Pregenerated sensors for B3GAT3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071649Ensembl transcript IDs: ENSMUST00000096243.7, ENSMUST00000237071.2
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CTTTCTGAGTCCATCTGTCCTGCTCCGCCCCAGATGGGGCTGATCTGGCTCACTTGTGGTTGGAGGGGCTaGCTCTGGTTCTCAGGGGTC | + |
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Preference number: 2 (lower is better) Translates to: LSESICPAPPQMGLIWLTCGWRG*LWFSGV Trigger: GACCCCTGAGAACCAGAGGCAGCCCCTCCAACCACA...AGTGAGCCAGATCAGCCCCATCTGGGGCGGAGCAGGACAGATGGACTCAGAAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| 3UTR-3UTR CAA 90 bp | CTCCTTTCTGAGTCCATCTGTCCTGCTCCGCCCCAGATGGGGCTGATCTGGCTCGGACACACCCTGTGGTaGGAGGGGCTGCCTCTGGTT | + |
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Preference number: 3 (lower is better) Translates to: LLSESICPAPPQMGLIWLGHTLW*EGLPLV Trigger: AACCAGAGGCAGCCCCTCCAACCACAGGGTGTGTCC...GAGCCAGATCAGCCCCATCTGGGGCGGAGCAGGACAGATGGACTCAGAAAGGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS-3UTR CCA 90 bp | GGGAGGGAAGCAACTGGGACACACCCTGTGGTTGGAGGGGCTGCCTCTGGTTCTTTCAGGGGGCTGGGCTaGGACAGGGGGTGGGCGACG | + |
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Preference number: 4 (lower is better) Translates to: GREATGTHPVVGGAASGSFRGLG*DRGWAT Trigger: CGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAA...AGAACCAGAGGCAGCCCCTCCAACCACAGGGTGTGTCCCAGTTGCTTCCCTCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| 3UTR CAA 72 bp | GGGAAGGGAGGGAAGCAACTGGGACACACCCTGTGGTaGGAGGGGCTGCCTCTGGTTCTCAGGGGTCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: GKGGKQLGHTLW*EGLPLVLRGQV Trigger: GACCTGACCCCTGAGAACCAGAGGCAGCCCCTCCAACCACAGGGTGTGTCCCAGTTGCTTCCCTCCCTTCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS-3UTR GCA 90 bp | AGGGAGGGAAGCAACTGGGACACACCCTGTGGTTGGAGGGGCTGCCTCTGGTTCCAGGTGGCCCCGGGGTaGAGTAGCATCAAACTGGGC | + |
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Preference number: 4 (lower is better) Translates to: REGSNWDTPCGWRGCLWFQVAPG*SSIKLG Trigger: GCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTG...GAACCAGAGGCAGCCCCTCCAACCACAGGGTGTGTCCCAGTTGCTTCCCTCCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS-3UTR CCA 90 bp | CTTTCTGAGTCCATCTGTCCTGCTCCGCCCCAGATGGGGCTGATCTGGCTCACTTCAGGTTCAGGGGGCTaGGCTGGGACAGGGGGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: LSESICPAPPQMGLIWLTSGSGG*AGTGGG Trigger: CCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGA...AGTGAGCCAGATCAGCCCCATCTGGGGCGGAGCAGGACAGATGGACTCAGAAAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS-3UTR TCA 90 bp | GACACACCCTGTGGTTGGAGGGGCTGCCTCTGGTTCTCAGGGGTCAGGTCTTTACTCAATGGCTGGGTCTaGGCCCTGGCCCTGCCGTTG | + |
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Preference number: 4 (lower is better) Translates to: DTPCGWRGCLWFSGVRSLLNGWV*ALALPL Trigger: CAACGGCAGGGCCAGGGCTCAGACCCAGCCATTGAG...TAAAGACCTGACCCCTGAGAACCAGAGGCAGCCCCTCCAACCACAGGGTGTGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS-3UTR CCA 90 bp | AGGGAGGGAAGCAACTGGGACACACCCTGTGGTTGGAGGGGCTGCCTCTGGTTCACCAAGCTCAGGGTCTaGGACAGCCGAACCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: REGSNWDTPCGWRGCLWFTKLRV*DSRTSS Trigger: AGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGT...GAACCAGAGGCAGCCCCTCCAACCACAGGGTGTGTCCCAGTTGCTTCCCTCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS-3UTR GCA 90 bp | CTTTCTGAGTCCATCTGTCCTGCTCCGCCCCAGATGGGGCTGATCTGGCTCACTTCCTTCTGCCGAAGCTaGTCAGCTGCAGCTCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: LSESICPAPPQMGLIWLTSFCRS*SAAARS Trigger: GCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGA...AGTGAGCCAGATCAGCCCCATCTGGGGCGGAGCAGGACAGATGGACTCAGAAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS-3UTR GCA 90 bp | GACACACCCTGTGGTTGGAGGGGCTGCCTCTGGTTCTCAGGGGTCAGGTCTTTAATCCTCAGGTCCTTCTaGCGAAGCTGCTCAGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: DTPCGWRGCLWFSGVRSLILRSF*RSCSAA Trigger: TGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGAT...TAAAGACCTGACCCCTGAGAACCAGAGGCAGCCCCTCCAACCACAGGGTGTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS-3UTR CCA 90 bp | GGGAGGGAAGCAACTGGGACACACCCTGTGGTTGGAGGGGCTGCCTCTGGTTCTGCAGTAGCATCAAACTaGGCATTGGGCTTAGCCAAT | + |
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Preference number: 4 (lower is better) Translates to: GREATGTHPVVGGAASGSAVASN*ALGLAN Trigger: ATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGC...AGAACCAGAGGCAGCCCCTCCAACCACAGGGTGTGTCCCAGTTGCTTCCCTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS-3UTR GCA 90 bp | CTTTCTGAGTCCATCTGTCCTGCTCCGCCCCAGATGGGGCTGATCTGGCTCACTTGTAGCTGCTCCTCCTaGTTCATCTTAGGTTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: LSESICPAPPQMGLIWLTCSCSS*FILGFS Trigger: AGAGAAACCTAAGATGAAGCAGGAGGAGCAGCTACA...AGTGAGCCAGATCAGCCCCATCTGGGGCGGAGCAGGACAGATGGACTCAGAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS CCA 90 bp | AGTAGGCAGGGCCTCAGGTTCAGGGGGCTGGGCTGGGACAGGGGGTaGGCGACGGAGATCAGCTTGCAACTGGGATATCCTCAGGTCCTT | + |
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Preference number: 5 (lower is better) Translates to: SRQGLRFRGLGWDRG*ATEISLQLGYPQVL Trigger: AAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000096243.7 ENSMUST00000237071.2 |
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| CDS GCA 90 bp | GGGCGACGGAGATCAGCTTGCAACTGGGATATCCTCAGGTCCTTCTaGCGAAGCTGCTCAGCTGCAGCTCGAAGCGGAGGGAGGCAGTCG | + |
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Preference number: 5 (lower is better) Translates to: GRRRSACNWDILRSF*RSCSAAARSGGRQS Trigger: CGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096243.7 ENSMUST00000237071.2 |
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| CDS-3UTR CAA 90 bp | GGGAGGGAAGCAACTGGGACACACCCTGTGGTTGGAGGGGCTGCCTCTGGTTCTACCTTCCCTAAGCCGTaGAGCCTTGGGGGTAAGGAC | + |
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Preference number: 5 (lower is better) Translates to: GREATGTHPVVGGAASGSTFPKP*SLGGKD Trigger: GTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGT...AGAACCAGAGGCAGCCCCTCCAACCACAGGGTGTGTCCCAGTTGCTTCCCTCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS-3UTR CAA 90 bp | CTTTCTGAGTCCATCTGTCCTGCTCCGCCCCAGATGGGGCTGATCTGGCTCACTGCATCAAACTGGGCATaGGGCTTAGCCAATAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: LSESICPAPPQMGLIWLTASNWA*GLANSK Trigger: CTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGC...AGTGAGCCAGATCAGCCCCATCTGGGGCGGAGCAGGACAGATGGACTCAGAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS TCA 72 bp | GGCCGGACCCAGCCTGGCTCACCTTCCCTAAGCCGTTaGGCCTTGGGGGTAAGGACAGCCAGGTGTGTAAAG | + |
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Preference number: 6 (lower is better) Translates to: GRTQPGSPSLSR*ALGVRTARCVK Trigger: CTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTCCGGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS CAA 72 bp | GGGCCGGACCCAGCCTGGCTCACCTTCCCTAAGCCGTaGAGCCTTGGGGGTAAGGACAGCCAGGTGTGTAAA | + |
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Preference number: 6 (lower is better) Translates to: GPDPAWLTFPKP*SLGGKDSQVCK Trigger: TTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTCCGGCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS CCA 72 bp | AGCAGCCAGTGTAGACGGGGCACCAAGCTCAGGGTCTaGGACAGCCGAACCAGCTCTGCCTTTTGTACCAGC | + |
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Preference number: 6 (lower is better) Translates to: SSQCRRGTKLRV*DSRTSSAFCTS Trigger: GCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096243.7 |
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| CDS GCA 72 bp | CGCCATGTCCAAGGGAAAGGGCCTGTTGGGTTCCCATaGTGTGTGGAAACCCACAACGCGGCCATCCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: RHVQGKGPVGFP*CVETHNAAILY Trigger: GTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096243.7 ENSMUST00000237071.2 |
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| CDS GCA 72 bp | AGATCAGCTTGCAACTGGGATATCCTCAGGTCCTTCTaGCGAAGCTGCTCAGCTGCAGCTCGAAGCGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: RSACNWDILRSF*RSCSAAARSGG Trigger: CCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096243.7 ENSMUST00000237071.2 |
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