGATCCACAAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp GCCTTTGTGGATCAGAGAGGAGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGTCAGCAAAGTCATCGTaGTGGTGGCGCAGGCAACGC +
Preference number: 4 (lower is better)
Translates to: AFVDQRGGLSCLFLLAPWSAKSS*WWRRQR
Trigger: GCGTTGCCTGCGCCACCAGCACGATGACTTTGCTGA...CCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCTCCTCTCTGATCCACAAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp GATGAAGGAAGGTGGTACAGTTGTAAGCTATGCTTTGTGGATTCCCATCTGGAGAGCCGGATGCCGAGATaGGTTCCCTGGGCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: DEGRWYSCKLCFVDSHLESRMPR*VPWAGS
Trigger: GCTGCCTGCCCAGGGAACCCATCTCGGCATCCGGCT...CTCCAGATGGGAATCCACAAAGCATAGCTTACAACTGTACCACCTTCCTTCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR CCA 90 bp CCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACCACAGGGACACATGAACTCATCGTGCACATaGCAAGCGCTGACAGCAAAG +
Preference number: 4 (lower is better)
Translates to: PAGNEIGPFSARVPQGHMNSSCT*QALTAK
Trigger: CTTTGCTGTCAGCGCTTGCCATGTGCACGATGAGTT...CATGTGTCCCTGTGGTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTAACTTGTCCGATTCAGTaGTGGCAGCAATGTTGGCAC +
Preference number: 4 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLTCPIQ*WQQCWH
Trigger: GTGCCAACATTGCTGCCATCACTGAATCGGACAAGT...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp AAGCACAATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACTCAGCAAAGTCATCGTaGTGGTGGCGCAGGCAACGC +
Preference number: 4 (lower is better)
Translates to: KHNSQIFPLGQATIPCCYSAKSS*WWRRQR
Trigger: GCGTTGCCTGCGCCACCAGCACGATGACTTTGCTGA...GTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATTGTGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR CCA 90 bp TGGATGAATCTTGAGGGCTCTGCCTTTGTGGATCAGAGAGGAGGACTCTCCTGTAAGAGTCGTCGGGCCTaGCAATCTCAGCATAGGCCA +
Preference number: 4 (lower is better)
Translates to: WMNLEGSAFVDQRGGLSCKSRRA*QSQHRP
Trigger: TGGCCTATGCTGAGATTGCCAGGCCCGACGACTCTT...ACAGGAGAGTCCTCCTCTCTGATCCACAAAGGCAGAGCCCTCAAGATTCATCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp AAGCCTGTAATCATGGCATATGGGAGGTGGACACACAGGAGGGTCAGGAGTTCATGGGCAAGCGAAGGTTaGTGGTCCCACTGTCCACAA +
Preference number: 4 (lower is better)
Translates to: KPVIMAYGRWTHRRVRSSWASEG*WSHCPQ
Trigger: TTGTGGACAGTGGGACCACCAACCTTCGCTTGCCCA...TGAACTCCTGACCCTCCTGTGTGTCCACCTCCCATATGCCATGATTACAGGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR CCA 90 bp CATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGGTACCATGAGGCAGAGTaGCAACATGAAGAGGGCGCA +
Preference number: 4 (lower is better)
Translates to: HLLPVSILSCLLILTAPRYHEAE*QHEEGA
Trigger: TGCGCCCTCTTCATGTTGCCACTCTGCCTCATGGTA...CCTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CAA 72 bp GAGAGGAGGACTCTCCTGTCTGTTCCTTTTAGCACCTaGGTTGGAGTGAACCTATGCTGGGAAGACCATCCC +
Preference number: 4 (lower is better)
Translates to: ERRTLLSVPFST*VGVNLCWEDHP
Trigger: GGGATGGTCTTCCCAGCATAGGTTCACTCCAACCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCTCCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp GTACCATCCATAGCTCCAACTCATGTGACCAAAGGGAACCACCCAGATGTGGTCGTGTGTACCAGAGACTaGCCGTGTATAGCGAGTGGT +
Preference number: 4 (lower is better)
Translates to: VPSIAPTHVTKGNHPDVVVCTRD*PCIASG
Trigger: ACCACTCGCTATACACGGGCAGTCTCTGGTACACAC...GACCACATCTGGGTGGTTCCCTTTGGTCACATGAGTTGGAGCTATGGATGGTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp AGTGAGATGAAGGAAGGTGGTACAGTTGTAAGCTATGCTTTGTGGATTCCCATCCCGAGATGGGTTCCCTaGGCAGGCAGCATTCCCGAG +
Preference number: 4 (lower is better)
Translates to: SEMKEGGTVVSYALWIPIPRWVP*AGSIPE
Trigger: CTCGGGAATGCTGCCTGCCCAGGGAACCCATCTCGG...GATGGGAATCCACAAAGCATAGCTTACAACTGTACCACCTTCCTTCATCTCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR CCA 90 bp AAGCACAATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACAAGAGTCGTCGGGCCTaGCAATCTCAGCATAGGCCA +
Preference number: 4 (lower is better)
Translates to: KHNSQIFPLGQATIPCCYKSRRA*QSQHRP
Trigger: TGGCCTATGCTGAGATTGCCAGGCCCGACGACTCTT...GTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATTGTGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR CCA 90 bp TCTGCTGACTTTGGCCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACGCAGGGAAAAGATGTTaGGAATGTGGGTCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: SADFGQQGMRLALSLPGYAGKRC*ECGSAS
Trigger: TGAAGCAGACCCACATTCCCAACATCTTTTCCCTGC...GTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGGCCAAAGTCAGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp CCATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGAACTCATCGTGCACATaGCAAGCGCTGACAGCAAAG +
Preference number: 4 (lower is better)
Translates to: PSPSCLYPILSPHLDCPQNSSCT*QALTAK
Trigger: CTTTGCTGTCAGCGCTTGCCATGTGCACGATGAGTT...CTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CAA 72 bp CCCATAGGGCACCTAAGACCTTGGGGTTGGGTCATTTaGGTGCCACTTAGCATGTTGAAGAAGCAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: PIGHLRPWGWVI*VPLSMLKKQRE
Trigger: CTCTCTCTGCTTCTTCAACATGCTAAGTGGCACCAAAATGACCCAACCCCAAGGTCTTAGGTGCCCTATGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CAA 72 bp CCAAAGGTTAAGGCAATTGGTTCACCACCAAGTGATTaGGTGACCTTAGGTGAGCTCCAGACAGGCACTGGG +
Preference number: 4 (lower is better)
Translates to: PKVKAIGSPPSD*VTLGELQTGTG
Trigger: CCCAGTGCCTGTCTGGAGCTCACCTAAGGTCACCAAATCACTTGGTGGTGAACCAATTGCCTTAACCTTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR GCA 90 bp AAGCCTGTAATCATGGCATATGGGAGGTGGACACACAGGAGGGTCAGGAGTTCAACAGTCTTCCATGTCTaGCGTAACAAACGGACCTTC +
Preference number: 4 (lower is better)
Translates to: KPVIMAYGRWTHRRVRSSTVFHV*RNKRTF
Trigger: GAAGGTCCGTTTGTTACGGCAGACATGGAAGACTGT...TGAACTCCTGACCCTCCTGTGTGTCCACCTCCCATATGCCATGATTACAGGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR GCA 90 bp GTACCATCCATAGCTCCAACTCATGTGACCAAAGGGAACCACCCAGATGTGGTCACAGTCTTCCATGTCTaGCGTAACAAACGGACCTTC +
Preference number: 4 (lower is better)
Translates to: VPSIAPTHVTKGNHPDVVTVFHV*RNKRTF
Trigger: GAAGGTCCGTTTGTTACGGCAGACATGGAAGACTGT...GACCACATCTGGGTGGTTCCCTTTGGTCACATGAGTTGGAGCTATGGATGGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp GTACCATCCATAGCTCCAACTCATGTGACCAAAGGGAACCACCCAGATGTGGTCGCAGGGAAAAGATGTTaGGAATGTGGGTCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: VPSIAPTHVTKGNHPDVVAGKRC*ECGSAS
Trigger: TGAAGCAGACCCACATTCCCAACATCTTTTCCCTGC...GACCACATCTGGGTGGTTCCCTTTGGTCACATGAGTTGGAGCTATGGATGGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp AGAGACAGAATTAACAAGATAGGAATTCATCTGTCCAGTGGGACTTTTCTCATGGCCAGTGCCTCGGTCTaGTTGAGGGGGAAGCCAGCG +
Preference number: 4 (lower is better)
Translates to: RDRINKIGIHLSSGTFLMASASV*LRGKPA
Trigger: CGCTGGCTTCCCCCTCAACCAGACCGAGGCACTGGC...CATGAGAAAAGTCCCACTGGACAGATGAATTCCTATCTTGTTAATTCTGTCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CAA 72 bp CTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTaGACTGCCCCCAGGAGTATAAACATTCGCATCGCA +
Preference number: 4 (lower is better)
Translates to: LLPVSILSCLLI*TAPRSINIRIA
Trigger: TGCGATGCGAATGTTTATACTCCTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp TCTGCTGACTTTGGCCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACACCCATGAGGTAAAGTaGAATGACTGGGAAAATGTT +
Preference number: 4 (lower is better)
Translates to: SADFGQQGMRLALSLPGYTHEVK*NDWENV
Trigger: AACATTTTCCCAGTCATTTCACTTTACCTCATGGGT...GTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGGCCAAAGTCAGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp GATGAAGGAAGGTGGTACAGTTGTAAGCTATGCTTTGTGGATTCCCATCTGGAGGTGATGCGGAAGGACTaGTTGGTGACTTCACCCATG +
Preference number: 4 (lower is better)
Translates to: DEGRWYSCKLCFVDSHLEVMRKD*LVTSPM
Trigger: CATGGGTGAAGTCACCAATCAGTCCTTCCGCATCAC...CTCCAGATGGGAATCCACAAAGCATAGCTTACAACTGTACCACCTTCCTTCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR TCA 90 bp CATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGGTATGGTCATAAGTGTTaGCTCATCTGTCTGGGGAAT +
Preference number: 4 (lower is better)
Translates to: HLLPVSILSCLLILTAPRYGHKC*LICLGN
Trigger: ATTCCCCAGACAGATGAGTCAACACTTATGACCATA...CCTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp CCATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGTATGGTCATAAGTGTTaGCTCATCTGTCTGGGGAAT +
Preference number: 4 (lower is better)
Translates to: PSPSCLYPILSPHLDCPQYGHKC*LICLGN
Trigger: ATTCCCCAGACAGATGAGTCAACACTTATGACCATA...CTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp AGAGACAGAATTAACAAGATAGGAATTCATCTGTCCAGTGGGACTTTTCTCATGGGCAGAGTGGCAACATaGAGAGGGCGCAGATGGCCG +
Preference number: 4 (lower is better)
Translates to: RDRINKIGIHLSSGTFLMGRVAT*RGRRWP
Trigger: CGGCCATCTGCGCCCTCTTCATGTTGCCACTCTGCC...CATGAGAAAAGTCCCACTGGACAGATGAATTCCTATCTTGTTAATTCTGTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp AATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACTGGTTTCTGCAAAGTTACTACTaGCCGTGTCCACCAGGATGT +
Preference number: 4 (lower is better)
Translates to: NSQIFPLGQATIPCCYWFLQSYY*PCPPGC
Trigger: ACATCCTGGTGGACACGGGCAGTAGTAACTTTGCAG...AAACCAGTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR TCA 90 bp AGAGACAGAATTAACAAGATAGGAATTCATCTGTCCAGTGGGACTTTTCTCATGTGTTGGCACGCACAGTaGCGTTGGGGCCATGAGGGA +
Preference number: 4 (lower is better)
Translates to: RDRINKIGIHLSSGTFLMCWHAQ*RWGHEG
Trigger: TCCCTCATGGCCCCAACGTCACTGTGCGTGCCAACA...CATGAGAAAAGTCCCACTGGACAGATGAATTCCTATCTTGTTAATTCTGTCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp AAGCACAATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACCTTCAAATACTTTCTTaGGCAAGCGAAGGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: KHNSQIFPLGQATIPCCYLQILS*ASEGWW
Trigger: CCACCAACCTTCGCTTGCCCAAGAAAGTATTTGAAG...GTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATTGTGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR TCA 90 bp AGAGACAGAATTAACAAGATAGGAATTCATCTGTCCAGTGGGACTTTTCTCATGGGTCGATACCACCAATaGTCATGCTCCCTCCCACCG +
Preference number: 4 (lower is better)
Translates to: RDRINKIGIHLSSGTFLMGRYHQ*SCSLPP
Trigger: CGGTGGGAGGGAGCATGATCATTGGTGGTATCGACC...CATGAGAAAAGTCCCACTGGACAGATGAATTCCTATCTTGTTAATTCTGTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp AGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGTTGGAGTGAACCTATGCTGGTCCATCTTGAGATCTTaGCCATTGATTTCCACACGT +
Preference number: 4 (lower is better)
Translates to: RTLLSVPFSTLVGVNLCWSILRS*PLISTR
Trigger: ACGTGTGGAAATCAATGGTCAAGATCTCAAGATGGA...CCAGCATAGGTTCACTCCAACCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CCA 90 bp AGAGACAGAATTAACAAGATAGGAATTCATCTGTCCAGTGGGACTTTTCTCATGATGCAGGAAAGGGTGTaGGGCAGCCCCCACTGCAAA +
Preference number: 4 (lower is better)
Translates to: RDRINKIGIHLSSGTFLMMQERV*GSPHCK
Trigger: TTTGCAGTGGGGGCTGCCCCACACCCTTTCCTGCAT...CATGAGAAAAGTCCCACTGGACAGATGAATTCCTATCTTGTTAATTCTGTCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR TCA 90 bp AGAGACAGAATTAACAAGATAGGAATTCATCTGTCCAGTGGGACTTTTCTCATGGCACATGGCAAGCGCTaGCAGCAAAGCCAATTCGCT +
Preference number: 4 (lower is better)
Translates to: RDRINKIGIHLSSGTFLMAHGKR*QQSQFA
Trigger: AGCGAATTGGCTTTGCTGTCAGCGCTTGCCATGTGC...CATGAGAAAAGTCCCACTGGACAGATGAATTCCTATCTTGTTAATTCTGTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR GCA 90 bp ATGGATGAATTCTTTTCTCTTGCCTTATTGTCCAGGTTGATTGATAAGCATGATCCATCTCCACAAAGCTaGCTCTCCGGCCAGGCTCCT +
Preference number: 4 (lower is better)
Translates to: MDEFFSLALLSRLIDKHDPSPQS*LSGQAP
Trigger: AGGAGCCTGGCCGGAGAGGCAGCTTTGTGGAGATGG...ATCATGCTTATCAATCAACCTGGACAATAAGGCAAGAGAAAAGAATTCATCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR GCA 90 bp AGTGAGATGAAGGAAGGTGGTACAGTTGTAAGCTATGCTTTGTGGATTCCCATCTCCCACTGTCCACAATaGTCTTGTCGTAGTTGTACT +
Preference number: 4 (lower is better)
Translates to: SEMKEGGTVVSYALWIPISHCPQ*SCRSCT
Trigger: AGTACAACTACGACAAGAGCATTGTGGACAGTGGGA...GATGGGAATCCACAAAGCATAGCTTACAACTGTACCACCTTCCTTCATCTCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR CCA 90 bp AGAGACAGAATTAACAAGATAGGAATTCATCTGTCCAGTGGGACTTTTCTCATGTACCATGAGGCAGAGTaGCAACATGAAGAGGGCGCA +
Preference number: 4 (lower is better)
Translates to: RDRINKIGIHLSSGTFLMYHEAE*QHEEGA
Trigger: TGCGCCCTCTTCATGTTGCCACTCTGCCTCATGGTA...CATGAGAAAAGTCCCACTGGACAGATGAATTCCTATCTTGTTAATTCTGTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CAA 72 bp ATTGATGTTTTCCCATCCTGGGACTGGGGGTGCTTATaGAGTCTAGCAGTTTCTGTTAGGATAGCAAAGACT +
Preference number: 4 (lower is better)
Translates to: IDVFPSWDWGCL*SLAVSVRIAKT
Trigger: AGTCTTTGCTATCCTAACAGAAACTGCTAGACTCAATAAGCACCCCCAGTCCCAGGATGGGAAAACATCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
3UTR CAA 72 bp TATGCTTTGTGGATTCCCATCTGGAGGAAGATAGGTTaGCCACCGCCACTTACTGAGTTCTTCTGGTTTTTA +
Preference number: 4 (lower is better)
Translates to: YALWIPIWRKIG*PPPLTEFFWFL
Trigger: TAAAAACCAGAAGAACTCAGTAAGTGGCGGTGGCAAACCTATCTTCCTCCAGATGGGAATCCACAAAGCATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR GCA 90 bp ATGGATGAATTCTTTTCTCTTGCCTTATTGTCCAGGTTGATTGATAAGCATGATGTGTGTACCAGAGACTaGCCGTGTATAGCGAGTGGT +
Preference number: 4 (lower is better)
Translates to: MDEFFSLALLSRLIDKHDVCTRD*PCIASG
Trigger: ACCACTCGCTATACACGGGCAGTCTCTGGTACACAC...ATCATGCTTATCAATCAACCTGGACAATAAGGCAAGAGAAAAGAATTCATCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR TCA 90 bp AGAGACAGAATTAACAAGATAGGAATTCATCTGTCCAGTGGGACTTTTCTCATGACCCATGAGGTAAAGTaGAATGACTGGGAAAATGTT +
Preference number: 4 (lower is better)
Translates to: RDRINKIGIHLSSGTFLMTHEVK*NDWENV
Trigger: AACATTTTCCCAGTCATTTCACTTTACCTCATGGGT...CATGAGAAAAGTCCCACTGGACAGATGAATTCCTATCTTGTTAATTCTGTCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
3UTR CAA 72 bp TGGTTAATGAAGTACTTCTGTCTTCTTGTCTCCAGTTaGGTACTACTTGAACAGAAAAAGGTGGCAAAATGG +
Preference number: 4 (lower is better)
Translates to: WLMKYFCLLVSS*VLLEQKKVAKW
Trigger: CCATTTTGCCACCTTTTTCTGTTCAAGTAGTACCAAACTGGAGACAAGAAGACAGAAGTACTTCATTAACCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS GCA 90 bp GGCCCAGGGGTGGCCCTGCCAGGCCGCTGCGAAGGGGCAGCCGGATaGCGAGATGGGTTCCCTGGGCAGGCAGCATTCCCGAGCCCACCC +
Preference number: 5 (lower is better)
Translates to: GPGVALPGRCEGAAG*RDGFPGQAAFPSPP
Trigger: GGGTGGGCTCGGGAATGCTGCCTGCCCAGGGAACCCATCTCGGCATCCGGCTGCCCCTTCGCAGCGGCCTGGCAGGGCCACCCCTGGGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS CCA 90 bp GGTGGCCCTGCCAGGCCGCTGCGAAGGGGCAGCCGGATGCCGAGATaGGTTCCCTGGGCAGGCAGCATTCCCGAGCCCACCCATAGCAGG +
Preference number: 5 (lower is better)
Translates to: GGPARPLRRGSRMPR*VPWAGSIPEPTHSR
Trigger: CCTGCTATGGGTGGGCTCGGGAATGCTGCCTGCCCAGGGAACCCATCTCGGCATCCGGCTGCCCCTTCGCAGCGGCCTGGCAGGGCCACC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS GCA 90 bp GTGGTCGATACCACCAATGATCATGCTCCCTCCCACCGAGGCCAGTaGCTCGGTCTGGTTGAGGGGGAAGCCAGCGCCACAGAGCCTGGC +
Preference number: 5 (lower is better)
Translates to: VVDTTNDHAPSHRGQ*LGLVEGEASATEPG
Trigger: GCCAGGCTCTGTGGCGCTGGCTTCCCCCTCAACCAGACCGAGGCACTGGCCTCGGTGGGAGGGAGCATGATCATTGGTGGTATCGACCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162587.2
CDS CCA 90 bp CCACCAATGATCATGCTCCCTCCCACCGAGGCCAGTGCCTCGGTCTaGTTGAGGGGGAAGCCAGCGCCACAGAGCCTGGCAATCTCAGCA +
Preference number: 5 (lower is better)
Translates to: PPMIMLPPTEASASV*LRGKPAPQSLAISA
Trigger: TGCTGAGATTGCCAGGCTCTGTGGCGCTGGCTTCCCCCTCAACCAGACCGAGGCACTGGCCTCGGTGGGAGGGAGCATGATCATTGGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162587.2
CDS GCA 90 bp CATGAGGGATGCTCACCAGGTCGGTGCCCAGTTCCCCCTCCCACTTaGCCTGGGTGTAGGGCACATACACACCCTTTCGGAGGTCTCGAT +
Preference number: 5 (lower is better)
Translates to: HEGCSPGRCPVPPPT*PGCRAHTHPFGGLD
Trigger: ATCGAGACCTCCGAAAGGGTGTGTATGTGCCCTACACCCAGGGCAAGTGGGAGGGGGAACTGGGCACCGACCTGGTGAGCATCCCTCATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS TCA 90 bp GCAAAGTCATCGTGCTGGTGGCGCAGGCAACGCAGGCAGCGCCACTaGCATACCATGAGGCAGAGTGGCAACATGAAGAGGGCGCAGATG +
Preference number: 5 (lower is better)
Translates to: AKSSCWWRRQRRQRH*HTMRQSGNMKRAQM
Trigger: CATCTGCGCCCTCTTCATGTTGCCACTCTGCCTCATGGTATGTCAGTGGCGCTGCCTGCGTTGCCTGCGCCACCAGCACGATGACTTTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS CCA 90 bp TGTGCTGGACAGCTGCCTCTGGTAGTAGCGATGCAGGAAAGGGTGTaGGGCAGCCCCCACTGCAAAGTTACTACTGCCCGTGTCCACCAG +
Preference number: 5 (lower is better)
Translates to: CAGQLPLVVAMQERV*GSPHCKVTTARVHQ
Trigger: CTGGTGGACACGGGCAGTAGTAACTTTGCAGTGGGGGCTGCCCCACACCCTTTCCTGCATCGCTACTACCAGAGGCAGCTGTCCAGCACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000159499.2
CDS CCA 90 bp TCCCGCCGGATGGGTGTGTACCAGAGACTGCCCGTGTATAGCGAGTaGTCGATACCACCAATGATCATGCTCCCTCCCACCGAGGCCAGT +
Preference number: 5 (lower is better)
Translates to: SRRMGVYQRLPVYSE*SIPPMIMLPPTEAS
Trigger: ACTGGCCTCGGTGGGAGGGAGCATGATCATTGGTGGTATCGACCACTCGCTATACACGGGCAGTCTCTGGTACACACCCATCCGGCGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS CCA 90 bp GCGCAGGCAACGCAGGCAGCGCCACTGACATACCATGAGGCAGAGTaGCAACATGAAGAGGGCGCAGATGGCCGCCATGACATAGGCTAT +
Preference number: 5 (lower is better)
Translates to: AQATQAAPLTYHEAE*QHEEGADGRHDIGY
Trigger: ATAGCCTATGTCATGGCGGCCATCTGCGCCCTCTTCATGTTGCCACTCTGCCTCATGGTATGTCAGTGGCGCTGCCTGCGTTGCCTGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS CCA 90 bp GGGCTCCAAAGAGTCGTCGGGCCTTTCGGAGGTCTCGATATGTGCTaGACAGCTGCCTCTGGTAGTAGCGATGCAGGAAAGGGTGTGGGG +
Preference number: 5 (lower is better)
Translates to: GLQRVVGPFGGLDMC*TAASGSSDAGKGVG
Trigger: CCCCACACCCTTTCCTGCATCGCTACTACCAGAGGCAGCTGTCCAGCACATATCGAGACCTCCGAAAGGCCCGACGACTCTTTGGAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159499.2
CDS-3UTR CAA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTAAGTGCCTCGGTCTGGTaGAGGGGGAAGCCAGCGCCA +
Preference number: 5 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLSASVW*RGKPAP
Trigger: TGGCGCTGGCTTCCCCCTCAACCAGACCGAGGCACT...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS GCA 90 bp CCTCTGGTAGTAGCGATGCAGGAAAGGGTGTGGGGCAGCCCCCACTaGAAAGTTACTACTGCCCGTGTCCACCAGGATGTTGAGCGTCTG +
Preference number: 5 (lower is better)
Translates to: PLVVAMQERVWGSPH*KVTTARVHQDVERL
Trigger: CAGACGCTCAACATCCTGGTGGACACGGGCAGTAGTAACTTTGCAGTGGGGGCTGCCCCACACCCTTTCCTGCATCGCTACTACCAGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000159499.2
CDS GCA 90 bp GTAGCCACAGTCTTCCATGTCTGCCGTAACAAACGGACCTTCCACTaGCGCCGTCCTGAACTCATCGTGCACATGGCAAGCGCTGACAGC +
Preference number: 5 (lower is better)
Translates to: VATVFHVCRNKRTFH*RRPELIVHMASADS
Trigger: GCTGTCAGCGCTTGCCATGTGCACGATGAGTTCAGGACGGCGGCAGTGGAAGGTCCGTTTGTTACGGCAGACATGGAAGACTGTGGCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS GCA 90 bp GAAGGGCTCCAAAGAGTCGTCGGGCCTTTCGGAGGTCTCGATATGTaGTGGACAGCTGCCTCTGGTAGTAGCGATGCAGGAAAGGGTGTG +
Preference number: 5 (lower is better)
Translates to: EGLQRVVGPFGGLDM*WTAASGSSDAGKGV
Trigger: CACACCCTTTCCTGCATCGCTACTACCAGAGGCAGCTGTCCAGCACATATCGAGACCTCCGAAAGGCCCGACGACTCTTTGGAGCCCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159499.2
CDS-3UTR CAA 90 bp TCTGCTGACTTTGGCCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACGTCGAGGAGGCTGCCTaGATGGACTTGACGGCAGCT +
Preference number: 5 (lower is better)
Translates to: SADFGQQGMRLALSLPGYVEEAA*MDLTAA
Trigger: AGCTGCCGTCAAGTCCATCAAGGCAGCCTCCTCGAC...GTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGGCCAAAGTCAGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR CAA 90 bp TGGATGAATCTTGAGGGCTCTGCCTTTGTGGATCAGAGAGGAGGACTCTCCTGTAGGGGTCGTGCCTGCTaGCCAGCACACCAGCTGCTC +
Preference number: 5 (lower is better)
Translates to: WMNLEGSAFVDQRGGLSCRGRAC*PAHQLL
Trigger: GAGCAGCTGGTGTGCTGGCAAGCAGGCACGACCCCT...ACAGGAGAGTCCTCCTCTCTGATCCACAAAGGCAGAGCCCTCAAGATTCATCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS CCA 90 bp TGGATGACTGTGAGACAGCGAACTTGTAACAGTCGTCTTGGGACGTaGCCACGTCCTCCACCGGCCGTAGGTATTGCTGAGGAAGGATGG +
Preference number: 5 (lower is better)
Translates to: WMTVRQRTCNSRLGT*PRPPPAVGIAEEGW
Trigger: CCATCCTTCCTCAGCAATACCTACGGCCGGTGGAGGACGTGGCCACGTCCCAAGACGACTGTTACAAGTTCGCTGTCTCACAGTCATCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS-3UTR CAA 90 bp AGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGTTGGAGTGAACCTATGCTGGAGGGGTCGTGCCTGCTaGCCAGCACACCAGCTGCTC +
Preference number: 5 (lower is better)
Translates to: RTLLSVPFSTLVGVNLCWRGRAC*PAHQLL
Trigger: GAGCAGCTGGTGTGCTGGCAAGCAGGCACGACCCCT...CCAGCATAGGTTCACTCCAACCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CAA 90 bp GTGGACACACAGGAGGGTCAGGAGTTCAAGGCTAGCCTGAGCTACATGAGACCACTTGTAACAGTCGTCTaGGGACGTGGCCACGTCCTC +
Preference number: 5 (lower is better)
Translates to: VDTQEGQEFKASLSYMRPLVTVV*GRGHVL
Trigger: GAGGACGTGGCCACGTCCCAAGACGACTGTTACAAG...TGGTCTCATGTAGCTCAGGCTAGCCTTGAACTCCTGACCCTCCTGTGTGTCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR CAA 90 bp TCTGCTGACTTTGGCCAGCAGGGAATGAGATTGGCCCTTTCTCTGCCAGGGTACGTGATGGCAGCAATGTaGGCACGCACAGTGACGTTG +
Preference number: 5 (lower is better)
Translates to: SADFGQQGMRLALSLPGYVMAAM*ARTVTL
Trigger: CAACGTCACTGTGCGTGCCAACATTGCTGCCATCAC...GTACCCTGGCAGAGAAAGGGCCAATCTCATTCCCTGCTGGCCAAAGTCAGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CAA 90 bp AATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACTGGTTTAGTGCCTCGGTCTGGTaGAGGGGGAAGCCAGCGCCA +
Preference number: 5 (lower is better)
Translates to: NSQIFPLGQATIPCCYWFSASVW*RGKPAP
Trigger: TGGCGCTGGCTTCCCCCTCAACCAGACCGAGGCACT...AAACCAGTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR CAA 90 bp GTGGACACACAGGAGGGTCAGGAGTTCAAGGCTAGCCTGAGCTACATGAGACCAGACTTTCCCCTCAGGTaGTCCACCATCTCCACAAAG +
Preference number: 5 (lower is better)
Translates to: VDTQEGQEFKASLSYMRPDFPLR*STISTK
Trigger: CTTTGTGGAGATGGTGGACAACCTGAGGGGAAAGTC...TGGTCTCATGTAGCTCAGGCTAGCCTTGAACTCCTGACCCTCCTGTGTGTCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR CAA 90 bp TGGATGAATCTTGAGGGCTCTGCCTTTGTGGATCAGAGAGGAGGACTCTCCTGTGTGATGGCAGCAATGTaGGCACGCACAGTGACGTTG +
Preference number: 5 (lower is better)
Translates to: WMNLEGSAFVDQRGGLSCVMAAM*ARTVTL
Trigger: CAACGTCACTGTGCGTGCCAACATTGCTGCCATCAC...ACAGGAGAGTCCTCCTCTCTGATCCACAAAGGCAGAGCCCTCAAGATTCATCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CAA 90 bp CAGTGCGAGGGCAAGGAAGAGGACCCAGCTGGAAACTGTGACGCAGGATTCTTAAGGATGCCCTCCCAGTaGGAACCATTGATGAAGAAC +
Preference number: 5 (lower is better)
Translates to: QCEGKEEDPAGNCDAGFLRMPSQ*EPLMKN
Trigger: GTTCTTCATCAATGGTTCCAACTGGGAGGGCATCCT...TAAGAATCCTGCGTCACAGTTTCCAGCTGGGTCCTCTTCCTTGCCCTCGCACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CAA 90 bp AGCCCAAGAACCAGCCTGGGTACCCATGGATTATATTGGGAGGGGCAGCAGAGAGCTGCCTTGATGGACTaGACGGCAGCTTCAAATACT +
Preference number: 5 (lower is better)
Translates to: SPRTSLGTHGLYWEGQQRAALMD*TAASNT
Trigger: AGTATTTGAAGCTGCCGTCAAGTCCATCAAGGCAGC...TCTCTGCTGCCCCTCCCAATATAATCCATGGGTACCCAGGCTGGTTCTTGGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR CAA 90 bp AGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGTTGGAGTGAACCTATGCTGGCTTGTAACAGTCGTCTaGGGACGTGGCCACGTCCTC +
Preference number: 5 (lower is better)
Translates to: RTLLSVPFSTLVGVNLCWLVTVV*GRGHVL
Trigger: GAGGACGTGGCCACGTCCCAAGACGACTGTTACAAG...CCAGCATAGGTTCACTCCAACCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS TCA 90 bp GAGGGCGCAGATGGCCGCCATGACATAGGCTATGGTCATAAGTGTTaGCTCATCTGTCTGGGGAATGTTGTAGCCACAGTCTTCCATGTC +
Preference number: 5 (lower is better)
Translates to: EGADGRHDIGYGHKC*LICLGNVVATVFHV
Trigger: GACATGGAAGACTGTGGCTACAACATTCCCCAGACAGATGAGTCAACACTTATGACCATAGCCTATGTCATGGCGGCCATCTGCGCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS-3UTR CAA 90 bp GTACCATCCATAGCTCCAACTCATGTGACCAAAGGGAACCACCCAGATGTGGTCGACTTTCCCCTCAGGTaGTCCACCATCTCCACAAAG +
Preference number: 5 (lower is better)
Translates to: VPSIAPTHVTKGNHPDVVDFPLR*STISTK
Trigger: CTTTGTGGAGATGGTGGACAACCTGAGGGGAAAGTC...GACCACATCTGGGTGGTTCCCTTTGGTCACATGAGTTGGAGCTATGGATGGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CAA 90 bp AATTCACAGATTTTTCCCCTGGGCCAAGCCACCATCCCTTGTTGCTACTGGTTTTTGGGCAAGCGAAGGTaGGTGGTCCCACTGTCCACA +
Preference number: 5 (lower is better)
Translates to: NSQIFPLGQATIPCCYWFLGKRR*VVPLST
Trigger: TGTGGACAGTGGGACCACCAACCTTCGCTTGCCCAA...AAACCAGTAGCAACAAGGGATGGTGGCTTGGCCCAGGGGAAAAATCTGTGAATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS TCA 90 bp GGTGATGCGGAAGGACTGATTGGTGACTTCACCCATGAGGTAAAGTaGAATGACTGGGAAAATGTTCCAAGGGGTCGTGCCTGCTTGCCA +
Preference number: 5 (lower is better)
Translates to: GDAEGLIGDFTHEVK*NDWENVPRGRACLP
Trigger: TGGCAAGCAGGCACGACCCCTTGGAACATTTTCCCAGTCATTTCACTTTACCTCATGGGTGAAGTCACCAATCAGTCCTTCCGCATCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS-3UTR CAA 90 bp CATCTCCTTCCTGTCTCTATCCTATCCTGTCTCCTCATCTTGACTGCCCCCAGGCCATTGATGAAGAACTaGTCCGATTCAGTGATGGCA +
Preference number: 5 (lower is better)
Translates to: HLLPVSILSCLLILTAPRPLMKN*SDSVMA
Trigger: TGCCATCACTGAATCGGACAAGTTCTTCATCAATGG...CCTGGGGGCAGTCAAGATGAGGAGACAGGATAGGATAGAGACAGGAAGGAGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CAA 90 bp GCCTTTGTGGATCAGAGAGGAGGACTCTCCTGTCTGTTCCTTTTAGCACCTTGGGCTTCAAATACTTTCTaGGGCAAGCGAAGGTTGGTG +
Preference number: 5 (lower is better)
Translates to: AFVDQRGGLSCLFLLAPWASNTF*GKRRLV
Trigger: CACCAACCTTCGCTTGCCCAAGAAAGTATTTGAAGC...CCAAGGTGCTAAAAGGAACAGACAGGAGAGTCCTCCTCTCTGATCCACAAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS-3UTR CAA 90 bp TGGATGAATCTTGAGGGCTCTGCCTTTGTGGATCAGAGAGGAGGACTCTCCTGTTCCCAGTTGGAACCATaGATGAAGAACTTGTCCGAT +
Preference number: 5 (lower is better)
Translates to: WMNLEGSAFVDQRGGLSCSQLEP*MKNLSD
Trigger: ATCGGACAAGTTCTTCATCAATGGTTCCAACTGGGA...ACAGGAGAGTCCTCCTCTCTGATCCACAAAGGCAGAGCCCTCAAGATTCATCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CAA 90 bp AGAGACAGAATTAACAAGATAGGAATTCATCTGTCCAGTGGGACTTTTCTCATGTCCCAGTTGGAACCATaGATGAAGAACTTGTCCGAT +
Preference number: 5 (lower is better)
Translates to: RDRINKIGIHLSSGTFLMSQLEP*MKNLSD
Trigger: ATCGGACAAGTTCTTCATCAATGGTTCCAACTGGGA...CATGAGAAAAGTCCCACTGGACAGATGAATTCCTATCTTGTTAATTCTGTCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS-3UTR CAA 90 bp ATGGATGAATTCTTTTCTCTTGCCTTATTGTCCAGGTTGATTGATAAGCATGATAGGATGCCCTCCCAGTaGGAACCATTGATGAAGAAC +
Preference number: 5 (lower is better)
Translates to: MDEFFSLALLSRLIDKHDRMPSQ*EPLMKN
Trigger: GTTCTTCATCAATGGTTCCAACTGGGAGGGCATCCT...ATCATGCTTATCAATCAACCTGGACAATAAGGCAAGAGAAAAGAATTCATCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034591.11
CDS GCA 72 bp GTGGCCCTGCCAGGCCGCTGCGAAGGGGCAGCCGGATaGCGAGATGGGTTCCCTGGGCAGGCAGCATTCCCG +
Preference number: 6 (lower is better)
Translates to: VALPGRCEGAAG*RDGFPGQAAFP
Trigger: CGGGAATGCTGCCTGCCCAGGGAACCCATCTCGGCATCCGGCTGCCCCTTCGCAGCGGCCTGGCAGGGCCAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS CCA 72 bp GCCAGGCCGCTGCGAAGGGGCAGCCGGATGCCGAGATaGGTTCCCTGGGCAGGCAGCATTCCCGAGCCCACC +
Preference number: 6 (lower is better)
Translates to: ARPLRRGSRMPR*VPWAGSIPEPT
Trigger: GGTGGGCTCGGGAATGCTGCCTGCCCAGGGAACCCATCTCGGCATCCGGCTGCCCCTTCGCAGCGGCCTGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS CCA 72 bp CTGCGAAGGGGCAGCCGGATGCCGAGATGGGTTCCCTaGGCAGGCAGCATTCCCGAGCCCACCCATAGCAGG +
Preference number: 6 (lower is better)
Translates to: LRRGSRMPRWVP*AGSIPEPTHSR
Trigger: CCTGCTATGGGTGGGCTCGGGAATGCTGCCTGCCCAGGGAACCCATCTCGGCATCCGGCTGCCCCTTCGCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
CDS CCA 72 bp ATCATGCTCCCTCCCACCGAGGCCAGTGCCTCGGTCTaGTTGAGGGGGAAGCCAGCGCCACAGAGCCTGGCA +
Preference number: 6 (lower is better)
Translates to: IMLPPTEASASV*LRGKPAPQSLA
Trigger: TGCCAGGCTCTGTGGCGCTGGCTTCCCCCTCAACCAGACCGAGGCACTGGCCTCGGTGGGAGGGAGCATGAT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162587.2
CDS CAA 72 bp ATGCTCCCTCCCACCGAGGCCAGTGCCTCGGTCTGGTaGAGGGGGAAGCCAGCGCCACAGAGCCTGGCAATC +
Preference number: 6 (lower is better)
Translates to: MLPPTEASASVW*RGKPAPQSLAI
Trigger: GATTGCCAGGCTCTGTGGCGCTGGCTTCCCCCTCAACCAGACCGAGGCACTGGCCTCGGTGGGAGGGAGCAT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162587.2
CDS TCA 72 bp GCAGCAATGTTGGCACGCACAGTGACGTTGGGGCCATaGGGGATGCTCACCAGGTCGGTGCCCAGTTCCCCC +
Preference number: 6 (lower is better)
Translates to: AAMLARTVTLGP*GMLTRSVPSSP
Trigger: GGGGGAACTGGGCACCGACCTGGTGAGCATCCCTCATGGCCCCAACGTCACTGTGCGTGCCAACATTGCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS GCA 72 bp TGCTCACCAGGTCGGTGCCCAGTTCCCCCTCCCACTTaGCCTGGGTGTAGGGCACATACACACCCTTTCGGA +
Preference number: 6 (lower is better)
Translates to: CSPGRCPVPPPT*PGCRAHTHPFG
Trigger: TCCGAAAGGGTGTGTATGTGCCCTACACCCAGGGCAAGTGGGAGGGGGAACTGGGCACCGACCTGGTGAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS TCA 72 bp TCGTGCTGGTGGCGCAGGCAACGCAGGCAGCGCCACTaGCATACCATGAGGCAGAGTGGCAACATGAAGAGG +
Preference number: 6 (lower is better)
Translates to: SCWWRRQRRQRH*HTMRQSGNMKR
Trigger: CCTCTTCATGTTGCCACTCTGCCTCATGGTATGTCAGTGGCGCTGCCTGCGTTGCCTGCGCCACCAGCACGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS CCA 72 bp ACGCAGGCAGCGCCACTGACATACCATGAGGCAGAGTaGCAACATGAAGAGGGCGCAGATGGCCGCCATGAC +
Preference number: 6 (lower is better)
Translates to: TQAAPLTYHEAE*QHEEGADGRHD
Trigger: GTCATGGCGGCCATCTGCGCCCTCTTCATGTTGCCACTCTGCCTCATGGTATGTCAGTGGCGCTGCCTGCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS CCA 72 bp CAGCTGCCTCTGGTAGTAGCGATGCAGGAAAGGGTGTaGGGCAGCCCCCACTGCAAAGTTACTACTGCCCGT +
Preference number: 6 (lower is better)
Translates to: QLPLVVAMQERV*GSPHCKVTTAR
Trigger: ACGGGCAGTAGTAACTTTGCAGTGGGGGCTGCCCCACACCCTTTCCTGCATCGCTACTACCAGAGGCAGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000159499.2
CDS GCA 72 bp GTAGCGATGCAGGAAAGGGTGTGGGGCAGCCCCCACTaGAAAGTTACTACTGCCCGTGTCCACCAGGATGTT +
Preference number: 6 (lower is better)
Translates to: VAMQERVWGSPH*KVTTARVHQDV
Trigger: AACATCCTGGTGGACACGGGCAGTAGTAACTTTGCAGTGGGGGCTGCCCCACACCCTTTCCTGCATCGCTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000159499.2
CDS CCA 72 bp GTGAGACAGCGAACTTGTAACAGTCGTCTTGGGACGTaGCCACGTCCTCCACCGGCCGTAGGTATTGCTGAG +
Preference number: 6 (lower is better)
Translates to: VRQRTCNSRLGT*PRPPPAVGIAE
Trigger: CTCAGCAATACCTACGGCCGGTGGAGGACGTGGCCACGTCCCAAGACGACTGTTACAAGTTCGCTGTCTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS CCA 72 bp CCTTCCACTGCCGCCGTCCTGAACTCATCGTGCACATaGCAAGCGCTGACAGCAAAGCCAATTCGCTTTCGG +
Preference number: 6 (lower is better)
Translates to: PSTAAVLNSSCT*QALTAKPIRFR
Trigger: CCGAAAGCGAATTGGCTTTGCTGTCAGCGCTTGCCATGTGCACGATGAGTTCAGGACGGCGGCAGTGGAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS GCA 72 bp GTCTTCCATGTCTGCCGTAACAAACGGACCTTCCACTaGCGCCGTCCTGAACTCATCGTGCACATGGCAAGC +
Preference number: 6 (lower is better)
Translates to: VFHVCRNKRTFH*RRPELIVHMAS
Trigger: GCTTGCCATGTGCACGATGAGTTCAGGACGGCGGCAGTGGAAGGTCCGTTTGTTACGGCAGACATGGAAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS CCA 72 bp AGAGTCGTCGGGCCTTTCGGAGGTCTCGATATGTGCTaGACAGCTGCCTCTGGTAGTAGCGATGCAGGAAAG +
Preference number: 6 (lower is better)
Translates to: RVVGPFGGLDMC*TAASGSSDAGK
Trigger: CTTTCCTGCATCGCTACTACCAGAGGCAGCTGTCCAGCACATATCGAGACCTCCGAAAGGCCCGACGACTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159499.2
CDS GCA 72 bp TGTCTGGGGAATGTTGTAGCCACAGTCTTCCATGTCTaGCGTAACAAACGGACCTTCCACTGCCGCCGTCCT +
Preference number: 6 (lower is better)
Translates to: CLGNVVATVFHV*RNKRTFHCRRP
Trigger: AGGACGGCGGCAGTGGAAGGTCCGTTTGTTACGGCAGACATGGAAGACTGTGGCTACAACATTCCCCAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS CAA 90 bp GCCAGCCCTAGGATGCCCTCCCAGTTGGAACCATTGATGAAGAACTaGTCCGATTCAGTGATGGCAGCAATGTTGGCACGCACAGTGACG +
Preference number: 6 (lower is better)
Translates to: ASPRMPSQLEPLMKN*SDSVMAAMLARTVT
Trigger: CGTCACTGTGCGTGCCAACATTGCTGCCATCACTGAATCGGACAAGTTCTTCATCAATGGTTCCAACTGGGAGGGCATCCTAGGGCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS CAA 90 bp AAGCCATCCGGGAACTTCTCCGTCGAGGAGGCTGCCTTGATGGACTaGACGGCAGCTTCAAATACTTTCTTGGGCAAGCGAAGGTTGGTG +
Preference number: 6 (lower is better)
Translates to: KPSGNFSVEEAALMD*TAASNTFLGKRRLV
Trigger: CACCAACCTTCGCTTGCCCAAGAAAGTATTTGAAGCTGCCGTCAAGTCCATCAAGGCAGCCTCCTCGACGGAGAAGTTCCCGGATGGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000162587.2
CDS CAA 72 bp AAGCCATCCGGGAACTTCTCCGTCGAGGAGGCTGCCTaGATGGACTTGACGGCAGCTTCAAATACTTTCTTG +
Preference number: 6 (lower is better)
Translates to: KPSGNFSVEEAA*MDLTAASNTFL
Trigger: CAAGAAAGTATTTGAAGCTGCCGTCAAGTCCATCAAGGCAGCCTCCTCGACGGAGAAGTTCCCGGATGGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000162587.2
CDS TCA 72 bp GATGGCCGCCATGACATAGGCTATGGTCATAAGTGTTaGCTCATCTGTCTGGGGAATGTTGTAGCCACAGTC +
Preference number: 6 (lower is better)
Translates to: DGRHDIGYGHKC*LICLGNVVATV
Trigger: GACTGTGGCTACAACATTCCCCAGACAGATGAGTCAACACTTATGACCATAGCCTATGTCATGGCGGCCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS TCA 72 bp GAAGGACTGATTGGTGACTTCACCCATGAGGTAAAGTaGAATGACTGGGAAAATGTTCCAAGGGGTCGTGCC +
Preference number: 6 (lower is better)
Translates to: EGLIGDFTHEVK*NDWENVPRGRA
Trigger: GGCACGACCCCTTGGAACATTTTCCCAGTCATTTCACTTTACCTCATGGGTGAAGTCACCAATCAGTCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034591.11
ENSMUST00000078111.11
ENSMUST00000162587.2
CDS CAA 90 bp GCCATCCGGGAACTTCTCCGTCTCCTTGCAGTCCATCTTGAGATCTaGACCATTGATTTCCACACGTACAATGATCACTTCATAATACCA +
Preference number: 6 (lower is better)
Translates to: AIRELLRLLAVHLEI*TIDFHTYNDHFIIP
Trigger: TGGTATTATGAAGTGATCATTGTACGTGTGGAAATCAATGGTCAAGATCTCAAGATGGACTGCAAGGAGACGGAGAAGTTCCCGGATGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078111.11
CDS CAA 72 bp GAACTTCTCCGTCTCCTTGCAGTCCATCTTGAGATCTaGACCATTGATTTCCACACGTACAATGATCACTTC +
Preference number: 6 (lower is better)
Translates to: ELLRLLAVHLEI*TIDFHTYNDHF
Trigger: GAAGTGATCATTGTACGTGTGGAAATCAATGGTCAAGATCTCAAGATGGACTGCAAGGAGACGGAGAAGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078111.11
CDS TCA 72 bp AACTTCTCCGTCTCCTTGCAGTCCATCTTGAGATCTTaGCCATTGATTTCCACACGTACAATGATCACTTCA +
Preference number: 6 (lower is better)
Translates to: NFSVSLQSILRS*PLISTRTMITS
Trigger: TGAAGTGATCATTGTACGTGTGGAAATCAATGGTCAAGATCTCAAGATGGACTGCAAGGAGACGGAGAAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078111.11
CDS CAA 72 bp GTCGTAGTTGTACTCCTTGCAGTCCATCTTGAGATCTaGACCATTGATTTCCACACGTACAATGATCACTTC +
Preference number: 6 (lower is better)
Translates to: VVVVLLAVHLEI*TIDFHTYNDHF
Trigger: GAAGTGATCATTGTACGTGTGGAAATCAATGGTCAAGATCTCAAGATGGACTGCAAGGAGTACAACTACGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000162587.2
CDS CAA 90 bp AATGCTCTTGTCGTAGTTGTACTCCTTGCAGTCCATCTTGAGATCTaGACCATTGATTTCCACACGTACAATGATCACTTCATAATACCA +
Preference number: 6 (lower is better)
Translates to: NALVVVVLLAVHLEI*TIDFHTYNDHFIIP
Trigger: TGGTATTATGAAGTGATCATTGTACGTGTGGAAATCAATGGTCAAGATCTCAAGATGGACTGCAAGGAGTACAACTACGACAAGAGCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034591.11
ENSMUST00000162587.2