RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BABAM1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031820

Ensembl transcript IDs: ENSMUST00000002473.10, ENSMUST00000212769.2

Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTTTGTTTAGTGCCTGTTTTCTGTGACATTAATAACAGGTCTCAGTaGGCCCAAAGTGACACCAAGGGTGGGCTCAGGGACCTCAGATTT +
Preference number: 1 (lower is better)
Translates to: LCLVPVFCDINNRSQ*AQSDTKGGLRDLRF
Trigger: AAATCTGAGGTCCCTGAGCCCACCCTTGGTGTCACTTTGGGCTCACTGAGACCTGTTATTAATGTCACAGAAAACAGGCACTAAACAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
3UTR TCA 72 bp GTGCCTGTTTTCTGTGACATTAATAACAGGTCTCAGTaGGCCCAAAGTGACACCAAGGGTGGGCTCAGGGAC +
Preference number: 3 (lower is better)
Translates to: VPVFCDINNRSQ*AQSDTKGGLRD
Trigger: GTCCCTGAGCCCACCCTTGGTGTCACTTTGGGCTCACTGAGACCTGTTATTAATGTCACAGAAAACAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
3UTR TCA 72 bp CCAGGAAGAATGAATTTACAGTGGACAGAGTGGGATTaGGCATGGGCCAATAATAGTGTGCCTGCGCTCTCC +
Preference number: 3 (lower is better)
Translates to: PGRMNLQWTEWD*AWANNSVPALS
Trigger: GGAGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACTGTAAATTCATTCTTCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR CCA 90 bp GGTCTCAGTGAGCCCAAAGTGACACCAAGGGTGGGCTCAGGGACCTCAGATTTTCTTAGGCCCGGCTCCTaGGACACTGGCTGCCCCGCC +
Preference number: 4 (lower is better)
Translates to: GLSEPKVTPRVGSGTSDFLRPGS*DTGCPA
Trigger: GGCGGGGCAGCCAGTGTCCCAGGAGCCGGGCCTAAG...AAAATCTGAGGTCCCTGAGCCCACCCTTGGTGTCACTTTGGGCTCACTGAGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR TCA 90 bp AGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTCCTCTGCCCACACTGGCTTaGGCTCCCAGGGCCCGGTCC +
Preference number: 4 (lower is better)
Translates to: SGQSGIEHGPIIVCLRSPLPTLA*APRARS
Trigger: GGACCGGGCCCTGGGAGCTCAAGCCAGTGTGGGCAG...AGGAGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR GCA 90 bp GGTCTCAGTGAGCCCAAAGTGACACCAAGGGTGGGCTCAGGGACCTCAGATTTTCACCCTCGCCCTCGCTaGGGCTGCCCACACTGGCTT +
Preference number: 4 (lower is better)
Translates to: GLSEPKVTPRVGSGTSDFHPRPR*GCPHWL
Trigger: AAGCCAGTGTGGGCAGCCGCAGCGAGGGCGAGGGTG...AAAATCTGAGGTCCCTGAGCCCACCCTTGGTGTCACTTTGGGCTCACTGAGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR GCA 90 bp GGTCTCAGTGAGCCCAAAGTGACACCAAGGGTGGGCTCAGGGACCTCAGATTTTGGCTGCCCCGCCATCTaGAGTGGCTGCCTCACCCTC +
Preference number: 4 (lower is better)
Translates to: GLSEPKVTPRVGSGTSDFGCPAI*SGCLTL
Trigger: GAGGGTGAGGCAGCCACTGCAGATGGCGGGGCAGCC...AAAATCTGAGGTCCCTGAGCCCACCCTTGGTGTCACTTTGGGCTCACTGAGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR GCA 90 bp TACAGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTCGCCCTCGCTGCGGCTaGCCACACTGGCTTGAGCTC +
Preference number: 4 (lower is better)
Translates to: YSGQSGIEHGPIIVCLRSRPRCG*PHWLEL
Trigger: GAGCTCAAGCCAGTGTGGGCAGCCGCAGCGAGGGCG...AGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACTGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR GCA 90 bp GGTCTCAGTGAGCCCAAAGTGACACCAAGGGTGGGCTCAGGGACCTCAGATTTTGCTGATGCTGGTACTTaGCAGGGCTTAGGCCCGGCT +
Preference number: 4 (lower is better)
Translates to: GLSEPKVTPRVGSGTSDFADAGT*QGLGPA
Trigger: AGCCGGGCCTAAGCCCTGGCAAGTACCAGCATCAGC...AAAATCTGAGGTCCCTGAGCCCACCCTTGGTGTCACTTTGGGCTCACTGAGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR CCA 90 bp AGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTCCTTCAGTCAGGGAAAACTaGGGCTGGCAGGGTGGGCGG +
Preference number: 4 (lower is better)
Translates to: SGQSGIEHGPIIVCLRSPSVREN*GWQGGR
Trigger: CCGCCCACCCTGCCAGCCCCAGTTTTCCCTGACTGA...AGGAGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR TCA 90 bp GGTCTCAGTGAGCCCAAAGTGACACCAAGGGTGGGCTCAGGGACCTCAGATTTTCTGGACCTCAGATGCTaGTGCTGGTACTTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: GLSEPKVTPRVGSGTSDFLDLRC*CWYLPG
Trigger: CCCTGGCAAGTACCAGCATCAGCATCTGAGGTCCAG...AAAATCTGAGGTCCCTGAGCCCACCCTTGGTGTCACTTTGGGCTCACTGAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR GCA 90 bp AGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTCCTGGCAGCTCGGTCTTCTaGTGGATGAGGCTGAAGAGG +
Preference number: 4 (lower is better)
Translates to: SGQSGIEHGPIIVCLRSPGSSVF*WMRLKR
Trigger: CCTCTTCAGCCTCATCCAGCAGAAGACCGAGCTGCC...AGGAGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR CCA 90 bp AGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTCCTGTCCTCAGCCCCCTCTaGATTGGATCGAGTGTGAGG +
Preference number: 4 (lower is better)
Translates to: SGQSGIEHGPIIVCLRSPVLSPL*IGSSVR
Trigger: CCTCACACTCGATCCAATCCAGAGGGGGCTGAGGAC...AGGAGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR CCA 90 bp TACAGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTGCTGCAGAGCTCACGTaGGTCAGAGGTCAGGCCAGA +
Preference number: 4 (lower is better)
Translates to: YSGQSGIEHGPIIVCLRSAAELT*VRGQAR
Trigger: TCTGGCCTGACCTCTGACCCACGTGAGCTCTGCAGC...AGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR TCA 90 bp TACAGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTGTGAGGCCTGGGCTCTaGTATCGTCTCCTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: YSGQSGIEHGPIIVCLRSVRPGL*YRLLSF
Trigger: GAAGGAGAGGAGACGATATCAGAGCCCAGGCCTCAC...AGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR TCA 90 bp TACAGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTAGAGGCCTTCCAAATTaGAGGTGGAGCAGGACGCCG +
Preference number: 4 (lower is better)
Translates to: YSGQSGIEHGPIIVCLRSRGLPN*RWSRTP
Trigger: CGGCGTCCTGCTCCACCTTCAATTTGGAAGGCCTCT...AGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR GCA 90 bp AGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTCCTGGGGGTGGGATGGTTTaGACATTCTCTGTGACTGGC +
Preference number: 4 (lower is better)
Translates to: SGQSGIEHGPIIVCLRSPGGGMV*TFSVTG
Trigger: GCCAGTCACAGAGAATGTGCAAACCATCCCACCCCC...AGGAGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR TCA 90 bp GGTCTCAGTGAGCCCAAAGTGACACCAAGGGTGGGCTCAGGGACCTCAGATTTTTTTGCACATTCTCTGTaGCTGGCAGCTCGGTCTTCT +
Preference number: 4 (lower is better)
Translates to: GLSEPKVTPRVGSGTSDFFAHSL*LAARSS
Trigger: AGAAGACCGAGCTGCCAGTCACAGAGAATGTGCAAA...AAAATCTGAGGTCCCTGAGCCCACCCTTGGTGTCACTTTGGGCTCACTGAGACC
53% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR TCA 90 bp AGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTCCTTGTCCAGGCTACCCATaGAGGCAAACATGTCCTTCC +
Preference number: 4 (lower is better)
Translates to: SGQSGIEHGPIIVCLRSPCPGYP*RQTCPS
Trigger: GGAAGGACATGTTTGCCTTCATGGGTAGCCTGGACA...AGGAGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR GCA 90 bp AGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTCCTGGCAGGACCAGCAAGTaGTACCTCATACTTGTAGCT +
Preference number: 4 (lower is better)
Translates to: SGQSGIEHGPIIVCLRSPGRTSK*YLILVA
Trigger: AGCTACAAGTATGAGGTAGCACTTGCTGGTCCTGCC...AGGAGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR CCA 90 bp TACAGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTCACATTCTCTGTGACTaGCAGCTCGGTCTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: YSGQSGIEHGPIIVCLRSHILCD*QLGLLL
Trigger: CAGCAGAAGACCGAGCTGCCAGTCACAGAGAATGTG...AGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR CCA 90 bp TACAGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTTGGACAGTTGACCCTTaGTGTTCGAATCTGGACCTC +
Preference number: 4 (lower is better)
Translates to: YSGQSGIEHGPIIVCLRSWTVDP*CSNLDL
Trigger: GAGGTCCAGATTCGAACACCAAGGGTCAACTGTCCA...AGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR TCA 90 bp AGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTCCTAAAGATCCAGACAGATaGTCACCTTCTCTGGACAGT +
Preference number: 4 (lower is better)
Translates to: SGQSGIEHGPIIVCLRSPKDPDR*SPSLDS
Trigger: ACTGTCCAGAGAAGGTGATCATCTGTCTGGATCTTT...AGGAGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR CCA 90 bp TACAGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTGATGATCACCTTCTCTaGACAGTTGACCCTTGGTGT +
Preference number: 4 (lower is better)
Translates to: YSGQSGIEHGPIIVCLRSDDHLL*TVDPWC
Trigger: ACACCAAGGGTCAACTGTCCAGAGAAGGTGATCATC...AGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR CCA 90 bp AGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTCCTGGAACATCTTCTTCATaGGCTCAGTCAGGGAAAACT +
Preference number: 4 (lower is better)
Translates to: SGQSGIEHGPIIVCLRSPGTSSS*AQSGKT
Trigger: AGTTTTCCCTGACTGAGCCCATGAAGAAGATGTTCC...AGGAGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR GCA 90 bp GGTCTCAGTGAGCCCAAAGTGACACCAAGGGTGGGCTCAGGGACCTCAGATTTTCAATCTTGTGCTTTGTaGGAACAAACATCTCAACCA +
Preference number: 4 (lower is better)
Translates to: GLSEPKVTPRVGSGTSDFQSCAL*EQTSQP
Trigger: TGGTTGAGATGTTTGTTCGCACAAAGCACAAGATTG...AAAATCTGAGGTCCCTGAGCCCACCCTTGGTGTCACTTTGGGCTCACTGAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR GCA 90 bp GGTCTCAGTGAGCCCAAAGTGACACCAAGGGTGGGCTCAGGGACCTCAGATTTTCTCTTGTCAATCTTGTaGTTTGTGCGAACAAACATC +
Preference number: 4 (lower is better)
Translates to: GLSEPKVTPRVGSGTSDFLLSIL*FVRTNI
Trigger: GATGTTTGTTCGCACAAAGCACAAGATTGACAAGAG...AAAATCTGAGGTCCCTGAGCCCACCCTTGGTGTCACTTTGGGCTCACTGAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR GCA 90 bp AGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTCCTCTTCCTTCTCCTCAGTaGCATTGTGGATATAAACGA +
Preference number: 4 (lower is better)
Translates to: SGQSGIEHGPIIVCLRSPLPSPQ*HCGYKR
Trigger: TCGTTTATATCCACAATGGCACTGAGGAGAAGGAAG...AGGAGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR CCA 90 bp ATTTTTATTCCGGTGACAAAAATAGTCCCAGGAAGAATGAATTTACAGTGGACACTTCCTCCTCCTCCGTaGGGCTGTTCGCCTCTGCCA +
Preference number: 4 (lower is better)
Translates to: IFIPVTKIVPGRMNLQWTLPPPP*GCSPLP
Trigger: TGGCAGAGGCGAACAGCCCCACGGAGGAGGAGGAAG...TGTCCACTGTAAATTCATTCTTCCTGGGACTATTTTTGTCACCGGAATAAAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR GCA 90 bp ATTTTTATTCCGGTGACAAAAATAGTCCCAGGAAGAATGAATTTACAGTGGACAGGTCATACAGGCAGCTaGAGAGCTCACGTGGGTCAG +
Preference number: 4 (lower is better)
Translates to: IFIPVTKIVPGRMNLQWTGHTGS*RAHVGQ
Trigger: CTGACCCACGTGAGCTCTGCAGCTGCCTGTATGACC...TGTCCACTGTAAATTCATTCTTCCTGGGACTATTTTTGTCACCGGAATAAAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR CCA 90 bp ATTTTTATTCCGGTGACAAAAATAGTCCCAGGAAGAATGAATTTACAGTGGACACCTCATACTTGTAGCTaGCGCCCTTGGTGTCCAGGC +
Preference number: 4 (lower is better)
Translates to: IFIPVTKIVPGRMNLQWTPHTCS*RPWCPG
Trigger: GCCTGGACACCAAGGGCGCCAGCTACAAGTATGAGG...TGTCCACTGTAAATTCATTCTTCCTGGGACTATTTTTGTCACCGGAATAAAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR TCA 90 bp ATTTTTATTCCGGTGACAAAAATAGTCCCAGGAAGAATGAATTTACAGTGGACACCTTCTCTGGACAGTTaGCCCTTGGTGTTCGAATCT +
Preference number: 4 (lower is better)
Translates to: IFIPVTKIVPGRMNLQWTPSLDS*PLVFES
Trigger: AGATTCGAACACCAAGGGTCAACTGTCCAGAGAAGG...TGTCCACTGTAAATTCATTCTTCCTGGGACTATTTTTGTCACCGGAATAAAAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR CCA 90 bp ATTTTTATTCCGGTGACAAAAATAGTCCCAGGAAGAATGAATTTACAGTGGACAACCAGTGCAAATTCGTaGCTCTTGTCAATCTTGTGC +
Preference number: 4 (lower is better)
Translates to: IFIPVTKIVPGRMNLQWTTSANS*LLSILC
Trigger: GCACAAGATTGACAAGAGCCACGAATTTGCACTGGT...TGTCCACTGTAAATTCATTCTTCCTGGGACTATTTTTGTCACCGGAATAAAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS GCA 90 bp ACCCTTGGTGTTCGAATCTGGACCTCAGATGCTGATGCTGGTACTTaGCAGGGCTTAGGCCCGGCTCCTGGGACACTGGCTGCCCCGCCA +
Preference number: 5 (lower is better)
Translates to: TLGVRIWTSDADAGT*QGLGPAPGTLAAPP
Trigger: TGGCGGGGCAGCCAGTGTCCCAGGAGCCGGGCCTAAGCCCTGGCAAGTACCAGCATCAGCATCTGAGGTCCAGATTCGAACACCAAGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR CAA 90 bp AGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTCCTGCTGCCCACACTGGCTaGAGCTCCCAGGGCCCGGTC +
Preference number: 5 (lower is better)
Translates to: SGQSGIEHGPIIVCLRSPAAHTG*SSQGPV
Trigger: GACCGGGCCCTGGGAGCTCAAGCCAGTGTGGGCAGC...AGGAGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS GCA 90 bp CAACTTGGCCATGCAATTGTGCAGCTCCAGGGCAGGACCAGCAAGTaGTACCTCATACTTGTAGCTGGCGCCCTTGGTGTCCAGGCTACC +
Preference number: 5 (lower is better)
Translates to: QLGHAIVQLQGRTSK*YLILVAGALGVQAT
Trigger: GGTAGCCTGGACACCAAGGGCGCCAGCTACAAGTATGAGGTAGCACTTGCTGGTCCTGCCCTGGAGCTGCACAATTGCATGGCCAAGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS TCA 90 bp TTGCAGGGATCCCACAGTACTACTGAGGCCCCACTGCATCGTCACTaGAGTAGGGCTGGGGACAGTGACAAGGATACTGAAGGTGGAGCA +
Preference number: 5 (lower is better)
Translates to: LQGSHSTTEAPLHRH*SRAGDSDKDTEGGA
Trigger: TGCTCCACCTTCAGTATCCTTGTCACTGTCCCCAGCCCTACTTCAGTGACGATGCAGTGGGGCCTCAGTAGTACTGTGGGATCCCTGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212769.2
CDS-3UTR CAA 90 bp GGTCTCAGTGAGCCCAAAGTGACACCAAGGGTGGGCTCAGGGACCTCAGATTTTAAGAGGCCTTCCAAATaGAAGGTGGAGCAGGACGCC +
Preference number: 5 (lower is better)
Translates to: GLSEPKVTPRVGSGTSDFKRPSK*KVEQDA
Trigger: GGCGTCCTGCTCCACCTTCAATTTGGAAGGCCTCTT...AAAATCTGAGGTCCCTGAGCCCACCCTTGGTGTCACTTTGGGCTCACTGAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS GCA 90 bp GGTGGGATGGTTTGCACATTCTCTGTGACTGGCAGCTCGGTCTTCTaGTGGATGAGGCTGAAGAGGCCTTCCAAATTGAAGGTGGAGCAG +
Preference number: 5 (lower is better)
Translates to: GGMVCTFSVTGSSVF*WMRLKRPSKLKVEQ
Trigger: CTGCTCCACCTTCAATTTGGAAGGCCTCTTCAGCCTCATCCAGCAGAAGACCGAGCTGCCAGTCACAGAGAATGTGCAAACCATCCCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR CAA 90 bp AGTGGACAGAGTGGGATTGAGCATGGGCCAATAATAGTGTGCCTGCGCTCTCCTACCTTCTCTGGACAGTaGACCCTTGGTGTTCGAATC +
Preference number: 5 (lower is better)
Translates to: SGQSGIEHGPIIVCLRSPTFSGQ*TLGVRI
Trigger: GATTCGAACACCAAGGGTCAACTGTCCAGAGAAGGT...AGGAGAGCGCAGGCACACTATTATTGGCCCATGCTCAATCCCACTCTGTCCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS-3UTR CAA 90 bp GGTCTCAGTGAGCCCAAAGTGACACCAAGGGTGGGCTCAGGGACCTCAGATTTTTGGCTCTTGTCAATCTaGTGCTTTGTGCGAACAAAC +
Preference number: 5 (lower is better)
Translates to: GLSEPKVTPRVGSGTSDFWLLSI*CFVRTN
Trigger: GTTTGTTCGCACAAAGCACAAGATTGACAAGAGCCA...AAAATCTGAGGTCCCTGAGCCCACCCTTGGTGTCACTTTGGGCTCACTGAGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CCA 90 bp CACATTCAGGGCGTTTGTCCTAGAGCCATTAAAGGACTCCAGCTTTaGCACAGACATCTCCTCCGAAAGATCCAGACAGATGATCACCTT +
Preference number: 5 (lower is better)
Translates to: HIQGVCPRAIKGLQL*HRHLLRKIQTDDHL
Trigger: AAGGTGATCATCTGTCTGGATCTTTCGGAGGAGATGTCTGTGCCAAAGCTGGAGTCCTTTAATGGCTCTAGGACAAACGCCCTGAATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CCA 90 bp GACAGCCAGGCGGAGTCGTCATTCACTACAACCAGTGCAAATTCGTaGCTCTTGTCAATCTTGTGCTTTGTGCGAACAAACATCTCAACC +
Preference number: 5 (lower is better)
Translates to: DSQAESSFTTTSANS*LLSILCFVRTNIST
Trigger: GGTTGAGATGTTTGTTCGCACAAAGCACAAGATTGACAAGAGCCACGAATTTGCACTGGTTGTAGTGAATGACGACTCCGCCTGGCTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002473.10
ENSMUST00000212769.2
CDS GCA 90 bp CTACAACCAGTGCAAATTCGTGGCTCTTGTCAATCTTGTGCTTTGTaGGAACAAACATCTCAACCATCTTCTGAGACACATTCAGGGCGT +
Preference number: 5 (lower is better)
Translates to: LQPVQIRGSCQSCAL*EQTSQPSSETHSGR
Trigger: ACGCCCTGAATGTGTCTCAGAAGATGGTTGAGATGTTTGTTCGCACAAAGCACAAGATTGACAAGAGCCACGAATTTGCACTGGTTGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002473.10
ENSMUST00000212769.2
CDS GCA 90 bp AGGCAAACATGTCCTTCCAGCTCATATCCTCTTCCTTCTCCTCAGTaGCATTGTGGATATAAACGATGTCGAAGAAGAAGTAGGGACACT +
Preference number: 5 (lower is better)
Translates to: RQTCPSSSYPLPSPQ*HCGYKRCRRRSRDT
Trigger: AGTGTCCCTACTTCTTCTTCGACATCGTTTATATCCACAATGGCACTGAGGAGAAGGAAGAGGATATGAGCTGGAAGGACATGTTTGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CCA 72 bp GAGCTCCCAGGGCCCGGTCCTCAGCCCCCTCTGGATTaGATCGAGTGTGAGGCCTGGGCTCTGATATCGTCT +
Preference number: 6 (lower is better)
Translates to: ELPGPGPQPPLD*IECEAWALISS
Trigger: AGACGATATCAGAGCCCAGGCCTCACACTCGATCCAATCCAGAGGGGGCTGAGGACCGGGCCCTGGGAGCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CAA 90 bp GTCCTCCTCCAGCAGGCTGTAGCTCGCGTGGGTCTGGCAGGGTCTTaGCAGCGGGTGGGCCAGCAACTTGGCCATGCAATTGTGCAGCTC +
Preference number: 6 (lower is better)
Translates to: VLLQQAVARVGLAGS*QRVGQQLGHAIVQL
Trigger: GAGCTGCACAATTGCATGGCCAAGTTGCTGGCCCACCCGCTGCAAAGACCCTGCCAGACCCACGCGAGCTACAGCCTGCTGGAGGAGGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CCA 72 bp TCTGGCAGGGTCTTTGCAGCGGGTGGGCCAGCAACTTaGCCATGCAATTGTGCAGCTCCAGGGCAGGACCAG +
Preference number: 6 (lower is better)
Translates to: SGRVFAAGGPAT*PCNCAAPGQDQ
Trigger: CTGGTCCTGCCCTGGAGCTGCACAATTGCATGGCCAAGTTGCTGGCCCACCCGCTGCAAAGACCCTGCCAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CAA 72 bp GTCTGGCAGGGTCTTTGCAGCGGGTGGGCCAGCAACTaGGCCATGCAATTGTGCAGCTCCAGGGCAGGACCA +
Preference number: 6 (lower is better)
Translates to: VWQGLCSGWASN*AMQLCSSRAGP
Trigger: TGGTCCTGCCCTGGAGCTGCACAATTGCATGGCCAAGTTGCTGGCCCACCCGCTGCAAAGACCCTGCCAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CAA 72 bp CAGCAGGCTGTAGCTCGCGTGGGTCTGGCAGGGTCTTaGCAGCGGGTGGGCCAGCAACTTGGCCATGCAATT +
Preference number: 6 (lower is better)
Translates to: QQAVARVGLAGS*QRVGQQLGHAI
Trigger: AATTGCATGGCCAAGTTGCTGGCCCACCCGCTGCAAAGACCCTGCCAGACCCACGCGAGCTACAGCCTGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS TCA 72 bp GCCCGGTCCTCAGCCCCCTCTGGATTGGATCGAGTGTaGGGCCTGGGCTCTGATATCGTCTCCTCTCCTTCT +
Preference number: 6 (lower is better)
Translates to: ARSSAPSGLDRV*GLGSDIVSSPS
Trigger: AGAAGGAGAGGAGACGATATCAGAGCCCAGGCCTCACACTCGATCCAATCCAGAGGGGGCTGAGGACCGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS GCA 72 bp AGGGTCTTTGCAGCGGGTGGGCCAGCAACTTGGCCATaGAATTGTGCAGCTCCAGGGCAGGACCAGCAAGTG +
Preference number: 6 (lower is better)
Translates to: RVFAAGGPATWP*NCAAPGQDQQV
Trigger: CACTTGCTGGTCCTGCCCTGGAGCTGCACAATTGCATGGCCAAGTTGCTGGCCCACCCGCTGCAAAGACCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CAA 72 bp CTTTGCAGCGGGTGGGCCAGCAACTTGGCCATGCAATaGTGCAGCTCCAGGGCAGGACCAGCAAGTGCTACC +
Preference number: 6 (lower is better)
Translates to: LCSGWASNLAMQ*CSSRAGPASAT
Trigger: GGTAGCACTTGCTGGTCCTGCCCTGGAGCTGCACAATTGCATGGCCAAGTTGCTGGCCCACCCGCTGCAAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS GCA 72 bp GTTCGAATCTGGACCTCAGATGCTGATGCTGGTACTTaGCAGGGCTTAGGCCCGGCTCCTGGGACACTGGCT +
Preference number: 6 (lower is better)
Translates to: VRIWTSDADAGT*QGLGPAPGTLA
Trigger: AGCCAGTGTCCCAGGAGCCGGGCCTAAGCCCTGGCAAGTACCAGCATCAGCATCTGAGGTCCAGATTCGAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CAA 90 bp GGCAGCTCGGTCTTCTGCTGGATGAGGCTGAAGAGGCCTTCCAAATaGAAGGTGGAGCAGGACGCCGTCTCCAGGTCATACAGGCAGCTG +
Preference number: 6 (lower is better)
Translates to: GSSVFCWMRLKRPSK*KVEQDAVSRSYRQL
Trigger: CAGCTGCCTGTATGACCTGGAGACGGCGTCCTGCTCCACCTTCAATTTGGAAGGCCTCTTCAGCCTCATCCAGCAGAAGACCGAGCTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CAA 90 bp TGGCAGGGTCTTTGCAGCGGGTGGGCCAGCAACTTGGCCATGCAATaGTGCAGCTCCAGGGCAGGACCAGCAAGTGCTACCTCATACTTG +
Preference number: 6 (lower is better)
Translates to: WQGLCSGWASNLAMQ*CSSRAGPASATSYL
Trigger: CAAGTATGAGGTAGCACTTGCTGGTCCTGCCCTGGAGCTGCACAATTGCATGGCCAAGTTGCTGGCCCACCCGCTGCAAAGACCCTGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS GCA 72 bp CATGCAATTGTGCAGCTCCAGGGCAGGACCAGCAAGTaGTACCTCATACTTGTAGCTGGCGCCCTTGGTGTC +
Preference number: 6 (lower is better)
Translates to: HAIVQLQGRTSK*YLILVAGALGV
Trigger: GACACCAAGGGCGCCAGCTACAAGTATGAGGTAGCACTTGCTGGTCCTGCCCTGGAGCTGCACAATTGCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS GCA 72 bp TGTTGCAGGGATCCCACAGTACTACTGAGGCCCCACTaGATCGTCACTGAAGTAGGGCTGGGGACAGTGACA +
Preference number: 6 (lower is better)
Translates to: CCRDPTVLLRPH*IVTEVGLGTVT
Trigger: TGTCACTGTCCCCAGCCCTACTTCAGTGACGATGCAGTGGGGCCTCAGTAGTACTGTGGGATCCCTGCAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212769.2
CDS CCA 72 bp CCTCAGCCCCCTCTGGATTGGATCGAGTGTGAGGCCTaGGCTCTGATATCGTCTCCTCTCCTTCTTCTTCCT +
Preference number: 6 (lower is better)
Translates to: PQPPLDWIECEA*ALISSPLLLLP
Trigger: AGGAAGAAGAAGGAGAGGAGACGATATCAGAGCCCAGGCCTCACACTCGATCCAATCCAGAGGGGGCTGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CAA 72 bp GTCTTCTGCTGGATGAGGCTGAAGAGGCCTTCCAAATaGAAGGTGGAGCAGGACGCCGTCTCCAGGTCATAC +
Preference number: 6 (lower is better)
Translates to: VFCWMRLKRPSK*KVEQDAVSRSY
Trigger: GTATGACCTGGAGACGGCGTCCTGCTCCACCTTCAATTTGGAAGGCCTCTTCAGCCTCATCCAGCAGAAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS TCA 72 bp TCCCACAGTACTACTGAGGCCCCACTGCATCGTCACTaGAGTAGGGCTGGGGACAGTGACAAGGATACTGAA +
Preference number: 6 (lower is better)
Translates to: SHSTTEAPLHRH*SRAGDSDKDTE
Trigger: TTCAGTATCCTTGTCACTGTCCCCAGCCCTACTTCAGTGACGATGCAGTGGGGCCTCAGTAGTACTGTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212769.2
CDS CCA 72 bp TGCACATTCTCTGTGACTGGCAGCTCGGTCTTCTGCTaGATGAGGCTGAAGAGGCCTTCCAAATTGAAGGTG +
Preference number: 6 (lower is better)
Translates to: CTFSVTGSSVFC*MRLKRPSKLKV
Trigger: CACCTTCAATTTGGAAGGCCTCTTCAGCCTCATCCAGCAGAAGACCGAGCTGCCAGTCACAGAGAATGTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS GCA 72 bp GTTTGCACATTCTCTGTGACTGGCAGCTCGGTCTTCTaGTGGATGAGGCTGAAGAGGCCTTCCAAATTGAAG +
Preference number: 6 (lower is better)
Translates to: VCTFSVTGSSVF*WMRLKRPSKLK
Trigger: CTTCAATTTGGAAGGCCTCTTCAGCCTCATCCAGCAGAAGACCGAGCTGCCAGTCACAGAGAATGTGCAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CCA 72 bp CTCCTCCGAAAGATCCAGACAGATGATCACCTTCTCTaGACAGTTGACCCTTGGTGTTCGAATCTGGACCTC +
Preference number: 6 (lower is better)
Translates to: LLRKIQTDDHLL*TVDPWCSNLDL
Trigger: GAGGTCCAGATTCGAACACCAAGGGTCAACTGTCCAGAGAAGGTGATCATCTGTCTGGATCTTTCGGAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CAA 90 bp ATCTCCTCCGAAAGATCCAGACAGATGATCACCTTCTCTGGACAGTaGACCCTTGGTGTTCGAATCTGGACCTCAGATGCTGATGCTGGT +
Preference number: 6 (lower is better)
Translates to: ISSERSRQMITFSGQ*TLGVRIWTSDADAG
Trigger: ACCAGCATCAGCATCTGAGGTCCAGATTCGAACACCAAGGGTCAACTGTCCAGAGAAGGTGATCATCTGTCTGGATCTTTCGGAGGAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CCA 72 bp GGCGTTTGTCCTAGAGCCATTAAAGGACTCCAGCTTTaGCACAGACATCTCCTCCGAAAGATCCAGACAGAT +
Preference number: 6 (lower is better)
Translates to: GVCPRAIKGLQL*HRHLLRKIQTD
Trigger: ATCTGTCTGGATCTTTCGGAGGAGATGTCTGTGCCAAAGCTGGAGTCCTTTAATGGCTCTAGGACAAACGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CAA 72 bp GAAAGATCCAGACAGATGATCACCTTCTCTGGACAGTaGACCCTTGGTGTTCGAATCTGGACCTCAGATGCT +
Preference number: 6 (lower is better)
Translates to: ERSRQMITFSGQ*TLGVRIWTSDA
Trigger: AGCATCTGAGGTCCAGATTCGAACACCAAGGGTCAACTGTCCAGAGAAGGTGATCATCTGTCTGGATCTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002473.10
CDS CAA 90 bp CAGGCGGAGTCGTCATTCACTACAACCAGTGCAAATTCGTGGCTCTaGTCAATCTTGTGCTTTGTGCGAACAAACATCTCAACCATCTTC +
Preference number: 6 (lower is better)
Translates to: QAESSFTTTSANSWL*SILCFVRTNISTIF
Trigger: GAAGATGGTTGAGATGTTTGTTCGCACAAAGCACAAGATTGACAAGAGCCACGAATTTGCACTGGTTGTAGTGAATGACGACTCCGCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002473.10
ENSMUST00000212769.2
CDS CCA 72 bp GCGGAGTCGTCATTCACTACAACCAGTGCAAATTCGTaGCTCTTGTCAATCTTGTGCTTTGTGCGAACAAAC +
Preference number: 6 (lower is better)
Translates to: AESSFTTTSANS*LLSILCFVRTN
Trigger: GTTTGTTCGCACAAAGCACAAGATTGACAAGAGCCACGAATTTGCACTGGTTGTAGTGAATGACGACTCCGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002473.10
ENSMUST00000212769.2
CDS CAA 90 bp TCACTACAACCAGTGCAAATTCGTGGCTCTTGTCAATCTTGTGCTTaGTGCGAACAAACATCTCAACCATCTTCTGAGACACATTCAGGG +
Preference number: 6 (lower is better)
Translates to: SLQPVQIRGSCQSCA*CEQTSQPSSETHSG
Trigger: CCCTGAATGTGTCTCAGAAGATGGTTGAGATGTTTGTTCGCACAAAGCACAAGATTGACAAGAGCCACGAATTTGCACTGGTTGTAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002473.10
ENSMUST00000212769.2
CDS CAA 72 bp CCAGTGCAAATTCGTGGCTCTTGTCAATCTTGTGCTTaGTGCGAACAAACATCTCAACCATCTTCTGAGACA +
Preference number: 6 (lower is better)
Translates to: PVQIRGSCQSCA*CEQTSQPSSET
Trigger: TGTCTCAGAAGATGGTTGAGATGTTTGTTCGCACAAAGCACAAGATTGACAAGAGCCACGAATTTGCACTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002473.10
ENSMUST00000212769.2
CDS GCA 72 bp GTGCAAATTCGTGGCTCTTGTCAATCTTGTGCTTTGTaGGAACAAACATCTCAACCATCTTCTGAGACACAT +
Preference number: 6 (lower is better)
Translates to: VQIRGSCQSCAL*EQTSQPSSETH
Trigger: ATGTGTCTCAGAAGATGGTTGAGATGTTTGTTCGCACAAAGCACAAGATTGACAAGAGCCACGAATTTGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002473.10
ENSMUST00000212769.2
CDS CAA 72 bp ACTACAACCAGTGCAAATTCGTGGCTCTTGTCAATCTaGTGCTTTGTGCGAACAAACATCTCAACCATCTTC +
Preference number: 6 (lower is better)
Translates to: TTTSANSWLLSI*CFVRTNISTIF
Trigger: GAAGATGGTTGAGATGTTTGTTCGCACAAAGCACAAGATTGACAAGAGCCACGAATTTGCACTGGTTGTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002473.10
ENSMUST00000212769.2
CDS CAA 72 bp TCGTCATTCACTACAACCAGTGCAAATTCGTGGCTCTaGTCAATCTTGTGCTTTGTGCGAACAAACATCTCA +
Preference number: 6 (lower is better)
Translates to: SSFTTTSANSWL*SILCFVRTNIS
Trigger: TGAGATGTTTGTTCGCACAAAGCACAAGATTGACAAGAGCCACGAATTTGCACTGGTTGTAGTGAATGACGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002473.10
ENSMUST00000212769.2