RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for B4GALNT4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055629

Ensembl transcript IDs: ENSMUST00000048002.7, ENSMUST00000210517.2

Found 189 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCCCAGAGGAGGCTTTTAGGGACCAGCACAGGTGGTGGCAGAGCCTaGATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCC +
Preference number: 1 (lower is better)
Translates to: SQRRLLGTSTGGGRA*IKLRTQLLPAAPRP
Trigger: GGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAAAGCCTCCTCTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
3UTR CCA 90 bp CTATCTGCAGTCCCAGAGGAGGCTTTTAGGGACCAGCACAGGTGGTaGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGCTGC +
Preference number: 1 (lower is better)
Translates to: LSAVPEEAFRDQHRW*QSLNQAQDAASTCC
Trigger: GCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAAAGCCTCCTCTGGGACTGCAGATAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
3UTR CCA 90 bp CAATGTCGTCGCTACGGAAAATTTCACAGAAATCATCAGGGGGTGTaGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCA +
Preference number: 1 (lower is better)
Translates to: QCRRYGKFHRNHQGV*GPRCLPCHERHLSA
Trigger: TGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTTCTGTGAAATTTTCCGTAGCGACGACATTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
3UTR-3UTR TCA 90 bp AAATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTGGTGGTGGCAGAGCCTaGATCAAGCTCAGGACGCAG +
Preference number: 2 (lower is better)
Translates to: KSSGGVGTKVPALPRAPPGGGRA*IKLRTQ
Trigger: CTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACC...AGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
3UTR GCA 72 bp AATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTaGCACGAGCGCCACCTATCTGCAGTCCCAGAGGAG +
Preference number: 3 (lower is better)
Translates to: NHQGVWGPRCLP*HERHLSAVPEE
Trigger: CTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
3UTR GCA 72 bp AGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGCTaGACCAAGACCCGGTGGCCCAGAGGGCAGCTAGGT +
Preference number: 3 (lower is better)
Translates to: SLNQAQDAASTC*TKTRWPRGQLG
Trigger: ACCTAGCTGCCCTCTGGGCCACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
3UTR GCA 72 bp CAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTaGTGCACCAAGACCCGGTGGCCCAGAGGGCAGCTA +
Preference number: 3 (lower is better)
Translates to: QSLNQAQDAAST*CTKTRWPRGQL
Trigger: TAGCTGCCCTCTGGGCCACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
3UTR CCA 72 bp GCAGTCCCAGAGGAGGCTTTTAGGGACCAGCACAGGTaGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCT +
Preference number: 3 (lower is better)
Translates to: AVPEEAFRDQHR*WQSLNQAQDAA
Trigger: AGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAAAGCCTCCTCTGGGACTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
3UTR CCA 72 bp GTCCCAGAGGAGGCTTTTAGGGACCAGCACAGGTGGTaGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCT +
Preference number: 3 (lower is better)
Translates to: VPEEAFRDQHRW*QSLNQAQDAAS
Trigger: AGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAAAGCCTCCTCTGGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
3UTR TCA 72 bp AGGCTTTTAGGGACCAGCACAGGTGGTGGCAGAGCCTaGATCAAGCTCAGGACGCAGCTTCTACCTGCTGCA +
Preference number: 3 (lower is better)
Translates to: RLLGTSTGGGRA*IKLRTQLLPAA
Trigger: TGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAAAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS-3UTR CCA 90 bp ACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCCCCTCCCGGCCTCCCTaGCTGGTCTGGGCCCTGACT +
Preference number: 4 (lower is better)
Translates to: TKVPALPRAPPICSPRGGPSRPP*LVWALT
Trigger: AGTCAGGGCCCAGACCAGCCAGGGAGGCCGGGAGGG...GCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp GGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGCCACGCGGCGCAGGTaGGCAGCAGCAACAGCAGCA +
Preference number: 4 (lower is better)
Translates to: GTKVPALPRAPPICSPRGATRRR*AAATAA
Trigger: TGCTGCTGTTGCTGCTGCTCACCTGCGCCGCGTGGC...TCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp GGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGAAACAGCATGTTTaGGCCCCGCCCCTCGGGCGC +
Preference number: 4 (lower is better)
Translates to: GDQGACPATSATYLQSQRRKQHV*APPLGR
Trigger: GCGCCCGAGGGGCGGGGCCCAAACATGCTGTTTCCT...CCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp GGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGGGCTGGTCTGGGCCCTaGCTGGGGGCTTTAGTTCTG +
Preference number: 4 (lower is better)
Translates to: GDQGACPATSATYLQSQRGWSGP*LGALVL
Trigger: CAGAACTAAAGCCCCCAGTCAGGGCCCAGACCAGCC...CCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp GTGTGGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCACGTTCCAGTGGAGGCTaGTGGGGTGGGGGTCCTGTG +
Preference number: 4 (lower is better)
Translates to: VWGPRCLPCHERHLSAVPRSSGG*WGGGPV
Trigger: CACAGGACCCCCACCCCAGCAGCCTCCACTGGAACG...TGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCCACAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp GGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGGGTGAATTCTCCAGGTaGGGTCCACTCGGAGCCAGT +
Preference number: 4 (lower is better)
Translates to: GDQGACPATSATYLQSQRGEFSR*GPLGAS
Trigger: ACTGGCTCCGAGTGGACCGCACCTGGAGAATTCACC...CCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp GACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGGCATCCACTCCAGTTTaGAGGCCTGCAGAGCGCTCG +
Preference number: 4 (lower is better)
Translates to: DQGACPATSATYLQSQRRASTPV*RPAERS
Trigger: CGAGCGCTCTGCAGGCCTGCAAACTGGAGTGGATGC...CCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp ATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATGGGCGAAGGCCAGCTTaGCCTCCACGCAATGCTTGC +
Preference number: 4 (lower is better)
Translates to: IIRGCGDQGACPATSATYGRRPA*PPRNAC
Trigger: GCAAGCATTGCGTGGAGGGCAAGCTGGCCTTCGCCC...ATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp CCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTAGGGACCAGGGGCACCTTTGCGGCTaGGTGTGGCCCACATGCCTC +
Preference number: 4 (lower is better)
Translates to: PCHERHLSAVPEEAFRDQGHLCG*VWPTCL
Trigger: GAGGCATGTGGGCCACACGCAGCCGCAAAGGTGCCC...CTGGTCCCTAAAAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS-3UTR CCA 90 bp CAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTCGCCATGGGGGTGTCTaGTGGGTGAGGTTCAGTGGG +
Preference number: 4 (lower is better)
Translates to: QGACPATSATYLQSQRRLRHGGV*WVRFSG
Trigger: CCCACTGAACCTCACCCACCAGACACCCCCATGGCG...AAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp CAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTAGGCCGGCAGAGCTCTaGGCGACTGTCTGGGTGGAT +
Preference number: 4 (lower is better)
Translates to: QGACPATSATYLQSQRRLRPAEL*ATVWVD
Trigger: ATCCACCCAGACAGTCGCCCAGAGCTCTGCCGGCCT...AAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS-3UTR TCA 90 bp CAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTTCCATCCGAGGAGTaGGGAAGAAGGTATCCCTGG +
Preference number: 4 (lower is better)
Translates to: QGVWGPRCLPCHERHLSAVPSEE*GRRYPW
Trigger: CCAGGGATACCTTCTTCCTCACTCCTCGGATGGAAC...TGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp GTGTGGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCACACAGAGGAAAACGATaGTGCTGGGGTCCTCCACGG +
Preference number: 4 (lower is better)
Translates to: VWGPRCLPCHERHLSAVPHRGKR*CWGPPR
Trigger: CCGTGGAGGACCCCAGCAGCATCGTTTTCCTCTGTG...TGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCCACAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp CTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGGCCCAGAGGGCAGCTTGCCCTCCACGCAATaGTTGCGGATGCTGTCCAGG +
Preference number: 4 (lower is better)
Translates to: LRTQLLPAAPRPGGPEGSLPSTQ*LRMLSR
Trigger: CCTGGACAGCATCCGCAAGCATTGCGTGGAGGGCAA...GCTGCCCTCTGGGCCACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp CTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGGCCCAGAGGGCAGCACCTCCAGCCCTGCCTaGAGGACCCTGTCAAGAAGT +
Preference number: 4 (lower is better)
Translates to: LRTQLLPAAPRPGGPEGSTSSPA*RTLSRS
Trigger: ACTTCTTGACAGGGTCCTGCAGGCAGGGCTGGAGGT...GCTGCCCTCTGGGCCACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp GGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGTGCGTGTGGCCCACATaGCTCGCTTCGAGTGATAGT +
Preference number: 4 (lower is better)
Translates to: GDQGACPATSATYLQSQRCVWPT*LASSDS
Trigger: ACTATCACTCGAAGCGAGGCATGTGGGCCACACGCA...CCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS-3UTR TCA 90 bp GTGTGGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGCCTGCTCCTCTTCATaGCTTTCACTCGAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: VWGPRCLPCHERHLSAVPACSSS*LSLESS
Trigger: GGAGGACTCGAGTGAAAGTCATGAAGAGGAGCAGGC...TGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCCACAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp CCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGACGTGCGCTGCCAGTTaGTGGCATCCTCCCGCCAGC +
Preference number: 4 (lower is better)
Translates to: PAQVVAEPESSSGRSFYLTCAAS*WHPPAS
Trigger: GCTGGCGGGAGGATGCCATCAACTGGCAGCGCACGT...CAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp AGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGGGGGCACCTTTGCGGCTaGGTGTGGCCCACATGCCTC +
Preference number: 4 (lower is better)
Translates to: SLNQAQDAASTCCTKTRWGHLCG*VWPTCL
Trigger: GAGGCATGTGGGCCACACGCAGCCGCAAAGGTGCCC...CCACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS-3UTR CCA 90 bp CCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTAGGGACCAGCCACAGTTCGGGGAGGTaGAGCTCGCCCCAAGAAGAG +
Preference number: 4 (lower is better)
Translates to: PATSATYLQSQRRLLGTSHSSGR*SSPQEE
Trigger: CTCTTCTTGGGGCGAGCTCCACCTCCCCGAACTGTG...GCTGGTCCCTAAAAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp AGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCCCTCCCTGGCTGGTCTaGGCCCTGACTGGGGGCTTT +
Preference number: 4 (lower is better)
Translates to: RWWQSLNQAQDAASTCCTPPWLV*ALTGGF
Trigger: AAAGCCCCCAGTCAGGGCCCAGACCAGCCAGGGAGG...GGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp CTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGGCCCAGAGGGCAGCCTCTCCTGGCAGCTGTaGCCTGGATACCTGAGACAA +
Preference number: 4 (lower is better)
Translates to: LRTQLLPAAPRPGGPEGSLSWQL*PGYLRQ
Trigger: TTGTCTCAGGTATCCAGGCCACAGCTGCCAGGAGAG...GCTGCCCTCTGGGCCACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp AGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCTGTGGCCTCATCACCTaGGGCCCCATCCTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: RWWQSLNQAQDAASTCCTCGLIT*GPILLP
Trigger: GGGGAGGAGGATGGGGCCCCAGGTGATGAGGCCACA...GGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp GAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTAGGGACCAGCACAGGTGGAGGCCGGCAGAGCTCTaGGCGACTGTCTGGGTGGAT +
Preference number: 4 (lower is better)
Translates to: ERHLSAVPEEAFRDQHRWRPAEL*ATVWVD
Trigger: ATCCACCCAGACAGTCGCCCAGAGCTCTGCCGGCCT...CCACCTGTGCTGGTCCCTAAAAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS-3UTR TCA 90 bp GCTTTTAGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGGGGTGTCTGGTGGGTaGGGTTCAGTGGGGGTGGCT +
Preference number: 4 (lower is better)
Translates to: AFRDQHRWWQSLNQAQDAGVSGG*GSVGVA
Trigger: AGCCACCCCCACTGAACCTCACCCACCAGACACCCC...TGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAAAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp GACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGGGTCACGTACACCTTTaGAGGCGACTTCTCCACAGT +
Preference number: 4 (lower is better)
Translates to: DQGACPATSATYLQSQRRGHVHL*RRLLHS
Trigger: ACTGTGGAGAAGTCGCCTTCAAAGGTGTACGTGACC...CCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp TTTAGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTCGCACCAGGCTCCGGTaGACATACGTGAGCCACGCG +
Preference number: 4 (lower is better)
Translates to: FRDQHRWWQSLNQAQDAARTRLR*TYVSHA
Trigger: CGCGTGGCTCACGTATGTGCACCGGAGCCTGGTGCG...AGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp CACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTAGGGACCAGCACAGGGTGGGTGAGGTTCAGTaGGGGTGGCTTCCTAGGTCC +
Preference number: 4 (lower is better)
Translates to: HERHLSAVPEEAFRDQHRVGEVQ*GWLPRS
Trigger: GGACCTAGGAAGCCACCCCCACTGAACCTCACCCAC...CCTGTGCTGGTCCCTAAAAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp AATTTCACAGAAATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACGTGGAGGCTGCTGGGGTaGGGGTCCTGTGGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: NFTEIIRGCGDQGACPATWRLLG*GSCGSA
Trigger: AGCAGAGCCACAGGACCCCCACCCCAGCAGCCTCCA...CGTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTTCTGTGAAATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp GGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGCACTTCCACATGGTCTaGACCCTTGTCATCTTGCTT +
Preference number: 4 (lower is better)
Translates to: GDQGACPATSATYLQSQRHFHMV*TLVILL
Trigger: AAGCAAGATGACAAGGGTTCAGACCATGTGGAAGTG...CCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp GGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGGCCCAGAGGGCAGCTAGGTTGTCTGTCTCCATGTaGGTGAGACGGGTATGGTCA +
Preference number: 4 (lower is better)
Translates to: GRSFYLLHQDPVAQRAARLSVSM*VRRVWS
Trigger: TGACCATACCCGTCTCACTCACATGGAGACAGACAA...CCTAGCTGCCCTCTGGGCCACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp AAATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTGGAAGTCATCTGGGTTaGGGAAGAGGAAGGCTCTAC +
Preference number: 4 (lower is better)
Translates to: KSSGGVGTKVPALPRAPPGSHLG*GRGRLY
Trigger: GTAGAGCCTTCCTCTTCCTCAACCCAGATGACTTCC...AGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp CAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTCCTCACTGTCTTCTaGTGTGGCCTCATCACCTGG +
Preference number: 4 (lower is better)
Translates to: QGACPATSATYLQSQRRLFLTVF*CGLITW
Trigger: CCAGGTGATGAGGCCACATCAGAAGACAGTGAGGAA...AAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp GGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGACAGTCCTCAAACACGTaGAGGTTCACCTGTCCTTTG +
Preference number: 4 (lower is better)
Translates to: GTKVPALPRAPPICSPRGQSSNT*RFTCPL
Trigger: CAAAGGACAGGTGAACCTGCACGTGTTTGAGGACTG...TCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp AATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGGCCCAGACATGGGGGTGTCTGGTaGGTGAGGTTCAGTGGGGGT +
Preference number: 4 (lower is better)
Translates to: NQAQDAASTCCTKTRWPRHGGVW*VRFSGG
Trigger: ACCCCCACTGAACCTCACCCACCAGACACCCCCATG...TCTGGGCCACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp TTTAGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTGGTATCCCTGGGGTCTaGGTGCAGCATGTCGGCGCT +
Preference number: 4 (lower is better)
Translates to: FRDQHRWWQSLNQAQDAAGIPGV*VQHVGA
Trigger: AGCGCCGACATGCTGCACCCAGACCCCAGGGATACC...AGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp CCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTAGGGACCAGCGTCCAGGTCGGACCCTaGTCACGTACACCTTTGAAG +
Preference number: 4 (lower is better)
Translates to: PATSATYLQSQRRLLGTSVQVGP*SRTPLK
Trigger: CTTCAAAGGTGTACGTGACCAGGGTCCGACCTGGAC...GCTGGTCCCTAAAAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp CCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTAGGGACCAGCTTCTTCACCCTCTCCTaGCAGCTGTGGCCTGGATAC +
Preference number: 4 (lower is better)
Translates to: PATSATYLQSQRRLLGTSFFTLS*QLWPGY
Trigger: GTATCCAGGCCACAGCTGCCAGGAGAGGGTGAAGAA...GCTGGTCCCTAAAAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp GTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCAAGACGGGGCTTTAGTTCTGTaGCCTTGGGGCCACTGGTCC +
Preference number: 4 (lower is better)
Translates to: VAEPESSSGRSFYLLHQDGALVL*PWGHWS
Trigger: GGACCAGTGGCCCCAAGGTCACAGAACTAAAGCCCC...GTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp AGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTGGAAAGAGTGGGAAGTaGAGATTCCGTCTCAGGTGG +
Preference number: 4 (lower is better)
Translates to: RCLPCHERHLSAVPEEAFGKSGK*RFRLRW
Trigger: CCACCTGAGACGGAATCTGCACTTCCCACTCTTTCC...AAAAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp CCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGACGCTGAACGTGCGCTaGCAGTTGATGGCATCCTCC +
Preference number: 4 (lower is better)
Translates to: PAQVVAEPESSSGRSFYLTLNVR*QLMASS
Trigger: GGAGGATGCCATCAACTGGCAGCGCACGTTCAGCGT...CAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGG
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp GAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGGAGAAGCGCCCGCCATaGTTTGCATTTAGCCGCTCC +
Preference number: 4 (lower is better)
Translates to: EPESSSGRSFYLLHQDPVEKRPP*FAFSRS
Trigger: GGAGCGGCTAAATGCAAAGCATGGCGGGCGCTTCTC...CACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp AGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTCTCCCTCCGCGCTCTTaGAATTCCAGTTCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: RDQHRWWQSLNQAQDAASLPPRS*NSSSRR
Trigger: CCTCCTGGAACTGGAATTGCAAGAGCGCGGAGGGAG...AGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp GAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTAGGGACCAGCACAGGTGGCAGCGCGGTCATATCTaGCAGGAACTGCACTACCCA +
Preference number: 4 (lower is better)
Translates to: ERHLSAVPEEAFRDQHRWQRGHI*QELHYP
Trigger: TGGGTAGTGCAGTTCCTGGCAGATATGACCGCGCTG...CCACCTGTGCTGGTCCCTAAAAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS-3UTR CCA 90 bp CCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGAAGCTGGGCGGCTGCTaGGCTCTCATCCAAACTCAG +
Preference number: 4 (lower is better)
Translates to: PAQVVAEPESSSGRSFYLKLGGC*ALIQTQ
Trigger: CTGAGTTTGGATGAGAGCCCAGCAGCCGCCCAGCTT...CAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp AGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTTCCTATGTGGCTGGCTaGAGACTGAGGCACATGGGC +
Preference number: 4 (lower is better)
Translates to: RDQHRWWQSLNQAQDAASSYVAG*RLRHMG
Trigger: GCCCATGTGCCTCAGTCTCCAGCCAGCCACATAGGA...AGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp CAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTATCCAGGAAGTCATCTaGGTTGAGGAAGAGGAAGGC +
Preference number: 4 (lower is better)
Translates to: QGACPATSATYLQSQRRLIQEVI*VEEEEG
Trigger: GCCTTCCTCTTCCTCAACCCAGATGACTTCCTGGAT...AAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp AGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTCACTGTCTTCTGATGTaGCCTCATCACCTGGGGCCC +
Preference number: 4 (lower is better)
Translates to: RDQHRWWQSLNQAQDAASHCLLM*PHHLGP
Trigger: GGGCCCCAGGTGATGAGGCCACATCAGAAGACAGTG...AGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp AATTTCACAGAAATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACGTCCTCGCCTCCCCACTaGTCACGGAACTCCTCAGTG +
Preference number: 4 (lower is better)
Translates to: NFTEIIRGCGDQGACPATSSPPH*SRNSSV
Trigger: CACTGAGGAGTTCCGTGACCAGTGGGGAGGCGAGGA...CGTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTTCTGTGAAATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp GCTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGGCCCAGAGGGCAGTGTGAGCAGAATCAATaGTCTCGAACTTCAGACCAG +
Preference number: 4 (lower is better)
Translates to: AQDAASTCCTKTRWPRGQCEQNQ*SRTSDQ
Trigger: CTGGTCTGAAGTTCGAGATCATTGATTCTGCTCACA...CTGCCCTCTGGGCCACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp ACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCGTGTACAGGGAAATGTaGGCAGAATCAATGATCTCG +
Preference number: 4 (lower is better)
Translates to: TKVPALPRAPPICSPRGGVYREM*AESMIS
Trigger: CGAGATCATTGATTCTGCTCACATTTCCCTGTACAC...GCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp TTTAGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTGGGGTCCTGTGGCTCTaGTGTACAGATGCATCGGTG +
Preference number: 4 (lower is better)
Translates to: FRDQHRWWQSLNQAQDAAGVLWL*CTDASV
Trigger: CACCGATGCATCTGTACAGCAGAGCCACAGGACCCC...AGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp CAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGCGTGTGGCCCACATaGCTCGCTTCGAGTGATAGT +
Preference number: 4 (lower is better)
Translates to: QSLNQAQDAASTCCTKTRCVWPT*LASSDS
Trigger: ACTATCACTCGAAGCGAGGCATGTGGGCCACACGCA...CCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS-3UTR CCA 90 bp CACAGAAATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCAACCCACTTCCACATaGTCTGAACCCTTGTCATCT +
Preference number: 4 (lower is better)
Translates to: HRNHQGVWGPRCLPCHERQPTST*SEPLSS
Trigger: AGATGACAAGGGTTCAGACCATGTGGAAGTGGGTTG...GCGCTCGTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTTCTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp GAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTAGGGACCAGCACAGGTGGGGCACATGGGCCACATaGTCCATCTTCAGAGATGAC +
Preference number: 4 (lower is better)
Translates to: ERHLSAVPEEAFRDQHRWGTWAT*SIFRDD
Trigger: GTCATCTCTGAAGATGGACCATGTGGCCCATGTGCC...CCACCTGTGCTGGTCCCTAAAAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp GAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGGGAAGAAGGTATCCCTaGGGTCTGGGTGCAGCATGT +
Preference number: 4 (lower is better)
Translates to: EPESSSGRSFYLLHQDPVGRRYP*GLGAAC
Trigger: ACATGCTGCACCCAGACCCCAGGGATACCTTCTTCC...CACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp CCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTAGGGACCAGCGTCCAGGATATTAGGTaGGAAGTGGATGTGCAGGTC +
Preference number: 4 (lower is better)
Translates to: PATSATYLQSQRRLLGTSVQDIR*EVDVQV
Trigger: GACCTGCACATCCACTTCCCACCTAATATCCTGGAC...GCTGGTCCCTAAAAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp CCAGAGGAGGCTTTTAGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGCGCGGTCATATCTaGCAGGAACTGCACTACCCA +
Preference number: 4 (lower is better)
Translates to: PEEAFRDQHRWWQSLNQAQRGHI*QELHYP
Trigger: TGGGTAGTGCAGTTCCTGGCAGATATGACCGCGCTG...AGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAAAGCCTCCTCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS-3UTR TCA 90 bp AATTTCACAGAAATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACGACCGTAGTACGAGTGTaGGGAAAGAGTGGGAAGTGC +
Preference number: 4 (lower is better)
Translates to: NFTEIIRGCGDQGACPATTVVRV*GKSGKC
Trigger: GCACTTCCCACTCTTTCCTCACACTCGTACTACGGT...CGTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTTCTGTGAAATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp AAATTTCACAGAAATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACGCAGCTTCATCTGCTTaGGGACCTTCTTCACCGGGA +
Preference number: 4 (lower is better)
Translates to: KFHRNHQGVWGPRCLPCHAASSA*GPSSPG
Trigger: TCCCGGTGAAGAAGGTCCGCAAGCAGATGAAGCTGC...GTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTTCTGTGAAATTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp GTCCCAGAGGAGGCTTTTAGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAATCCTCCTATGTGGCTaGCTGGAGACTGAGGCACAT +
Preference number: 4 (lower is better)
Translates to: VPEEAFRDQHRWWQSLNQILLCG*LETEAH
Trigger: ATGTGCCTCAGTCTCCAGCCAGCCACATAGGAGGAT...TTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAAAGCCTCCTCTGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp AGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCGTCCATCTTCAGAGATaGCTCATCTGTGTACAGGGA +
Preference number: 4 (lower is better)
Translates to: RWWQSLNQAQDAASTCCTVHLQR*LICVQG
Trigger: TCCCTGTACACAGATGAGTCATCTCTGAAGATGGAC...GGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp AAATTTCACAGAAATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACCTGTCTCCATGTGAGTaGGACGGGTATGGTCATTGG +
Preference number: 4 (lower is better)
Translates to: KFHRNHQGVWGPRCLPCHLSPCE*DGYGHW
Trigger: CCAATGACCATACCCGTCTCACTCACATGGAGACAG...GTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTTCTGTGAAATTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp AATTTCACAGAAATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACGAGGCTGTGTTTCCACTaGGGAGTTCAAGTCCACTGT +
Preference number: 4 (lower is better)
Translates to: NFTEIIRGCGDQGACPATRLCFH*GVQVHC
Trigger: ACAGTGGACTTGAACTCCTCAGTGGAAACACAGCCT...CGTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTTCTGTGAAATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp AAATTTCACAGAAATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACTGTGGCCTGGATACCTaGGACAAGCTCAGGAAGGAA +
Preference number: 4 (lower is better)
Translates to: KFHRNHQGVWGPRCLPCHCGLDT*DKLRKE
Trigger: TTCCTTCCTGAGCTTGTCTCAGGTATCCAGGCCACA...GTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTTCTGTGAAATTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp AAATTTCACAGAAATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACACTCGGAGCCAGTCTTaGCCACAAAGGCTACAAGCT +
Preference number: 4 (lower is better)
Translates to: KFHRNHQGVWGPRCLPCHTRSQS*PQRLQA
Trigger: AGCTTGTAGCCTTTGTGGGCAAGACTGGCTCCGAGT...GTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTTCTGTGAAATTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp TTTAGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTCGTGGCTTAGACACCTaGGAGCTGAACTTGGTGAAT +
Preference number: 4 (lower is better)
Translates to: FRDQHRWWQSLNQAQDAARGLDT*ELNLVN
Trigger: ATTCACCAAGTTCAGCTCCCAGGTGTCTAAGCCACG...AGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp CACAGAAATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCGCCTGATTCTTCACTaGTACAATGAAATGAACCAT +
Preference number: 4 (lower is better)
Translates to: HRNHQGVWGPRCLPCHERRLILH*YNEMNH
Trigger: ATGGTTCATTTCATTGTACCAGTGAAGAATCAGGCG...GCGCTCGTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTTCTGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS-3UTR CCA 90 bp CCAGAGGAGGCTTTTAGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTAGTGTGAGGAAAGAGTaGGAAGTGCAGATTCCGTCT +
Preference number: 4 (lower is better)
Translates to: PEEAFRDQHRWWQSLNQASVRKE*EVQIPS
Trigger: AGACGGAATCTGCACTTCCCACTCTTTCCTCACACT...AGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAAAGCCTCCTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp GCTTTTAGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGTCTCCATCTCTGGCTaGGTGGATGAAGCCAAAAAT +
Preference number: 4 (lower is better)
Translates to: AFRDQHRWWQSLNQAQDAVSISG*VDEAKN
Trigger: ATTTTTGGCTTCATCCACCCAGCCAGAGATGGAGAC...TGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAAAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp CCAGAGGAGGCTTTTAGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTACTCCTCAGTGTTCATaGCTCCTACTCTGTCAAAGT +
Preference number: 4 (lower is better)
Translates to: PEEAFRDQHRWWQSLNQATPQCS*LLLCQS
Trigger: ACTTTGACAGAGTAGGAGGCATGAACACTGAGGAGT...AGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAAAGCCTCCTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp CCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGACAAACTGTAGTCCTTaGTATCTGGCTATGGGGAAA +
Preference number: 4 (lower is better)
Translates to: PAQVVAEPESSSGRSFYLTNCSP*YLAMGK
Trigger: TTTCCCCATAGCCAGATACCAAGGACTACAGTTTGT...CAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp CACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTAGGGACCAGCACAGGCGCCTGATTCTTCACTaGTACAATGAAATGAACCAT +
Preference number: 4 (lower is better)
Translates to: HERHLSAVPEEAFRDQHRRLILH*YNEMNH
Trigger: ATGGTTCATTTCATTGTACCAGTGAAGAATCAGGCG...CCTGTGCTGGTCCCTAAAAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS-3UTR TCA 90 bp AGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCTACTCTGTCAAAGTCTaGTTTGTAGATCCCAAAGAG +
Preference number: 4 (lower is better)
Translates to: RWWQSLNQAQDAASTCCTYSVKV*FVDPKE
Trigger: CTCTTTGGGATCTACAAATCAGACTTTGACAGAGTA...GGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp GTAAATTCTGAAAACAATGTCGTCGCTACGGAAAATTTCACAGAAATCATCAGGTGGCTGTCGTTCCAGTaGAGGCTGCTGGGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: VNSENNVVATENFTEIIRWLSFQ*RLLGWG
Trigger: CCCCCACCCCAGCAGCCTCCACTGGAACGACAGCCA...CCTGATGATTTCTGTGAAATTTTCCGTAGCGACGACATTGTTTTCAGAATTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp GTAAATTCTGAAAACAATGTCGTCGCTACGGAAAATTTCACAGAAATCATCAGGGGGGTGGGGGTCCTGTaGCTCTGCTGTACAGATGCA +
Preference number: 4 (lower is better)
Translates to: VNSENNVVATENFTEIIRGVGVL*LCCTDA
Trigger: TGCATCTGTACAGCAGAGCCACAGGACCCCCACCCC...CCTGATGATTTCTGTGAAATTTTCCGTAGCGACGACATTGTTTTCAGAATTTAC
47% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp GTAAATTCTGAAAACAATGTCGTCGCTACGGAAAATTTCACAGAAATCATCAGGACAAAGGCTACAAGCTaGGCGGCTGCTGGGCTCTCA +
Preference number: 4 (lower is better)
Translates to: VNSENNVVATENFTEIIRTKATS*AAAGLS
Trigger: TGAGAGCCCAGCAGCCGCCCAGCTTGTAGCCTTTGT...CCTGATGATTTCTGTGAAATTTTCCGTAGCGACGACATTGTTTTCAGAATTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR TCA 90 bp AACAGAACAGACAGAACTCTTGTAAATTCTGAAAACAATGTCGTCGCTACGGAACTATGGGGAAATCCTTaGGGATATAGGTGGGGGCAT +
Preference number: 4 (lower is better)
Translates to: NRTDRTLVNSENNVVATELWGNP*GYRWGH
Trigger: ATGCCCCCACCTATATCCTCAAGGATTTCCCCATAG...TTCCGTAGCGACGACATTGTTTTCAGAATTTACAAGAGTTCTGTCTGTTCTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp CTTGTAAATTCTGAAAACAATGTCGTCGCTACGGAAAATTTCACAGAAATCATCTCTCCACGTTCACGATaGGTAGAAGCGAGAAGCGCC +
Preference number: 4 (lower is better)
Translates to: LVNSENNVVATENFTEIISPRSR*VEARSA
Trigger: GGCGCTTCTCGCTTCTACGCATCGTGAACGTGGAGA...GATGATTTCTGTGAAATTTTCCGTAGCGACGACATTGTTTTCAGAATTTACAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CCA 90 bp CTTGTAAATTCTGAAAACAATGTCGTCGCTACGGAAAATTTCACAGAAATCATCCTGGCAGCTGTGGCCTaGATACCTGAGACAAGCTCA +
Preference number: 4 (lower is better)
Translates to: LVNSENNVVATENFTEIILAAVA*IPETSS
Trigger: TGAGCTTGTCTCAGGTATCCAGGCCACAGCTGCCAG...GATGATTTCTGTGAAATTTTCCGTAGCGACGACATTGTTTTCAGAATTTACAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR GCA 90 bp GTAAATTCTGAAAACAATGTCGTCGCTACGGAAAATTTCACAGAAATCATCAGGGAACCCTTGTCATCTTaGTTGTGGAGCAGTTCAAAG +
Preference number: 4 (lower is better)
Translates to: VNSENNVVATENFTEIIREPLSS*LWSSSK
Trigger: CTTTGAACTGCTCCACAAGCAAGATGACAAGGGTTC...CCTGATGATTTCTGTGAAATTTTCCGTAGCGACGACATTGTTTTCAGAATTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 90 bp GAGCGCAGGAGCTCGAAGTCCATGGCGCCCACGCTGAACGTGCGCTaGCAGTTGATGGCATCCTCCCGCCAGCGACCCAGGGGCCGCCCA +
Preference number: 5 (lower is better)
Translates to: ERRSSKSMAPTLNVR*QLMASSRQRPRGRP
Trigger: TGGGCGGCCCCTGGGTCGCTGGCGGGAGGATGCCATCAACTGGCAGCGCACGTTCAGCGTGGGCGCCATGGACTTCGAGCTCCTGCGCTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp AGCCCTGGGTCCGAGGTGGATGTGGGGGTACCCGCAGCTGTACTCTaGGCAGAGGCTTGGGGCGCAGGAAGACGCCAGGGAAGGGTGGCC +
Preference number: 5 (lower is better)
Translates to: SPGSEVDVGVPAAVL*AEAWGAGRRQGRVA
Trigger: GGCCACCCTTCCCTGGCGTCTTCCTGCGCCCCAAGCCTCTGCCCAGAGTACAGCTGCGGGTACCCCCACATCCACCTCGGACCCAGGGCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp AGGCCGGCAGAGCTCTGGGCGACTGTCTGGGTGGATCGAGGCGGCTaGAGGCGGCTCGGGACTTTCTCCATCTTCGTCCCCAACGCGGGC +
Preference number: 5 (lower is better)
Translates to: RPAELWATVWVDRGG*RRLGTFSIFVPNAG
Trigger: GCCCGCGTTGGGGACGAAGATGGAGAAAGTCCCGAGCCGCCTCCAGCCGCCTCGATCCACCCAGACAGTCGCCCAGAGCTCTGCCGGCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp CATGACATCCTGACGCCAGGCCAGATGCAAAGGCCGGCAGAGCTCTaGGCGACTGTCTGGGTGGATCGAGGCGGCTGGAGGCGGCTCGGG +
Preference number: 5 (lower is better)
Translates to: HDILTPGQMQRPAEL*ATVWVDRGGWRRLG
Trigger: CCCGAGCCGCCTCCAGCCGCCTCGATCCACCCAGACAGTCGCCCAGAGCTCTGCCGGCCTTTGCATCTGGCCTGGCGTCAGGATGTCATG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp ACGCCAGGCCAGATGCAAAGGCCGGCAGAGCTCTGGGCGACTGTCTaGGTGGATCGAGGCGGCTGGAGGCGGCTCGGGACTTTCTCCATC +
Preference number: 5 (lower is better)
Translates to: TPGQMQRPAELWATV*VDRGGWRRLGTFSI
Trigger: GATGGAGAAAGTCCCGAGCCGCCTCCAGCCGCCTCGATCCACCCAGACAGTCGCCCAGAGCTCTGCCGGCCTTTGCATCTGGCCTGGCGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp CAGGCCAGATGCAAAGGCCGGCAGAGCTCTGGGCGACTGTCTGGGTaGATCGAGGCGGCTGGAGGCGGCTCGGGACTTTCTCCATCTTCG +
Preference number: 5 (lower is better)
Translates to: QARCKGRQSSGRLSG*IEAAGGGSGLSPSS
Trigger: CGAAGATGGAGAAAGTCCCGAGCCGCCTCCAGCCGCCTCGATCCACCCAGACAGTCGCCCAGAGCTCTGCCGGCCTTTGCATCTGGCCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CAA 90 bp GCTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGGCCCAGAGGGCAGGGCATCCACTCCAGTTaGCAGGCCTGCAGAGCGCTC +
Preference number: 5 (lower is better)
Translates to: AQDAASTCCTKTRWPRGQGIHSS*QACRAL
Trigger: GAGCGCTCTGCAGGCCTGCAAACTGGAGTGGATGCC...CTGCCCTCTGGGCCACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp AGTCCCTGTCCATGTAACTGGCCCTCCCGGCCTCCCTGGCTGGTCTaGGCCCTGACTGGGGGCTTTAGTTCTGTGACCTTGGGGCCACTG +
Preference number: 5 (lower is better)
Translates to: SPCPCNWPSRPPWLV*ALTGGFSSVTLGPL
Trigger: CAGTGGCCCCAAGGTCACAGAACTAAAGCCCCCAGTCAGGGCCCAGACCAGCCAGGGAGGCCGGGAGGGCCAGTTACATGGACAGGGACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CAA 90 bp GGGGACCAAGGTGCCTGCCCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGCAGCTTCATCTGCTaGCGGACCTTCTTCACCGGG +
Preference number: 5 (lower is better)
Translates to: GDQGACPATSATYLQSQRSSFIC*RTFFTG
Trigger: CCCGGTGAAGAAGGTCCGCAAGCAGATGAAGCTGCT...CCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGGGCAGGCACCTTGGTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CAA 90 bp CACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTAGGGACCAGCACAGGCAGGAAACAGCATGTTaGGGCCCCGCCCCTCGGGCG +
Preference number: 5 (lower is better)
Translates to: HERHLSAVPEEAFRDQHRQETAC*GPAPRA
Trigger: CGCCCGAGGGGCGGGGCCCAAACATGCTGTTTCCTG...CCTGTGCTGGTCCCTAAAAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 90 bp AGGAAGACGTATTCGGATAGGCGCTGGCGGCTCCCTCCGCGCTCTTaGAATTCCAGTTCCAGGAGGAAGCGGCTCCCGCGTGCAGAGTCG +
Preference number: 5 (lower is better)
Translates to: RKTYSDRRWRLPPRS*NSSSRRKRLPRAES
Trigger: CGACTCTGCACGCGGGAGCCGCTTCCTCCTGGAACTGGAATTGCAAGAGCGCGGAGGGAGCCGCCAGCGCCTATCCGAATACGTCTTCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp TGTCGGCGCTGGGTTCCCCCTGCGGCGGGAATCCTCCTATGTGGCTaGCTGGAGACTGAGGCACATGGGCCACATGGTCCATCTTCAGAG +
Preference number: 5 (lower is better)
Translates to: CRRWVPPAAGILLCG*LETEAHGPHGPSSE
Trigger: CTCTGAAGATGGACCATGTGGCCCATGTGCCTCAGTCTCCAGCCAGCCACATAGGAGGATTCCCGCCGCAGGGGGAACCCAGCGCCGACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp CAAAGGTTCCATCCGAGGAGTGAGGAAGAAGGTATCCCTGGGGTCTaGGTGCAGCATGTCGGCGCTGGGTTCCCCCTGCGGCGGGAATCC +
Preference number: 5 (lower is better)
Translates to: QRFHPRSEEEGIPGV*VQHVGAGFPLRRES
Trigger: GGATTCCCGCCGCAGGGGGAACCCAGCGCCGACATGCTGCACCCAGACCCCAGGGATACCTTCTTCCTCACTCCTCGGATGGAACCTTTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp TTCTGTGACCTTGGGGCCACTGGTCCTATAGCCCTGGGTCCGAGGTaGATGTGGGGGTACCCGCAGCTGTACTCTGGGCAGAGGCTTGGG +
Preference number: 5 (lower is better)
Translates to: FCDLGATGPIALGPR*MWGYPQLYSGQRLG
Trigger: CCCAAGCCTCTGCCCAGAGTACAGCTGCGGGTACCCCCACATCCACCTCGGACCCAGGGCTATAGGACCAGTGGCCCCAAGGTCACAGAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp GGCACCATGAGTCCCTGTCCATGTAACTGGCCCTCCCGGCCTCCCTaGCTGGTCTGGGCCCTGACTGGGGGCTTTAGTTCTGTGACCTTG +
Preference number: 5 (lower is better)
Translates to: GTMSPCPCNWPSRPP*LVWALTGGFSSVTL
Trigger: CAAGGTCACAGAACTAAAGCCCCCAGTCAGGGCCCAGACCAGCCAGGGAGGCCGGGAGGGCCAGTTACATGGACAGGGACTCATGGTGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp AGTCTCGCAATGCCCTCGGGGAAGCCCGCTGTCCAGGTCGGACCCTaGTCACGTACACCTTTGAAGGCGACTTCTCCACAGTTCGGGGAG +
Preference number: 5 (lower is better)
Translates to: SLAMPSGKPAVQVGP*SRTPLKATSPQFGE
Trigger: CTCCCCGAACTGTGGAGAAGTCGCCTTCAAAGGTGTACGTGACCAGGGTCCGACCTGGACAGCGGGCTTCCCCGAGGGCATTGCGAGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CAA 90 bp CCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTAGGGACCAGCGCTCCCTCCGCGCTCTaGCAATTCCAGTTCCAGGAG +
Preference number: 5 (lower is better)
Translates to: PATSATYLQSQRRLLGTSAPSAL*QFQFQE
Trigger: CTCCTGGAACTGGAATTGCAAGAGCGCGGAGGGAGC...GCTGGTCCCTAAAAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS TCA 90 bp AACAGCATGTTTGGGCCCCGCCCCTCGGGCGCCTGCTCCTCTTCATaGCTTTCACTCGAGTCCTCCGACCTCTGTGTGGACGATGGCACT +
Preference number: 5 (lower is better)
Translates to: NSMFGPRPSGACSSS*LSLESSDLCVDDGT
Trigger: AGTGCCATCGTCCACACAGAGGTCGGAGGACTCGAGTGAAAGTCATGAAGAGGAGCAGGCGCCCGAGGGGCGGGGCCCAAACATGCTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp GGTGCGGTCCACTCGGAGCCAGTCTTGCCCACAAAGGCTACAAGCTaGGCGGCTGCTGGGCTCTCATCCAAACTCAGCCAGAACTCAGAG +
Preference number: 5 (lower is better)
Translates to: GAVHSEPVLPTKATS*AAAGLSSKLSQNSE
Trigger: CTCTGAGTTCTGGCTGAGTTTGGATGAGAGCCCAGCAGCCGCCCAGCTTGTAGCCTTTGTGGGCAAGACTGGCTCCGAGTGGACCGCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CAA 90 bp GAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGAACGTGCGCTGCCAGTaGATGGCATCCTCCCGCCAG +
Preference number: 5 (lower is better)
Translates to: EPESSSGRSFYLLHQDPVNVRCQ*MASSRQ
Trigger: CTGGCGGGAGGATGCCATCAACTGGCAGCGCACGTT...CACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CAA 90 bp GAGGCTTTTAGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGGGGCGAAGGCCAGCTaGCCCTCCACGCAATGCTTG +
Preference number: 5 (lower is better)
Translates to: EAFRDQHRWWQSLNQAQDGAKAS*PSTQCL
Trigger: CAAGCATTGCGTGGAGGGCAAGCTGGCCTTCGCCCC...GTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAAAGCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 90 bp CGTCTCAGGTGGCCCACAGCACCTCCACACCAGTCCTCAAACACGTaGAGGTTCACCTGTCCTTTGAACTCTTCCCGCCATGGGGGTGTC +
Preference number: 5 (lower is better)
Translates to: RLRWPTAPPHQSSNT*RFTCPLNSSRHGGV
Trigger: GACACCCCCATGGCGGGAAGAGTTCAAAGGACAGGTGAACCTGCACGTGTTTGAGGACTGGTGTGGAGGTGCTGTGGGCCACCTGAGACG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp CCTGCTCCTCTTCATGACTTTCACTCGAGTCCTCCGACCTCTGTGTaGACGATGGCACTCGGACTCCGCGGCTATCGGTCACACCGGTCA +
Preference number: 5 (lower is better)
Translates to: PAPLHDFHSSPPTSV*TMALGLRGYRSHRS
Trigger: TGACCGGTGTGACCGATAGCCGCGGAGTCCGAGTGCCATCGTCCACACAGAGGTCGGAGGACTCGAGTGAAAGTCATGAAGAGGAGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp TGCAGGTTCACCTGTCCTTTGAACTCTTCCCGCCATGGGGGTGTCTaGTGGGTGAGGTTCAGTGGGGGTGGCTTCCTAGGTCCTCCAGGA +
Preference number: 5 (lower is better)
Translates to: CRFTCPLNSSRHGGV*WVRFSGGGFLGPPG
Trigger: TCCTGGAGGACCTAGGAAGCCACCCCCACTGAACCTCACCCACCAGACACCCCCATGGCGGGAAGAGTTCAAAGGACAGGTGAACCTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CAA 90 bp CACAGAAATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACGAGCGCAGCCAGAACTCAGAGTaGTCATCCGAAGCCACAGAG +
Preference number: 5 (lower is better)
Translates to: HRNHQGVWGPRCLPCHERSQNSE*SSEATE
Trigger: CTCTGTGGCTTCGGATGACAACTCTGAGTTCTGGCT...GCGCTCGTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTTCTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CAA 90 bp ATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGGCCCAGAGCCCTCCACGCAATGCTaGCGGATGCTGTCCAGGATA +
Preference number: 5 (lower is better)
Translates to: IKLRTQLLPAAPRPGGPEPSTQC*RMLSRI
Trigger: TATCCTGGACAGCATCCGCAAGCATTGCGTGGAGGG...CTCTGGGCCACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp CTCTTCATGACTTTCACTCGAGTCCTCCGACCTCTGTGTGGACGATaGCACTCGGACTCCGCGGCTATCGGTCACACCGGTCAGCTTCTC +
Preference number: 5 (lower is better)
Translates to: LFMTFTRVLRPLCGR*HSDSAAIGHTGQLL
Trigger: GAGAAGCTGACCGGTGTGACCGATAGCCGCGGAGTCCGAGTGCCATCGTCCACACAGAGGTCGGAGGACTCGAGTGAAAGTCATGAAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp TTTGAACTCTTCCCGCCATGGGGGTGTCTGGTGGGTGAGGTTCAGTaGGGGTGGCTTCCTAGGTCCTCCAGGAAACAGCATGTTTGGGCC +
Preference number: 5 (lower is better)
Translates to: FELFPPWGCLVGEVQ*GWLPRSSRKQHVWA
Trigger: GGCCCAAACATGCTGTTTCCTGGAGGACCTAGGAAGCCACCCCCACTGAACCTCACCCACCAGACACCCCCATGGCGGGAAGAGTTCAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp AGGTTCACCTGTCCTTTGAACTCTTCCCGCCATGGGGGTGTCTGGTaGGTGAGGTTCAGTGGGGGTGGCTTCCTAGGTCCTCCAGGAAAC +
Preference number: 5 (lower is better)
Translates to: RFTCPLNSSRHGGVW*VRFSGGGFLGPPGN
Trigger: GTTTCCTGGAGGACCTAGGAAGCCACCCCCACTGAACCTCACCCACCAGACACCCCCATGGCGGGAAGAGTTCAAAGGACAGGTGAACCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CAA 90 bp CCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGCACTCGGAGCCAGTCTaGCCCACAAAGGCTACAAGC +
Preference number: 5 (lower is better)
Translates to: PAQVVAEPESSSGRSFYLHSEPV*PTKATS
Trigger: GCTTGTAGCCTTTGTGGGCAAGACTGGCTCCGAGTG...CAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CAA 90 bp CCTGCCACGAGCGCCACCTATCTGCAGTCCCAGAGGAGGCTTTTAGGGACCAGCTGGTCACGTACACCTTaGAAGGCGACTTCTCCACAG +
Preference number: 5 (lower is better)
Translates to: PATSATYLQSQRRLLGTSWSRTP*KATSPQ
Trigger: CTGTGGAGAAGTCGCCTTCAAAGGTGTACGTGACCA...GCTGGTCCCTAAAAGCCTCCTCTGGGACTGCAGATAGGTGGCGCTCGTGGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS TCA 90 bp AGCGAGAAGCGCCCGCCATGCTTTGCATTTAGCCGCTCCATGTACTaGGCCACTACATCCACCGCTTCGGCCTCAGGAAGTTGCAGGTTC +
Preference number: 5 (lower is better)
Translates to: SEKRPPCFAFSRSMY*ATTSTASASGSCRF
Trigger: GAACCTGCAACTTCCTGAGGCCGAAGCGGTGGATGTAGTGGCTCAGTACATGGAGCGGCTAAATGCAAAGCATGGCGGGCGCTTCTCGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 90 bp GATGCTGCTGGGGTCCTCCACGGCATCCACTCCAGTTTGCAGGCCTaGAGAGCGCTCGAAGTTTCCAGTTCGTTTCAAGTACTGGTACCG +
Preference number: 5 (lower is better)
Translates to: DAAGVLHGIHSSLQA*RALEVSSSFQVLVP
Trigger: CGGTACCAGTACTTGAAACGAACTGGAAACTTCGAGCGCTCTGCAGGCCTGCAAACTGGAGTGGATGCCGTGGAGGACCCCAGCAGCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 90 bp CTCTCCACCAAGATGATGTTGAAGTACGAGTCCCCCGTATGCACATaGAGCGCGGTCATATCTGCCAGGAACTGCACTACCCAGCGCGCC +
Preference number: 5 (lower is better)
Translates to: LSTKMMLKYESPVCT*SAVISARNCTTQRA
Trigger: GGCGCGCTGGGTAGTGCAGTTCCTGGCAGATATGACCGCGCTGCATGTGCATACGGGGGACTCGTACTTCAACATCATCTTGGTGGAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000210517.2
CDS GCA 90 bp AAGTCCACCAAGATGATGTTGAAGTACGAGTCCCCCGTATGCACATaGAGCGCGGTCATATCTGCCAGGAACTGCACTACCCAGCGCGCC +
Preference number: 5 (lower is better)
Translates to: KSTKMMLKYESPVCT*SAVISARNCTTQRA
Trigger: GGCGCGCTGGGTAGTGCAGTTCCTGGCAGATATGACCGCGCTGCATGTGCATACGGGGGACTCGTACTTCAACATCATCTTGGTGGACTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CAA 90 bp ATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGGCCCAGAGAGGAAGTCATCTGGGTaGAGGAAGAGGAAGGCTCTA +
Preference number: 5 (lower is better)
Translates to: IKLRTQLLPAAPRPGGPERKSSG*RKRKAL
Trigger: TAGAGCCTTCCTCTTCCTCAACCCAGATGACTTCCT...CTCTGGGCCACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CAA 90 bp GAGGCTTTTAGGGACCAGCACAGGTGGTGGCAGAGCCTGAATCAAGCTCAGGACTTCGGCCTCAGGAAGTaGCAGGTTCCCGGATACGTT +
Preference number: 5 (lower is better)
Translates to: EAFRDQHRWWQSLNQAQDFGLRK*QVPGYV
Trigger: AACGTATCCGGGAACCTGCAACTTCCTGAGGCCGAA...GTCCTGAGCTTGATTCAGGCTCTGCCACCACCTGTGCTGGTCCCTAAAAGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CAA 90 bp CTGAATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGGCCCTCCACCAAGATGATGTaGAAGTACGAGTCCCCCGTA +
Preference number: 5 (lower is better)
Translates to: LNQAQDAASTCCTKTRWPSTKMM*KYESPV
Trigger: TACGGGGGACTCGTACTTCAACATCATCTTGGTGGA...GGGCCACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS GCA 90 bp AGGAAAACGATGCTGCTGGGGTCCTCCACGGCATCCACTCCAGTTTaGAGGCCTGCAGAGCGCTCGAAGTTTCCAGTTCGTTTCAAGTAC +
Preference number: 5 (lower is better)
Translates to: RKTMLLGSSTASTPV*RPAERSKFPVRFKY
Trigger: GTACTTGAAACGAACTGGAAACTTCGAGCGCTCTGCAGGCCTGCAAACTGGAGTGGATGCCGTGGAGGACCCCAGCAGCATCGTTTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 90 bp CGAAGCCTCTCCACCAAGATGATGTTGAAGTACGAGTCCCCCGTATaGACATGCAGCGCGGTCATATCTGCCAGGAACTGCACTACCCAG +
Preference number: 5 (lower is better)
Translates to: RSLSTKMMLKYESPV*TCSAVISARNCTTQ
Trigger: CTGGGTAGTGCAGTTCCTGGCAGATATGACCGCGCTGCATGTGCATACGGGGGACTCGTACTTCAACATCATCTTGGTGGAGAGGCTTCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000210517.2
CDS-3UTR CAA 90 bp AGCCTGAATCAAGCTCAGGACGCAGCTTCTACCTGCTGCACCAAGACCCGGTGGTCCACCAAGATGATGTaGAAGTACGAGTCCCCCGTA +
Preference number: 5 (lower is better)
Translates to: SLNQAQDAASTCCTKTRWSTKMM*KYESPV
Trigger: TACGGGGGACTCGTACTTCAACATCATCTTGGTGGA...CCACCGGGTCTTGGTGCAGCAGGTAGAAGCTGCGTCCTGAGCTTGATTCAGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS GCA 90 bp CCCAGTCCTCGCCTCCCCACTGGTCACGGAACTCCTCAGTGTTCATaGCTCCTACTCTGTCAAAGTCTGATTTGTAGATCCCAAAGAGGC +
Preference number: 5 (lower is better)
Translates to: PSPRLPTGHGTPQCS*LLLCQSLICRSQRG
Trigger: GCCTCTTTGGGATCTACAAATCAGACTTTGACAGAGTAGGAGGCATGAACACTGAGGAGTTCCGTGACCAGTGGGGAGGCGAGGACTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 90 bp CTCTCAAAGTCCACCAAGATGATGTTGAAGTACGAGTCCCCCGTATaGACATGCAGCGCGGTCATATCTGCCAGGAACTGCACTACCCAG +
Preference number: 5 (lower is better)
Translates to: LSKSTKMMLKYESPV*TCSAVISARNCTTQ
Trigger: CTGGGTAGTGCAGTTCCTGGCAGATATGACCGCGCTGCATGTGCATACGGGGGACTCGTACTTCAACATCATCTTGGTGGACTTTGAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS TCA 90 bp TTCCACTTAGGGGACACAGCTAACTTTGTCACCGTAGTACGAGTGTaGGGAAAGAGTGGGAAGTGCAGATTCCGTCTCAGGTGGCCCACA +
Preference number: 5 (lower is better)
Translates to: FHLGDTANFVTVVRV*GKSGKCRFRLRWPT
Trigger: TGTGGGCCACCTGAGACGGAATCTGCACTTCCCACTCTTTCCTCACACTCGTACTACGGTGACAAAGTTAGCTGTGTCCCCTAAGTGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 90 bp GTTGTCATCCGAAGCCACAGAGAACTGGATGTCTCCATCTCTGGCTaGGTGGATGAAGCCAAAAATCCGGAGTCCATAGTTCTTCCACTT +
Preference number: 5 (lower is better)
Translates to: VVIRSHRELDVSISG*VDEAKNPESIVLPL
Trigger: AAGTGGAAGAACTATGGACTCCGGATTTTTGGCTTCATCCACCCAGCCAGAGATGGAGACATCCAGTTCTCTGTGGCTTCGGATGACAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS-3UTR CAA 90 bp AAATTTCACAGAAATCATCAGGGGGTGTGGGGACCAAGGTGCCTGCCCTGCCACTCCTCTCCCTCCTCCTaGTCCATTTTCATGTATTTA +
Preference number: 5 (lower is better)
Translates to: KFHRNHQGVWGPRCLPCHSSPSS*SIFMYL
Trigger: TAAATACATGAAAATGGACAAGGAGGAGGGAGAGGA...GTGGCAGGGCAGGCACCTTGGTCCCCACACCCCCTGATGATTTCTGTGAAATTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS TCA 90 bp TCAGAGATGACTCATCTGTGTACAGGGAAATGTGAGCAGAATCAATaGTCTCGAACTTCAGACCAGGCAGGAAAGCTCGCCAACCCACTT +
Preference number: 5 (lower is better)
Translates to: SEMTHLCTGKCEQNQ*SRTSDQAGKLANPL
Trigger: AAGTGGGTTGGCGAGCTTTCCTGCCTGGTCTGAAGTTCGAGATCATTGATTCTGCTCACATTTCCCTGTACACAGATGAGTCATCTCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CAA 90 bp AGGAGCTCGAAGTCCATGGCGCCCACGCTGAACGTGCGCTGCCAGTaGATGGCATCCTCCCGCCAGCGACCCAGGGGCCGCCCAGCGGCC +
Preference number: 6 (lower is better)
Translates to: RSSKSMAPTLNVRCQ*MASSRQRPRGRPAA
Trigger: GGCCGCTGGGCGGCCCCTGGGTCGCTGGCGGGAGGATGCCATCAACTGGCAGCGCACGTTCAGCGTGGGCGCCATGGACTTCGAGCTCCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CAA 72 bp AAGTCCATGGCGCCCACGCTGAACGTGCGCTGCCAGTaGATGGCATCCTCCCGCCAGCGACCCAGGGGCCGC +
Preference number: 6 (lower is better)
Translates to: KSMAPTLNVRCQ*MASSRQRPRGR
Trigger: GCGGCCCCTGGGTCGCTGGCGGGAGGATGCCATCAACTGGCAGCGCACGTTCAGCGTGGGCGCCATGGACTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp CAGATGCAAAGGCCGGCAGAGCTCTGGGCGACTGTCTaGGTGGATCGAGGCGGCTGGAGGCGGCTCGGGACT +
Preference number: 6 (lower is better)
Translates to: QMQRPAELWATV*VDRGGWRRLGT
Trigger: AGTCCCGAGCCGCCTCCAGCCGCCTCGATCCACCCAGACAGTCGCCCAGAGCTCTGCCGGCCTTTGCATCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp CTGACGCCAGGCCAGATGCAAAGGCCGGCAGAGCTCTaGGCGACTGTCTGGGTGGATCGAGGCGGCTGGAGG +
Preference number: 6 (lower is better)
Translates to: LTPGQMQRPAEL*ATVWVDRGGWR
Trigger: CCTCCAGCCGCCTCGATCCACCCAGACAGTCGCCCAGAGCTCTGCCGGCCTTTGCATCTGGCCTGGCGTCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 72 bp AGCTCGAAGTCCATGGCGCCCACGCTGAACGTGCGCTaGCAGTTGATGGCATCCTCCCGCCAGCGACCCAGG +
Preference number: 6 (lower is better)
Translates to: SSKSMAPTLNVR*QLMASSRQRPR
Trigger: CCTGGGTCGCTGGCGGGAGGATGCCATCAACTGGCAGCGCACGTTCAGCGTGGGCGCCATGGACTTCGAGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp AGGTATCCCTGGGGTCTGGGTGCAGCATGTCGGCGCTaGGTTCCCCCTGCGGCGGGAATCCTCCTATGTGGC +
Preference number: 6 (lower is better)
Translates to: RYPWGLGAACRR*VPPAAGILLCG
Trigger: GCCACATAGGAGGATTCCCGCCGCAGGGGGAACCCAGCGCCGACATGCTGCACCCAGACCCCAGGGATACCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp TCCGAGGTGGATGTGGGGGTACCCGCAGCTGTACTCTaGGCAGAGGCTTGGGGCGCAGGAAGACGCCAGGGA +
Preference number: 6 (lower is better)
Translates to: SEVDVGVPAAVL*AEAWGAGRRQG
Trigger: TCCCTGGCGTCTTCCTGCGCCCCAAGCCTCTGCCCAGAGTACAGCTGCGGGTACCCCCACATCCACCTCGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp GAGCTCTGGGCGACTGTCTGGGTGGATCGAGGCGGCTaGAGGCGGCTCGGGACTTTCTCCATCTTCGTCCCC +
Preference number: 6 (lower is better)
Translates to: ELWATVWVDRGG*RRLGTFSIFVP
Trigger: GGGGACGAAGATGGAGAAAGTCCCGAGCCGCCTCCAGCCGCCTCGATCCACCCAGACAGTCGCCCAGAGCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp TGCAAAGGCCGGCAGAGCTCTGGGCGACTGTCTGGGTaGATCGAGGCGGCTGGAGGCGGCTCGGGACTTTCT +
Preference number: 6 (lower is better)
Translates to: CKGRQSSGRLSG*IEAAGGGSGLS
Trigger: AGAAAGTCCCGAGCCGCCTCCAGCCGCCTCGATCCACCCAGACAGTCGCCCAGAGCTCTGCCGGCCTTTGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp GGGTGGCTTCCTAGGTCCTCCAGGAAACAGCATGTTTaGGCCCCGCCCCTCGGGCGCCTGCTCCTCTTCATG +
Preference number: 6 (lower is better)
Translates to: GWLPRSSRKQHV*APPLGRLLLFM
Trigger: CATGAAGAGGAGCAGGCGCCCGAGGGGCGGGGCCCAAACATGCTGTTTCCTGGAGGACCTAGGAAGCCACCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp TCGGGCTGGCTGTCGTTCCAGTGGAGGCTGCTGGGGTaGGGGTCCTGTGGCTCTGCTGTACAGATGCATCGG +
Preference number: 6 (lower is better)
Translates to: SGWLSFQWRLLG*GSCGSAVQMHR
Trigger: CCGATGCATCTGTACAGCAGAGCCACAGGACCCCCACCCCAGCAGCCTCCACTGGAACGACAGCCAGCCCGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp CTTGGGGCCACTGGTCCTATAGCCCTGGGTCCGAGGTaGATGTGGGGGTACCCGCAGCTGTACTCTGGGCAG +
Preference number: 6 (lower is better)
Translates to: LGATGPIALGPR*MWGYPQLYSGQ
Trigger: CTGCCCAGAGTACAGCTGCGGGTACCCCCACATCCACCTCGGACCCAGGGCTATAGGACCAGTGGCCCCAAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CAA 72 bp CAGCCCAGACGCATGACCACAGGGGCGAAGGCCAGCTaGCCCTCCACGCAATGCTTGCGGATGCTGTCCAGG +
Preference number: 6 (lower is better)
Translates to: QPRRMTTGAKAS*PSTQCLRMLSR
Trigger: CCTGGACAGCATCCGCAAGCATTGCGTGGAGGGCAAGCTGGCCTTCGCCCCTGTGGTCATGCGTCTGGGCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS TCA 72 bp TTTGGGCCCCGCCCCTCGGGCGCCTGCTCCTCTTCATaGCTTTCACTCGAGTCCTCCGACCTCTGTGTGGAC +
Preference number: 6 (lower is better)
Translates to: FGPRPSGACSSS*LSLESSDLCVD
Trigger: GTCCACACAGAGGTCGGAGGACTCGAGTGAAAGTCATGAAGAGGAGCAGGCGCCCGAGGGGCGGGGCCCAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 72 bp GGGGCCCAATTCAGTGCCCGGGAGTGTCTGAGGGTCTaGTCGTCCAGAGGACTAGTTGTAGGTGGGGTCGGG +
Preference number: 6 (lower is better)
Translates to: GAQFSARECLRV*SSRGLVVGGVG
Trigger: CCCGACCCCACCTACAACTAGTCCTCTGGACGAGCAGACCCTCAGACACTCCCGGGCACTGAATTGGGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 72 bp TATTCGGATAGGCGCTGGCGGCTCCCTCCGCGCTCTTaGAATTCCAGTTCCAGGAGGAAGCGGCTCCCGCGT +
Preference number: 6 (lower is better)
Translates to: YSDRRWRLPPRS*NSSSRRKRLPR
Trigger: ACGCGGGAGCCGCTTCCTCCTGGAACTGGAATTGCAAGAGCGCGGAGGGAGCCGCCAGCGCCTATCCGAATA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp TGGGTTCCCCCTGCGGCGGGAATCCTCCTATGTGGCTaGCTGGAGACTGAGGCACATGGGCCACATGGTCCA +
Preference number: 6 (lower is better)
Translates to: WVPPAAGILLCG*LETEAHGPHGP
Trigger: TGGACCATGTGGCCCATGTGCCTCAGTCTCCAGCCAGCCACATAGGAGGATTCCCGCCGCAGGGGGAACCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp GCCACTGGTCCTATAGCCCTGGGTCCGAGGTGGATGTaGGGGTACCCGCAGCTGTACTCTGGGCAGAGGCTT +
Preference number: 6 (lower is better)
Translates to: ATGPIALGPRWM*GYPQLYSGQRL
Trigger: AAGCCTCTGCCCAGAGTACAGCTGCGGGTACCCCCACATCCACCTCGGACCCAGGGCTATAGGACCAGTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp CCATGTAACTGGCCCTCCCGGCCTCCCTGGCTGGTCTaGGCCCTGACTGGGGGCTTTAGTTCTGTGACCTTG +
Preference number: 6 (lower is better)
Translates to: PCNWPSRPPWLV*ALTGGFSSVTL
Trigger: CAAGGTCACAGAACTAAAGCCCCCAGTCAGGGCCCAGACCAGCCAGGGAGGCCGGGAGGGCCAGTTACATGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp CCGGGCAACCGCAGGAAGACGTATTCGGATAGGCGCTaGCGGCTCCCTCCGCGCTCTTGCAATTCCAGTTCC +
Preference number: 6 (lower is better)
Translates to: PGNRRKTYSDRR*RLPPRSCNSSS
Trigger: GGAACTGGAATTGCAAGAGCGCGGAGGGAGCCGCCAGCGCCTATCCGAATACGTCTTCCTGCGGTTGCCCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CAA 90 bp CGGGAGGCCATGAGCCGACGTGGCTTAGACACCTGGGAGCTGAACTaGGTGAATTCTCCAGGTGCGGTCCACTCGGAGCCAGTCTTGCCC +
Preference number: 6 (lower is better)
Translates to: REAMSRRGLDTWELN*VNSPGAVHSEPVLP
Trigger: GGGCAAGACTGGCTCCGAGTGGACCGCACCTGGAGAATTCACCAAGTTCAGCTCCCAGGTGTCTAAGCCACGTCGGCTCATGGCCTCCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS TCA 72 bp CCGCTGTCCAGGTCGGACCCTGGTCACGTACACCTTTaGAGGCGACTTCTCCACAGTTCGGGGAGGTGGAGC +
Preference number: 6 (lower is better)
Translates to: PLSRSDPGHVHL*RRLLHSSGRWS
Trigger: GCTCCACCTCCCCGAACTGTGGAGAAGTCGCCTTCAAAGGTGTACGTGACCAGGGTCCGACCTGGACAGCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 72 bp CGCGTGCAGAGTCGCGGCGCTTCTCCACGTTCACGATaGGTAGAAGCGAGAAGCGCCCGCCATGCTTTGCAT +
Preference number: 6 (lower is better)
Translates to: RVQSRGASPRSR*VEARSARHALH
Trigger: ATGCAAAGCATGGCGGGCGCTTCTCGCTTCTACGCATCGTGAACGTGGAGAAGCGCCGCGACTCTGCACGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp ATGCCCTCGGGGAAGCCCGCTGTCCAGGTCGGACCCTaGTCACGTACACCTTTGAAGGCGACTTCTCCACAG +
Preference number: 6 (lower is better)
Translates to: MPSGKPAVQVGP*SRTPLKATSPQ
Trigger: CTGTGGAGAAGTCGCCTTCAAAGGTGTACGTGACCAGGGTCCGACCTGGACAGCGGGCTTCCCCGAGGGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CAA 72 bp CCCGCTGTCCAGGTCGGACCCTGGTCACGTACACCTTaGAAGGCGACTTCTCCACAGTTCGGGGAGGTGGAG +
Preference number: 6 (lower is better)
Translates to: PAVQVGPWSRTP*KATSPQFGEVE
Trigger: CTCCACCTCCCCGAACTGTGGAGAAGTCGCCTTCAAAGGTGTACGTGACCAGGGTCCGACCTGGACAGCGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp ACTTTCACTCGAGTCCTCCGACCTCTGTGTGGACGATaGCACTCGGACTCCGCGGCTATCGGTCACACCGGT +
Preference number: 6 (lower is better)
Translates to: TFTRVLRPLCGR*HSDSAAIGHTG
Trigger: ACCGGTGTGACCGATAGCCGCGGAGTCCGAGTGCCATCGTCCACACAGAGGTCGGAGGACTCGAGTGAAAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CAA 90 bp GAGCTTCCACAGCCCAGACGCATGACCACAGGGGCGAAGGCCAGCTaGCCCTCCACGCAATGCTTGCGGATGCTGTCCAGGATATTAGGT +
Preference number: 6 (lower is better)
Translates to: ELPQPRRMTTGAKAS*PSTQCLRMLSRILG
Trigger: ACCTAATATCCTGGACAGCATCCGCAAGCATTGCGTGGAGGGCAAGCTGGCCTTCGCCCCTGTGGTCATGCGTCTGGGCTGTGGAAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 72 bp CGAGTCCCCCGTATGCACATGCAGCGCGGTCATATCTaGCAGGAACTGCACTACCCAGCGCGCCTGATTCTT +
Preference number: 6 (lower is better)
Translates to: RVPRMHMQRGHI*QELHYPARLIL
Trigger: AAGAATCAGGCGCGCTGGGTAGTGCAGTTCCTGGCAGATATGACCGCGCTGCATGTGCATACGGGGGACTCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS GCA 72 bp ACCACAGGGGCGAAGGCCAGCTTGCCCTCCACGCAATaGTTGCGGATGCTGTCCAGGATATTAGGTGGGAAG +
Preference number: 6 (lower is better)
Translates to: TTGAKASLPSTQ*LRMLSRILGGK
Trigger: CTTCCCACCTAATATCCTGGACAGCATCCGCAAGCATTGCGTGGAGGGCAAGCTGGCCTTCGCCCCTGTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp TGTCCTTTGAACTCTTCCCGCCATGGGGGTGTCTGGTaGGTGAGGTTCAGTGGGGGTGGCTTCCTAGGTCCT +
Preference number: 6 (lower is better)
Translates to: CPLNSSRHGGVW*VRFSGGGFLGP
Trigger: AGGACCTAGGAAGCCACCCCCACTGAACCTCACCCACCAGACACCCCCATGGCGGGAAGAGTTCAAAGGACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CCA 72 bp ACCTGTCCTTTGAACTCTTCCCGCCATGGGGGTGTCTaGTGGGTGAGGTTCAGTGGGGGTGGCTTCCTAGGT +
Preference number: 6 (lower is better)
Translates to: TCPLNSSRHGGV*WVRFSGGGFLG
Trigger: ACCTAGGAAGCCACCCCCACTGAACCTCACCCACCAGACACCCCCATGGCGGGAAGAGTTCAAAGGACAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CAA 72 bp ACAGGGGCGAAGGCCAGCTTGCCCTCCACGCAATGCTaGCGGATGCTGTCCAGGATATTAGGTGGGAAGTGG +
Preference number: 6 (lower is better)
Translates to: TGAKASLPSTQC*RMLSRILGGKW
Trigger: CCACTTCCCACCTAATATCCTGGACAGCATCCGCAAGCATTGCGTGGAGGGCAAGCTGGCCTTCGCCCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS TCA 72 bp TTTCCACTGAGGAGTTCAAGTCCACTGTGGGCACCATaGGTCCCTGTCCATGTAACTGGCCCTCCCGGCCTC +
Preference number: 6 (lower is better)
Translates to: FPLRSSSPLWAP*VPVHVTGPPGL
Trigger: GAGGCCGGGAGGGCCAGTTACATGGACAGGGACTCATGGTGCCCACAGTGGACTTGAACTCCTCAGTGGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS TCA 72 bp CGCCCGCCATGCTTTGCATTTAGCCGCTCCATGTACTaGGCCACTACATCCACCGCTTCGGCCTCAGGAAGT +
Preference number: 6 (lower is better)
Translates to: RPPCFAFSRSMY*ATTSTASASGS
Trigger: ACTTCCTGAGGCCGAAGCGGTGGATGTAGTGGCTCAGTACATGGAGCGGCTAAATGCAAAGCATGGCGGGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS TCA 72 bp TTTCCAGTTCGTTTCAAGTACTGGTACCGAGGTAGCTaGGCCGCACGCAGGGCCCGCTCCACATCCATGTCC +
Preference number: 6 (lower is better)
Translates to: FPVRFKYWYRGS*AARRARSTSMS
Trigger: GGACATGGATGTGGAGCGGGCCCTGCGTGCGGCTCAGCTACCTCGGTACCAGTACTTGAAACGAACTGGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CAA 72 bp ATGAGCCGACGTGGCTTAGACACCTGGGAGCTGAACTaGGTGAATTCTCCAGGTGCGGTCCACTCGGAGCCA +
Preference number: 6 (lower is better)
Translates to: MSRRGLDTWELN*VNSPGAVHSEP
Trigger: TGGCTCCGAGTGGACCGCACCTGGAGAATTCACCAAGTTCAGCTCCCAGGTGTCTAAGCCACGTCGGCTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CAA 72 bp CTGAGCCACTACATCCACCGCTTCGGCCTCAGGAAGTaGCAGGTTCCCGGATACGTTACAGCGCAGGTCGTT +
Preference number: 6 (lower is better)
Translates to: LSHYIHRFGLRK*QVPGYVTAQVV
Trigger: AACGACCTGCGCTGTAACGTATCCGGGAACCTGCAACTTCCTGAGGCCGAAGCGGTGGATGTAGTGGCTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CAA 90 bp CTCCATGTACTGAGCCACTACATCCACCGCTTCGGCCTCAGGAAGTaGCAGGTTCCCGGATACGTTACAGCGCAGGTCGTTCCAGTCAGA +
Preference number: 6 (lower is better)
Translates to: LHVLSHYIHRFGLRK*QVPGYVTAQVVPVR
Trigger: TCTGACTGGAACGACCTGCGCTGTAACGTATCCGGGAACCTGCAACTTCCTGAGGCCGAAGCGGTGGATGTAGTGGCTCAGTACATGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 72 bp TGGCCCACAGCACCTCCACACCAGTCCTCAAACACGTaGAGGTTCACCTGTCCTTTGAACTCTTCCCGCCAT +
Preference number: 6 (lower is better)
Translates to: WPTAPPHQSSNT*RFTCPLNSSRH
Trigger: ATGGCGGGAAGAGTTCAAAGGACAGGTGAACCTGCACGTGTTTGAGGACTGGTGTGGAGGTGCTGTGGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 72 bp GGGGTCCTCCACGGCATCCACTCCAGTTTGCAGGCCTaGAGAGCGCTCGAAGTTTCCAGTTCGTTTCAAGTA +
Preference number: 6 (lower is better)
Translates to: GVLHGIHSSLQA*RALEVSSSFQV
Trigger: TACTTGAAACGAACTGGAAACTTCGAGCGCTCTGCAGGCCTGCAAACTGGAGTGGATGCCGTGGAGGACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CAA 90 bp GAGGAAAACGATGCTGCTGGGGTCCTCCACGGCATCCACTCCAGTTaGCAGGCCTGCAGAGCGCTCGAAGTTTCCAGTTCGTTTCAAGTA +
Preference number: 6 (lower is better)
Translates to: EENDAAGVLHGIHSS*QACRALEVSSSFQV
Trigger: TACTTGAAACGAACTGGAAACTTCGAGCGCTCTGCAGGCCTGCAAACTGGAGTGGATGCCGTGGAGGACCCCAGCAGCATCGTTTTCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 72 bp TCCACCAAGATGATGTTGAAGTACGAGTCCCCCGTATaGACATGCAGCGCGGTCATATCTGCCAGGAACTGC +
Preference number: 6 (lower is better)
Translates to: STKMMLKYESPV*TCSAVISARNC
Trigger: GCAGTTCCTGGCAGATATGACCGCGCTGCATGTGCATACGGGGGACTCGTACTTCAACATCATCTTGGTGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS CAA 72 bp TCACGATGCGTAGAAGCGAGAAGCGCCCGCCATGCTTaGCATTTAGCCGCTCCATGTACTGAGCCACTACAT +
Preference number: 6 (lower is better)
Translates to: SRCVEARSARHA*HLAAPCTEPLH
Trigger: ATGTAGTGGCTCAGTACATGGAGCGGCTAAATGCAAAGCATGGCGGGCGCTTCTCGCTTCTACGCATCGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CAA 72 bp TCCATGTCCTCGCTCTCAAAGTCCACCAAGATGATGTaGAAGTACGAGTCCCCCGTATGCACATGCAGCGCG +
Preference number: 6 (lower is better)
Translates to: SMSSLSKSTKMM*KYESPVCTCSA
Trigger: CGCGCTGCATGTGCATACGGGGGACTCGTACTTCAACATCATCTTGGTGGACTTTGAGAGCGAGGACATGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS CAA 90 bp CGCTCCACATCCATGTCCTCGCTCTCAAAGTCCACCAAGATGATGTaGAAGTACGAGTCCCCCGTATGCACATGCAGCGCGGTCATATCT +
Preference number: 6 (lower is better)
Translates to: RSTSMSSLSKSTKMM*KYESPVCTCSAVIS
Trigger: AGATATGACCGCGCTGCATGTGCATACGGGGGACTCGTACTTCAACATCATCTTGGTGGACTTTGAGAGCGAGGACATGGATGTGGAGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS TCA 72 bp ACTGTAGTCCTTGGTATCTGGCTATGGGGAAATCCTTaGGGATATAGGTGGGGGCATAGGCACAGGGCTCCA +
Preference number: 6 (lower is better)
Translates to: TVVLGIWLWGNP*GYRWGHRHRAP
Trigger: TGGAGCCCTGTGCCTATGCCCCCACCTATATCCTCAAGGATTTCCCCATAGCCAGATACCAAGGACTACAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS GCA 72 bp AAGATGATGTTGAAGTACGAGTCCCCCGTATGCACATaGAGCGCGGTCATATCTGCCAGGAACTGCACTACC +
Preference number: 6 (lower is better)
Translates to: KMMLKYESPVCT*SAVISARNCTT
Trigger: GGTAGTGCAGTTCCTGGCAGATATGACCGCGCTGCATGTGCATACGGGGGACTCGTACTTCAACATCATCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048002.7
ENSMUST00000210517.2
CDS GCA 72 bp CGCCTCCCCACTGGTCACGGAACTCCTCAGTGTTCATaGCTCCTACTCTGTCAAAGTCTGATTTGTAGATCC +
Preference number: 6 (lower is better)
Translates to: RLPTGHGTPQCS*LLLCQSLICRS
Trigger: GGATCTACAAATCAGACTTTGACAGAGTAGGAGGCATGAACACTGAGGAGTTCCGTGACCAGTGGGGAGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS TCA 72 bp CAGAGAACTGGATGTCTCCATCTCTGGCTGGGTGGATaGAGCCAAAAATCCGGAGTCCATAGTTCTTCCACT +
Preference number: 6 (lower is better)
Translates to: QRTGCLHLWLGG*SQKSGVHSSST
Trigger: AGTGGAAGAACTATGGACTCCGGATTTTTGGCTTCATCCACCCAGCCAGAGATGGAGACATCCAGTTCTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS TCA 72 bp ACTCATCTGTGTACAGGGAAATGTGAGCAGAATCAATaGTCTCGAACTTCAGACCAGGCAGGAAAGCTCGCC +
Preference number: 6 (lower is better)
Translates to: THLCTGKCEQNQ*SRTSDQAGKLA
Trigger: GGCGAGCTTTCCTGCCTGGTCTGAAGTTCGAGATCATTGATTCTGCTCACATTTCCCTGTACACAGATGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7
CDS TCA 72 bp ATCTTCAGAGATGACTCATCTGTGTACAGGGAAATGTaGGCAGAATCAATGATCTCGAACTTCAGACCAGGC +
Preference number: 6 (lower is better)
Translates to: IFRDDSSVYREM*AESMISNFRPG
Trigger: GCCTGGTCTGAAGTTCGAGATCATTGATTCTGCTCACATTTCCCTGTACACAGATGAGTCATCTCTGAAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048002.7