Pregenerated sensors for AWAT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015665Ensembl transcript IDs: ENSMUST00000096361.5
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | ATTATGGTCAGGAAGGAGCTCTTAATGCCCCTTCCATaGCTGCACACACAGCCTCCTTCATCTTCCTTCCTT | + |
|
Preference number: 3 (lower is better) Translates to: IMVRKELLMPLP*LHTQPPSSSFL Trigger: AAGGAAGGAAGATGAAGGAGGCTGTGTGTGCAGTCATGGAAGGGGCATTAAGAGCTCCTTCCTGACCATAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR TCA 90 bp | AGAATGCCTGGGTGGGGATCCTCAGGGACAACTCCTGCAGGGGTGCAGGCAGGGAAGGTAGGGACCAGATaGGCCCCATGTTGGAGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: RMPGWGSSGTTPAGVQAGKVGTR*APCWRA Trigger: AGCCCTCCAACATGGGGCTCATCTGGTCCCTACCTT...CCCTGCCTGCACCCCTGCAGGAGTTGTCCCTGAGGATCCCCACCCAGGCATTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR TCA 90 bp | AGAATGCCTGGGTGGGGATCCTCAGGGACAACTCCTGCAGGGGTGCAGGCAGGGACCCTTTGCGTTTCTTaGGGAGGAGGGTGGTGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: RMPGWGSSGTTPAGVQAGTLCVS*GGGWWC Trigger: ACACCACCACCCTCCTCCTCAAGAAACGCAAAGGGT...CCCTGCCTGCACCCCTGCAGGAGTTGTCCCTGAGGATCCCCACCCAGGCATTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CCA 90 bp | CCCTCTGAAGAATGCCTGGGTGGGGATCCTCAGGGACAACTCCTGCAGGGGTGCGTGAGGAGTGATGCCTaGGAAGGTCTTCGAGAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: PSEECLGGDPQGQLLQGCVRSDA*EGLREA Trigger: GGCTTCTCGAAGACCTTCCCAGGCATCACTCCTCAC...GCACCCCTGCAGGAGTTGTCCCTGAGGATCCCCACCCAGGCATTCTTCAGAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR TCA 90 bp | ATCCTCAGGGACAACTCCTGCAGGGGTGCAGGCAGGGGCAGTATTATGGTCAGGTGGCCAAGTGAGGAGTaGTGCCTGGGAAGGTCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: ILRDNSCRGAGRGSIMVRWPSEE*CLGRSS Trigger: CGAAGACCTTCCCAGGCATCACTCCTCACTTGGCCA...CCTGACCATAATACTGCCCCTGCCTGCACCCCTGCAGGAGTTGTCCCTGAGGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CCA 90 bp | AGAATGCCTGGGTGGGGATCCTCAGGGACAACTCCTGCAGGGGTGCAGGCAGGGTTTAACCTGGGGCAGTaGCAAAGCTTCCCCAACTAC | + |
|
Preference number: 4 (lower is better) Translates to: RMPGWGSSGTTPAGVQAGFNLGQ*QSFPNY Trigger: GTAGTTGGGGAAGCTTTGCCACTGCCCCAGGTTAAA...CCCTGCCTGCACCCCTGCAGGAGTTGTCCCTGAGGATCCCCACCCAGGCATTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CCA 90 bp | CAACTCCTGCAGGGGTGCAGGCAGGGGCAGTATTATGGTCAGGAAGGAGCTCTTCACTATCTCTGGGCTTaGGTTTTTAACCTGGGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: QLLQGCRQGQYYGQEGALHYLWA*VFNLGQ Trigger: CTGCCCCAGGTTAAAAACCCAAGCCCAGAGATAGTG...AAGAGCTCCTTCCTGACCATAATACTGCCCCTGCCTGCACCCCTGCAGGAGTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR GCA 90 bp | CTCCTGCAGGGGTGCAGGCAGGGGCAGTATTATGGTCAGGAAGGAGCTCTTAATCAGGTAGTCGATGGATaGCTGGCTCACAGAACACAA | + |
|
Preference number: 4 (lower is better) Translates to: LLQGCRQGQYYGQEGALNQVVDG*LAHRTQ Trigger: TTGTGTTCTGTGAGCCAGGCATCCATCGACTACCTG...ATTAAGAGCTCCTTCCTGACCATAATACTGCCCCTGCCTGCACCCCTGCAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CCA 90 bp | CCCTTTTCCAGAACTCCGGTTCTAGGCAACACAGTTTCTTCTTCAAAGCAGGTGAAGGTCAGGAGACCATaGGGGTGGACCCCCATGATG | + |
|
Preference number: 4 (lower is better) Translates to: PFSRTPVLGNTVSSSKQVKVRRP*GWTPMM Trigger: CATCATGGGGGTCCACCCCCATGGTCTCCTGACCTT...CACCTGCTTTGAAGAAGAAACTGTGTTGCCTAGAACCGGAGTTCTGGAAAAGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CCA 90 bp | TTCCAGAACTCCGGTTCTAGGCAACACAGTTTCTTCTTCAAAGCAGGTGCCGCCTCAGCAGGTAGTCGATaGATGCCTGGCTCACAGAAC | + |
|
Preference number: 4 (lower is better) Translates to: FQNSGSRQHSFFFKAGAASAGSR*MPGSQN Trigger: GTTCTGTGAGCCAGGCATCCATCGACTACCTGCTGA...GGCGGCACCTGCTTTGAAGAAGAAACTGTGTTGCCTAGAACCGGAGTTCTGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR GCA 90 bp | CTTAATGCCCCTTCCATGACTGCACACACAGCCTCCTTCATCTTCCTTCCTTTTCCACGAGGTTTCCAGTaGCATGGCTCAGCAGGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: LNAPSMTAHTASFIFLPFPRGFQ*HGSAGS Trigger: ACTACCTGCTGAGCCATGGCACTGGAAACCTCGTGG...AAAAGGAAGGAAGATGAAGGAGGCTGTGTGTGCAGTCATGGAAGGGGCATTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR GCA 90 bp | CCCTTTTCCAGAACTCCGGTTCTAGGCAACACAGTTTCTTCTTCAAAGCAGGTGCCTCAGTGCAGAAGTTaGAGAAGGCACCGAAGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: PFSRTPVLGNTVSSSKQVPQCRS*RRHRRS Trigger: TGACCTTCGGTGCCTTCTGCAACTTCTGCACTGAGG...CACCTGCTTTGAAGAAGAAACTGTGTTGCCTAGAACCGGAGTTCTGGAAAAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR GCA 90 bp | CCCTTTTCCAGAACTCCGGTTCTAGGCAACACAGTTTCTTCTTCAAAGCAGGTGCATGTTGGAGGGCTGTaGGCACAAACCCTTTGCGTT | + |
|
Preference number: 4 (lower is better) Translates to: PFSRTPVLGNTVSSSKQVHVGGL*AQTLCV Trigger: AACGCAAAGGGTTTGTGCGCACAGCCCTCCAACATG...CACCTGCTTTGAAGAAGAAACTGTGTTGCCTAGAACCGGAGTTCTGGAAAAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CCA 90 bp | CCCTTTTCCAGAACTCCGGTTCTAGGCAACACAGTTTCTTCTTCAAAGCAGGTGCTTGGGTTTTTAACCTaGGGCAGTGGCAAAGCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: PFSRTPVLGNTVSSSKQVLGFLT*GSGKAS Trigger: GGAAGCTTTGCCACTGCCCCAGGTTAAAAACCCAAG...CACCTGCTTTGAAGAAGAAACTGTGTTGCCTAGAACCGGAGTTCTGGAAAAGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR TCA 90 bp | AAACTGGATTTAAAAATTTCAGGTTCAGAAAGTACGTGTGACAAGAGGAGTCTAGACAGTGTGGCCAAGTaGGGAGTGATGCCTGGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: KLDLKISGSESTCDKRSLDSVAK*GVMPGK Trigger: CTTCCCAGGCATCACTCCTCACTTGGCCACACTGTC...TAGACTCCTCTTGTCACACGTACTTTCTGAACCTGAAATTTTTAAATCCAGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR GCA 90 bp | AAACTGGATTTAAAAATTTCAGGTTCAGAAAGTACGTGTGACAAGAGGAGTCTACCATACTGGACCTTGTaGTGCTCAAACAGCTTGTAC | + |
|
Preference number: 4 (lower is better) Translates to: KLDLKISGSESTCDKRSLPYWTL*CSNSLY Trigger: GTACAAGCTGTTTGAGCAGCACAAGGTCCAGTATGG...TAGACTCCTCTTGTCACACGTACTTTCTGAACCTGAAATTTTTAAATCCAGTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR GCA 90 bp | AAACTGGATTTAAAAATTTCAGGTTCAGAAAGTACGTGTGACAAGAGGAGTCTAGGCGTCCATGTAGAGTaGATGGTATTTGTCCACTAT | + |
|
Preference number: 4 (lower is better) Translates to: KLDLKISGSESTCDKRSLGVHVE*MVFVHY Trigger: ATAGTGGACAAATACCATGCACTCTACATGGACGCC...TAGACTCCTCTTGTCACACGTACTTTCTGAACCTGAAATTTTTAAATCCAGTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CAA 90 bp | GGATCCTCAGGGACAACTCCTGCAGGGGTGCAGGCAGGGGCAGTATTATGGTCACCGGCGAAAGAGGCTTaGGAACTTGAACATCCGGCT | + |
|
Preference number: 5 (lower is better) Translates to: GSSGTTPAGVQAGAVLWSPAKEA*ELEHPA Trigger: AGCCGGATGTTCAAGTTCCAAAGCCTCTTTCGCCGG...TGACCATAATACTGCCCCTGCCTGCACCCCTGCAGGAGTTGTCCCTGAGGATCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CAA 90 bp | AGAATGCCTGGGTGGGGATCCTCAGGGACAACTCCTGCAGGGGTGCAGGCAGGGGAGTCCCTTGCAGTCTaGATGGAAACCTTGTCCATA | + |
|
Preference number: 5 (lower is better) Translates to: RMPGWGSSGTTPAGVQAGESLAV*METLSI Trigger: TATGGACAAGGTTTCCATCAAGACTGCAAGGGACTC...CCCTGCCTGCACCCCTGCAGGAGTTGTCCCTGAGGATCCCCACCCAGGCATTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CAA 90 bp | TCCTGCAGGGGTGCAGGCAGGGGCAGTATTATGGTCAGGAAGGAGCTCTTAATGCAGATGAGCCCCATGTaGGAGGGCTGTGCGCACAAA | + |
|
Preference number: 5 (lower is better) Translates to: SCRGAGRGSIMVRKELLMQMSPM*EGCAHK Trigger: TTTGTGCGCACAGCCCTCCAACATGGGGCTCATCTG...CATTAAGAGCTCCTTCCTGACCATAATACTGCCCCTGCCTGCACCCCTGCAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CAA 90 bp | ATCCTCAGGGACAACTCCTGCAGGGGTGCAGGCAGGGGCAGTATTATGGTCAGGCAGCCATACTGGACCTaGTGCTGCTCAAACAGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: ILRDNSCRGAGRGSIMVRQPYWT*CCSNSL Trigger: CAAGCTGTTTGAGCAGCACAAGGTCCAGTATGGCTG...CCTGACCATAATACTGCCCCTGCCTGCACCCCTGCAGGAGTTGTCCCTGAGGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS GCA 90 bp | GCCCACGAGGTTTCCAGTGCCATGGCTCAGCAGGTAGTCGATGGATaGCTGGCTCACAGAACACAATCCTTTGGCCATGATGTAGTCCCT | + |
|
Preference number: 5 (lower is better) Translates to: AHEVSSAMAQQVVDG*LAHRTQSFGHDVVP Trigger: AGGGACTACATCATGGCCAAAGGATTGTGTTCTGTGAGCCAGGCATCCATCGACTACCTGCTGAGCCATGGCACTGGAAACCTCGTGGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS TCA 90 bp | TCCCTAATAATGGGGATCTTGAAGAACCAGGACAGTGTGGCCAAGTaGGGAGTGATGCCTGGGAAGGTCTTCGAGAAGCCTGTGGCCTCA | + |
|
Preference number: 5 (lower is better) Translates to: SLIMGILKNQDSVAK*GVMPGKVFEKPVAS Trigger: TGAGGCCACAGGCTTCTCGAAGACCTTCCCAGGCATCACTCCTCACTTGGCCACACTGTCCTGGTTCTTCAAGATCCCCATTATTAGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS TCA 90 bp | TGGTCATATACCTCTGTTTCTCCGAACGTGAAGGTAGGGACCAGATaGGCCCCATGTTGGAGGGCTGTGCGCACAAACCCTTTGCGTTTC | + |
|
Preference number: 5 (lower is better) Translates to: WSYTSVSPNVKVGTR*APCWRAVRTNPLRF Trigger: GAAACGCAAAGGGTTTGTGCGCACAGCCCTCCAACATGGGGCTCATCTGGTCCCTACCTTCACGTTCGGAGAAACAGAGGTATATGACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CAA 90 bp | ATCCTCAGGGACAACTCCTGCAGGGGTGCAGGCAGGGGCAGTATTATGGTCAGGCTAATAATGGGGATCTaGAAGAACCAGGACAGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: ILRDNSCRGAGRGSIMVRLIMGI*KNQDSV Trigger: CACACTGTCCTGGTTCTTCAAGATCCCCATTATTAG...CCTGACCATAATACTGCCCCTGCCTGCACCCCTGCAGGAGTTGTCCCTGAGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CAA 90 bp | ACTCCGGTTCTAGGCAACACAGTTTCTTCTTCAAAGCAGGTGCCGCCCTTCTCTGTGCGCACAAACCCTTaGCGTTTCTTGAGGAGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: TPVLGNTVSSSKQVPPFSVRTNP*RFLRRR Trigger: CCTCCTCCTCAAGAAACGCAAAGGGTTTGTGCGCAC...AGAGAAGGGCGGCACCTGCTTTGAAGAAGAAACTGTGTTGCCTAGAACCGGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CAA 90 bp | ACTCCGGTTCTAGGCAACACAGTTTCTTCTTCAAAGCAGGTGCCGCCCTTCTCTATCAGCTTCTGGGTGTaGGAGCAGCCATACTGGACC | + |
|
Preference number: 5 (lower is better) Translates to: TPVLGNTVSSSKQVPPFSISFWV*EQPYWT Trigger: GGTCCAGTATGGCTGCTCCAACACCCAGAAGCTGAT...AGAGAAGGGCGGCACCTGCTTTGAAGAAGAAACTGTGTTGCCTAGAACCGGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CAA 90 bp | TCCTGCAGGGGTGCAGGCAGGGGCAGTATTATGGTCAGGAAGGAGCTCTTAATGGTCTTGATGGAAACCTaGTCCATAGAAGACACAGCA | + |
|
Preference number: 5 (lower is better) Translates to: SCRGAGRGSIMVRKELLMVLMET*SIEDTA Trigger: TGCTGTGTCTTCTATGGACAAGGTTTCCATCAAGAC...CATTAAGAGCTCCTTCCTGACCATAATACTGCCCCTGCCTGCACCCCTGCAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS GCA 90 bp | GACCTTGTGCTGCTCAAACAGCTTGTACAGGGCGTCCATGTAGAGTaGATGGTATTTGTCCACTATCTCTGGGCTTGGGTTTTTAACCTG | + |
|
Preference number: 5 (lower is better) Translates to: DLVLLKQLVQGVHVE*MVFVHYLWAWVFNL Trigger: CAGGTTAAAAACCCAAGCCCAGAGATAGTGGACAAATACCATGCACTCTACATGGACGCCCTGTACAAGCTGTTTGAGCAGCACAAGGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS CCA 90 bp | AGTGCATGGTATTTGTCCACTATCTCTGGGCTTGGGTTTTTAACCTaGGGCAGTGGCAAAGCTTCCCCAACTACAGTGATGATGGGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: SAWYLSTISGLGFLT*GSGKASPTTVMMGL Trigger: CAAACCCATCATCACTGTAGTTGGGGAAGCTTTGCCACTGCCCCAGGTTAAAAACCCAAGCCCAGAGATAGTGGACAAATACCATGCACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS TCA 90 bp | ATCCGGCGAAAGAGGCTTTGGAACTTGAACATCCGGCTATCCTCATaGAACAGTACCTGGTCATATACCTCTGTTTCTCCGAACGTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: IRRKRLWNLNIRLSS*NSTWSYTSVSPNVK Trigger: CTTCACGTTCGGAGAAACAGAGGTATATGACCAGGTACTGTTTCATGAGGATAGCCGGATGTTCAAGTTCCAAAGCCTCTTTCGCCGGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS TCA 90 bp | CACAGCAATAGAAACCAAAGATCCGGCGAAAGAGGCTTTGGAACTTaGACATCCGGCTATCCTCATGAAACAGTACCTGGTCATATACCT | + |
|
Preference number: 5 (lower is better) Translates to: HSNRNQRSGERGFGT*TSGYPHETVPGHIP Trigger: AGGTATATGACCAGGTACTGTTTCATGAGGATAGCCGGATGTTCAAGTTCCAAAGCCTCTTTCGCCGGATCTTTGGTTTCTATTGCTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS TCA 90 bp | GAAGTAACCAGACAAAGTAAACTGTTGGTAGCGGCCACAAGGGTGTaGACAATAGGCAAATTAACAATGGCTGCACAATCCAAAACATGG | + |
|
Preference number: 5 (lower is better) Translates to: EVTRQSKLLVAATRV*TIGKLTMAAQSKTW Trigger: CCATGTTTTGGATTGTGCAGCCATTGTTAATTTGCCTATTGTTCACACCCTTGTGGCCGCTACCAACAGTTTACTTTGTCTGGTTACTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS-3UTR CAA 90 bp | AAACTGGATTTAAAAATTTCAGGTTCAGAAAGTACGTGTGACAAGAGGAGTCTAAACCCTTTGCGTTTCTaGAGGAGGAGGGTGGTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: KLDLKISGSESTCDKRSLNPLRF*RRRVVV Trigger: CACCACCACCCTCCTCCTCAAGAAACGCAAAGGGTT...TAGACTCCTCTTGTCACACGTACTTTCTGAACCTGAAATTTTTAAATCCAGTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS CCA 72 bp | GAACCAGGACAGTGTGGCCAAGTGAGGAGTGATGCCTaGGAAGGTCTTCGAGAAGCCTGTGGCCTCAGTGCA | + |
|
Preference number: 6 (lower is better) Translates to: EPGQCGQVRSDA*EGLREACGLSA Trigger: TGCACTGAGGCCACAGGCTTCTCGAAGACCTTCCCAGGCATCACTCCTCACTTGGCCACACTGTCCTGGTTC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS TCA 72 bp | ACCTCTGTTTCTCCGAACGTGAAGGTAGGGACCAGATaGGCCCCATGTTGGAGGGCTGTGCGCACAAACCCT | + |
|
Preference number: 6 (lower is better) Translates to: TSVSPNVKVGTR*APCWRAVRTNP Trigger: AGGGTTTGTGCGCACAGCCCTCCAACATGGGGCTCATCTGGTCCCTACCTTCACGTTCGGAGAAACAGAGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS CCA 72 bp | CGAGGTTTCCAGTGCCATGGCTCAGCAGGTAGTCGATaGATGCCTGGCTCACAGAACACAATCCTTTGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: RGFQCHGSAGSR*MPGSQNTILWP Trigger: TGGCCAAAGGATTGTGTTCTGTGAGCCAGGCATCCATCGACTACCTGCTGAGCCATGGCACTGGAAACCTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS CAA 72 bp | ATCAGCTTCTGGGTGTTGGAGCAGCCATACTGGACCTaGTGCTGCTCAAACAGCTTGTACAGGGCGTCCATG | + |
|
Preference number: 6 (lower is better) Translates to: ISFWVLEQPYWT*CCSNSLYRASM Trigger: CATGGACGCCCTGTACAAGCTGTTTGAGCAGCACAAGGTCCAGTATGGCTGCTCCAACACCCAGAAGCTGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS GCA 72 bp | GTTTCCAGTGCCATGGCTCAGCAGGTAGTCGATGGATaGCTGGCTCACAGAACACAATCCTTTGGCCATGAT | + |
|
Preference number: 6 (lower is better) Translates to: VSSAMAQQVVDG*LAHRTQSFGHD Trigger: ATCATGGCCAAAGGATTGTGTTCTGTGAGCCAGGCATCCATCGACTACCTGCTGAGCCATGGCACTGGAAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS CCA 72 bp | GTAGAGTGCATGGTATTTGTCCACTATCTCTGGGCTTaGGTTTTTAACCTGGGGCAGTGGCAAAGCTTCCCC | + |
|
Preference number: 6 (lower is better) Translates to: VECMVFVHYLWA*VFNLGQWQSFP Trigger: GGGGAAGCTTTGCCACTGCCCCAGGTTAAAAACCCAAGCCCAGAGATAGTGGACAAATACCATGCACTCTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS CCA 72 bp | AAGAATATCAGCTTCTGGGTGTTGGAGCAGCCATACTaGACCTTGTGCTGCTCAAACAGCTTGTACAGGGCG | + |
|
Preference number: 6 (lower is better) Translates to: KNISFWVLEQPY*TLCCSNSLYRA Trigger: CGCCCTGTACAAGCTGTTTGAGCAGCACAAGGTCCAGTATGGCTGCTCCAACACCCAGAAGCTGATATTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS GCA 72 bp | CTGCTCAAACAGCTTGTACAGGGCGTCCATGTAGAGTaGATGGTATTTGTCCACTATCTCTGGGCTTGGGTT | + |
|
Preference number: 6 (lower is better) Translates to: LLKQLVQGVHVE*MVFVHYLWAWV Trigger: AACCCAAGCCCAGAGATAGTGGACAAATACCATGCACTCTACATGGACGCCCTGTACAAGCTGTTTGAGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS CCA 72 bp | TATTTGTCCACTATCTCTGGGCTTGGGTTTTTAACCTaGGGCAGTGGCAAAGCTTCCCCAACTACAGTGATG | + |
|
Preference number: 6 (lower is better) Translates to: YLSTISGLGFLT*GSGKASPTTVM Trigger: CATCACTGTAGTTGGGGAAGCTTTGCCACTGCCCCAGGTTAAAAACCCAAGCCCAGAGATAGTGGACAAATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS TCA 72 bp | AGAAACCAAAGATCCGGCGAAAGAGGCTTTGGAACTTaGACATCCGGCTATCCTCATGAAACAGTACCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: RNQRSGERGFGT*TSGYPHETVPG Trigger: ACCAGGTACTGTTTCATGAGGATAGCCGGATGTTCAAGTTCCAAAGCCTCTTTCGCCGGATCTTTGGTTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS CAA 90 bp | ATAGAAGACACAGCAATAGAAACCAAAGATCCGGCGAAAGAGGCTTaGGAACTTGAACATCCGGCTATCCTCATGAAACAGTACCTGGTC | + |
|
Preference number: 6 (lower is better) Translates to: IEDTAIETKDPAKEA*ELEHPAILMKQYLV Trigger: GACCAGGTACTGTTTCATGAGGATAGCCGGATGTTCAAGTTCCAAAGCCTCTTTCGCCGGATCTTTGGTTTCTATTGCTGTGTCTTCTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS TCA 72 bp | AAGAGGCTTTGGAACTTGAACATCCGGCTATCCTCATaGAACAGTACCTGGTCATATACCTCTGTTTCTCCG | + |
|
Preference number: 6 (lower is better) Translates to: KRLWNLNIRLSS*NSTWSYTSVSP Trigger: CGGAGAAACAGAGGTATATGACCAGGTACTGTTTCATGAGGATAGCCGGATGTTCAAGTTCCAAAGCCTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS CAA 72 bp | ACAGCAATAGAAACCAAAGATCCGGCGAAAGAGGCTTaGGAACTTGAACATCCGGCTATCCTCATGAAACAG | + |
|
Preference number: 6 (lower is better) Translates to: TAIETKDPAKEA*ELEHPAILMKQ Trigger: CTGTTTCATGAGGATAGCCGGATGTTCAAGTTCCAAAGCCTCTTTCGCCGGATCTTTGGTTTCTATTGCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||
| CDS TCA 72 bp | AGACAAAGTAAACTGTTGGTAGCGGCCACAAGGGTGTaGACAATAGGCAAATTAACAATGGCTGCACAATCC | + |
|
Preference number: 6 (lower is better) Translates to: RQSKLLVAATRV*TIGKLTMAAQS Trigger: GGATTGTGCAGCCATTGTTAATTTGCCTATTGTTCACACCCTTGTGGCCGCTACCAACAGTTTACTTTGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096361.5 |
||