RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for B3GNT2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051650

Ensembl transcript IDs: ENSMUST00000055549.4, ENSMUST00000062844.11

Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCTTCAGCCTTCCCTCTTCACAAGGCAAGGGAAGGACTGAGGGCTTaGGAGCCCAGGGGCTACCTGCTCATGAAGGCTAATAGCCTCACA +
Preference number: 1 (lower is better)
Translates to: SSAFPLHKAREGLRA*EPRGYLLMKANSLT
Trigger: TGTGAGGCTATTAGCCTTCATGAGCAGGTAGCCCCTGGGCTCCCAAGCCCTCAGTCCTTCCCTTGCCTTGTGAAGAGGGAAGGCTGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
3UTR-3UTR CCA 90 bp ATGGCCATAAGCCCTGACAAGATGAACTACACGCACTGCGTGGCTTTCCTTGCAGAAGGACTGAGGGCTTaGGAGCCCAGGGGCTACCTG +
Preference number: 2 (lower is better)
Translates to: MAISPDKMNYTHCVAFLAEGLRA*EPRGYL
Trigger: CAGGTAGCCCCTGGGCTCCCAAGCCCTCAGTCCTTC...TGCAAGGAAAGCCACGCAGTGCGTGTAGTTCATCTTGTCAGGGCTTATGGCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
3UTR-3UTR CCA 90 bp ATGGCCATAAGCCCTGACAAGATGAACTACACGCACTGCGTGGCTTTCCTTGCATGTGAGAGCACACCATaGGAACTAGTCAGGCTAGGC +
Preference number: 2 (lower is better)
Translates to: MAISPDKMNYTHCVAFLACESTP*ELVRLG
Trigger: GCCTAGCCTGACTAGTTCCCATGGTGTGCTCTCACA...TGCAAGGAAAGCCACGCAGTGCGTGTAGTTCATCTTGTCAGGGCTTATGGCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
3UTR-3UTR CCA 90 bp CATGCTGGATCTGGGAGGAGATGGGGAGGTGAATACAATCAAAACACATTGTATGAAGGACTGAGGGCTTaGGAGCCCAGGGGCTACCTG +
Preference number: 2 (lower is better)
Translates to: HAGSGRRWGGEYNQNTLYEGLRA*EPRGYL
Trigger: CAGGTAGCCCCTGGGCTCCCAAGCCCTCAGTCCTTC...ATACAATGTGTTTTGATTGTATTCACCTCCCCATCTCCTCCCAGATCCAGCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
3UTR-3UTR GCA 90 bp ATGGCCATAAGCCCTGACAAGATGAACTACACGCACTGCGTGGCTTTCCTTGCACATAACCACTCACCCTaGCATGCTGAGCTGTCTTCA +
Preference number: 2 (lower is better)
Translates to: MAISPDKMNYTHCVAFLAHNHSP*HAELSS
Trigger: TGAAGACAGCTCAGCATGGCAGGGTGAGTGGTTATG...TGCAAGGAAAGCCACGCAGTGCGTGTAGTTCATCTTGTCAGGGCTTATGGCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
3UTR-3UTR GCA 90 bp TGGCTGTCGGGCTACTCAGTCTCCAGTTGGCCATTAGGGAATCACACTCATGATCTGCGTGGCTTTCCTTaGATAAAGGAAGTAACGGTT +
Preference number: 2 (lower is better)
Translates to: WLSGYSVSSWPLGNHTHDLRGFP*IKEVTV
Trigger: AACCGTTACTTCCTTTATGCAAGGAAAGCCACGCAG...ATCATGAGTGTGATTCCCTAATGGCCAACTGGAGACTGAGTAGCCCGACAGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
3UTR-3UTR GCA 90 bp CATGCTGGATCTGGGAGGAGATGGGGAGGTGAATACAATCAAAACACATTGTATCTGCGTGGCTTTCCTTaGATAAAGGAAGTAACGGTT +
Preference number: 2 (lower is better)
Translates to: HAGSGRRWGGEYNQNTLYLRGFP*IKEVTV
Trigger: AACCGTTACTTCCTTTATGCAAGGAAAGCCACGCAG...ATACAATGTGTTTTGATTGTATTCACCTCCCCATCTCCTCCCAGATCCAGCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
3UTR-3UTR CCA 90 bp AAATACAATCACTTTATTTCCACTTTTTCCCAGTCCCCTGTAGCACAGGTGAGAGGATCTGGGAGGAGATaGGGAGGTGAATACAATCAA +
Preference number: 2 (lower is better)
Translates to: KYNHFISTFSQSPVAQVRGSGRR*GGEYNQ
Trigger: TTGATTGTATTCACCTCCCCATCTCCTCCCAGATCC...TCTCACCTGTGCTACAGGGGACTGGGAAAAAGTGGAAATAAAGTGATTGTATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062844.11
3UTR-3UTR GCA 90 bp GAATTCCATTTCACAAAGCCACCAGGTTGTGTCCTACATATATATATATGTATGCATAACCACTCACCCTaGCATGCTGAGCTGTCTTCA +
Preference number: 2 (lower is better)
Translates to: EFHFTKPPGCVLHIYICMHNHSP*HAELSS
Trigger: TGAAGACAGCTCAGCATGGCAGGGTGAGTGGTTATG...CATACATATATATATATGTAGGACACAACCTGGTGGCTTTGTGAAATGGAATTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
3UTR GCA 72 bp ACCGGCAGCCAGAGGAAGGGTCATAACCACTCACCCTaGCATGCTGAGCTGTCTTCAGCCTTCCCTCTTCAC +
Preference number: 3 (lower is better)
Translates to: TGSQRKGHNHSP*HAELSSAFPLH
Trigger: GTGAAGAGGGAAGGCTGAAGACAGCTCAGCATGGCAGGGTGAGTGGTTATGACCCTTCCTCTGGCTGCCGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
3UTR TCA 72 bp GATAATATGGCAAGAATAGAATCTTGGGGTTTTAACTaGCTAATCACGTCCAAAGCTCAGAAGTGGCGAATG +
Preference number: 3 (lower is better)
Translates to: DNMARIESWGFN*LITSKAQKWRM
Trigger: CATTCGCCACTTCTGAGCTTTGGACGTGATTAGTCAGTTAAAACCCCAAGATTCTATTCTTGCCATATTATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR TCA 90 bp ACCGGCAGCCAGAGGAAGGGTCATAACCACTCACCCTGCCATGCTGAGCTGTCTGCTAGCTCCCCTGTCTaGTTGGCCACCCTGTTCAAG +
Preference number: 4 (lower is better)
Translates to: TGSQRKGHNHSPCHAELSASSPV*LATLFK
Trigger: CTTGAACAGGGTGGCCAATCAGACAGGGGAGCTAGC...AGACAGCTCAGCATGGCAGGGTGAGTGGTTATGACCCTTCCTCTGGCTGCCGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CCA 90 bp CTCACCTATTGTGAGAGCACACCATGGGAACTAGTCAGGCTAGGCCTTTCTGTGACCCCCGGCATACGGTaGGTAGACGCCGGTGTAGAA +
Preference number: 4 (lower is better)
Translates to: LTYCESTPWELVRLGLSVTPGIR*VDAGVE
Trigger: TTCTACACCGGCGTCTACCCACCGTATGCCGGGGGT...CACAGAAAGGCCTAGCCTGACTAGTTCCCATGGTGTGCTCTCACAATAGGTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CCA 90 bp ACCGGCAGCCAGAGGAAGGGTCATAACCACTCACCCTGCCATGCTGAGCTGTCTGCCTTTGTGCTTCTCTaGAACAAGGCCCAGTTTCTG +
Preference number: 4 (lower is better)
Translates to: TGSQRKGHNHSPCHAELSAFVLL*NKAQFL
Trigger: CAGAAACTGGGCCTTGTTCCAGAGAAGCACAAAGGC...AGACAGCTCAGCATGGCAGGGTGAGTGGTTATGACCCTTCCTCTGGCTGCCGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR GCA 90 bp CTCACCTATTGTGAGAGCACACCATGGGAACTAGTCAGGCTAGGCCTTTCTGTGAGTATGCCCGGGGAGTaGTGGGTGGCTTCCAGAACT +
Preference number: 4 (lower is better)
Translates to: LTYCESTPWELVRLGLSVSMPGE*WVASRT
Trigger: AGTTCTGGAAGCCACCCAGCACTCCCCGGGCATACT...CACAGAAAGGCCTAGCCTGACTAGTTCCCATGGTGTGCTCTCACAATAGGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR GCA 90 bp TGGCTGTCGGGCTACTCAGTCTCCAGTTGGCCATTAGGGAATCACACTCATGATCCTCTGGGGGTGTCTTaGCCAACAGGAAGACCCTCA +
Preference number: 4 (lower is better)
Translates to: WLSGYSVSSWPLGNHTHDPLGVS*PTGRPS
Trigger: TGAGGGTCTTCCTGTTGGGCAAGACACCCCCAGAGG...ATCATGAGTGTGATTCCCTAATGGCCAACTGGAGACTGAGTAGCCCGACAGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CCA 90 bp ACCGGCAGCCAGAGGAAGGGTCATAACCACTCACCCTGCCATGCTGAGCTGTCTCACATGAGGATGTCCTaGTGCTTGTCACTCTCAAAC +
Preference number: 4 (lower is better)
Translates to: TGSQRKGHNHSPCHAELSHMRMS*CLSLSN
Trigger: GTTTGAGAGTGACAAGCACCAGGACATCCTCATGTG...AGACAGCTCAGCATGGCAGGGTGAGTGGTTATGACCCTTCCTCTGGCTGCCGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR GCA 90 bp TATTGTGAGAGCACACCATGGGAACTAGTCAGGCTAGGCCTTTCTGTGAAATGCTTCCCTGTTCCAGTATaGCCGGGGAGTGCTGGGTGG +
Preference number: 4 (lower is better)
Translates to: YCESTPWELVRLGLSVKCFPVPV*PGSAGW
Trigger: CCACCCAGCACTCCCCGGGCATACTGGAACAGGGAA...GCATTTCACAGAAAGGCCTAGCCTGACTAGTTCCCATGGTGTGCTCTCACAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR TCA 90 bp CTCACCTATTGTGAGAGCACACCATGGGAACTAGTCAGGCTAGGCCTTTCTGTGCGTCATCATCGCCCTTaGAGACAAACTCTGCGTCTG +
Preference number: 4 (lower is better)
Translates to: LTYCESTPWELVRLGLSVRHHRP*RQTLRL
Trigger: CAGACGCAGAGTTTGTCTTCAAGGGCGATGATGACG...CACAGAAAGGCCTAGCCTGACTAGTTCCCATGGTGTGCTCTCACAATAGGTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR TCA 90 bp ACCGGCAGCCAGAGGAAGGGTCATAACCACTCACCCTGCCATGCTGAGCTGTCTTTAGGACTTTGCAACTaGGACCAGATATCAATCATC +
Preference number: 4 (lower is better)
Translates to: TGSQRKGHNHSPCHAELSLGLCN*DQISII
Trigger: GATGATTGATATCTGGTCTCAGTTGCAAAGTCCTAA...AGACAGCTCAGCATGGCAGGGTGAGTGGTTATGACCCTTCCTCTGGCTGCCGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR TCA 90 bp TGGCTGTCGGGCTACTCAGTCTCCAGTTGGCCATTAGGGAATCACACTCATGATCTCTATAGTTCCACATaGGGATGTCCTGGTGCTTGT +
Preference number: 4 (lower is better)
Translates to: WLSGYSVSSWPLGNHTHDLYSST*GCPGAC
Trigger: ACAAGCACCAGGACATCCTCATGTGGAACTATAGAG...ATCATGAGTGTGATTCCCTAATGGCCAACTGGAGACTGAGTAGCCCGACAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR GCA 90 bp TGGCTGTCGGGCTACTCAGTCTCCAGTTGGCCATTAGGGAATCACACTCATGATGACTCCCGAATTGCTTaGCTTCTGGCAAAATGTGGA +
Preference number: 4 (lower is better)
Translates to: WLSGYSVSSWPLGNHTHDDSRIA*LLAKCG
Trigger: TCCACATTTTGCCAGAAGGCAAGCAATTCGGGAGTC...ATCATGAGTGTGATTCCCTAATGGCCAACTGGAGACTGAGTAGCCCGACAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR GCA 90 bp CATGCTGGATCTGGGAGGAGATGGGGAGGTGAATACAATCAAAACACATTGTATCCTCTGGGGGTGTCTTaGCCAACAGGAAGACCCTCA +
Preference number: 4 (lower is better)
Translates to: HAGSGRRWGGEYNQNTLYPLGVS*PTGRPS
Trigger: TGAGGGTCTTCCTGTTGGGCAAGACACCCCCAGAGG...ATACAATGTGTTTTGATTGTATTCACCTCCCCATCTCCTCCCAGATCCAGCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR GCA 90 bp ATGGCCATAAGCCCTGACAAGATGAACTACACGCACTGCGTGGCTTTCCTTGCACTTGAAGACAAACTCTaGGTCTGGACAGGAAGTGCT +
Preference number: 4 (lower is better)
Translates to: MAISPDKMNYTHCVAFLALEDKL*VWTGSA
Trigger: AGCACTTCCTGTCCAGACGCAGAGTTTGTCTTCAAG...TGCAAGGAAAGCCACGCAGTGCGTGTAGTTCATCTTGTCAGGGCTTATGGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CCA 90 bp CTCACCTATTGTGAGAGCACACCATGGGAACTAGTCAGGCTAGGCCTTTCTGTGCCACCCTGTTCAAGATaGGATTGTACCACCTGTTCA +
Preference number: 4 (lower is better)
Translates to: LTYCESTPWELVRLGLSVPPCSR*DCTTCS
Trigger: TGAACAGGTGGTACAATCCCATCTTGAACAGGGTGG...CACAGAAAGGCCTAGCCTGACTAGTTCCCATGGTGTGCTCTCACAATAGGTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CCA 90 bp CATGCTGGATCTGGGAGGAGATGGGGAGGTGAATACAATCAAAACACATTGTATAGGGTGGTTGTCCTCTaGGGGTGTCTTGCCCAACAG +
Preference number: 4 (lower is better)
Translates to: HAGSGRRWGGEYNQNTLYRVVVL*GCLAQQ
Trigger: CTGTTGGGCAAGACACCCCCAGAGGACAACCACCCT...ATACAATGTGTTTTGATTGTATTCACCTCCCCATCTCCTCCCAGATCCAGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CCA 90 bp ATGGCCATAAGCCCTGACAAGATGAACTACACGCACTGCGTGGCTTTCCTTGCACACATGAGGATGTCCTaGTGCTTGTCACTCTCAAAC +
Preference number: 4 (lower is better)
Translates to: MAISPDKMNYTHCVAFLAHMRMS*CLSLSN
Trigger: GTTTGAGAGTGACAAGCACCAGGACATCCTCATGTG...TGCAAGGAAAGCCACGCAGTGCGTGTAGTTCATCTTGTCAGGGCTTATGGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR TCA 90 bp TATTGTGAGAGCACACCATGGGAACTAGTCAGGCTAGGCCTTTCTGTGAAATGCCTCTATAGTTCCACATaGGGATGTCCTGGTGCTTGT +
Preference number: 4 (lower is better)
Translates to: YCESTPWELVRLGLSVKCLYSST*GCPGAC
Trigger: ACAAGCACCAGGACATCCTCATGTGGAACTATAGAG...GCATTTCACAGAAAGGCCTAGCCTGACTAGTTCCCATGGTGTGCTCTCACAATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR GCA 90 bp AAATACAATCACTTTATTTCCACTTTTTCCCAGTCCCCTGTAGCACAGGTGAGAAGTATGCCCGGGGAGTaGTGGGTGGCTTCCAGAACT +
Preference number: 4 (lower is better)
Translates to: KYNHFISTFSQSPVAQVRSMPGE*WVASRT
Trigger: AGTTCTGGAAGCCACCCAGCACTCCCCGGGCATACT...TCTCACCTGTGCTACAGGGGACTGGGAAAAAGTGGAAATAAAGTGATTGTATTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000062844.11
CDS-3UTR CCA 90 bp TATTGTGAGAGCACACCATGGGAACTAGTCAGGCTAGGCCTTTCTGTGAAATGCCCACCCTGTTCAAGATaGGATTGTACCACCTGTTCA +
Preference number: 4 (lower is better)
Translates to: YCESTPWELVRLGLSVKCPPCSR*DCTTCS
Trigger: TGAACAGGTGGTACAATCCCATCTTGAACAGGGTGG...GCATTTCACAGAAAGGCCTAGCCTGACTAGTTCCCATGGTGTGCTCTCACAATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR TCA 90 bp ATGGCCATAAGCCCTGACAAGATGAACTACACGCACTGCGTGGCTTTCCTTGCATTAGGACTTTGCAACTaGGACCAGATATCAATCATC +
Preference number: 4 (lower is better)
Translates to: MAISPDKMNYTHCVAFLALGLCN*DQISII
Trigger: GATGATTGATATCTGGTCTCAGTTGCAAAGTCCTAA...TGCAAGGAAAGCCACGCAGTGCGTGTAGTTCATCTTGTCAGGGCTTATGGCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CCA 90 bp ATGGCCATAAGCCCTGACAAGATGAACTACACGCACTGCGTGGCTTTCCTTGCAGGTGTAGAAGACTTCTaGGATGTAGTACTTCAGTTT +
Preference number: 4 (lower is better)
Translates to: MAISPDKMNYTHCVAFLAGVEDF*DVVLQF
Trigger: AAACTGAAGTACTACATCCCAGAAGTCTTCTACACC...TGCAAGGAAAGCCACGCAGTGCGTGTAGTTCATCTTGTCAGGGCTTATGGCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CCA 90 bp CATGCTGGATCTGGGAGGAGATGGGGAGGTGAATACAATCAAAACACATTGTATGCCTTTGTGCTTCTCTaGAACAAGGCCCAGTTTCTG +
Preference number: 4 (lower is better)
Translates to: HAGSGRRWGGEYNQNTLYAFVLL*NKAQFL
Trigger: CAGAAACTGGGCCTTGTTCCAGAGAAGCACAAAGGC...ATACAATGTGTTTTGATTGTATTCACCTCCCCATCTCCTCCCAGATCCAGCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR TCA 90 bp TATTGTGAGAGCACACCATGGGAACTAGTCAGGCTAGGCCTTTCTGTGAAATGCTGGCAAAATGTGGAATaGGGGACTTTATCGCCAATA +
Preference number: 4 (lower is better)
Translates to: YCESTPWELVRLGLSVKCWQNVE*GTLSPI
Trigger: TATTGGCGATAAAGTCCCTCATTCCACATTTTGCCA...GCATTTCACAGAAAGGCCTAGCCTGACTAGTTCCCATGGTGTGCTCTCACAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CCA 90 bp GAATTCCATTTCACAAAGCCACCAGGTTGTGTCCTACATATATATATATGTATGACCCCCGGCATACGGTaGGTAGACGCCGGTGTAGAA +
Preference number: 4 (lower is better)
Translates to: EFHFTKPPGCVLHIYICMTPGIR*VDAGVE
Trigger: TTCTACACCGGCGTCTACCCACCGTATGCCGGGGGT...CATACATATATATATATGTAGGACACAACCTGGTGGCTTTGTGAAATGGAATTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR TCA 90 bp CATGCTGGATCTGGGAGGAGATGGGGAGGTGAATACAATCAAAACACATTGTATTGGCAAAATGTGGAATaGGGGACTTTATCGCCAATA +
Preference number: 4 (lower is better)
Translates to: HAGSGRRWGGEYNQNTLYWQNVE*GTLSPI
Trigger: TATTGGCGATAAAGTCCCTCATTCCACATTTTGCCA...ATACAATGTGTTTTGATTGTATTCACCTCCCCATCTCCTCCCAGATCCAGCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR TCA 90 bp GAATTCCATTTCACAAAGCCACCAGGTTGTGTCCTACATATATATATATGTATGCGTCATCATCGCCCTTaGAGACAAACTCTGCGTCTG +
Preference number: 4 (lower is better)
Translates to: EFHFTKPPGCVLHIYICMRHHRP*RQTLRL
Trigger: CAGACGCAGAGTTTGTCTTCAAGGGCGATGATGACG...CATACATATATATATATGTAGGACACAACCTGGTGGCTTTGTGAAATGGAATTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR GCA 90 bp GAATTCCATTTCACAAAGCCACCAGGTTGTGTCCTACATATATATATATGTATGGACTCCCGAATTGCTTaGCTTCTGGCAAAATGTGGA +
Preference number: 4 (lower is better)
Translates to: EFHFTKPPGCVLHIYICMDSRIA*LLAKCG
Trigger: TCCACATTTTGCCAGAAGGCAAGCAATTCGGGAGTC...CATACATATATATATATGTAGGACACAACCTGGTGGCTTTGTGAAATGGAATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR GCA 90 bp GAATTCCATTTCACAAAGCCACCAGGTTGTGTCCTACATATATATATATGTATGCTTGAAGACAAACTCTaGGTCTGGACAGGAAGTGCT +
Preference number: 4 (lower is better)
Translates to: EFHFTKPPGCVLHIYICMLEDKL*VWTGSA
Trigger: AGCACTTCCTGTCCAGACGCAGAGTTTGTCTTCAAG...CATACATATATATATATGTAGGACACAACCTGGTGGCTTTGTGAAATGGAATTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CCA 90 bp GAATTCCATTTCACAAAGCCACCAGGTTGTGTCCTACATATATATATATGTATGGGTGTAGAAGACTTCTaGGATGTAGTACTTCAGTTT +
Preference number: 4 (lower is better)
Translates to: EFHFTKPPGCVLHIYICMGVEDF*DVVLQF
Trigger: AAACTGAAGTACTACATCCCAGAAGTCTTCTACACC...CATACATATATATATATGTAGGACACAACCTGGTGGCTTTGTGAAATGGAATTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CAA 90 bp TATTGTGAGAGCACACCATGGGAACTAGTCAGGCTAGGCCTTTCTGTGAAATGCTCCTCTGGGGGTGTCTaGCCCAACAGGAAGACCCTC +
Preference number: 5 (lower is better)
Translates to: YCESTPWELVRLGLSVKCSSGGV*PNRKTL
Trigger: GAGGGTCTTCCTGTTGGGCAAGACACCCCCAGAGGA...GCATTTCACAGAAAGGCCTAGCCTGACTAGTTCCCATGGTGTGCTCTCACAATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CAA 90 bp ATGGCCATAAGCCCTGACAAGATGAACTACACGCACTGCGTGGCTTTCCTTGCATCAGGTGACTTGTGTTaGGAGATGTGGCTAGCTCCC +
Preference number: 5 (lower is better)
Translates to: MAISPDKMNYTHCVAFLASGDLC*EMWLAP
Trigger: GGGAGCTAGCCACATCTCCAAACACAAGTCACCTGA...TGCAAGGAAAGCCACGCAGTGCGTGTAGTTCATCTTGTCAGGGCTTATGGCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CAA 90 bp ACCGGCAGCCAGAGGAAGGGTCATAACCACTCACCCTGCCATGCTGAGCTGTCTCCTATGAACAAGTCTTaGGCTTTGCTCTTGGATAAG +
Preference number: 5 (lower is better)
Translates to: TGSQRKGHNHSPCHAELSPMNKS*ALLLDK
Trigger: CTTATCCAAGAGCAAAGCCAAAGACTTGTTCATAGG...AGACAGCTCAGCATGGCAGGGTGAGTGGTTATGACCCTTCCTCTGGCTGCCGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CAA 90 bp TATTGTGAGAGCACACCATGGGAACTAGTCAGGCTAGGCCTTTCTGTGAAATGCTCAGGTGACTTGTGTTaGGAGATGTGGCTAGCTCCC +
Preference number: 5 (lower is better)
Translates to: YCESTPWELVRLGLSVKCSGDLC*EMWLAP
Trigger: GGGAGCTAGCCACATCTCCAAACACAAGTCACCTGA...GCATTTCACAGAAAGGCCTAGCCTGACTAGTTCCCATGGTGTGCTCTCACAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CAA 90 bp TGGCTGTCGGGCTACTCAGTCTCCAGTTGGCCATTAGGGAATCACACTCATGATAGGATGTCCTGGTGCTaGTCACTCTCAAACTTAAGC +
Preference number: 5 (lower is better)
Translates to: WLSGYSVSSWPLGNHTHDRMSWC*SLSNLS
Trigger: GCTTAAGTTTGAGAGTGACAAGCACCAGGACATCCT...ATCATGAGTGTGATTCCCTAATGGCCAACTGGAGACTGAGTAGCCCGACAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CAA 90 bp ATGGCCATAAGCCCTGACAAGATGAACTACACGCACTGCGTGGCTTTCCTTGCAAGGATGTCCTGGTGCTaGTCACTCTCAAACTTAAGC +
Preference number: 5 (lower is better)
Translates to: MAISPDKMNYTHCVAFLARMSWC*SLSNLS
Trigger: GCTTAAGTTTGAGAGTGACAAGCACCAGGACATCCT...TGCAAGGAAAGCCACGCAGTGCGTGTAGTTCATCTTGTCAGGGCTTATGGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CAA 90 bp TGGCTGTCGGGCTACTCAGTCTCCAGTTGGCCATTAGGGAATCACACTCATGATAATAGCTCAGGTGACTaGTGTTTGGAGATGTGGCTA +
Preference number: 5 (lower is better)
Translates to: WLSGYSVSSWPLGNHTHDNSSGD*CLEMWL
Trigger: TAGCCACATCTCCAAACACAAGTCACCTGAGCTATT...ATCATGAGTGTGATTCCCTAATGGCCAACTGGAGACTGAGTAGCCCGACAGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CAA 90 bp TGGCTGTCGGGCTACTCAGTCTCCAGTTGGCCATTAGGGAATCACACTCATGATGTAAGAAGGGCTTCTTaGCACATTTCTTCGGTTGAT +
Preference number: 5 (lower is better)
Translates to: WLSGYSVSSWPLGNHTHDVRRAS*HISSVD
Trigger: ATCAACCGAAGAAATGTGCAAAGAAGCCCTTCTTAC...ATCATGAGTGTGATTCCCTAATGGCCAACTGGAGACTGAGTAGCCCGACAGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CAA 90 bp ATGGCCATAAGCCCTGACAAGATGAACTACACGCACTGCGTGGCTTTCCTTGCACTTTCCATTTTTGTCTaGGCTACTGTTTTTGGAGAC +
Preference number: 5 (lower is better)
Translates to: MAISPDKMNYTHCVAFLALSIFV*ATVFGD
Trigger: GTCTCCAAAAACAGTAGCCAAGACAAAAATGGAAAG...TGCAAGGAAAGCCACGCAGTGCGTGTAGTTCATCTTGTCAGGGCTTATGGCCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11
CDS-3UTR CAA 90 bp AAATACAATCACTTTATTTCCACTTTTTCCCAGTCCCCTGTAGCACAGGTGAGACTTTCCATTTTTGTCTaGGCTACTGTTTTTGGAGAC +
Preference number: 5 (lower is better)
Translates to: KYNHFISTFSQSPVAQVRLSIFV*ATVFGD
Trigger: GTCTCCAAAAACAGTAGCCAAGACAAAAATGGAAAG...TCTCACCTGTGCTACAGGGGACTGGGAAAAAGTGGAAATAAAGTGATTGTATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000062844.11
CDS-3UTR CAA 90 bp GAATTCCATTTCACAAAGCCACCAGGTTGTGTCCTACATATATATATATGTATGGTAAGAAGGGCTTCTTaGCACATTTCTTCGGTTGAT +
Preference number: 5 (lower is better)
Translates to: EFHFTKPPGCVLHIYICMVRRAS*HISSVD
Trigger: ATCAACCGAAGAAATGTGCAAAGAAGCCCTTCTTAC...CATACATATATATATATGTAGGACACAACCTGGTGGCTTTGTGAAATGGAATTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055549.4
ENSMUST00000062844.11