RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AXIN2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000142

Ensembl transcript IDs: ENSMUST00000052915.14, ENSMUST00000106711.2, ENSMUST00000140821.2, ENSMUST00000144511.2, ENSMUST00000152909.2

Found 267 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAAACCCGAGCGATCGCCAAGGGGAAGGTAACAGAGGAGAGGTGCTaGTGGGTGCCCGTGTCCTCGCAGGGTCAGGTGGGCGAGGGTAGA +
Preference number: 1 (lower is better)
Translates to: QTRAIAKGKVTEERC*WVPVSSQGQVGEGR
Trigger: TCTACCCTCGCCCACCTGACCCTGCGAGGACACGGGCACCCAGCAGCACCTCTCCTCTGTTACCTTCCCCTTGGCGATCGCTCGGGTTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR TCA 90 bp GGCGCACGGACGGAGCGGGTCCCCGTGCCTGTACAGGTACTGTCCTaGTTCCCAAGTCAAGCACTAGCCAGTGGGTCAACGCTCTGCCCT +
Preference number: 1 (lower is better)
Translates to: GARTERVPVPVQVLS*FPSQALASGSTLCP
Trigger: AGGGCAGAGCGTTGACCCACTGGCTAGTGCTTGACTTGGGAATCAGGACAGTACCTGTACAGGCACGGGGACCCGCTCCGTCCGTGCGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR TCA 90 bp GTACCCAGGCTCCTGGAGACTGAAGATCAACTACCCCCGCCCTCCTaGAGGCCCAGGCGCCAGTCCCTCCCTAGGCTTTGTCTTCTTAAT +
Preference number: 1 (lower is better)
Translates to: VPRLLETEDQLPPPS*RPRRQSLPRLCLLN
Trigger: ATTAAGAAGACAAAGCCTAGGGAGGGACTGGCGCCTGGGCCTTCAGGAGGGCGGGGGTAGTTGATCTTCAGTCTCCAGGAGCCTGGGTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR TCA 90 bp AATAGTTCAGGCTTTTCTCATCTCGGTACCCAGGCTCCTGGAGACTaGAGATCAACTACCCCCGCCCTCCTGAAGGCCCAGGCGCCAGTC +
Preference number: 1 (lower is better)
Translates to: NSSGFSHLGTQAPGD*RSTTPALLKAQAPV
Trigger: GACTGGCGCCTGGGCCTTCAGGAGGGCGGGGGTAGTTGATCTTCAGTCTCCAGGAGCCTGGGTACCGAGATGAGAAAAGCCTGAACTATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR CCA 90 bp GCCTGTACAGGTACTGTCCTGATTCCCAAGTCAAGCACTAGCCAGTaGGTCAACGCTCTGCCCTACACTATACACAGGCCTATAGTACAG +
Preference number: 1 (lower is better)
Translates to: ACTGTVLIPKSSTSQ*VNALPYTIHRPIVQ
Trigger: CTGTACTATAGGCCTGTGTATAGTGTAGGGCAGAGCGTTGACCCACTGGCTAGTGCTTGACTTGGGAATCAGGACAGTACCTGTACAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR CCA 90 bp GCAGATTCCTCTGTTAACGAAGAAATGATTAATGCATTCCCGGCTTaGCTCCTAAGCGTGGACAGCAATCCAAACTTCTCACTCCCACTT +
Preference number: 1 (lower is better)
Translates to: ADSSVNEEMINAFPA*LLSVDSNPNFSLPL
Trigger: AAGTGGGAGTGAGAAGTTTGGATTGCTGTCCACGCTTAGGAGCCAAGCCGGGAATGCATTAATCATTTCTTCGTTAACAGAGGAATCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR-3UTR CCA 90 bp CAAGGGAGAGCTGGAGCCCTCAATATAGGGCGGCGCACGGACGGAGCGGGTCCCCCCACTCCCCCACTCTaGATGGTCCCCAAAGTGGTG +
Preference number: 2 (lower is better)
Translates to: QGRAGALNIGRRTDGAGPPTPPL*MVPKVV
Trigger: CACCACTTTGGGGACCATCCAGAGTGGGGGAGTGGG...GGGACCCGCTCCGTCCGTGCGCCGCCCTATATTGAGGGCTCCAGCTCTCCCTTG
66% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR-3UTR TCA 90 bp AGAGCTGGAGCCCTCAATATAGGGCGGCGCACGGACGGAGCGGGTCCCCGTGCCGAGGCAGAAGAAGCTTaGACCACAAGGGCTGTGACG +
Preference number: 2 (lower is better)
Translates to: RAGALNIGRRTDGAGPRAEAEEA*TTRAVT
Trigger: CGTCACAGCCCTTGTGGTTCAAGCTTCTTCTGCCTC...GGCACGGGGACCCGCTCCGTCCGTGCGCCGCCCTATATTGAGGGCTCCAGCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR-3UTR TCA 90 bp CCCACTCCCCCACTCTGGATGGTCCCCAAAGTGGTGAAGATGCTGTCACAACCACCCACAGGACGTCTGTaGCAAGCAGAGCAGCATGGC +
Preference number: 2 (lower is better)
Translates to: PTPPLWMVPKVVKMLSQPPTGRL*QAEQHG
Trigger: GCCATGCTGCTCTGCTTGTCACAGACGTCCTGTGGG...TGGTTGTGACAGCATCTTCACCACTTTGGGGACCATCCAGAGTGGGGGAGTGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR-3UTR CCA 90 bp AGCCTTTGGCTCCAGGGTGAAGTCTCCCCCACTCCCCCACTCTGGATGGTCCCCAAGCCTGTCTTCACTTaGAGAAATGCCATGCAGAGC +
Preference number: 2 (lower is better)
Translates to: SLWLQGEVSPTPPLWMVPKPVFT*RNAMQS
Trigger: GCTCTGCATGGCATTTCTCCAAGTGAAGACAGGCTT...GGGGACCATCCAGAGTGGGGGAGTGGGGGAGACTTCACCCTGGAGCCAAAGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR-3UTR GCA 90 bp TTATACATAAACCCCTTTCAAAAACCAAGGGAGAGCTGGAGCCCTCAATATAGGCTTGGAGAAATGCCATaGAGAGCAGATTCCTCTGTT +
Preference number: 2 (lower is better)
Translates to: LYINPFQKPRESWSPQYRLGEMP*RADSSV
Trigger: AACAGAGGAATCTGCTCTGCATGGCATTTCTCCAAG...CCTATATTGAGGGCTCCAGCTCTCCCTTGGTTTTTGAAAGGGGTTTATGTATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR GCA 72 bp GGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTaGACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAG +
Preference number: 3 (lower is better)
Translates to: GLRQGLWASAPW*TPRCLPRLHAE
Trigger: CTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
3UTR GCA 72 bp GCGATCGCCAAGGGGAAGGTAACAGAGGAGAGGTGCTaGTGGGTGCCCGTGTCCTCGCAGGGTCAGGTGGGC +
Preference number: 3 (lower is better)
Translates to: AIAKGKVTEERC*WVPVSSQGQVG
Trigger: GCCCACCTGACCCTGCGAGGACACGGGCACCCAGCAGCACCTCTCCTCTGTTACCTTCCCCTTGGCGATCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR CCA 72 bp GTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATaGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCC +
Preference number: 3 (lower is better)
Translates to: VGLRQGLWASAP*CTPRCLPRLHA
Trigger: GGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
3UTR GCA 72 bp CGAGCGATCGCCAAGGGGAAGGTAACAGAGGAGAGGTaGTGCTGGGTGCCCGTGTCCTCGCAGGGTCAGGTG +
Preference number: 3 (lower is better)
Translates to: RAIAKGKVTEER*CWVPVSSQGQV
Trigger: CACCTGACCCTGCGAGGACACGGGCACCCAGCAGCACCTCTCCTCTGTTACCTTCCCCTTGGCGATCGCTCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR CCA 72 bp TTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTaGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTTG +
Preference number: 3 (lower is better)
Translates to: FRGCCVGLRQGL*ASAPWCTPRCL
Trigger: CAAGCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
3UTR GCA 72 bp CAATATAGGGCGGCGCACGGACGGAGCGGGTCCCCGTaGCTGTACAGGTACTGTCCTGATTCCCAAGTCAAG +
Preference number: 3 (lower is better)
Translates to: QYRAAHGRSGSP*LYRYCPDSQVK
Trigger: CTTGACTTGGGAATCAGGACAGTACCTGTACAGGCACGGGGACCCGCTCCGTCCGTGCGCCGCCCTATATTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR TCA 72 bp GGCTTTTCTCATCTCGGTACCCAGGCTCCTGGAGACTaGAGATCAACTACCCCCGCCCTCCTGAAGGCCCAG +
Preference number: 3 (lower is better)
Translates to: GFSHLGTQAPGD*RSTTPALLKAQ
Trigger: CTGGGCCTTCAGGAGGGCGGGGGTAGTTGATCTTCAGTCTCCAGGAGCCTGGGTACCGAGATGAGAAAAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR TCA 72 bp ACGGAGCGGGTCCCCGTGCCTGTACAGGTACTGTCCTaGTTCCCAAGTCAAGCACTAGCCAGTGGGTCAACG +
Preference number: 3 (lower is better)
Translates to: TERVPVPVQVLS*FPSQALASGST
Trigger: CGTTGACCCACTGGCTAGTGCTTGACTTGGGAATCAGGACAGTACCTGTACAGGCACGGGGACCCGCTCCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR-3UTR CAA 90 bp TTTTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGAGGTGCTTGCCCAGGTaGCACGCCGAGGAGGCCAAG +
Preference number: 3 (lower is better)
Translates to: FSFRIFRGCCVGLRQGLWRCLPR*HAEEAK
Trigger: CTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCT...CCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
3UTR TCA 72 bp CTAAAGAGGCAGAAGAAGCTTGAACCACAAGGGCTGTaGCGGGCTCTGGGACTACACGTACGGTGTAGCCTT +
Preference number: 3 (lower is better)
Translates to: LKRQKKLEPQGL*RALGLHVRCSL
Trigger: AAGGCTACACCGTACGTGTAGTCCCAGAGCCCGTCACAGCCCTTGTGGTTCAAGCTTCTTCTGCCTCTTTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR CCA 72 bp GGTACTGTCCTGATTCCCAAGTCAAGCACTAGCCAGTaGGTCAACGCTCTGCCCTACACTATACACAGGCCT +
Preference number: 3 (lower is better)
Translates to: GTVLIPKSSTSQ*VNALPYTIHRP
Trigger: AGGCCTGTGTATAGTGTAGGGCAGAGCGTTGACCCACTGGCTAGTGCTTGACTTGGGAATCAGGACAGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR CCA 72 bp TTATACATAAACCCCTTTCAAAAACCAAGGGAGAGCTaGAGCCCTCAATATAGGGCGGCGCACGGACGGAGC +
Preference number: 3 (lower is better)
Translates to: LYINPFQKPRES*SPQYRAAHGRS
Trigger: GCTCCGTCCGTGCGCCGCCCTATATTGAGGGCTCCAGCTCTCCCTTGGTTTTTGAAAGGGGTTTATGTATAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
3UTR-3UTR CAA 90 bp TCACTTGGAGAAATGCCATGCAGAGCAGATTCCTCTGTTAACGAAGAAATGATTAGGTGCTTGCCCAGGTaGCACGCCGAGGAGGCCAAG +
Preference number: 3 (lower is better)
Translates to: SLGEMPCRADSSVNEEMIRCLPR*HAEEAK
Trigger: CTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCT...AATCATTTCTTCGTTAACAGAGGAATCTGCTCTGCATGGCATTTCTCCAAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR TCA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGGACAGCCGGGGGTCTTaGGGACCCTGGAGAGGTGGT +
Preference number: 4 (lower is better)
Translates to: LHGARRGACPGCTPRRPRDSRGS*GPWRGG
Trigger: ACCACCTCTCCAGGGTCCTCAAGACCCCCGGCTGTC...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGGTGCTGGTGGTGGTaGTCGGGGGAGCGGGACCGT +
Preference number: 4 (lower is better)
Translates to: CVGLRQGLWASAPWCTPRWCWWW*SGERDR
Trigger: ACGGTCCCGCTCCCCCGACCACCACCACCAGCACCA...CCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GGGAGAGCTGGAGCCCTCAATATAGGGCGGCGCACGGACGGAGCGGGTCCCCGTACCAGCTCACTGGCCTaGAGCGCGTGGACACTTGCC +
Preference number: 4 (lower is better)
Translates to: GRAGALNIGRRTDGAGPRTSSLA*SAWTLA
Trigger: GGCAAGTGTCCACGCGCTCCAGGCCAGTGAGCTGGT...ACGGGGACCCGCTCCGTCCGTGCGCCGCCCTATATTGAGGGCTCCAGCTCTCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR TCA 90 bp GGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTTGGACAGCCGGGGGTCTTaGGGACCCTGGAGAGGTGGT +
Preference number: 4 (lower is better)
Translates to: GLRQGLWASAPWCTPRCLDSRGS*GPWRGG
Trigger: ACCACCTCTCCAGGGTCCTCAAGACCCCCGGCTGTC...CAAGCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp GGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTTGTGGGTTGGCGAAGGGTaGGGCTCCTGCCTGACCAGC +
Preference number: 4 (lower is better)
Translates to: GLRQGLWASAPWCTPRCLWVGEG*GSCLTS
Trigger: GCTGGTCAGGCAGGAGCCTCACCCTTCGCCAACCCA...CAAGCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp GTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCGGGCTTCGACACCTCTaGCAGCCTGCGGCAGGCTTC +
Preference number: 4 (lower is better)
Translates to: VGLRQGLWASAPWCTPRCGLRHL*QPAAGF
Trigger: GAAGCCTGCCGCAGGCTGGCAGAGGTGTCGAAGCCC...GCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CCAAGGGAGAGCTGGAGCCCTCAATATAGGGCGGCGCACGGACGGAGCGGGTCCAGGGTCCTGGGTAAATaGGTGAGCCCGGGCCACCGA +
Preference number: 4 (lower is better)
Translates to: PRESWSPQYRAAHGRSGSRVLGK*VSPGHR
Trigger: TCGGTGGCCCGGGCTCACCCATTTACCCAGGACCCT...GGACCCGCTCCGTCCGTGCGCCGCCCTATATTGAGGGCTCCAGCTCTCCCTTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CCA 90 bp GCTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGAGCCAGGCTTGGGTTaGCGAAGGGTGAGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: APWCTPRCLPRLHAEEAKEPGLG*RRVRLL
Trigger: CAGGAGCCTCACCCTTCGCCAACCCAAGCCTGGCTC...CTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp GTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTTGCCCACACTAGGCTaGCACGGTGGGGTCTCCCCT +
Preference number: 4 (lower is better)
Translates to: VGLRQGLWASAPWCTPRCLPTLG*HGGVSP
Trigger: AGGGGAGACCCCACCGTGTCAGCCTAGTGTGGGCAA...GCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp TGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGTGGGTTGGCGAAGGGTaGGGCTCCTGCCTGACCAGC +
Preference number: 4 (lower is better)
Translates to: CCVGLRQGLWASAPWCTPWVGEG*GSCLTS
Trigger: GCTGGTCAGGCAGGAGCCTCACCCTTCGCCAACCCA...CGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGGGCGCTGGTGGCTGGTaGAAAGACATAGCCGGAACC +
Preference number: 4 (lower is better)
Translates to: LHGARRGACPGCTPRRPRGAGGW*KDIAGT
Trigger: GGTTCCGGCTATGTCTTTGCACCAGCCACCAGCGCC...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp AGAGCTGGAGCCCTCAATATAGGGCGGCGCACGGACGGAGCGGGTCCCCGTGCCACTAGGCTGACACGGTaGGGTCTCCCCTTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: RAGALNIGRRTDGAGPRATRLTR*GLPFFS
Trigger: GGAGAAGAAGGGGAGACCCCACCGTGTCAGCCTAGT...GGCACGGGGACCCGCTCCGTCCGTGCGCCGCCCTATATTGAGGGCTCCAGCTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CCA 90 bp GTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCCAGCACCGCTGCTTCTaGGGCTTCGACACCTCTGCC +
Preference number: 4 (lower is better)
Translates to: VGLRQGLWASAPWCTPRCQHRCF*GFDTSA
Trigger: GGCAGAGGTGTCGAAGCCCCAGAAGCAGCGGTGCTG...GCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGGAGCCAGGCTTGGGTTaGCGAAGGGTGAGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: RRPETGSLGFGSMVHAEVEPGLG*RRVRLL
Trigger: CAGGAGCCTCACCCTTCGCCAACCCAAGCCTGGCTC...CACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGCCCAGGGTCAAGCTTTaGGCCTTCAGCATCCTCCTG +
Preference number: 4 (lower is better)
Translates to: LHGARRGACPGCTPRRPRPRVKL*AFSILL
Trigger: CAGGAGGATGCTGAAGGCTCAAAGCTTGACCCTGGG...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp GGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTTGTCCTCCCGGATCTGCTaGAGCCGCTCCTCCAGACTA +
Preference number: 4 (lower is better)
Translates to: GLRQGLWASAPWCTPRCLSSRIC*SRSSRL
Trigger: TAGTCTGGAGGAGCGGCTGCAGCAGATCCGGGAGGA...CAAGCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp GTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTCCTCCCGGATCTGCTaGAGCCGCTCCTCCAGACTA +
Preference number: 4 (lower is better)
Translates to: VGLRQGLWASAPWCTPRCSSRIC*SRSSRL
Trigger: TAGTCTGGAGGAGCGGCTGCAGCAGATCCGGGAGGA...GCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp GCTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGCGTGAGCTCAGGGCCTaGTCAGACCCCTCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: APWCTPRCLPRLHAEEAKRELRA*SDPSFS
Trigger: AGAAAAGGAGGGGTCTGAGCAGGCCCTGAGCTCACG...CTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CAAGGGAGAGCTGGAGCCCTCAATATAGGGCGGCGCACGGACGGAGCGGGTCCCCCTCGATCTCCTCCTTaGTCTTGGGGACAGCGTGGT +
Preference number: 4 (lower is better)
Translates to: QGRAGALNIGRRTDGAGPPRSPP*SWGQRG
Trigger: ACCACGCTGTCCCCAAGACCAAGGAGGAGATCGAGG...GGGACCCGCTCCGTCCGTGCGCCGCCCTATATTGAGGGCTCCAGCTCTCCCTTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CCA 90 bp GGGAGAGCTGGAGCCCTCAATATAGGGCGGCGCACGGACGGAGCGGGTCCCCGTAGCGGACTCTCTGTGTaGCTTCTGCCTCGATCTCCT +
Preference number: 4 (lower is better)
Translates to: GRAGALNIGRRTDGAGPRSGLSV*LLPRSP
Trigger: AGGAGATCGAGGCAGAAGCCACACAGAGAGTCCGCT...ACGGGGACCCGCTCCGTCCGTGCGCCGCCCTATATTGAGGGCTCCAGCTCTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CCA 90 bp GGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCAGCACCGCTGCTTCTaGGGCTTCGACACCTCTGCC +
Preference number: 4 (lower is better)
Translates to: GCCVGLRQGLWASAPWCTQHRCF*GFDTSA
Trigger: GGCAGAGGTGTCGAAGCCCCAGAAGCAGCGGTGCTG...CGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGGTGAGAGTTTGCACTTaGGGTCGGCACACGTCCACT +
Preference number: 4 (lower is better)
Translates to: LHGARRGACPGCTPRRPRVRVCT*GRHTST
Trigger: AGTGGACGTGTGCCGACCTCAAGTGCAAACTCTCAC...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp TGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGCATCCTCGCGGAAGCTaGTGCTGGGATCTGGAAGGA +
Preference number: 4 (lower is better)
Translates to: CVGLRQGLWASAPWCTPRHPRGS*CWDLEG
Trigger: TCCTTCCAGATCCCAGCAGCAGCTTCCGCGAGGATG...CCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp TGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGGGCGCTGGTGGCTGGTaGAAAGACATAGCCGGAACC +
Preference number: 4 (lower is better)
Translates to: CCVGLRQGLWASAPWCTPGAGGW*KDIAGT
Trigger: GGTTCCGGCTATGTCTTTGCACCAGCCACCAGCGCC...CGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp GGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGTCATCCTCCCGGATCTaGTGCAGCCGCTCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: GCCVGLRQGLWASAPWCTSSSRI*CSRSSR
Trigger: TCTGGAGGAGCGGCTGCAGCAGATCCGGGAGGATGA...CGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGCCCTTTTTGCTGAGCTaGTCCTTGAAGTGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: LHGARRGACPGCTPRRPRPFLLS*SLKWPR
Trigger: CCTGGGCCACTTCAAGGAGCAGCTCAGCAAAAAGGG...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGAAGACTTGGTCCACCTaGTCAAAGGGGAATCGGGGG +
Preference number: 4 (lower is better)
Translates to: LHGARRGACPGCTPRRPRKTWST*SKGNRG
Trigger: CCCCCGATTCCCCTTTGACCAGGTGGACCAAGTCTT...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GCTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGATCTCGGTCTGTGCCTaGTCAAACATGACCGAGCCG +
Preference number: 4 (lower is better)
Translates to: APWCTPRCLPRLHAEEAKISVCA*SNMTEP
Trigger: CGGCTCGGTCATGTTTGACCAGGCACAGACCGAGAT...CTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTTGTCTCCTCCTTGGTCTTaGGGACAGCGTGGTGGTGGA +
Preference number: 4 (lower is better)
Translates to: GLRQGLWASAPWCTPRCLSPPWS*GQRGGG
Trigger: TCCACCACCACGCTGTCCCCAAGACCAAGGAGGAGA...CAAGCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTTGCCTCGATCTCCTCCTTaGTCTTGGGGACAGCGTGGT +
Preference number: 4 (lower is better)
Translates to: GLRQGLWASAPWCTPRCLPRSPP*SWGQRG
Trigger: ACCACGCTGTCCCCAAGACCAAGGAGGAGATCGAGG...CAAGCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp AGCCTTTGGCTCCAGGGTGAAGTCTCCCCCACTCCCCCACTCTGGATGGTCCCCGGGCACTATGGGGCTTaGACTTGCTCTGCCGCTCAC +
Preference number: 4 (lower is better)
Translates to: SLWLQGEVSPTPPLWMVPGHYGA*TCSAAH
Trigger: GTGAGCGGCAGAGCAAGTCCAAGCCCCATAGTGCCC...GGGGACCATCCAGAGTGGGGGAGTGGGGGAGACTTCACCCTGGAGCCAAAGGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CCA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGTGCCAAAGTGTTGGGTaGGGTAAGGGGAGGCATTGC +
Preference number: 4 (lower is better)
Translates to: LHGARRGACPGCTPRRPRCQSVG*GKGRHC
Trigger: GCAATGCCTCCCCTTACCCCACCCAACACTTTGGCA...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGCTGGCCTGGAGCGCGTaGACACTTGCCAGTTTCTTT +
Preference number: 4 (lower is better)
Translates to: LHGARRGACPGCTPRRPRLAWSA*TLASFF
Trigger: AAAGAAACTGGCAAGTGTCCACGCGCTCCAGGCCAG...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp GTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCGTGAGAGTTTGCACTTaGGGTCGGCACACGTCCACT +
Preference number: 4 (lower is better)
Translates to: VGLRQGLWASAPWCTPRCVRVCT*GRHTST
Trigger: AGTGGACGTGTGCCGACCTCAAGTGCAAACTCTCAC...GCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp TGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGGCCAACCACGGTGGGTaGGAGTTTGCACTTGAGGTC +
Preference number: 4 (lower is better)
Translates to: CCVGLRQGLWASAPWCTPANHGG*EFALEV
Trigger: GACCTCAAGTGCAAACTCTCACCCACCGTGGTTGGC...CGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp GGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGGCCAACCACGGTGGGTaGGAGTTTGCACTTGAGGTC +
Preference number: 4 (lower is better)
Translates to: GCCVGLRQGLWASAPWCTANHGG*EFALEV
Trigger: GACCTCAAGTGCAAACTCTCACCCACCGTGGTTGGC...CGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGGCCTTCACACTGCGATaGATCTCTCTCTGGAGCTGT +
Preference number: 4 (lower is better)
Translates to: LHGARRGACPGCTPRRPRAFTLR*ISLWSC
Trigger: ACAGCTCCAGAGAGAGATGCATCGCAGTGTGAAGGC...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp AATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCAGGAGGGCCAGGGGGTaGTGGACCGGTGCTCCATCC +
Preference number: 4 (lower is better)
Translates to: NISWLLRRPETGSLGFGSRRARG*WTGAPS
Trigger: GGATGGAGCACCGGTCCAGCACCCCCTGGCCCTCCT...GGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp ATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGGGCTTCGACACCTCTaGCAGCCTGCGGCAGGCTTC +
Preference number: 4 (lower is better)
Translates to: ISWLLRRPETGSLGFGSMGLRHL*QPAAGF
Trigger: GAAGCCTGCCGCAGGCTGGCAGAGGTGTCGAAGCCC...CATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTTGGTATGTAGGTCTTGGTaGCGGGCTTCAGCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: GLRQGLWASAPWCTPRCLVCRSW*RASAAW
Trigger: CCAAGCAGCTGAAGCCCGCCACCAAGACCTACATAC...CAAGCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTCGTATGTAGGTCTTaGTGGCGGGCTTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: RRPETGSLGFGSMVHAEVLVCRS*WRASAA
Trigger: AGCAGCTGAAGCCCGCCACCAAGACCTACATACGAG...CACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGTCCTCCATCACTGCCTaGATCTCGGTCTGTGCCTGG +
Preference number: 4 (lower is better)
Translates to: GCCVGLRQGLWASAPWCTSSITA*ISVCAW
Trigger: CCAGGCACAGACCGAGATCCAGGCAGTGATGGAGGA...CGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GCTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGTTTCAGCTGTTTCCGTaGATCTCACACTCGCGGTGG +
Preference number: 4 (lower is better)
Translates to: APWCTPRCLPRLHAEEAKFQLFP*ISHSRW
Trigger: CCACCGCGAGTGTGAGATCCACGGAAACAGCTGAAA...CTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGTCGTTGGCGCTGGTaGCTGGTGCAAAGACATAGC +
Preference number: 4 (lower is better)
Translates to: CVGLRQGLWASAPWCTPRCRWRW*LVQRHS
Trigger: GCTATGTCTTTGCACCAGCCACCAGCGCCAACGACA...CCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CCCACTCCCCCACTCTGGATGGTCCCCAAAGTGGTGAAGATGCTGTCACAACCAGGGGGAGCGGGACCGTaGGCTATAGCGACCCACACC +
Preference number: 4 (lower is better)
Translates to: PTPPLWMVPKVVKMLSQPGGAGP*AIATHT
Trigger: GGTGTGGGTCGCTATAGCCCACGGTCCCGCTCCCCC...TGGTTGTGACAGCATCTTCACCACTTTGGGGACCATCCAGAGTGGGGGAGTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CCA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGGCTTCGTCGTCTGTTTaGTCAGGAAGCTCTTGCCTC +
Preference number: 4 (lower is better)
Translates to: LHGARRGACPGCTPRRPRASSSV*SGSSCL
Trigger: GAGGCAAGAGCTTCCTGACCAAACAGACGACGAAGC...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp GGGAGAGCTGGAGCCCTCAATATAGGGCGGCGCACGGACGGAGCGGGTCCCCGTCGATCTGTTGCTTCTTaGTGCCATCTCGTATGTAGG +
Preference number: 4 (lower is better)
Translates to: GRAGALNIGRRTDGAGPRRSVAS*CHLVCR
Trigger: CCTACATACGAGATGGCATCAAGAAGCAACAGATCG...ACGGGGACCCGCTCCGTCCGTGCGCCGCCCTATATTGAGGGCTCCAGCTCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR GCA 90 bp GGCTTGGCTCCTAAGCGTGGACAGCAATCCAAACTTCTCACTCCCACTTCCAGGAGGAGGGCCAGGGGGTaGTGGACCGGTGCTCCATCC +
Preference number: 4 (lower is better)
Translates to: GLAPKRGQQSKLLTPTSRRRARG*WTGAPS
Trigger: GGATGGAGCACCGGTCCAGCACCCCCTGGCCCTCCT...CCTGGAAGTGGGAGTGAGAAGTTTGGATTGCTGTCCACGCTTAGGAGCCAAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR GCA 90 bp CGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTCTCTAACATCCACTaGCAGACATCCTGTGACCGG +
Preference number: 4 (lower is better)
Translates to: RRPETGSLGFGSMVHAEVLSNIH*QTSCDR
Trigger: CCGGTCACAGGATGTCTGGCAGTGGATGTTAGAGAG...CACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CCA 90 bp AGCCTTTGGCTCCAGGGTGAAGTCTCCCCCACTCCCCCACTCTGGATGGTCCCCATCTCGGTCTGTGCCTaGTCAAACATGACCGAGCCG +
Preference number: 4 (lower is better)
Translates to: SLWLQGEVSPTPPLWMVPISVCA*SNMTEP
Trigger: CGGCTCGGTCATGTTTGACCAGGCACAGACCGAGAT...GGGGACCATCCAGAGTGGGGGAGTGGGGGAGACTTCACCCTGGAGCCAAAGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CCA 90 bp CGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCGCTACTGTCCGTCATaGACATGGAATCGTCGGTCA +
Preference number: 4 (lower is better)
Translates to: RRPETGSLGFGSMVHAEVRYCPS*TWNRRS
Trigger: TGACCGACGATTCCATGTCCATGACGGACAGTAGCG...CACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCCGCTACTGTCCGTCATaGACATGGAATCGTCGGTCA +
Preference number: 4 (lower is better)
Translates to: VGLRQGLWASAPWCTPRCRYCPS*TWNRRS
Trigger: TGACCGACGATTCCATGTCCATGACGGACAGTAGCG...GCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGGAGACACTTGGCCATTaGCCTTCACACTGCGATGCA +
Preference number: 4 (lower is better)
Translates to: CVGLRQGLWASAPWCTPRETLGH*PSHCDA
Trigger: TGCATCGCAGTGTGAAGGCCAATGGCCAAGTGTCTC...CCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp AGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTGGGGGAGCGGGACCGTaGGCTATAGCGACCCACACC +
Preference number: 4 (lower is better)
Translates to: RIFRGCCVGLRQGLWASAGGAGP*AIATHT
Trigger: GGTGTGGGTCGCTATAGCCCACGGTCCCGCTCCCCC...AGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGCGGACTCTCTGTGTaGCTTCTGCCTCGATCTCCT +
Preference number: 4 (lower is better)
Translates to: CCVGLRQGLWASAPWCTPSGLSV*LLPRSP
Trigger: AGGAGATCGAGGCAGAAGCCACACAGAGAGTCCGCT...CGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCATGCTTTGGGCACTATaGGGCTTGGACTTGCTCTGC +
Preference number: 4 (lower is better)
Translates to: VGLRQGLWASAPWCTPRCMLWAL*GLDLLC
Trigger: GCAGAGCAAGTCCAAGCCCCATAGTGCCCAAAGCAT...GCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR TCA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGTCAGGTTCATCTGCCTaGACCCATTACAAGCAAACC +
Preference number: 4 (lower is better)
Translates to: LHGARRGACPGCTPRRPRSGSSA*THYKQT
Trigger: GGTTTGCTTGTAATGGGTTCAGGCAGATGAACCTGA...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp GTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTGGGTTCTCGGAAAATaGGGTAGAGACACTTGGCCA +
Preference number: 4 (lower is better)
Translates to: VGLRQGLWASAPWCTPRCWVLGK*GRDTWP
Trigger: TGGCCAAGTGTCTCTACCTCATTTTCCGAGAACCCA...GCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp TGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGATTTTCCTCCATCACTaGCTGGATCTCGGTCTGTGC +
Preference number: 4 (lower is better)
Translates to: CVGLRQGLWASAPWCTPRIFLHH*LDLGLC
Trigger: GCACAGACCGAGATCCAGGCAGTGATGGAGGAAAAT...CCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp CGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCATTGGCCTTCACACTaGGATGCATCTCTCTCTGGA +
Preference number: 4 (lower is better)
Translates to: RRPETGSLGFGSMVHAEVHWPSH*DASLSG
Trigger: TCCAGAGAGAGATGCATCGCAGTGTGAAGGCCAATG...CACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGGGTAGCTCTTTCTTATaGTTTGGGCACTATGGGGCT +
Preference number: 4 (lower is better)
Translates to: LHGARRGACPGCTPRRPRGSSFL*FGHYGA
Trigger: AGCCCCATAGTGCCCAAAGCATAAGAAAGAGCTACC...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CCA 90 bp TGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGCGATGCATCTCTCTCTaGAGCTGTTTCTTACTCCCC +
Preference number: 4 (lower is better)
Translates to: CVGLRQGLWASAPWCTPRRCISL*SCFLLP
Trigger: GGGGAGTAAGAAACAGCTCCAGAGAGAGATGCATCG...CCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCAGGGTCCTGGGTAAATaGGTGAGCCCGGGCCACCGA +
Preference number: 4 (lower is better)
Translates to: QNISWLLRRPETGSLGFGRVLGK*VSPGHR
Trigger: TCGGTGGCCCGGGCTCACCCATTTACCCAGGACCCT...GCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGCTCTTTGTGATCTTCTaGAGCCAGGCTTGGGTTGGC +
Preference number: 4 (lower is better)
Translates to: CCVGLRQGLWASAPWCTPLFVIF*SQAWVG
Trigger: GCCAACCCAAGCCTGGCTCCAGAAGATCACAAAGAG...CGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp CGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGTCAGGTTCATCTGCCTaGACCCATTACAAGCAAACC +
Preference number: 4 (lower is better)
Translates to: RRPETGSLGFGSMVHAEVSGSSA*THYKQT
Trigger: GGTTTGCTTGTAATGGGTTCAGGCAGATGAACCTGA...CACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp CTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCTTCCTGTCCCTCTGCTaGCTGGCCACGCAGCACCGC +
Preference number: 4 (lower is better)
Translates to: LQNISWLLRRPETGSLGFFLSLC*LATQHR
Trigger: GCGGTGCTGCGTGGCCAGTCAGCAGAGGGACAGGAA...GAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp GGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCATTGGCCTTCACACTaGGATGCATCTCTCTCTGGA +
Preference number: 4 (lower is better)
Translates to: GCCVGLRQGLWASAPWCTHWPSH*DASLSG
Trigger: TCCAGAGAGAGATGCATCGCAGTGTGAAGGCCAATG...CGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp ATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGACTAGGCTGACACGGTaGGGTCTCCCCTTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: ISWLLRRPETGSLGFGSMTRLTR*GLPFFS
Trigger: GGAGAAGAAGGGGAGACCCCACCGTGTCAGCCTAGT...CATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGAGGTATGCACCATCCTaGTCACCCAACAAGGAGTGT +
Preference number: 4 (lower is better)
Translates to: GCCVGLRQGLWASAPWCTRYAPS*SPNKEC
Trigger: ACACTCCTTGTTGGGTGACCAGGATGGTGCATACCT...CGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GGGAGAGCTGGAGCCCTCAATATAGGGCGGCGCACGGACGGAGCGGGTCCCCGTCAGCATCCTCCTGTATaGAATTTCTTCTCCACAGAA +
Preference number: 4 (lower is better)
Translates to: GRAGALNIGRRTDGAGPRQHPPV*NFFSTE
Trigger: TTCTGTGGAGAAGAAATTCCATACAGGAGGATGCTG...ACGGGGACCCGCTCCGTCCGTGCGCCGCCCTATATTGAGGGCTCCAGCTCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR TCA 90 bp ACTCCCCCACTCTGGATGGTCCCCAAAGTGGTGAAGATGCTGTCACAACCAACCCTGCCAGACATCCTGTaGCCGGTCTCCTTCTTCCCC +
Preference number: 4 (lower is better)
Translates to: TPPLWMVPKVVKMLSQPTLPDIL*PVSFFP
Trigger: GGGGAAGAAGGAGACCGGTCACAGGATGTCTGGCAG...GGTTGGTTGTGACAGCATCTTCACCACTTTGGGGACCATCCAGAGTGGGGGAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR GCA 90 bp AGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTTCATCCTCCCGGATCTaGTGCAGCCGCTCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: RIFRGCCVGLRQGLWASASSSRI*CSRSSR
Trigger: TCTGGAGGAGCGGCTGCAGCAGATCCGGGAGGATGA...AGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp ATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGGTAAGGGGAGGCATTaGAGGGTCCTGGGTAAATGG +
Preference number: 4 (lower is better)
Translates to: ISWLLRRPETGSLGFGSMGKGRH*RVLGKW
Trigger: CCATTTACCCAGGACCCTGCAATGCCTCCCCTTACC...CATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp GGCTTGGCTCCTAAGCGTGGACAGCAATCCAAACTTCTCACTCCCACTTCCAGGACACCTCTGCCAGCCTaGGGCAGGCTTCCTCTAGCT +
Preference number: 4 (lower is better)
Translates to: GLAPKRGQQSKLLTPTSRTPLPA*GRLPLA
Trigger: AGCTAGAGGAAGCCTGCCGCAGGCTGGCAGAGGTGT...CCTGGAAGTGGGAGTGAGAAGTTTGGATTGCTGTCCACGCTTAGGAGCCAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR GCA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGGGTAGCTCTTTCTTATaGTTTGGGCACAAAACTGCT +
Preference number: 4 (lower is better)
Translates to: LHGARRGACPGCTPRRPRGSSFL*FGHKTA
Trigger: AGCAGTTTTGTGCCCAAAGCATAAGAAAGAGCTACC...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGGTGATAAGGATTGACTaGGTCGCTTCTCTTGAAGGA +
Preference number: 4 (lower is better)
Translates to: CVGLRQGLWASAPWCTPRVIRID*VASLEG
Trigger: TCCTTCAAGAGAAGCGACCCAGTCAATCCTTATCAC...CCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCGTTGGCGCTGGTGGCTaGTGCAAAGACATAGCCGGA +
Preference number: 4 (lower is better)
Translates to: QNISWLLRRPETGSLGFGVGAGG*CKDIAG
Trigger: TCCGGCTATGTCTTTGCACCAGCCACCAGCGCCAAC...GCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCCAGGCGTCATCTCCTTaGGCAGGCGGTGGGTTCTCG +
Preference number: 4 (lower is better)
Translates to: FLQNISWLLRRPETGSLGQASSP*AGGGFS
Trigger: CGAGAACCCACCGCCTGCCCAAGGAGATGACGCCTG...GCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCACCAGCTCACTGGCCTaGAGCGCGTGGACACTTGCC +
Preference number: 4 (lower is better)
Translates to: LQNISWLLRRPETGSLGFTSSLA*SAWTLA
Trigger: GGCAAGTGTCCACGCGCTCCAGGCCAGTGAGCTGGT...GAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp TTTTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGTTCCTGTCCCTCTGCTaGCTGGCCACGCAGCACCGC +
Preference number: 4 (lower is better)
Translates to: FSFRIFRGCCVGLRQGLWFLSLC*LATQHR
Trigger: GCGGTGCTGCGTGGCCAGTCAGCAGAGGGACAGGAA...CCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp AGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCCAGGGTCAAGCTTTaGGCCTTCAGCATCCTCCTG +
Preference number: 4 (lower is better)
Translates to: RIFRGCCVGLRQGLWASAPRVKL*AFSILL
Trigger: CAGGAGGATGCTGAAGGCTCAAAGCTTGACCCTGGG...AGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp ATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGGCTTGGACTTGCTCTaGCGCTCACTCTCTAACATC +
Preference number: 4 (lower is better)
Translates to: ISWLLRRPETGSLGFGSMGLDLL*RSLSNI
Trigger: GATGTTAGAGAGTGAGCGGCAGAGCAAGTCCAAGCC...CATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR GCA 90 bp TTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCACACCTCTGCCAGCCTaGGGCAGGCTTCCTCTAGCT +
Preference number: 4 (lower is better)
Translates to: FLQNISWLLRRPETGSLGTPLPA*GRLPLA
Trigger: AGCTAGAGGAAGCCTGCCGCAGGCTGGCAGAGGTGT...GCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGCCACTCGCAAAGTTTTaGTATCCTTCAGGTTCATCT +
Preference number: 4 (lower is better)
Translates to: CVGLRQGLWASAPWCTPRPLAKF*YPSGSS
Trigger: AGATGAACCTGAAGGATACCAAAACTTTGCGAGTGG...CCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp AATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCGTATGTAGGTCTTGGTaGCGGGCTTCAGCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: NISWLLRRPETGSLGFGSVCRSW*RASAAW
Trigger: CCAAGCAGCTGAAGCCCGCCACCAAGACCTACATAC...GGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp AATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCCTCGTATGTAGGTCTTaGTGGCGGGCTTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: NISWLLRRPETGSLGFGSLVCRS*WRASAA
Trigger: AGCAGCTGAAGCCCGCCACCAAGACCTACATACGAG...GGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGCTTCTTCATTCAAGGTaGGGAGGTAGCCACATAAGA +
Preference number: 4 (lower is better)
Translates to: CCVGLRQGLWASAPWCTPLLHSR*GGSHIR
Trigger: TCTTATGTGGCTACCTCCCCACCTTGAATGAAGAAG...CGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp ATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCAATCTCACACTCGCGGTaGCCCGAAGAGTTTTGCTGG +
Preference number: 4 (lower is better)
Translates to: IFRGCCVGLRQGLWASAPISHSR*PEEFCW
Trigger: CCAGCAAAACTCTTCGGGCCACCGCGAGTGTGAGAT...TGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTTGCAGCATCCTCCTGTATaGAATTTCTTCTCCACAGAA +
Preference number: 4 (lower is better)
Translates to: GLRQGLWASAPWCTPRCLQHPPV*NFFSTE
Trigger: TTCTGTGGAGAAGAAATTCCATACAGGAGGATGCTG...CAAGCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCTCTTTCTTATGCTTTaGGCACAAAACTGCTCCCCA +
Preference number: 4 (lower is better)
Translates to: GCCVGLRQGLWASAPWCTLFLML*AQNCSP
Trigger: TGGGGAGCAGTTTTGTGCCCAAAGCATAAGAAAGAG...CGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp TTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCCATCCTCGCGGAAGCTaGTGCTGGGATCTGGAAGGA +
Preference number: 4 (lower is better)
Translates to: FLQNISWLLRRPETGSLGHPRGS*CWDLEG
Trigger: TCCTTCCAGATCCCAGCAGCAGCTTCCGCGAGGATG...GCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp AGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCCTTTTTGCTGAGCTaGTCCTTGAAGTGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: RIFRGCCVGLRQGLWASAPFLLS*SLKWPR
Trigger: CCTGGGCCACTTCAAGGAGCAGCTCAGCAAAAAGGG...AGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCCGGGCTTCAGCTGCTTaGAGACAACGCTGTTGTTCT +
Preference number: 4 (lower is better)
Translates to: QNISWLLRRPETGSLGFGRASAA*RQRCCS
Trigger: AGAACAACAGCGTTGTCTCCAAGCAGCTGAAGCCCG...GCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTCCTCCATCACTGCCTaGATCTCGGTCTGTGCCTGG +
Preference number: 4 (lower is better)
Translates to: FLQNISWLLRRPETGSLGSSITA*ISVCAW
Trigger: CCAGGCACAGACCGAGATCCAGGCAGTGATGGAGGA...GCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp AATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCTTTCAGCTGTTTCCGTaGATCTCACACTCGCGGTGG +
Preference number: 4 (lower is better)
Translates to: NISWLLRRPETGSLGFGSFQLFP*ISHSRW
Trigger: CCACCGCGAGTGTGAGATCCACGGAAACAGCTGAAA...GGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGTTGGCGCTGGTGGCTaGTGCAAAGACATAGCCGGA +
Preference number: 4 (lower is better)
Translates to: LQNISWLLRRPETGSLGFVGAGG*CKDIAG
Trigger: TCCGGCTATGTCTTTGCACCAGCCACCAGCGCCAAC...GAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp AATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCGAGACACTTGGCCATTaGCCTTCACACTGCGATGCA +
Preference number: 4 (lower is better)
Translates to: NISWLLRRPETGSLGFGSETLGH*PSHCDA
Trigger: TGCATCGCAGTGTGAAGGCCAATGGCCAAGTGTCTC...GGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCGCTTCGTCGTCTGTTTaGTCAGGAAGCTCTTGCCTC +
Preference number: 4 (lower is better)
Translates to: QNISWLLRRPETGSLGFGASSSV*SGSSCL
Trigger: GAGGCAAGAGCTTCCTGACCAAACAGACGACGAAGC...GCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTCTCCTCCTTGGTCTTaGGGACAGCGTGGTGGTGGA +
Preference number: 4 (lower is better)
Translates to: FLQNISWLLRRPETGSLGSPPWS*GQRGGG
Trigger: TCCACCACCACGCTGTCCCCAAGACCAAGGAGGAGA...GCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp ATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCACTCTTTGTGATCTTCTaGAGCCAGGCTTGGGTTGGC +
Preference number: 4 (lower is better)
Translates to: IFRGCCVGLRQGLWASAPLFVIF*SQAWVG
Trigger: GCCAACCCAAGCCTGGCTCCAGAAGATCACAAAGAG...TGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp CAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTGGGTTCTCGGAAAATaGGGTAGAGACACTTGGCCA +
Preference number: 4 (lower is better)
Translates to: QNISWLLRRPETGSLGFGWVLGK*GRDTWP
Trigger: TGGCCAAGTGTCTCTACCTCATTTTCCGAGAACCCA...GCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp ATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCACACAGAAAAAGTAGGTaGCAACCAGCTCACTGGCCT +
Preference number: 4 (lower is better)
Translates to: IFRGCCVGLRQGLWASAPHRKSR*QPAHWP
Trigger: AGGCCAGTGAGCTGGTTGTCACCTACTTTTTCTGTG...TGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp AGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTGCCTTCACACTGCGATaGATCTCTCTCTGGAGCTGT +
Preference number: 4 (lower is better)
Translates to: RIFRGCCVGLRQGLWASAAFTLR*ISLWSC
Trigger: ACAGCTCCAGAGAGAGATGCATCGCAGTGTGAAGGC...AGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp GGCTTGGCTCCTAAGCGTGGACAGCAATCCAAACTTCTCACTCCCACTTCCAGGTATGGGGCTTGGACTTaGTCTGCCGCTCACTCTCTA +
Preference number: 4 (lower is better)
Translates to: GLAPKRGQQSKLLTPTSRYGAWT*SAAHSL
Trigger: TAGAGAGTGAGCGGCAGAGCAAGTCCAAGCCCCATA...CCTGGAAGTGGGAGTGAGAAGTTTGGATTGCTGTCCACGCTTAGGAGCCAAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR GCA 90 bp CTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGTAAGGGGAGGCATTaGAGGGTCCTGGGTAAATGG +
Preference number: 4 (lower is better)
Translates to: LQNISWLLRRPETGSLGFGKGRH*RVLGKW
Trigger: CCATTTACCCAGGACCCTGCAATGCCTCCCCTTACC...GAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCAAGACTTGGTCCACCTaGTCAAAGGGGAATCGGGGG +
Preference number: 4 (lower is better)
Translates to: FLQNISWLLRRPETGSLGKTWST*SKGNRG
Trigger: CCCCCGATTCCCCTTTGACCAGGTGGACCAAGTCTT...GCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTGTCGTTGGCGCTGGTaGCTGGTGCAAAGACATAGC +
Preference number: 4 (lower is better)
Translates to: FLQNISWLLRRPETGSLGCRWRW*LVQRHS
Trigger: GCTATGTCTTTGCACCAGCCACCAGCGCCAACGACA...GCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp AGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTTGTCCGTCATGGACATaGAATCGTCGGTCAGTGCGT +
Preference number: 4 (lower is better)
Translates to: RIFRGCCVGLRQGLWASACPSWT*NRRSVR
Trigger: ACGCACTGACCGACGATTCCATGTCCATGACGGACA...AGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCCTGGCCTGGAGCGCGTaGACACTTGCCAGTTTCTTT +
Preference number: 4 (lower is better)
Translates to: FLQNISWLLRRPETGSLGLAWSA*TLASFF
Trigger: AAAGAAACTGGCAAGTGTCCACGCGCTCCAGGCCAG...GCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCCGGGCTTCAGCTGCTTaGAGACAACGCTGTTGTTCT +
Preference number: 4 (lower is better)
Translates to: FLQNISWLLRRPETGSLGRASAA*RQRCCS
Trigger: AGAACAACAGCGTTGTCTCCAAGCAGCTGAAGCCCG...GCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCTGTCCGTCATGGACATaGAATCGTCGGTCAGTGCGT +
Preference number: 4 (lower is better)
Translates to: LQNISWLLRRPETGSLGFCPSWT*NRRSVR
Trigger: ACGCACTGACCGACGATTCCATGTCCATGACGGACA...GAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GGCTTGGCTCCTAAGCGTGGACAGCAATCCAAACTTCTCACTCCCACTTCCAGGCGATGCATCTCTCTCTaGAGCTGTTTCTTACTCCCC +
Preference number: 4 (lower is better)
Translates to: GLAPKRGQQSKLLTPTSRRCISL*SCFLLP
Trigger: GGGGAGTAAGAAACAGCTCCAGAGAGAGATGCATCG...CCTGGAAGTGGGAGTGAGAAGTTTGGATTGCTGTCCACGCTTAGGAGCCAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CCA 90 bp TTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCGGGCTCTGGAGCCTTTaGGTGGCTTTTGCATTTGGA +
Preference number: 4 (lower is better)
Translates to: FLQNISWLLRRPETGSLGGLWSL*VAFAFG
Trigger: TCCAAATGCAAAAGCCACCCAAAGGCTCCAGAGCCC...GCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp GCCTATAGTACAGGGAACGCTGGCAGACAGGACATACAGATTAACTTAACACAATTGCCCACACTAGGCTaGCACGGTGGGGTCTCCCCT +
Preference number: 4 (lower is better)
Translates to: AYSTGNAGRQDIQINLTQLPTLG*HGGVSP
Trigger: AGGGGAGACCCCACCGTGTCAGCCTAGTGTGGGCAA...TTGTGTTAAGTTAATCTGTATGTCCTGTCTGCCAGCGTTCCCTGTACTATAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR GCA 90 bp CTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGAGCGCGTGGACACTTaGCAGTTTCTTTGGCTCTTT +
Preference number: 4 (lower is better)
Translates to: LQNISWLLRRPETGSLGFERVDT*QFLWLF
Trigger: AAAGAGCCAAAGAAACTGGCAAGTGTCCACGCGCTC...GAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp ATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCACTTCTTCATTCAAGGTaGGGAGGTAGCCACATAAGA +
Preference number: 4 (lower is better)
Translates to: IFRGCCVGLRQGLWASAPLLHSR*GGSHIR
Trigger: TCTTATGTGGCTACCTCCCCACCTTGAATGAAGAAG...TGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp CAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCGTGATAAGGATTGACTaGGTCGCTTCTCTTGAAGGA +
Preference number: 4 (lower is better)
Translates to: QNISWLLRRPETGSLGFGVIRID*VASLEG
Trigger: TCCTTCAAGAGAAGCGACCCAGTCAATCCTTATCAC...GCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp TTTTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGTGCCAAAGTGTTGGGTaGGGTAAGGGGAGGCATTGC +
Preference number: 4 (lower is better)
Translates to: FSFRIFRGCCVGLRQGLWCQSVG*GKGRHC
Trigger: GCAATGCCTCCCCTTACCCCACCCAACACTTTGGCA...CCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp ATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCACCACTCGCAAAGTTTTaGTATCCTTCAGGTTCATCT +
Preference number: 4 (lower is better)
Translates to: IFRGCCVGLRQGLWASAPPLAKF*YPSGSS
Trigger: AGATGAACCTGAAGGATACCAAAACTTTGCGAGTGG...TGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp AGTCTCTCAAACACACTCAGCATCTTCTATAGCCCAGAGTGGTCATGTTTTGAACAGGCGTCATCTCCTTaGGCAGGCGGTGGGTTCTCG +
Preference number: 4 (lower is better)
Translates to: SLSNTLSIFYSPEWSCFEQASSP*AGGGFS
Trigger: CGAGAACCCACCGCCTGCCCAAGGAGATGACGCCTG...TTCAAAACATGACCACTCTGGGCTATAGAAGATGCTGAGTGTGTTTGAGAGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR GCA 90 bp TTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTCCTTCAGGTTCATCTaGCTGAACCCATTACAAGCA +
Preference number: 4 (lower is better)
Translates to: FLQNISWLLRRPETGSLGSFRFI*LNPLQA
Trigger: TGCTTGTAATGGGTTCAGGCAGATGAACCTGAAGGA...GCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR GCA 90 bp GCCTATAGTACAGGGAACGCTGGCAGACAGGACATACAGATTAACTTAACACAACGTGAGCTCAGGGCCTaGTCAGACCCCTCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: AYSTGNAGRQDIQINLTQRELRA*SDPSFS
Trigger: AGAAAAGGAGGGGTCTGAGCAGGCCCTGAGCTCACG...TTGTGTTAAGTTAATCTGTATGTCCTGTCTGCCAGCGTTCCCTGTACTATAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR GCA 90 bp TTTTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGAGCGCGTGGACACTTaGCAGTTTCTTTGGCTCTTT +
Preference number: 4 (lower is better)
Translates to: FSFRIFRGCCVGLRQGLWERVDT*QFLWLF
Trigger: AAAGAGCCAAAGAAACTGGCAAGTGTCCACGCGCTC...CCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR TCA 90 bp TTTTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGTTCTTTGGCTCTTTGTaGTCTTCTGGAGCCAGGCTT +
Preference number: 4 (lower is better)
Translates to: FSFRIFRGCCVGLRQGLWFFGSL*SSGARL
Trigger: AAGCCTGGCTCCAGAAGATCACAAAGAGCCAAAGAA...CCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp GCCTATAGTACAGGGAACGCTGGCAGACAGGACATACAGATTAACTTAACACAAATCTCACACTCGCGGTaGCCCGAAGAGTTTTGCTGG +
Preference number: 4 (lower is better)
Translates to: AYSTGNAGRQDIQINLTQISHSR*PEEFCW
Trigger: CCAGCAAAACTCTTCGGGCCACCGCGAGTGTGAGAT...TTGTGTTAAGTTAATCTGTATGTCCTGTCTGCCAGCGTTCCCTGTACTATAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR GCA 90 bp TTTTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGTCCTTCAGGTTCATCTaGCTGAACCCATTACAAGCA +
Preference number: 4 (lower is better)
Translates to: FSFRIFRGCCVGLRQGLWSFRFI*LNPLQA
Trigger: TGCTTGTAATGGGTTCAGGCAGATGAACCTGAAGGA...CCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CCA 90 bp AGTCTCTCAAACACACTCAGCATCTTCTATAGCCCAGAGTGGTCATGTTTTGAAGGGCTCTGGAGCCTTTaGGTGGCTTTTGCATTTGGA +
Preference number: 4 (lower is better)
Translates to: SLSNTLSIFYSPEWSCFEGLWSL*VAFAFG
Trigger: TCCAAATGCAAAAGCCACCCAAAGGCTCCAGAGCCC...TTCAAAACATGACCACTCTGGGCTATAGAAGATGCTGAGTGTGTTTGAGAGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR TCA 90 bp GCCTATAGTACAGGGAACGCTGGCAGACAGGACATACAGATTAACTTAACACAATTCTTTGGCTCTTTGTaGTCTTCTGGAGCCAGGCTT +
Preference number: 4 (lower is better)
Translates to: AYSTGNAGRQDIQINLTQFFGSL*SSGARL
Trigger: AAGCCTGGCTCCAGAAGATCACAAAGAGCCAAAGAA...TTGTGTTAAGTTAATCTGTATGTCCTGTCTGCCAGCGTTCCCTGTACTATAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CCA 90 bp TCACTTGGAGAAATGCCATGCAGAGCAGATTCCTCTGTTAACGAAGAAATGATTCTTTGCATTCCGTTTTaGCAAGGTACCACCTCTGCT +
Preference number: 4 (lower is better)
Translates to: SLGEMPCRADSSVNEEMILCIPF*QGTTSA
Trigger: AGCAGAGGTGGTACCTTGCCAAAACGGAATGCAAAG...AATCATTTCTTCGTTAACAGAGGAATCTGCTCTGCATGGCATTTCTCCAAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS GCA 90 bp GCCCGGGCCACCGAGCGGGAGTGTCCGCTGGCCCCCAACAGATGGTaGCGGCTGACTCGTTCTCCTGGGGCCGCACAGGCAGACTCCAAT +
Preference number: 5 (lower is better)
Translates to: ARATERECPLAPNRW*RLTRSPGAAQADSN
Trigger: ATTGGAGTCTGCCTGTGCGGCCCCAGGAGAACGAGTCAGCCGGCACCATCTGTTGGGGGCCAGCGGACACTCCCGCTCGGTGGCCCGGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGACAGGCGTCATCTCCTaGGGCAGGCGGTGGGTTCTC +
Preference number: 5 (lower is better)
Translates to: LHGARRGACPGCTPRRPRTGVIS*GRRWVL
Trigger: GAGAACCCACCGCCTGCCCAAGGAGATGACGCCTGT...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp AGAGCTGGAGCCCTCAATATAGGGCGGCGCACGGACGGAGCGGGTCCCCGTGCCAGCTGTGCCAAAGTGTaGGGTGGGGTAAGGGGAGGC +
Preference number: 5 (lower is better)
Translates to: RAGALNIGRRTDGAGPRASCAKV*GGVRGG
Trigger: GCCTCCCCTTACCCCACCCAACACTTTGGCACAGCT...GGCACGGGGACCCGCTCCGTCCGTGCGCCGCCCTATATTGAGGGCTCCAGCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CAA 90 bp TGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGACAGGCGTCATCTCCTaGGGCAGGCGGTGGGTTCTC +
Preference number: 5 (lower is better)
Translates to: CVGLRQGLWASAPWCTPRTGVIS*GRRWVL
Trigger: GAGAACCCACCGCCTGCCCAAGGAGATGACGCCTGT...CCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp GGGAGAGCTGGAGCCCTCAATATAGGGCGGCGCACGGACGGAGCGGGTCCCCGTGGGGCTCTGGAGCCTTaGGGTGGCTTTTGCATTTGG +
Preference number: 5 (lower is better)
Translates to: GRAGALNIGRRTDGAGPRGALEP*GGFCIW
Trigger: CCAAATGCAAAAGCCACCCAAAGGCTCCAGAGCCCC...ACGGGGACCCGCTCCGTCCGTGCGCCGCCCTATATTGAGGGCTCCAGCTCTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS CCA 90 bp CATAGGTTTGGTGGACTGGACCTTGCCCACACTAGGCTGACACGGTaGGGTCTCCCCTTCTTCTCCCGGAACCGGGGGCCGCGGAGCATC +
Preference number: 5 (lower is better)
Translates to: HRFGGLDLAHTRLTR*GLPFFSRNRGPRSI
Trigger: GATGCTCCGCGGCCCCCGGTTCCGGGAGAAGAAGGGGAGACCCCACCGTGTCAGCCTAGTGTGGGCAAGGTCCAGTCCACCAAACCTATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
ENSMUST00000140821.2
ENSMUST00000144511.2
ENSMUST00000152909.2
CDS-3UTR CAA 90 bp TGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGCTTCTGGAGCCAGGCTaGGGTTGGCGAAGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: CCVGLRQGLWASAPWCTPLLEPG*GWRRVR
Trigger: CCTCACCCTTCGCCAACCCAAGCCTGGCTCCAGAAG...CGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 90 bp CTTCTTCTCCCGGAACCGGGGGCCGCGGAGCATCCTCGCGGAAGCTaGTGCTGGGATCTGGAAGGAGAGTCACTAACACGGCGCTACTCA +
Preference number: 5 (lower is better)
Translates to: LLLPEPGAAEHPRGS*CWDLEGESLTRRYS
Trigger: TGAGTAGCGCCGTGTTAGTGACTCTCCTTCCAGATCCCAGCAGCAGCTTCCGCGAGGATGCTCCGCGGCCCCCGGTTCCGGGAGAAGAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
ENSMUST00000140821.2
ENSMUST00000144511.2
ENSMUST00000152909.2
CDS-3UTR CAA 90 bp GGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTTGGCGGGCTTCAGCTGCTaGGAGACAACGCTGTTGTTC +
Preference number: 5 (lower is better)
Translates to: GLRQGLWASAPWCTPRCLAGFSC*ETTLLF
Trigger: GAACAACAGCGTTGTCTCCAAGCAGCTGAAGCCCGC...CAAGCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp GTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCGTGGCCCGAAGAGTTTaGCTGGACAAGCCAACCACG +
Preference number: 5 (lower is better)
Translates to: VGLRQGLWASAPWCTPRCVARRV*LDKPTT
Trigger: CGTGGTTGGCTTGTCCAGCAAAACTCTTCGGGCCAC...GCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp TGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTTGGTCAGGAAGCTCTaGCCTCCAAGGAGGGGGCAA +
Preference number: 5 (lower is better)
Translates to: CVGLRQGLWASAPWCTPRLVRKL*PPRRGQ
Trigger: TTGCCCCCTCCTTGGAGGCAAGAGCTTCCTGACCAA...CCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp GGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGATCTCCTCCTTGGTCTaGGGGACAGCGTGGTGGTGG +
Preference number: 5 (lower is better)
Translates to: GCCVGLRQGLWASAPWCTISSLV*GTAWWW
Trigger: CCACCACCACGCTGTCCCCAAGACCAAGGAGGAGAT...CGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp GGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTTGGGGGCTCTGGAGCCTTaGGGTGGCTTTTGCATTTGG +
Preference number: 5 (lower is better)
Translates to: GLRQGLWASAPWCTPRCLGALEP*GGFCIW
Trigger: CCAAATGCAAAAGCCACCCAAAGGCTCCAGAGCCCC...CAAGCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp TGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGGCCCAGGGTCAAGCTTaGAGCCTTCAGCATCCTCCT +
Preference number: 5 (lower is better)
Translates to: CVGLRQGLWASAPWCTPRAQGQA*SLQHPP
Trigger: AGGAGGATGCTGAAGGCTCAAAGCTTGACCCTGGGC...CCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp AGCCTTTGGCTCCAGGGTGAAGTCTCCCCCACTCCCCCACTCTGGATGGTCCCCACGGTGGGTGAGAGTTaGCACTTGAGGTCGGCACAC +
Preference number: 5 (lower is better)
Translates to: SLWLQGEVSPTPPLWMVPTVGES*HLRSAH
Trigger: GTGTGCCGACCTCAAGTGCAAACTCTCACCCACCGT...GGGGACCATCCAGAGTGGGGGAGTGGGGGAGACTTCACCCTGGAGCCAAAGGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CAA 90 bp GGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTTGAGAGACACTTGGCCATaGGCCTTCACACTGCGATGC +
Preference number: 5 (lower is better)
Translates to: GLRQGLWASAPWCTPRCLRDTWP*AFTLRC
Trigger: GCATCGCAGTGTGAAGGCCAATGGCCAAGTGTCTCT...CAAGCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp TGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGTTGGTCAGGAAGCTCTaGCCTCCAAGGAGGGGGCAA +
Preference number: 5 (lower is better)
Translates to: CCVGLRQGLWASAPWCTPLVRKL*PPRRGQ
Trigger: TTGCCCCCTCCTTGGAGGCAAGAGCTTCCTGACCAA...CGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp GGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCTATGGGGCTTGGACTaGCTCTGCCGCTCACTCTCT +
Preference number: 5 (lower is better)
Translates to: GCCVGLRQGLWASAPWCTLWGLD*LCRSLS
Trigger: AGAGAGTGAGCGGCAGAGCAAGTCCAAGCCCCATAG...CGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CAA 90 bp GGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGGCCCAGGGTCAAGCTTaGAGCCTTCAGCATCCTCCT +
Preference number: 5 (lower is better)
Translates to: GCCVGLRQGLWASAPWCTAQGQA*SLQHPP
Trigger: AGGAGGATGCTGAAGGCTCAAAGCTTGACCCTGGGC...CGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 90 bp TGGAGAGGTGGTCGTCCAAAATGGTTTGTGGGTCCTCTTCATAGCTaGCGGAGGGTAGGAGGGCCAGGGGGTGCTGGACCGGTGCTCCAT +
Preference number: 5 (lower is better)
Translates to: WRGGRPKWFVGPLHS*RRVGGPGGAGPVLH
Trigger: ATGGAGCACCGGTCCAGCACCCCCTGGCCCTCCTACCCTCCGGCAGCTATGAAGAGGACCCACAAACCATTTTGGACGACCACCTCTCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 90 bp GTGTCCGCTGGCCCCCAACAGATGGTGCCGGCTGACTCGTTCTCCTaGGGCCGCACAGGCAGACTCCAATGGGTAGCTCTTTCTTATGCT +
Preference number: 5 (lower is better)
Translates to: VSAGPQQMVPADSFS*GRTGRLQWVALSYA
Trigger: AGCATAAGAAAGAGCTACCCATTGGAGTCTGCCTGTGCGGCCCCAGGAGAACGAGTCAGCCGGCACCATCTGTTGGGGGCCAGCGGACAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp AGCCTTTGGCTCCAGGGTGAAGTCTCCCCCACTCCCCCACTCTGGATGGTCCCCGACCGAGCCGATCTGTaGCTTCTTGATGCCATCTCG +
Preference number: 5 (lower is better)
Translates to: SLWLQGEVSPTPPLWMVPDRADL*LLDAIS
Trigger: CGAGATGGCATCAAGAAGCAACAGATCGGCTCGGTC...GGGGACCATCCAGAGTGGGGGAGTGGGGGAGACTTCACCCTGGAGCCAAAGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CAA 90 bp GGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGGACCGAGCCGATCTGTaGCTTCTTGATGCCATCTCG +
Preference number: 5 (lower is better)
Translates to: GCCVGLRQGLWASAPWCTDRADL*LLDAIS
Trigger: CGAGATGGCATCAAGAAGCAACAGATCGGCTCGGTC...CGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 90 bp TGGACATCCCTCCATCCCTGGCCGACAGTGCAAGACCCGGTTCGGTaGCCTTTGCATTCCGTTTTGGCAAGGTACCACCTCTGCTGCCAC +
Preference number: 5 (lower is better)
Translates to: WTSLHPWPTVQDPVR*PLHSVLARYHLCCH
Trigger: GTGGCAGCAGAGGTGGTACCTTGCCAAAACGGAATGCAAAGGGCACCGAACCGGGTCTTGCACTGTCGGCCAGGGATGGAGGGATGTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS TCA 90 bp CGCGGTGGCCCGAAGAGTTTTGCTGGACAAGCCAACCACGGTGGGTaGGAGTTTGCACTTGAGGTCGGCACACGTCCACTCCTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: RGGPKSFAGQANHGG*EFALEVGTRPLLFF
Trigger: GAAGAAGAGGAGTGGACGTGTGCCGACCTCAAGTGCAAACTCTCACCCACCGTGGTTGGCTTGTCCAGCAAAACTCTTCGGGCCACCGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 90 bp CCCTCCATCCCTGGCCGACAGTGCAAGACCCGGTTCGGTGCCCTTTaGATTCCGTTTTGGCAAGGTACCACCTCTGCTGCCACAAAACTG +
Preference number: 5 (lower is better)
Translates to: PSIPGRQCKTRFGAL*IPFWQGTTSAATKL
Trigger: CAGTTTTGTGGCAGCAGAGGTGGTACCTTGCCAAAACGGAATGCAAAGGGCACCGAACCGGGTCTTGCACTGTCGGCCAGGGATGGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS CCA 90 bp AGAGGCAGCGGACTCTCTGTGTGGCTTCTGCCTCGATCTCCTCCTTaGTCTTGGGGACAGCGTGGTGGTGGATGTAGTGGTGGTGAACGT +
Preference number: 5 (lower is better)
Translates to: RGSGLSVWLLPRSPP*SWGQRGGGCSGGER
Trigger: ACGTTCACCACCACTACATCCACCACCACGCTGTCCCCAAGACCAAGGAGGAGATCGAGGCAGAAGCCACACAGAGAGTCCGCTGCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp CTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGGTGTACCTCTTATAGATaGCTTTGGCCACTCGCAAAG +
Preference number: 5 (lower is better)
Translates to: LHGARRGACPGCTPRRPRCTSYR*LWPLAK
Trigger: CTTTGCGAGTGGCCAAAGCAATCTATAAGAGGTACA...CCTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp GCTCCATGGTGCACGCCGAGGTGCTTGCCCAGGTTGCACGCCGAGGAGGCCAAGCACTTGCCAGTTTCTTaGGCTCTTTGTGATCTTCTG +
Preference number: 5 (lower is better)
Translates to: APWCTPRCLPRLHAEEAKHLPVS*ALCDLL
Trigger: CAGAAGATCACAAAGAGCCAAAGAAACTGGCAAGTG...CTTGGCCTCCTCGGCGTGCAACCTGGGCAAGCACCTCGGCGTGCACCATGGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 90 bp CTATGGGGCTTGGACTTGCTCTGCCGCTCACTCTCTAACATCCACTaGCAGACATCCTGTGACCGGTCTCCTTCTTCCCCAGGAAGCTGG +
Preference number: 5 (lower is better)
Translates to: LWGLDLLCRSLSNIH*QTSCDRSPSSPGSW
Trigger: CCAGCTTCCTGGGGAAGAAGGAGACCGGTCACAGGATGTCTGGCAGTGGATGTTAGAGAGTGAGCGGCAGAGCAAGTCCAAGCCCCATAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS CCA 90 bp GTGCCGGCTGACTCGTTCTCCTGGGGCCGCACAGGCAGACTCCAATaGGTAGCTCTTTCTTATGCTTTGGGCACTATGGGGCTTGGACTT +
Preference number: 5 (lower is better)
Translates to: VPADSFSWGRTGRLQ*VALSYALGTMGLGL
Trigger: AAGTCCAAGCCCCATAGTGCCCAAAGCATAAGAAAGAGCTACCCATTGGAGTCTGCCTGTGCGGCCCCAGGAGAACGAGTCAGCCGGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CAA 90 bp AGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTAGCTGTGCCAAAGTGTaGGGTGGGGTAAGGGGAGGC +
Preference number: 5 (lower is better)
Translates to: RIFRGCCVGLRQGLWASASCAKV*GGVRGG
Trigger: GCCTCCCCTTACCCCACCCAACACTTTGGCACAGCT...AGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp TTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCCTTCTGGAGCCAGGCTaGGGTTGGCGAAGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: FLQNISWLLRRPETGSLGLLEPG*GWRRVR
Trigger: CCTCACCCTTCGCCAACCCAAGCCTGGCTCCAGAAG...GCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp GTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCCACTTGCCAGTTTCTTaGGCTCTTTGTGATCTTCTG +
Preference number: 5 (lower is better)
Translates to: VGLRQGLWASAPWCTPRCHLPVS*ALCDLL
Trigger: CAGAAGATCACAAAGAGCCAAAGAAACTGGCAAGTG...GCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp ATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATCGATCCTCTCCACTTaGCCCAGGATCCTGCCTTCG +
Preference number: 5 (lower is better)
Translates to: IFRGCCVGLRQGLWASAPSILST*PRILPS
Trigger: CGAAGGCAGGATCCTGGGCAAAGTGGAGAGGATCGA...TGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 90 bp TGCGGTAAGGAGGGACTCCATCTACGCTACTGTCCGTCATGGACATaGAATCGTCGGTCAGTGCGTCGCTGGATAACTCGCTGTCGTTGG +
Preference number: 5 (lower is better)
Translates to: CGKEGLHLRYCPSWT*NRRSVRRWITRCRW
Trigger: CCAACGACAGCGAGTTATCCAGCGACGCACTGACCGACGATTCCATGTCCATGACGGACAGTAGCGTAGATGGAGTCCCTCCTTACCGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 90 bp TCCCCATGCGGTAAGGAGGGACTCCATCTACGCTACTGTCCGTCATaGACATGGAATCGTCGGTCAGTGCGTCGCTGGATAACTCGCTGT +
Preference number: 5 (lower is better)
Translates to: SPCGKEGLHLRYCPS*TWNRRSVRRWITRC
Trigger: ACAGCGAGTTATCCAGCGACGCACTGACCGACGATTCCATGTCCATGACGGACAGTAGCGTAGATGGAGTCCCTCCTTACCGCATGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp TGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTTGGAGACAACGCTGTaGTTCTCAATGTACCTCTTA +
Preference number: 5 (lower is better)
Translates to: CVGLRQGLWASAPWCTPRLETTL*FSMYLL
Trigger: TAAGAGGTACATTGAGAACAACAGCGTTGTCTCCAA...CCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp GTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGTGCACGCCGAGGTGCTTGGAGACAACGCTGTaGTTCTCAATGTACCTCTTA +
Preference number: 5 (lower is better)
Translates to: VGLRQGLWASAPWCTPRCLETTL*FSMYLL
Trigger: TAAGAGGTACATTGAGAACAACAGCGTTGTCTCCAA...GCACCTCGGCGTGCACCATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp AGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTGCGGGCTTCAGCTGCTaGGAGACAACGCTGTTGTTC +
Preference number: 5 (lower is better)
Translates to: RIFRGCCVGLRQGLWASAAGFSC*ETTLLF
Trigger: GAACAACAGCGTTGTCTCCAAGCAGCTGAAGCCCGC...AGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp GGCTTGGCTCCTAAGCGTGGACAGCAATCCAAACTTCTCACTCCCACTTCCAGGGTGGCCCGAAGAGTTTaGCTGGACAAGCCAACCACG +
Preference number: 5 (lower is better)
Translates to: GLAPKRGQQSKLLTPTSRVARRV*LDKPTT
Trigger: CGTGGTTGGCTTGTCCAGCAAAACTCTTCGGGCCAC...CCTGGAAGTGGGAGTGAGAAGTTTGGATTGCTGTCCACGCTTAGGAGCCAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS CCA 90 bp TTTTCTTCATCCTCCCGGATCTGCTGCAGCCGCTCCTCCAGACTATaGCGGCTTTCCAGCTCCAGTTTCAGTTTCTCCAGCCTGGAGATG +
Preference number: 5 (lower is better)
Translates to: FSSSSRICCSRSSRL*RLSSSSFSFSSLEM
Trigger: CATCTCCAGGCTGGAGAAACTGAAACTGGAGCTGGAAAGCCGCCATAGTCTGGAGGAGCGGCTGCAGCAGATCCGGGAGGATGAAGAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 90 bp AATAATAATCTGTTCCCCCAGGACAGAGGCAGCGGACTCTCTGTGTaGCTTCTGCCTCGATCTCCTCCTTGGTCTTGGGGACAGCGTGGT +
Preference number: 5 (lower is better)
Translates to: NNNLFPQDRGSGLSV*LLPRSPPWSWGQRG
Trigger: ACCACGCTGTCCCCAAGACCAAGGAGGAGATCGAGGCAGAAGCCACACAGAGAGTCCGCTGCCTCTGTCCTGGGGGAACAGATTATTATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp CTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCACGGTGGGTGAGAGTTaGCACTTGAGGTCGGCACAC +
Preference number: 5 (lower is better)
Translates to: LQNISWLLRRPETGSLGFTVGES*HLRSAH
Trigger: GTGTGCCGACCTCAAGTGCAAACTCTCACCCACCGT...GAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp GGCTTGGCTCCTAAGCGTGGACAGCAATCCAAACTTCTCACTCCCACTTCCAGGAGAGACACTTGGCCATaGGCCTTCACACTGCGATGC +
Preference number: 5 (lower is better)
Translates to: GLAPKRGQQSKLLTPTSRRDTWP*AFTLRC
Trigger: GCATCGCAGTGTGAAGGCCAATGGCCAAGTGTCTCT...CCTGGAAGTGGGAGTGAGAAGTTTGGATTGCTGTCCACGCTTAGGAGCCAAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CAA 90 bp CAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTGCTTCGTCGTCTGTTaGGTCAGGAAGCTCTTGCCT +
Preference number: 5 (lower is better)
Translates to: QNISWLLRRPETGSLGFGCFVVC*VRKLLP
Trigger: AGGCAAGAGCTTCCTGACCAAACAGACGACGAAGCA...GCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp TTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTCGATCCTCTCCACTTaGCCCAGGATCCTGCCTTCG +
Preference number: 5 (lower is better)
Translates to: FLQNISWLLRRPETGSLGSILST*PRILPS
Trigger: CGAAGGCAGGATCCTGGGCAAAGTGGAGAGGATCGA...GCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS TCA 90 bp GAGTTTTGCTGGACAAGCCAACCACGGTGGGTGAGAGTTTGCACTTaGGGTCGGCACACGTCCACTCCTCTTCTTCATTCAAGGTGGGGA +
Preference number: 5 (lower is better)
Translates to: EFCWTSQPRWVRVCT*GRHTSTPLLHSRWG
Trigger: TCCCCACCTTGAATGAAGAAGAGGAGTGGACGTGTGCCGACCTCAAGTGCAAACTCTCACCCACCGTGGTTGGCTTGTCCAGCAAAACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp ATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTTCGGCTCCATGGCCACTCGCAAAGTTTaGGTATCCTTCAGGTTCATC +
Preference number: 5 (lower is better)
Translates to: ISWLLRRPETGSLGFGSMATRKV*VSFRFI
Trigger: GATGAACCTGAAGGATACCAAAACTTTGCGAGTGGC...CATGGAGCCGAAGCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp TTTTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGTGGGCACTATGGGGCTaGGACTTGCTCTGCCGCTCA +
Preference number: 5 (lower is better)
Translates to: FSFRIFRGCCVGLRQGLWWALWG*DLLCRS
Trigger: TGAGCGGCAGAGCAAGTCCAAGCCCCATAGTGCCCA...CCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CAA 90 bp TTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGCTGCTTCGTCGTCTGTTaGGTCAGGAAGCTCTTGCCT +
Preference number: 5 (lower is better)
Translates to: FLQNISWLLRRPETGSLGCFVVC*VRKLLP
Trigger: AGGCAAGAGCTTCCTGACCAAACAGACGACGAAGCA...GCCCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 90 bp ATGGGTAGCTCTTTCTTATGCTTTGGGCACTATGGGGCTTGGACTTaGTCTGCCGCTCACTCTCTAACATCCACTGCCAGACATCCTGTG +
Preference number: 5 (lower is better)
Translates to: MGSSFLCFGHYGAWT*SAAHSLTSTARHPV
Trigger: CACAGGATGTCTGGCAGTGGATGTTAGAGAGTGAGCGGCAGAGCAAGTCCAAGCCCCATAGTGCCCAAAGCATAAGAAAGAGCTACCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS-3UTR CAA 90 bp TTTTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGGGAGCGCGTGGACACTaGCCAGTTTCTTTGGCTCTT +
Preference number: 5 (lower is better)
Translates to: FSFRIFRGCCVGLRQGLWGARGH*PVSLAL
Trigger: AAGAGCCAAAGAAACTGGCAAGTGTCCACGCGCTCC...CCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS TCA 90 bp TCAGCATCCTCCTGTATGGAATTTCTTCTCCACAGAAAAAGTAGGTaGCAACCAGCTCACTGGCCTGGAGCGCGTGGACACTTGCCAGTT +
Preference number: 5 (lower is better)
Translates to: SASSCMEFLLHRKSR*QPAHWPGARGHLPV
Trigger: AACTGGCAAGTGTCCACGCGCTCCAGGCCAGTGAGCTGGTTGTCACCTACTTTTTCTGTGGAGAAGAAATTCCATACAGGAGGATGCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 90 bp TTCTCGGAAAATGAGGTAGAGACACTTGGCCATTGGCCTTCACACTaGGATGCATCTCTCTCTGGAGCTGTTTCTTACTCCCCATGCGGT +
Preference number: 5 (lower is better)
Translates to: FSENEVETLGHWPSH*DASLSGAVSYSPCG
Trigger: ACCGCATGGGGAGTAAGAAACAGCTCCAGAGAGAGATGCATCGCAGTGTGAAGGCCAATGGCCAAGTGTCTCTACCTCATTTTCCGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp GCCTATAGTACAGGGAACGCTGGCAGACAGGACATACAGATTAACTTAACACAAATCTCCTCCTTGGTCTaGGGGACAGCGTGGTGGTGG +
Preference number: 5 (lower is better)
Translates to: AYSTGNAGRQDIQINLTQISSLV*GTAWWW
Trigger: CCACCACCACGCTGTCCCCAAGACCAAGGAGGAGAT...TTGTGTTAAGTTAATCTGTATGTCCTGTCTGCCAGCGTTCCCTGTACTATAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS GCA 90 bp GTACATGGGGAGCACTGTCTCGTCGTCCCAGATCTCCTCAAAAACTaGTCCGCAGGCAAATTCGTCACTCGCCTTCTTGAAATAATACCT +
Preference number: 5 (lower is better)
Translates to: VHGEHCLVVPDLLKN*SAGKFVTRLLEIIP
Trigger: AGGTATTATTTCAAGAAGGCGAGTGACGAATTTGCCTGCGGAGCAGTTTTTGAGGAGATCTGGGACGACGAGACAGTGCTCCCCATGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 90 bp GGCTGGTGCAAAGACATAGCCGGAACCTACGTGATAAGGATTGACTaGGTCGCTTCTCTTGAAGGACCTGAATCCGTTTTCAGCTGTTTC +
Preference number: 5 (lower is better)
Translates to: GWCKDIAGTYVIRID*VASLEGPESVFSCF
Trigger: GAAACAGCTGAAAACGGATTCAGGTCCTTCAAGAGAAGCGACCCAGTCAATCCTTATCACGTAGGTTCCGGCTATGTCTTTGCACCAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp TTTTCCTTCAGAATATTTCGTGGCTGTTGCGTAGGCCTGAGACAGGGTCTCTGGAAGGAGTGTAAAGACTaGGTCCACCTGGTCAAAGGG +
Preference number: 5 (lower is better)
Translates to: FSFRIFRGCCVGLRQGLWKECKD*VHLVKG
Trigger: CCCTTTGACCAGGTGGACCAAGTCTTTACACTCCTT...CCAGAGACCCTGTCTCAGGCCTACGCAACAGCCACGAAATATTCTGAAGGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 90 bp GAAGTGGCCCAGGGTCAAGCTTTGAGCCTTCAGCATCCTCCTGTATaGAATTTCTTCTCCACAGAAAAAGTAGGTGACAACCAGCTCACT +
Preference number: 5 (lower is better)
Translates to: EVAQGQALSLQHPPV*NFFSTEKVGDNQLT
Trigger: AGTGAGCTGGTTGTCACCTACTTTTTCTGTGGAGAAGAAATTCCATACAGGAGGATGCTGAAGGCTCAAAGCTTGACCCTGGGCCACTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp TTATACATAAACCCCTTTCAAAAACCAAGGGAGAGCTGGAGCCCTCAATATAGGGGAGCGCGTGGACACTaGCCAGTTTCTTTGGCTCTT +
Preference number: 5 (lower is better)
Translates to: LYINPFQKPRESWSPQYRGARGH*PVSLAL
Trigger: AAGAGCCAAAGAAACTGGCAAGTGTCCACGCGCTCC...CCTATATTGAGGGCTCCAGCTCTCCCTTGGTTTTTGAAAGGGGTTTATGTATAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS TCA 90 bp CTTTGGCCACTCGCAAAGTTTTGGTATCCTTCAGGTTCATCTGCCTaGACCCATTACAAGCAAACCAGAAGTCCAGCGTATCCACACATT +
Preference number: 5 (lower is better)
Translates to: LWPLAKFWYPSGSSA*THYKQTRSPAYPHI
Trigger: AATGTGTGGATACGCTGGACTTCTGGTTTGCTTGTAATGGGTTCAGGCAGATGAACCTGAAGGATACCAAAACTTTGCGAGTGGCCAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp TTATGTATGTCAGTCTCTCAAACACACTCAGCATCTTCTATAGCCCAGAGTGGTAAGGAGTGTAAAGACTaGGTCCACCTGGTCAAAGGG +
Preference number: 5 (lower is better)
Translates to: LCMSVSQTHSASSIAQSGKECKD*VHLVKG
Trigger: CCCTTTGACCAGGTGGACCAAGTCTTTACACTCCTT...ACCACTCTGGGCTATAGAAGATGCTGAGTGTGTTTGAGAGACTGACATACATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS GCA 90 bp CTGCTTGGAGACAACGCTGTTGTTCTCAATGTACCTCTTATAGATTaGTTTGGCCACTCGCAAAGTTTTGGTATCCTTCAGGTTCATCTG +
Preference number: 5 (lower is better)
Translates to: LLGDNAVVLNVPLID*FGHSQSFGILQVHL
Trigger: CAGATGAACCTGAAGGATACCAAAACTTTGCGAGTGGCCAAAGCAATCTATAAGAGGTACATTGAGAACAACAGCGTTGTCTCCAAGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS-3UTR CAA 90 bp AGTCTCTCAAACACACTCAGCATCTTCTATAGCCCAGAGTGGTCATGTTTTGAAGCCACTCGCAAAGTTTaGGTATCCTTCAGGTTCATC +
Preference number: 5 (lower is better)
Translates to: SLSNTLSIFYSPEWSCFEATRKV*VSFRFI
Trigger: GATGAACCTGAAGGATACCAAAACTTTGCGAGTGGC...TTCAAAACATGACCACTCTGGGCTATAGAAGATGCTGAGTGTGTTTGAGAGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS TCA 72 bp GTAAGGGGAGGCATTGCAGGGTCCTGGGTAAATGGGTaGGCCCGGGCCACCGAGCGGGAGTGTCCGCTGGCC +
Preference number: 6 (lower is better)
Translates to: VRGGIAGSWVNG*ARATERECPLA
Trigger: GGCCAGCGGACACTCCCGCTCGGTGGCCCGGGCTCACCCATTTACCCAGGACCCTGCAATGCCTCCCCTTAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 72 bp GGTGGACTGGACCTTGCCCACACTAGGCTGACACGGTaGGGTCTCCCCTTCTTCTCCCGGAACCGGGGGCCG +
Preference number: 6 (lower is better)
Translates to: GGLDLAHTRLTR*GLPFFSRNRGP
Trigger: CGGCCCCCGGTTCCGGGAGAAGAAGGGGAGACCCCACCGTGTCAGCCTAGTGTGGGCAAGGTCCAGTCCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
ENSMUST00000140821.2
ENSMUST00000144511.2
ENSMUST00000152909.2
CDS GCA 72 bp GAACCGGGGGCCGCGGAGCATCCTCGCGGAAGCTGCTaGTGGGATCTGGAAGGAGAGTCACTAACACGGCGC +
Preference number: 6 (lower is better)
Translates to: EPGAAEHPRGSC*WDLEGESLTRR
Trigger: GCGCCGTGTTAGTGACTCTCCTTCCAGATCCCAGCAGCAGCTTCCGCGAGGATGCTCCGCGGCCCCCGGTTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
ENSMUST00000140821.2
ENSMUST00000144511.2
ENSMUST00000152909.2
CDS CCA 72 bp GGCCCCCAACAGATGGTGCCGGCTGACTCGTTCTCCTaGGGCCGCACAGGCAGACTCCAATGGGTAGCTCTT +
Preference number: 6 (lower is better)
Translates to: GPQQMVPADSFS*GRTGRLQWVAL
Trigger: AAGAGCTACCCATTGGAGTCTGCCTGTGCGGCCCCAGGAGAACGAGTCAGCCGGCACCATCTGTTGGGGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 72 bp TGCTGGACCGGTGCTCCATCCCGTGAGCTCAGGGCCTaGTCAGACCCCTCCTTTTCTTCATCCTCCCGGATC +
Preference number: 6 (lower is better)
Translates to: CWTGAPSRELRA*SDPSFSSSSRI
Trigger: GATCCGGGAGGATGAAGAAAAGGAGGGGTCTGAGCAGGCCCTGAGCTCACGGGATGGAGCACCGGTCCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 72 bp GGTCGTCCAAAATGGTTTGTGGGTCCTCTTCATAGCTaGCGGAGGGTAGGAGGGCCAGGGGGTGCTGGACCG +
Preference number: 6 (lower is better)
Translates to: GRPKWFVGPLHS*RRVGGPGGAGP
Trigger: CGGTCCAGCACCCCCTGGCCCTCCTACCCTCCGGCAGCTATGAAGAGGACCCACAAACCATTTTGGACGACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CAA 90 bp ACCTCTGCCAGCCTGCGGCAGGCTTCCTCTAGCTGTGCCAAAGTGTaGGGTGGGGTAAGGGGAGGCATTGCAGGGTCCTGGGTAAATGGG +
Preference number: 6 (lower is better)
Translates to: TSASLRQASSSCAKV*GGVRGGIAGSWVNG
Trigger: CCCATTTACCCAGGACCCTGCAATGCCTCCCCTTACCCCACCCAACACTTTGGCACAGCTAGAGGAAGCCTGCCGCAGGCTGGCAGAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 72 bp CCTGGCCGACAGTGCAAGACCCGGTTCGGTGCCCTTTaGATTCCGTTTTGGCAAGGTACCACCTCTGCTGCC +
Preference number: 6 (lower is better)
Translates to: PGRQCKTRFGAL*IPFWQGTTSAA
Trigger: GGCAGCAGAGGTGGTACCTTGCCAAAACGGAATGCAAAGGGCACCGAACCGGGTCTTGCACTGTCGGCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS CCA 72 bp CGGCGAAGGCAGCAGGTTCCACAGGCGTCATCTCCTTaGGCAGGCGGTGGGTTCTCGGAAAATGAGGTAGAG +
Preference number: 6 (lower is better)
Translates to: RRRQQVPQASSP*AGGGFSENEVE
Trigger: CTCTACCTCATTTTCCGAGAACCCACCGCCTGCCCAAGGAGATGACGCCTGTGGAACCTGCTGCCTTCGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 72 bp CTGTTCCCCCAGGACAGAGGCAGCGGACTCTCTGTGTaGCTTCTGCCTCGATCTCCTCCTTGGTCTTGGGGA +
Preference number: 6 (lower is better)
Translates to: LFPQDRGSGLSV*LLPRSPPWSWG
Trigger: TCCCCAAGACCAAGGAGGAGATCGAGGCAGAAGCCACACAGAGAGTCCGCTGCCTCTGTCCTGGGGGAACAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 72 bp TTGGCTCTTTGTGATCTTCTGGAGCCAGGCTTGGGTTaGCGAAGGGTGAGGCTCCTGCCTGACCAGCAGCCG +
Preference number: 6 (lower is better)
Translates to: LALCDLLEPGLG*RRVRLLPDQQP
Trigger: CGGCTGCTGGTCAGGCAGGAGCCTCACCCTTCGCCAACCCAAGCCTGGCTCCAGAAGATCACAAAGAGCCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS TCA 72 bp ATAGGTTTGGTGGACTGGACCTTGCCCACACTAGGCTaGCACGGTGGGGTCTCCCCTTCTTCTCCCGGAACC +
Preference number: 6 (lower is better)
Translates to: IGLVDWTLPTLG*HGGVSPSSPGT
Trigger: GGTTCCGGGAGAAGAAGGGGAGACCCCACCGTGTCAGCCTAGTGTGGGCAAGGTCCAGTCCACCAAACCTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
ENSMUST00000140821.2
ENSMUST00000144511.2
ENSMUST00000152909.2
CDS TCA 72 bp TTTCCAGCTCCAGTTTCAGTTTCTCCAGCCTGGAGATaGGCTCGGCGGCGAAGGCAGCAGGTTCCACAGGCG +
Preference number: 6 (lower is better)
Translates to: FPAPVSVSPAWR*ARRRRQQVPQA
Trigger: CGCCTGTGGAACCTGCTGCCTTCGCCGCCGAGCTCATCTCCAGGCTGGAGAAACTGAAACTGGAGCTGGAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CAA 90 bp TGGCCGACAGTGCAAGACCCGGTTCGGTGCCCTTTGCATTCCGTTTaGGCAAGGTACCACCTCTGCTGCCACAAAACTGCTCCCCAGGCA +
Preference number: 6 (lower is better)
Translates to: WPTVQDPVRCPLHSV*ARYHLCCHKTAPQA
Trigger: TGCCTGGGGAGCAGTTTTGTGGCAGCAGAGGTGGTACCTTGCCAAAACGGAATGCAAAGGGCACCGAACCGGGTCTTGCACTGTCGGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS CAA 90 bp TCCCTCCATCCCTGGCCGACAGTGCAAGACCCGGTTCGGTGCCCTTaGCATTCCGTTTTGGCAAGGTACCACCTCTGCTGCCACAAAACT +
Preference number: 6 (lower is better)
Translates to: SLHPWPTVQDPVRCP*HSVLARYHLCCHKT
Trigger: AGTTTTGTGGCAGCAGAGGTGGTACCTTGCCAAAACGGAATGCAAAGGGCACCGAACCGGGTCTTGCACTGTCGGCCAGGGATGGAGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS CCA 72 bp CACCATCCTGGTCACCCAACAAGGAGTGTAAAGACTTaGTCCACCTGGTCAAAGGGGAATCGGGGGAGGCCC +
Preference number: 6 (lower is better)
Translates to: HHPGHPTRSVKT*STWSKGNRGRP
Trigger: GGGCCTCCCCCGATTCCCCTTTGACCAGGTGGACCAAGTCTTTACACTCCTTGTTGGGTGACCAGGATGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
ENSMUST00000140821.2
ENSMUST00000152909.2
CDS CAA 72 bp GCACCATCCTGGTCACCCAACAAGGAGTGTAAAGACTaGGTCCACCTGGTCAAAGGGGAATCGGGGGAGGCC +
Preference number: 6 (lower is better)
Translates to: APSWSPNKECKD*VHLVKGESGEA
Trigger: GGCCTCCCCCGATTCCCCTTTGACCAGGTGGACCAAGTCTTTACACTCCTTGTTGGGTGACCAGGATGGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
ENSMUST00000140821.2
ENSMUST00000152909.2
CDS CAA 72 bp TCCGTGGATCTCACACTCGCGGTGGCCCGAAGAGTTTaGCTGGACAAGCCAACCACGGTGGGTGAGAGTTTG +
Preference number: 6 (lower is better)
Translates to: SVDLTLAVARRV*LDKPTTVGESL
Trigger: CAAACTCTCACCCACCGTGGTTGGCTTGTCCAGCAAAACTCTTCGGGCCACCGCGAGTGTGAGATCCACGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CAA 90 bp TCAGCTGTTTCCGTGGATCTCACACTCGCGGTGGCCCGAAGAGTTTaGCTGGACAAGCCAACCACGGTGGGTGAGAGTTTGCACTTGAGG +
Preference number: 6 (lower is better)
Translates to: SAVSVDLTLAVARRV*LDKPTTVGESLHLR
Trigger: CCTCAAGTGCAAACTCTCACCCACCGTGGTTGGCTTGTCCAGCAAAACTCTTCGGGCCACCGCGAGTGTGAGATCCACGGAAACAGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS TCA 72 bp CCGAAGAGTTTTGCTGGACAAGCCAACCACGGTGGGTaGGAGTTTGCACTTGAGGTCGGCACACGTCCACTC +
Preference number: 6 (lower is better)
Translates to: PKSFAGQANHGG*EFALEVGTRPL
Trigger: GAGTGGACGTGTGCCGACCTCAAGTGCAAACTCTCACCCACCGTGGTTGGCTTGTCCAGCAAAACTCTTCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 72 bp CGTTTTCAGCTGTTTCCGTGGATCTCACACTCGCGGTaGCCCGAAGAGTTTTGCTGGACAAGCCAACCACGG +
Preference number: 6 (lower is better)
Translates to: RFQLFPWISHSR*PEEFCWTSQPR
Trigger: CCGTGGTTGGCTTGTCCAGCAAAACTCTTCGGGCCACCGCGAGTGTGAGATCCACGGAAACAGCTGAAAACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 72 bp GAGGGACTCCATCTACGCTACTGTCCGTCATGGACATaGAATCGTCGGTCAGTGCGTCGCTGGATAACTCGC +
Preference number: 6 (lower is better)
Translates to: EGLHLRYCPSWT*NRRSVRRWITR
Trigger: GCGAGTTATCCAGCGACGCACTGACCGACGATTCCATGTCCATGACGGACAGTAGCGTAGATGGAGTCCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 72 bp GGATGTAGTGGTGGTGAACGTGCTTCGTCGTCTGTTTaGTCAGGAAGCTCTTGCCTCCAAGGAGGGGGCAAG +
Preference number: 6 (lower is better)
Translates to: GCSGGERASSSV*SGSSCLQGGGK
Trigger: CTTGCCCCCTCCTTGGAGGCAAGAGCTTCCTGACCAAACAGACGACGAAGCACGTTCACCACCACTACATCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 72 bp TCTGTGTGGCTTCTGCCTCGATCTCCTCCTTGGTCTTaGGGACAGCGTGGTGGTGGATGTAGTGGTGGTGAA +
Preference number: 6 (lower is better)
Translates to: SVWLLPRSPPWS*GQRGGGCSGGE
Trigger: TTCACCACCACTACATCCACCACCACGCTGTCCCCAAGACCAAGGAGGAGATCGAGGCAGAAGCCACACAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 72 bp TCCTCTCCACTTTGCCCAGGATCCTGCCTTCGTACATaGGGAGCACTGTCTCGTCGTCCCAGATCTCCTCAA +
Preference number: 6 (lower is better)
Translates to: SSPLCPGSCLRT*GALSRRPRSPQ
Trigger: TTGAGGAGATCTGGGACGACGAGACAGTGCTCCCCATGTACGAAGGCAGGATCCTGGGCAAAGTGGAGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CAA 72 bp CACTGGCCTGGAGCGCGTGGACACTTGCCAGTTTCTTaGGCTCTTTGTGATCTTCTGGAGCCAGGCTTGGGT +
Preference number: 6 (lower is better)
Translates to: HWPGARGHLPVS*ALCDLLEPGLG
Trigger: ACCCAAGCCTGGCTCCAGAAGATCACAAAGAGCCAAAGAAACTGGCAAGTGTCCACGCGCTCCAGGCCAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 72 bp TTGGACTTGCTCTGCCGCTCACTCTCTAACATCCACTaGCAGACATCCTGTGACCGGTCTCCTTCTTCCCCA +
Preference number: 6 (lower is better)
Translates to: LDLLCRSLSNIH*QTSCDRSPSSP
Trigger: TGGGGAAGAAGGAGACCGGTCACAGGATGTCTGGCAGTGGATGTTAGAGAGTGAGCGGCAGAGCAAGTCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS CCA 72 bp GGTAAGGAGGGACTCCATCTACGCTACTGTCCGTCATaGACATGGAATCGTCGGTCAGTGCGTCGCTGGATA +
Preference number: 6 (lower is better)
Translates to: GKEGLHLRYCPS*TWNRRSVRRWI
Trigger: TATCCAGCGACGCACTGACCGACGATTCCATGTCCATGACGGACAGTAGCGTAGATGGAGTCCCTCCTTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 72 bp TGCAAGACCCGGTTCGGTGCCCTTTGCATTCCGTTTTaGCAAGGTACCACCTCTGCTGCCACAAAACTGCTC +
Preference number: 6 (lower is better)
Translates to: CKTRFGALCIPF*QGTTSAATKLL
Trigger: GAGCAGTTTTGTGGCAGCAGAGGTGGTACCTTGCCAAAACGGAATGCAAAGGGCACCGAACCGGGTCTTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS CAA 72 bp CTGGACAAGCCAACCACGGTGGGTGAGAGTTTGCACTaGAGGTCGGCACACGTCCACTCCTCTTCTTCATTC +
Preference number: 6 (lower is better)
Translates to: LDKPTTVGESLH*RSAHVHSSSSF
Trigger: GAATGAAGAAGAGGAGTGGACGTGTGCCGACCTCAAGTGCAAACTCTCACCCACCGTGGTTGGCTTGTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CAA 72 bp GTTTTGCTGGACAAGCCAACCACGGTGGGTGAGAGTTaGCACTTGAGGTCGGCACACGTCCACTCCTCTTCT +
Preference number: 6 (lower is better)
Translates to: VLLDKPTTVGES*HLRSAHVHSSS
Trigger: AGAAGAGGAGTGGACGTGTGCCGACCTCAAGTGCAAACTCTCACCCACCGTGGTTGGCTTGTCCAGCAAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CAA 72 bp GTGCAAGACCCGGTTCGGTGCCCTTTGCATTCCGTTTaGGCAAGGTACCACCTCTGCTGCCACAAAACTGCT +
Preference number: 6 (lower is better)
Translates to: VQDPVRCPLHSV*ARYHLCCHKTA
Trigger: AGCAGTTTTGTGGCAGCAGAGGTGGTACCTTGCCAAAACGGAATGCAAAGGGCACCGAACCGGGTCTTGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS CAA 90 bp AGAGTTTTGCTGGACAAGCCAACCACGGTGGGTGAGAGTTTGCACTaGAGGTCGGCACACGTCCACTCCTCTTCTTCATTCAAGGTGGGG +
Preference number: 6 (lower is better)
Translates to: RVLLDKPTTVGESLH*RSAHVHSSSSFKVG
Trigger: CCCCACCTTGAATGAAGAAGAGGAGTGGACGTGTGCCGACCTCAAGTGCAAACTCTCACCCACCGTGGTTGGCTTGTCCAGCAAAACTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CAA 90 bp GCCCGAAGAGTTTTGCTGGACAAGCCAACCACGGTGGGTGAGAGTTaGCACTTGAGGTCGGCACACGTCCACTCCTCTTCTTCATTCAAG +
Preference number: 6 (lower is better)
Translates to: ARRVLLDKPTTVGES*HLRSAHVHSSSSFK
Trigger: CTTGAATGAAGAAGAGGAGTGGACGTGTGCCGACCTCAAGTGCAAACTCTCACCCACCGTGGTTGGCTTGTCCAGCAAAACTCTTCGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS TCA 72 bp TGGACAAGCCAACCACGGTGGGTGAGAGTTTGCACTTaGGGTCGGCACACGTCCACTCCTCTTCTTCATTCA +
Preference number: 6 (lower is better)
Translates to: WTSQPRWVRVCT*GRHTSTPLLHS
Trigger: TGAATGAAGAAGAGGAGTGGACGTGTGCCGACCTCAAGTGCAAACTCTCACCCACCGTGGTTGGCTTGTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 72 bp GATGCATCTCTCTCTGGAGCTGTTTCTTACTCCCCATaGGGTAAGGAGGGACTCCATCTACGCTACTGTCCG +
Preference number: 6 (lower is better)
Translates to: DASLSGAVSYSP*GKEGLHLRYCP
Trigger: CGGACAGTAGCGTAGATGGAGTCCCTCCTTACCGCATGGGGAGTAAGAAACAGCTCCAGAGAGAGATGCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 72 bp CTTATGCTTTGGGCACTATGGGGCTTGGACTTGCTCTaGCGCTCACTCTCTAACATCCACTGCCAGACATCC +
Preference number: 6 (lower is better)
Translates to: LMLWALWGLDLL*RSLSNIHCQTS
Trigger: GGATGTCTGGCAGTGGATGTTAGAGAGTGAGCGGCAGAGCAAGTCCAAGCCCCATAGTGCCCAAAGCATAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS GCA 72 bp GAGCACTGTCTCGTCGTCCCAGATCTCCTCAAAAACTaGTCCGCAGGCAAATTCGTCACTCGCCTTCTTGAA +
Preference number: 6 (lower is better)
Translates to: EHCLVVPDLLKN*SAGKFVTRLLE
Trigger: TTCAAGAAGGCGAGTGACGAATTTGCCTGCGGAGCAGTTTTTGAGGAGATCTGGGACGACGAGACAGTGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CAA 72 bp GCTGAGCTGCTCCTTGAAGTGGCCCAGGGTCAAGCTTaGAGCCTTCAGCATCCTCCTGTATGGAATTTCTTC +
Preference number: 6 (lower is better)
Translates to: AELLLEVAQGQA*SLQHPPVWNFF
Trigger: GAAGAAATTCCATACAGGAGGATGCTGAAGGCTCAAAGCTTGACCCTGGGCCACTTCAAGGAGCAGCTCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 72 bp TCTTTCTTATGCTTTGGGCACTATGGGGCTTGGACTTaGTCTGCCGCTCACTCTCTAACATCCACTGCCAGA +
Preference number: 6 (lower is better)
Translates to: SFLCFGHYGAWT*SAAHSLTSTAR
Trigger: TCTGGCAGTGGATGTTAGAGAGTGAGCGGCAGAGCAAGTCCAAGCCCCATAGTGCCCAAAGCATAAGAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS CCA 72 bp GGTAGCTCTTTCTTATGCTTTGGGCACTATGGGGCTTaGACTTGCTCTGCCGCTCACTCTCTAACATCCACT +
Preference number: 6 (lower is better)
Translates to: GSSFLCFGHYGA*TCSAAHSLTST
Trigger: AGTGGATGTTAGAGAGTGAGCGGCAGAGCAAGTCCAAGCCCCATAGTGCCCAAAGCATAAGAAAGAGCTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052915.14
CDS GCA 72 bp AATGAGGTAGAGACACTTGGCCATTGGCCTTCACACTaGGATGCATCTCTCTCTGGAGCTGTTTCTTACTCC +
Preference number: 6 (lower is better)
Translates to: NEVETLGHWPSH*DASLSGAVSYS
Trigger: GGAGTAAGAAACAGCTCCAGAGAGAGATGCATCGCAGTGTGAAGGCCAATGGCCAAGTGTCTCTACCTCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 72 bp CTCGTATGTAGGTCTTGGTGGCGGGCTTCAGCTGCTTaGAGACAACGCTGTTGTTCTCAATGTACCTCTTAT +
Preference number: 6 (lower is better)
Translates to: LVCRSWWRASAA*RQRCCSQCTSY
Trigger: ATAAGAGGTACATTGAGAACAACAGCGTTGTCTCCAAGCAGCTGAAGCCCGCCACCAAGACCTACATACGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 72 bp AAAGACATAGCCGGAACCTACGTGATAAGGATTGACTaGGTCGCTTCTCTTGAAGGACCTGAATCCGTTTTC +
Preference number: 6 (lower is better)
Translates to: KDIAGTYVIRID*VASLEGPESVF
Trigger: GAAAACGGATTCAGGTCCTTCAAGAGAAGCGACCCAGTCAATCCTTATCACGTAGGTTCCGGCTATGTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 72 bp CAGGGTCAAGCTTTGAGCCTTCAGCATCCTCCTGTATaGAATTTCTTCTCCACAGAAAAAGTAGGTGACAAC +
Preference number: 6 (lower is better)
Translates to: QGQALSLQHPPV*NFFSTEKVGDN
Trigger: GTTGTCACCTACTTTTTCTGTGGAGAAGAAATTCCATACAGGAGGATGCTGAAGGCTCAAAGCTTGACCCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CAA 90 bp GCTGCTTGGAGACAACGCTGTTGTTCTCAATGTACCTCTTATAGATaGCTTTGGCCACTCGCAAAGTTTTGGTATCCTTCAGGTTCATCT +
Preference number: 6 (lower is better)
Translates to: AAWRQRCCSQCTSYR*LWPLAKFWYPSGSS
Trigger: AGATGAACCTGAAGGATACCAAAACTTTGCGAGTGGCCAAAGCAATCTATAAGAGGTACATTGAGAACAACAGCGTTGTCTCCAAGCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS GCA 72 bp GACAACGCTGTTGTTCTCAATGTACCTCTTATAGATTaGTTTGGCCACTCGCAAAGTTTTGGTATCCTTCAG +
Preference number: 6 (lower is better)
Translates to: DNAVVLNVPLID*FGHSQSFGILQ
Trigger: CTGAAGGATACCAAAACTTTGCGAGTGGCCAAAGCAATCTATAAGAGGTACATTGAGAACAACAGCGTTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CCA 72 bp CGCTGTTGTTCTCAATGTACCTCTTATAGATTGCTTTaGCCACTCGCAAAGTTTTGGTATCCTTCAGGTTCA +
Preference number: 6 (lower is better)
Translates to: RCCSQCTSYRLL*PLAKFWYPSGS
Trigger: TGAACCTGAAGGATACCAAAACTTTGCGAGTGGCCAAAGCAATCTATAAGAGGTACATTGAGAACAACAGCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2
CDS CAA 72 bp AGACAACGCTGTTGTTCTCAATGTACCTCTTATAGATaGCTTTGGCCACTCGCAAAGTTTTGGTATCCTTCA +
Preference number: 6 (lower is better)
Translates to: RQRCCSQCTSYR*LWPLAKFWYPS
Trigger: TGAAGGATACCAAAACTTTGCGAGTGGCCAAAGCAATCTATAAGAGGTACATTGAGAACAACAGCGTTGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052915.14
ENSMUST00000106711.2