Pregenerated sensors for B3GALNT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043300Ensembl transcript IDs: ENSMUST00000061826.3
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCTGTCTAGGGAGCTCCATGAGTTTCAGCCCAGGCAAACCAGCATaGTCAACTTCCCGAGTTTCCCACAGTGCTAACTCTGACCCTGTC | + |
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Preference number: 1 (lower is better) Translates to: SCLGSSMSFSPGKPA*STSRVSHSANSDPV Trigger: GACAGGGTCAGAGTTAGCACTGTGGGAAACTCGGGAAGTTGAGCATGCTGGTTTGCCTGGGCTGAAACTCATGGAGCTCCCTAGACAGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| 3UTR GCA 90 bp | TCCAGACTGTCTGACCCTTTGATTTGGTTAGCAAAACTCTTCGTTTaGATTATGTTTGACTCCTCTGTCACCTTTAAACGACCCAAGTTA | + |
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Preference number: 1 (lower is better) Translates to: SRLSDPLIWLAKLFV*IMFDSSVTFKRPKL Trigger: TAACTTGGGTCGTTTAAAGGTGACAGAGGAGTCAAACATAATGCAAACGAAGAGTTTTGCTAACCAAATCAAAGGGTCAGACAGTCTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| 3UTR CCA 72 bp | CAGCCTGAGCCATCCAGACTGTCTGACCCTTTGATTTaGTTAGCAAAACTCTTCGTTTGCATTATGTTTGAC | + |
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Preference number: 3 (lower is better) Translates to: QPEPSRLSDPLI*LAKLFVCIMFD Trigger: GTCAAACATAATGCAAACGAAGAGTTTTGCTAACCAAATCAAAGGGTCAGACAGTCTGGATGGCTCAGGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| 3UTR GCA 72 bp | TCTGACCCTTTGATTTGGTTAGCAAAACTCTTCGTTTaGATTATGTTTGACTCCTCTGTCACCTTTAAACGA | + |
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Preference number: 3 (lower is better) Translates to: SDPLIWLAKLFV*IMFDSSVTFKR Trigger: TCGTTTAAAGGTGACAGAGGAGTCAAACATAATGCAAACGAAGAGTTTTGCTAACCAAATCAAAGGGTCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR TCA 90 bp | TCTGACCCTGTCTACAGTGTCCTTCCTCCCTTGCCTAGATGGGTGATGGATGGGTGTAGTGGGGGAGGCTaGGGTACCATATCACCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SDPVYSVLPPLPRWVMDGCSGGG*GTISPG Trigger: TCCTGGTGATATGGTACCTCAGCCTCCCCCACTACA...CCCATCCATCACCCATCTAGGCAAGGGAGGAAGGACACTGTAGACAGGGTCAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR GCA 90 bp | TCTGACCCTGTCTACAGTGTCCTTCCTCCCTTGCCTAGATGGGTGATGGATGGGTCTTCCCTTTCAGCCTaGTGGCCTAGTAAGAAAAAC | + |
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Preference number: 4 (lower is better) Translates to: SDPVYSVLPPLPRWVMDGSSLSA*WPSKKN Trigger: GTTTTTCTTACTAGGCCAGCAGGCTGAAAGGGAAGA...CCCATCCATCACCCATCTAGGCAAGGGAGGAAGGACACTGTAGACAGGGTCAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR TCA 90 bp | AAGCAATCACTAAGTTCAGGCCTTGACTCCTGTCTAGGGAGCTCCATGAGTTTCCTTGAGGGATCTCAGTaGCATCCTATTGGGAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: KQSLSSGLDSCLGSSMSFLEGSQ*HPIGKG Trigger: GCCCTTCCCAATAGGATGTCACTGAGATCCCTCAAG...GAAACTCATGGAGCTCCCTAGACAGGAGTCAAGGCCTGAACTTAGTGATTGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR TCA 90 bp | AAGCAATCACTAAGTTCAGGCCTTGACTCCTGTCTAGGGAGCTCCATGAGTTTCGTGAGGTCACCAGGATaGCCAGGAATGGGTTCTGAT | + |
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Preference number: 4 (lower is better) Translates to: KQSLSSGLDSCLGSSMSFVRSPG*PGMGSD Trigger: ATCAGAACCCATTCCTGGTCATCCTGGTGACCTCAC...GAAACTCATGGAGCTCCCTAGACAGGAGTCAAGGCCTGAACTTAGTGATTGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR TCA 90 bp | AAGCAATCACTAAGTTCAGGCCTTGACTCCTGTCTAGGGAGCTCCATGAGTTTCCTAGTAAGAAAAACGTaGGCACCTCATATCCCCACC | + |
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Preference number: 4 (lower is better) Translates to: KQSLSSGLDSCLGSSMSFLVRKT*APHIPT Trigger: GGTGGGGATATGAGGTGCTCACGTTTTTCTTACTAG...GAAACTCATGGAGCTCCCTAGACAGGAGTCAAGGCCTGAACTTAGTGATTGCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR GCA 90 bp | TCTTTTAGGGAAATCTTAAGAAATTCTAATCTACAGCCTGAGCCATCCAGACTGTGTAGCCCAGCCCGCTaGAGTAGGGAGGGAACACCT | + |
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Preference number: 4 (lower is better) Translates to: SFREILRNSNLQPEPSRLCSPAR*SREGTP Trigger: AGGTGTTCCCTCCCTACTGCAGCGGGCTGGGCTACA...CAGTCTGGATGGCTCAGGCTGTAGATTAGAATTTCTTAAGATTTCCCTAAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR TCA 90 bp | TGCATTATGTTTGACTCCTCTGTCACCTTTAAACGACCCAAGTTAAATTCTGTGGCAGCAGGCTCCACTTaGGGGATCTCAGTGACATCC | + |
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Preference number: 4 (lower is better) Translates to: CIMFDSSVTFKRPKLNSVAAGST*GISVTS Trigger: GGATGTCACTGAGATCCCTCAAGTGGAGCCTGCTGC...CACAGAATTTAACTTGGGTCGTTTAAAGGTGACAGAGGAGTCAAACATAATGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR TCA 90 bp | TGCATTATGTTTGACTCCTCTGTCACCTTTAAACGACCCAAGTTAAATTCTGTGAGGGAGGGAACACCTTaGAGGGGTACTCTTGGTATG | + |
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Preference number: 4 (lower is better) Translates to: CIMFDSSVTFKRPKLNSVREGTP*RGTLGM Trigger: CATACCAAGAGTACCCCTTCAAGGTGTTCCCTCCCT...CACAGAATTTAACTTGGGTCGTTTAAAGGTGACAGAGGAGTCAAACATAATGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| 3UTR CAA 72 bp | AATCTACAGCCTGAGCCATCCAGACTGTCTGACCCTTaGATTTGGTTAGCAAAACTCTTCGTTTGCATTATG | + |
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Preference number: 4 (lower is better) Translates to: NLQPEPSRLSDP*IWLAKLFVCIM Trigger: CATAATGCAAACGAAGAGTTTTGCTAACCAAATCAAAGGGTCAGACAGTCTGGATGGCTCAGGCTGTAGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR TCA 90 bp | TCTTTTAGGGAAATCTTAAGAAATTCTAATCTACAGCCTGAGCCATCCAGACTGAGAAGTACATCCAGTTaGCGCGCTCGATCACATTGT | + |
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Preference number: 4 (lower is better) Translates to: SFREILRNSNLQPEPSRLRSTSS*RARSHC Trigger: ACAATGTGATCGAGCGCGTCAACTGGATGTACTTCT...CAGTCTGGATGGCTCAGGCTGTAGATTAGAATTTCTTAAGATTTCCCTAAAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR GCA 90 bp | TGCATTATGTTTGACTCCTCTGTCACCTTTAAACGACCCAAGTTAAATTCTGTGTTCCTCAGCATCACCTaGCAGAATGTGATGATCTCC | + |
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Preference number: 4 (lower is better) Translates to: CIMFDSSVTFKRPKLNSVFLSIT*QNVMIS Trigger: GGAGATCATCACATTCTGGCAGGTGATGCTGAGGAA...CACAGAATTTAACTTGGGTCGTTTAAAGGTGACAGAGGAGTCAAACATAATGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR TCA 90 bp | CCTTTGATTTGGTTAGCAAAACTCTTCGTTTGCATTATGTTTGACTCCTCTGTCGGGGTACTCTTGGTATaGAATGTGGTTTTTATGGAA | + |
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Preference number: 4 (lower is better) Translates to: PLIWLAKLFVCIMFDSSVGVLLV*NVVFME Trigger: TTCCATAAAAACCACATTTCATACCAAGAGTACCCC...GACAGAGGAGTCAAACATAATGCAAACGAAGAGTTTTGCTAACCAAATCAAAGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR CCA 90 bp | TCTTTTAGGGAAATCTTAAGAAATTCTAATCTACAGCCTGAGCCATCCAGACTGTTGAAGGGGTACTCTTaGTATGAAATGTGGTTTTTA | + |
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Preference number: 4 (lower is better) Translates to: SFREILRNSNLQPEPSRLLKGYS*YEMWFL Trigger: TAAAAACCACATTTCATACCAAGAGTACCCCTTCAA...CAGTCTGGATGGCTCAGGCTGTAGATTAGAATTTCTTAAGATTTCCCTAAAAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR CAA 90 bp | TGCATTATGTTTGACTCCTCTGTCACCTTTAAACGACCCAAGTTAAATTCTGTGAGCAGCAGGCTCCACTaGAGGGATCTCAGTGACATC | + |
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Preference number: 5 (lower is better) Translates to: CIMFDSSVTFKRPKLNSVSSRLH*RDLSDI Trigger: GATGTCACTGAGATCCCTCAAGTGGAGCCTGCTGCT...CACAGAATTTAACTTGGGTCGTTTAAAGGTGACAGAGGAGTCAAACATAATGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR CAA 90 bp | TCTTTTAGGGAAATCTTAAGAAATTCTAATCTACAGCCTGAGCCATCCAGACTGGACAGGGCTAACGTTTaGTCTTCCCTTTCAGCCTGC | + |
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Preference number: 5 (lower is better) Translates to: SFREILRNSNLQPEPSRLDRANV*SSLSAC Trigger: GCAGGCTGAAAGGGAAGACAAAACGTTAGCCCTGTC...CAGTCTGGATGGCTCAGGCTGTAGATTAGAATTTCTTAAGATTTCCCTAAAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR CAA 90 bp | TGCATTATGTTTGACTCCTCTGTCACCTTTAAACGACCCAAGTTAAATTCTGTGCTCAGTGACATCCTATaGGGAAGGGCAGTCAAGACA | + |
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Preference number: 5 (lower is better) Translates to: CIMFDSSVTFKRPKLNSVLSDIL*GRAVKT Trigger: TGTCTTGACTGCCCTTCCCAATAGGATGTCACTGAG...CACAGAATTTAACTTGGGTCGTTTAAAGGTGACAGAGGAGTCAAACATAATGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS-3UTR CAA 90 bp | TCTTTTAGGGAAATCTTAAGAAATTCTAATCTACAGCCTGAGCCATCCAGACTGAGTCTTGTCTGTAAATaGGCTCATACTCATAGAAGT | + |
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Preference number: 5 (lower is better) Translates to: SFREILRNSNLQPEPSRLSLVCK*AHTHRS Trigger: ACTTCTATGAGTATGAGCCAATTTACAGACAAGACT...CAGTCTGGATGGCTCAGGCTGTAGATTAGAATTTCTTAAGATTTCCCTAAAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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| CDS CAA 72 bp | AGAACGTGCTCATCCTCCAAGGACAGGGCTAACGTTTaGTCTTCCCTTTCAGCCTGCTGGCCTAGTAAGAAA | + |
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Preference number: 6 (lower is better) Translates to: RTCSSSKDRANV*SSLSACWPSKK Trigger: TTTCTTACTAGGCCAGCAGGCTGAAAGGGAAGACAAAACGTTAGCCCTGTCCTTGGAGGATGAGCACGTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061826.3 |
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