RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AVPR1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020123

Ensembl transcript IDs: ENSMUST00000020323.7

Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGTTGGTGAGCATGATTTTCAGTGCTAATAGAGTGTCAGGACTCTaGAGGAAGGGCAGCCAGGTACCAAGCTACCTCCTTCCCACCCTC +
Preference number: 1 (lower is better)
Translates to: LLVSMIFSANRVSGL*RKGSQVPSYLLPTL
Trigger: GAGGGTGGGAAGGAGGTAGCTTGGTACCTGGCTGCCCTTCCTTCAGAGTCCTGACACTCTATTAGCACTGAAAATCATGCTCACCAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
3UTR CCA 90 bp TCTGTCTGTCTCCCGTTTCTCCACATGTCTTCACCCTCTGTGTTCTaGCCCTGCTGTGTGGATGGGAAATGTGAAGAAATAAATAAACTG +
Preference number: 1 (lower is better)
Translates to: SVCLPFLHMSSPSVF*PCCVDGKCEEINKL
Trigger: CAGTTTATTTATTTCTTCACATTTCCCATCCACACAGCAGGGCCAGAACACAGAGGGTGAAGACATGTGGAGAAACGGGAGACAGACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
3UTR-3UTR CCA 90 bp CTGTCTCCCGTTTCTCCACATGTCTTCACCCTCTGTGTTCTGGCCCTGCTGTGTCTTAAGCTCTCTAGCTaGACACACAAGCCCCGTCCA +
Preference number: 2 (lower is better)
Translates to: LSPVSPHVFTLCVLALLCLKLSS*THKPRP
Trigger: TGGACGGGGCTTGTGTGTCCAGCTAGAGAGCTTAAG...ACACAGCAGGGCCAGAACACAGAGGGTGAAGACATGTGGAGAAACGGGAGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
3UTR-3UTR TCA 90 bp CTGTCTCCCGTTTCTCCACATGTCTTCACCCTCTGTGTTCTGGCCCTGCTGTGTCTCTCTACCTCTTGCTaGCATTTTATGACACACAGA +
Preference number: 2 (lower is better)
Translates to: LSPVSPHVFTLCVLALLCLSTSC*HFMTHR
Trigger: TCTGTGTGTCATAAAATGTCAGCAAGAGGTAGAGAG...ACACAGCAGGGCCAGAACACAGAGGGTGAAGACATGTGGAGAAACGGGAGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
3UTR-3UTR GCA 90 bp CACAGACTACCTTATGGTGCTGGTCCATGGATGTTTAAAATATCCCAAAGAATGAAATCTTTTCTCTTATaGCTCTATAAAGTGTGGCAC +
Preference number: 2 (lower is better)
Translates to: HRLPYGAGPWMFKISQRMKSFLL*LYKVWH
Trigger: GTGCCACACTTTATAGAGGCATAAGAGAAAAGATTT...CATTCTTTGGGATATTTTAAACATCCATGGACCAGCACCATAAGGTAGTCTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
3UTR-3UTR CCA 90 bp CACAGACTACCTTATGGTGCTGGTCCATGGATGTTTAAAATATCCCAAAGAATGAAAGAATTCAGGTTTTaGTCACAGCAATGGGAAAAA +
Preference number: 2 (lower is better)
Translates to: HRLPYGAGPWMFKISQRMKEFRF*SQQWEK
Trigger: TTTTTCCCATTGCTGTGACCAAAACCTGAATTCTTT...CATTCTTTGGGATATTTTAAACATCCATGGACCAGCACCATAAGGTAGTCTGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
3UTR-3UTR CAA 90 bp CTGTCTCCCGTTTCTCCACATGTCTTCACCCTCTGTGTTCTGGCCCTGCTGTGTCAAACCTTCTGTCTGTaGGTGAGCATGATTTTCAGT +
Preference number: 3 (lower is better)
Translates to: LSPVSPHVFTLCVLALLCQTFCL*VSMIFS
Trigger: ACTGAAAATCATGCTCACCAACAGACAGAAGGTTTG...ACACAGCAGGGCCAGAACACAGAGGGTGAAGACATGTGGAGAAACGGGAGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
3UTR CCA 72 bp CTCCCGTTTCTCCACATGTCTTCACCCTCTGTGTTCTaGCCCTGCTGTGTGGATGGGAAATGTGAAGAAATA +
Preference number: 3 (lower is better)
Translates to: LPFLHMSSPSVF*PCCVDGKCEEI
Trigger: TATTTCTTCACATTTCCCATCCACACAGCAGGGCCAGAACACAGAGGGTGAAGACATGTGGAGAAACGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
3UTR-3UTR CAA 90 bp CTGTCTCCCGTTTCTCCACATGTCTTCACCCTCTGTGTTCTGGCCCTGCTGTGTAAAAGAATTCAGGTTTaGGTCACAGCAATGGGAAAA +
Preference number: 3 (lower is better)
Translates to: LSPVSPHVFTLCVLALLCKRIQV*VTAMGK
Trigger: TTTTCCCATTGCTGTGACCAAAACCTGAATTCTTTT...ACACAGCAGGGCCAGAACACAGAGGGTGAAGACATGTGGAGAAACGGGAGACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
3UTR CCA 72 bp TGTCACATAAACATATTTACTCTTAAGCTCTCTAGCTaGACACACAAGCCCCGTCCAAGAGTCTGGCTGCGT +
Preference number: 3 (lower is better)
Translates to: CHINIFTLKLSS*THKPRPRVWLR
Trigger: ACGCAGCCAGACTCTTGGACGGGGCTTGTGTGTCCAGCTAGAGAGCTTAAGAGTAAATATGTTTATGTGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR GCA 90 bp TTACTCTTAAGCTCTCTAGCTGGACACACAAGCCCCGTCCAAGAGTCTGGCTGCGAGCGGCGCGCGGGCTaGTGCAGGGTCTTGAGCGGG +
Preference number: 4 (lower is better)
Translates to: LLLSSLAGHTSPVQESGCERRAG*CRVLSG
Trigger: CCCGCTCAAGACCCTGCAGCAGCCCGCGCGCCGCTC...GCAGCCAGACTCTTGGACGGGGCTTGTGTGTCCAGCTAGAGAGCTTAAGAGTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR TCA 90 bp TATGACACACAGATTGACAGCAACACTGGGTTTTCAATCACGGACCAGTTCACTAAGAGGCGGCGATCATaGGGCGCGAGCGGCGCGCGG +
Preference number: 4 (lower is better)
Translates to: YDTQIDSNTGFSITDQFTKRRRS*GASGAR
Trigger: CCGCGCGCCGCTCGCGCCTCATGATCGCCGCCTCTT...AGTGAACTGGTCCGTGATTGAAAACCCAGTGTTGCTGTCAATCTGTGTGTCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CCA 90 bp TTACTCTTAAGCTCTCTAGCTGGACACACAAGCCCCGTCCAAGAGTCTGGCTGCCCACGAAGACCCCGCTaGTCATCCAGGTCACGTAGG +
Preference number: 4 (lower is better)
Translates to: LLLSSLAGHTSPVQESGCPRRPR*SSRSRR
Trigger: CCTACGTGACCTGGATGACCAGCGGGGTCTTCGTGG...GCAGCCAGACTCTTGGACGGGGCTTGTGTGTCCAGCTAGAGAGCTTAAGAGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR GCA 90 bp CTGACATTTTATGACACACAGATTGACAGCAACACTGGGTTTTCAATCACGGACTCGCCAGCTCCTCGTTaGGTACGTCCCCCGGCGGGC +
Preference number: 4 (lower is better)
Translates to: LTFYDTQIDSNTGFSITDSPAPR*VRPPAG
Trigger: GCCCGCCGGGGGACGTACGCAACGAGGAGCTGGCGA...GTCCGTGATTGAAAACCCAGTGTTGCTGTCAATCTGTGTGTCATAAAATGTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR GCA 90 bp TCACCCTCTGTGTTCTGGCCCTGCTGTGTGGATGGGAAATGTGAAGAAATAAATGGCGACCGCCAGGTCTaGCAGGCTGAGGTGTCGGAT +
Preference number: 4 (lower is better)
Translates to: SPSVFWPCCVDGKCEEINGDRQV*QAEVSD
Trigger: ATCCGACACCTCAGCCTGGCAGACCTGGCGGTCGCC...ATTTATTTCTTCACATTTCCCATCCACACAGCAGGGCCAGAACACAGAGGGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR GCA 90 bp CTGTCTCCCGTTTCTCCACATGTCTTCACCCTCTGTGTTCTGGCCCTGCTGTGTAACATGGCAAACACCTaGAAGTGCTTCACCACCCGG +
Preference number: 4 (lower is better)
Translates to: LSPVSPHVFTLCVLALLCNMANT*KCFTTR
Trigger: CCGGGTGGTGAAGCACTTGCAGGTGTTTGCCATGTT...ACACAGCAGGGCCAGAACACAGAGGGTGAAGACATGTGGAGAAACGGGAGACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR GCA 90 bp CACAGACTACCTTATGGTGCTGGTCCATGGATGTTTAAAATATCCCAAAGAATGCGGCGCGCGGGCTGCTaGAGGGTCTTGAGCGGGTGG +
Preference number: 4 (lower is better)
Translates to: HRLPYGAGPWMFKISQRMRRAGC*RVLSGW
Trigger: CCACCCGCTCAAGACCCTGCAGCAGCCCGCGCGCCG...CATTCTTTGGGATATTTTAAACATCCATGGACCAGCACCATAAGGTAGTCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR TCA 90 bp TTACTCTTAAGCTCTCTAGCTGGACACACAAGCCCCGTCCAAGAGTCTGGCTGCACCACATCTGGACGATaGAGAAAGGTGTCCAGCAGA +
Preference number: 4 (lower is better)
Translates to: LLLSSLAGHTSPVQESGCTTSGR*RKVSSR
Trigger: TCTGCTGGACACCTTTCTTCATCGTCCAGATGTGGT...GCAGCCAGACTCTTGGACGGGGCTTGTGTGTCCAGCTAGAGAGCTTAAGAGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR GCA 90 bp TTACTCTTAAGCTCTCTAGCTGGACACACAAGCCCCGTCCAAGAGTCTGGCTGCCGAATTTCTGCGCTATaGTTTGGCAGCATGGGAAGC +
Preference number: 4 (lower is better)
Translates to: LLLSSLAGHTSPVQESGCRISAL*FGSMGS
Trigger: GCTTCCCATGCTGCCAAAGCATAGCGCAGAAATTCG...GCAGCCAGACTCTTGGACGGGGCTTGTGTGTCCAGCTAGAGAGCTTAAGAGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CCA 90 bp TTACTCTTAAGCTCTCTAGCTGGACACACAAGCCCCGTCCAAGAGTCTGGCTGCTCACTGTGCGGATCTTaGCACGGGAAATGCTCTTCA +
Preference number: 4 (lower is better)
Translates to: LLLSSLAGHTSPVQESGCSLCGS*HGKCSS
Trigger: TGAAGAGCATTTCCCGTGCCAAGATCCGCACAGTGA...GCAGCCAGACTCTTGGACGGGGCTTGTGTGTCCAGCTAGAGAGCTTAAGAGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CCA 90 bp CTGTCTCCCGTTTCTCCACATGTCTTCACCCTCTGTGTTCTGGCCCTGCTGTGTCGGTCCAAACGAAATTaGTATCCCAGACTGACCACA +
Preference number: 4 (lower is better)
Translates to: LSPVSPHVFTLCVLALLCRSKRN*YPRLTT
Trigger: TGTGGTCAGTCTGGGATACCAATTTCGTTTGGACCG...ACACAGCAGGGCCAGAACACAGAGGGTGAAGACATGTGGAGAAACGGGAGACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CCA 90 bp CTGTCTCCCGTTTCTCCACATGTCTTCACCCTCTGTGTTCTGGCCCTGCTGTGTCAGCATGGGAAGCTCTaGACACAATCTTGTAGGAGA +
Preference number: 4 (lower is better)
Translates to: LSPVSPHVFTLCVLALLCQHGKL*TQSCRR
Trigger: TCTCCTACAAGATTGTGTCCAGAGCTTCCCATGCTG...ACACAGCAGGGCCAGAACACAGAGGGTGAAGACATGTGGAGAAACGGGAGACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CCA 90 bp CTGTCTCCCGTTTCTCCACATGTCTTCACCCTCTGTGTTCTGGCCCTGCTGTGTTATGCTTTGGCAGCATaGGAAGCTCTGGACACAATC +
Preference number: 4 (lower is better)
Translates to: LSPVSPHVFTLCVLALLCYALAA*EALDTI
Trigger: GATTGTGTCCAGAGCTTCCCATGCTGCCAAAGCATA...ACACAGCAGGGCCAGAACACAGAGGGTGAAGACATGTGGAGAAACGGGAGACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR TCA 90 bp CAACCACAAAATATAAAGTCAGTATGCTTACGAACCAGGCCTATACATTTCCCAGCTGCTGCAGGGTCTTaGGCGGGTGGCACACGGCGA +
Preference number: 4 (lower is better)
Translates to: QPQNIKSVCLRTRPIHFPAAAGS*AGGTRR
Trigger: TCGCCGTGTGCCACCCGCTCAAGACCCTGCAGCAGC...TGGGAAATGTATAGGCCTGGTTCGTAAGCATACTGACTTTATATTTTGTGGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR TCA 90 bp TTACTCTTAAGCTCTCTAGCTGGACACACAAGCCCCGTCCAAGAGTCTGGCTGCATTGGTATCCCAGACTaGCCACATCTGGACGATGAA +
Preference number: 4 (lower is better)
Translates to: LLLSSLAGHTSPVQESGCIGIPD*PHLDDE
Trigger: TTCATCGTCCAGATGTGGTCAGTCTGGGATACCAAT...GCAGCCAGACTCTTGGACGGGGCTTGTGTGTCCAGCTAGAGAGCTTAAGAGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR GCA 90 bp TCACCCTCTGTGTTCTGGCCCTGCTGTGTGGATGGGAAATGTGAAGAAATAAATGCAAACACCTGCAAGTaGTTCACCACCCGGCACAGC +
Preference number: 4 (lower is better)
Translates to: SPSVFWPCCVDGKCEEINANTCK*FTTRHS
Trigger: GCTGTGCCGGGTGGTGAAGCACTTGCAGGTGTTTGC...ATTTATTTCTTCACATTTCCCATCCACACAGCAGGGCCAGAACACAGAGGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR GCA 90 bp TCACCCTCTGTGTTCTGGCCCTGCTGTGTGGATGGGAAATGTGAAGAAATAAATCCTTCCACGTCCCAGTaGTGTTTGTTGGGCTTCGGT +
Preference number: 4 (lower is better)
Translates to: SPSVFWPCCVDGKCEEINPSTSQ*CLLGFG
Trigger: ACCGAAGCCCAACAAACAGCACTGGGACGTGGAAGG...ATTTATTTCTTCACATTTCCCATCCACACAGCAGGGCCAGAACACAGAGGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CCA 90 bp TCACCCTCTGTGTTCTGGCCCTGCTGTGTGGATGGGAAATGTGAAGAAATAAATAGCTGTGGTAACACTTaGAAGAAGGCGACCGCCAGG +
Preference number: 4 (lower is better)
Translates to: SPSVFWPCCVDGKCEEINSCGNT*KKATAR
Trigger: CCTGGCGGTCGCCTTCTTCCAAGTGTTACCACAGCT...ATTTATTTCTTCACATTTCCCATCCACACAGCAGGGCCAGAACACAGAGGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CCA 90 bp TTACTCTTAAGCTCTCTAGCTGGACACACAAGCCCCGTCCAAGAGTCTGGCTGCCCCAGTGCTGTTTGTTaGGCTTCGGTTGTTAGAATA +
Preference number: 4 (lower is better)
Translates to: LLLSSLAGHTSPVQESGCPSAVC*ASVVRI
Trigger: TATTCTAACAACCGAAGCCCAACAAACAGCACTGGG...GCAGCCAGACTCTTGGACGGGGCTTGTGTGTCCAGCTAGAGAGCTTAAGAGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CCA 90 bp TTTACTCTTAAGCTCTCTAGCTGGACACACAAGCCCCGTCCAAGAGTCTGGCTGAGCAATCTTGGGCTTTaGTGCCATTGTTCACCTCAA +
Preference number: 4 (lower is better)
Translates to: FTLKLSSWTHKPRPRVWLSNLGL*CHCSPQ
Trigger: TTGAGGTGAACAATGGCACCAAAGCCCAAGATTGCT...CAGCCAGACTCTTGGACGGGGCTTGTGTGTCCAGCTAGAGAGCTTAAGAGTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CCA 90 bp CAACCACAAAATATAAAGTCAGTATGCTTACGAACCAGGCCTATACATTTCCCAACCAGAAGCCCCTTGTaGAAGGGACCCGCGGCTTCC +
Preference number: 4 (lower is better)
Translates to: QPQNIKSVCLRTRPIHFPTRSPL*KGPAAS
Trigger: GGAAGCCGCGGGTCCCTTCCACAAGGGGCTTCTGGT...TGGGAAATGTATAGGCCTGGTTCGTAAGCATACTGACTTTATATTTTGTGGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR GCA 90 bp CAACCACAAAATATAAAGTCAGTATGCTTACGAACCAGGCCTATACATTTCCCAGCGCCAGCAGCACACTaGTATTACCCAGCACGGCCA +
Preference number: 4 (lower is better)
Translates to: QPQNIKSVCLRTRPIHFPAPAAH*YYPARP
Trigger: TGGCCGTGCTGGGTAATAGCAGTGTGCTGCTGGCGC...TGGGAAATGTATAGGCCTGGTTCGTAAGCATACTGACTTTATATTTTGTGGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR GCA 90 bp TCACCCTCTGTGTTCTGGCCCTGCTGTGTGGATGGGAAATGTGAAGAAATAAATTGTCGGATGAAGAGATaGATGCGGGATGTCTTGCGT +
Preference number: 4 (lower is better)
Translates to: SPSVFWPCCVDGKCEEINCRMKR*MRDVLR
Trigger: ACGCAAGACATCCCGCATGCATCTCTTCATCCGACA...ATTTATTTCTTCACATTTCCCATCCACACAGCAGGGCCAGAACACAGAGGGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR TCA 90 bp TCACCCTCTGTGTTCTGGCCCTGCTGTGTGGATGGGAAATGTGAAGAAATAAATAGATGTGGTAACAGATaGAGCCATAGCAGGTACCCA +
Preference number: 4 (lower is better)
Translates to: SPSVFWPCCVDGKCEEINRCGNR*SHSRYP
Trigger: TGGGTACCTGCTATGGCTTCATCTGTTACCACATCT...ATTTATTTCTTCACATTTCCCATCCACACAGCAGGGCCAGAACACAGAGGGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR TCA 90 bp CACAGACTACCTTATGGTGCTGGTCCATGGATGTTTAAAATATCCCAAAGAATGAGCAGGTACCCAAGATaGTCACGGGTACCACGAAGA +
Preference number: 4 (lower is better)
Translates to: HRLPYGAGPWMFKISQRMSRYPR*SRVPRR
Trigger: TCTTCGTGGTACCCGTGATCATCTTGGGTACCTGCT...CATTCTTTGGGATATTTTAAACATCCATGGACCAGCACCATAAGGTAGTCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR GCA 90 bp CAACCACAAAATATAAAGTCAGTATGCTTACGAACCAGGCCTATACATTTCCCACAGCATGTAGGAAGATaGGAACATGGCAAACACCTG +
Preference number: 4 (lower is better)
Translates to: QPQNIKSVCLRTRPIHFPQHVGR*EHGKHL
Trigger: CAGGTGTTTGCCATGTTCGCATCTTCCTACATGCTG...TGGGAAATGTATAGGCCTGGTTCGTAAGCATACTGACTTTATATTTTGTGGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CCA 90 bp CAACCACAAAATATAAAGTCAGTATGCTTACGAACCAGGCCTATACATTTCCCACAGACTGACCACATCTaGACGATGAAGAAAGGTGTC +
Preference number: 4 (lower is better)
Translates to: QPQNIKSVCLRTRPIHFPQTDHI*TMKKGV
Trigger: GACACCTTTCTTCATCGTCCAGATGTGGTCAGTCTG...TGGGAAATGTATAGGCCTGGTTCGTAAGCATACTGACTTTATATTTTGTGGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS GCA 90 bp CCTCCAGCTTCGCCAGCTCCTCGTTGCGTACGTCCCCCGGCGGGCTaGCGCCTTCCCCGAGCCCAGCTGCTTCCCGGCTGCTGTTGGCGC +
Preference number: 5 (lower is better)
Translates to: PPASPAPRCVRPPAG*RLPRAQLLPGCCWR
Trigger: GCGCCAACAGCAGCCGGGAAGCAGCTGGGCTCGGGGAAGGCGGCAGCCCGCCGGGGGACGTACGCAACGAGGAGCTGGCGAAGCTGGAGG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CCA 90 bp CCCGGCTGCTGTTGGCGCCCTCGGTGGTCAGAGGCCACCACGGGCTaGAGTTGCCCGCGGGCAGATCGTGGGAGCCTCGCGGGAAACTCA +
Preference number: 5 (lower is better)
Translates to: PGCCWRPRWSEATTG*SCPRADRGSLAGNS
Trigger: TGAGTTTCCCGCGAGGCTCCCACGATCTGCCCGCGGGCAACTCCAGCCCGTGGTGGCCTCTGACCACCGAGGGCGCCAACAGCAGCCGGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CCA 90 bp CTTCCCCGAGCCCAGCTGCTTCCCGGCTGCTGTTGGCGCCCTCGGTaGTCAGAGGCCACCACGGGCTGGAGTTGCCCGCGGGCAGATCGT +
Preference number: 5 (lower is better)
Translates to: LPRAQLLPGCCWRPR*SEATTGWSCPRADR
Trigger: ACGATCTGCCCGCGGGCAACTCCAGCCCGTGGTGGCCTCTGACCACCGAGGGCGCCAACAGCAGCCGGGAAGCAGCTGGGCTCGGGGAAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS GCA 90 bp CCAGAAGCCCCTTGTGGAAGGGACCCGCGGCTTCCCCAGAGCCCTTaGCGCCTTTGCTCTGTCGCGATGCTGTCTTCCCTCGGACATTGC +
Preference number: 5 (lower is better)
Translates to: PEAPCGRDPRLPQSP*RLCSVAMLSSLGHC
Trigger: GCAATGTCCGAGGGAAGACAGCATCGCGACAGAGCAAAGGCGGCAAGGGCTCTGGGGAAGCCGCGGGTCCCTTCCACAAGGGGCTTCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS GCA 90 bp TGCGGGATGTCTTGCGTGGCGTGCGATGCAGCGCCAGCAGCACACTaGTATTACCCAGCACGGCCACCACGAAAATCACCGCCAGCACGG +
Preference number: 5 (lower is better)
Translates to: CGMSCVACDAAPAAH*YYPARPPRKSPPAR
Trigger: CCGTGCTGGCGGTGATTTTCGTGGTGGCCGTGCTGGGTAATAGCAGTGTGCTGCTGGCGCTGCATCGCACGCCACGCAAGACATCCCGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CCA 90 bp ATGCTCTTCACGCTGCTGACACAAGGCGTGACCAGAAGCCCCTTGTaGAAGGGACCCGCGGCTTCCCCAGAGCCCTTGCCGCCTTTGCTC +
Preference number: 5 (lower is better)
Translates to: MLFTLLTQGVTRSPL*KGPAASPEPLPPLL
Trigger: GAGCAAAGGCGGCAAGGGCTCTGGGGAAGCCGCGGGTCCCTTCCACAAGGGGCTTCTGGTCACGCCTTGTGTCAGCAGCGTGAAGAGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS GCA 90 bp TGTCGGATGAAGAGATGCATGCGGGATGTCTTGCGTGGCGTGCGATaGAGCGCCAGCAGCACACTGCTATTACCCAGCACGGCCACCACG +
Preference number: 5 (lower is better)
Translates to: CRMKRCMRDVLRGVR*SASSTLLLPSTATT
Trigger: CGTGGTGGCCGTGCTGGGTAATAGCAGTGTGCTGCTGGCGCTGCATCGCACGCCACGCAAGACATCCCGCATGCATCTCTTCATCCGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CCA 90 bp CAGGCTGAGGTGTCGGATGAAGAGATGCATGCGGGATGTCTTGCGTaGCGTGCGATGCAGCGCCAGCAGCACACTGCTATTACCCAGCAC +
Preference number: 5 (lower is better)
Translates to: QAEVSDEEMHAGCLA*RAMQRQQHTAITQH
Trigger: GTGCTGGGTAATAGCAGTGTGCTGCTGGCGCTGCATCGCACGCCACGCAAGACATCCCGCATGCATCTCTTCATCCGACACCTCAGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CAA 90 bp CTGACATTTTATGACACACAGATTGACAGCAACACTGGGTTTTCAATCACGGACTTCGCCAGCTCCTCGTaGCGTACGTCCCCCGGCGGG +
Preference number: 5 (lower is better)
Translates to: LTFYDTQIDSNTGFSITDFASSS*RTSPGG
Trigger: CCCGCCGGGGGACGTACGCAACGAGGAGCTGGCGAA...GTCCGTGATTGAAAACCCAGTGTTGCTGTCAATCTGTGTGTCATAAAATGTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CAA 90 bp CTGACATTTTATGACACACAGATTGACAGCAACACTGGGTTTTCAATCACGGACGGCTGCTGCAGGGTCTaGAGCGGGTGGCACACGGCG +
Preference number: 5 (lower is better)
Translates to: LTFYDTQIDSNTGFSITDGCCRV*SGWHTA
Trigger: CGCCGTGTGCCACCCGCTCAAGACCCTGCAGCAGCC...GTCCGTGATTGAAAACCCAGTGTTGCTGTCAATCTGTGTGTCATAAAATGTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS TCA 90 bp AGATCCACGGGTTGCAGCAGCTGTTCAAGGAAGCCAGTAACGCCGTaGTCGTGGTGGAAGGGTTTTCGGAATCGGTCCAAACGAAATTGG +
Preference number: 5 (lower is better)
Translates to: RSTGCSSCSRKPVTP*SWWKGFRNRSKRNW
Trigger: CCAATTTCGTTTGGACCGATTCCGAAAACCCTTCCACCACGATCACGGCGTTACTGGCTTCCTTGAACAGCTGCTGCAACCCGTGGATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS GCA 90 bp GTCTGTCTCCGGCTCATGCTATCCGAGTCATCCTTGGCGAATTTCTaGGCTATGCTTTGGCAGCATGGGAAGCTCTGGACACAATCTTGT +
Preference number: 5 (lower is better)
Translates to: VCLRLMLSESSLANF*AMLWQHGKLWTQSC
Trigger: ACAAGATTGTGTCCAGAGCTTCCCATGCTGCCAAAGCATAGCGCAGAAATTCGCCAAGGATGACTCGGATAGCATGAGCCGGAGACAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CAA 90 bp TATGACACACAGATTGACAGCAACACTGGGTTTTCAATCACGGACCAGTTCACTTGCATGCGGGATGTCTaGCGTGGCGTGCGATGCAGC +
Preference number: 5 (lower is better)
Translates to: YDTQIDSNTGFSITDQFTCMRDV*RGVRCS
Trigger: GCTGCATCGCACGCCACGCAAGACATCCCGCATGCA...AGTGAACTGGTCCGTGATTGAAAACCCAGTGTTGCTGTCAATCTGTGTGTCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CAA 90 bp CTGACATTTTATGACACACAGATTGACAGCAACACTGGGTTTTCAATCACGGACGCTTCCCCAGAGCCCTaGCCGCCTTTGCTCTGTCGC +
Preference number: 5 (lower is better)
Translates to: LTFYDTQIDSNTGFSITDASPEP*PPLLCR
Trigger: GCGACAGAGCAAAGGCGGCAAGGGCTCTGGGGAAGC...GTCCGTGATTGAAAACCCAGTGTTGCTGTCAATCTGTGTGTCATAAAATGTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS GCA 90 bp TCCGGCTCATGCTATCCGAGTCATCCTTGGCGAATTTCTGCGCTATaGTTTGGCAGCATGGGAAGCTCTGGACACAATCTTGTAGGAGAT +
Preference number: 5 (lower is better)
Translates to: SGSCYPSHPWRISAL*FGSMGSSGHNLVGD
Trigger: ATCTCCTACAAGATTGTGTCCAGAGCTTCCCATGCTGCCAAAGCATAGCGCAGAAATTCGCCAAGGATGACTCGGATAGCATGAGCCGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS-3UTR CAA 90 bp CACAGACTACCTTATGGTGCTGGTCCATGGATGTTTAAAATATCCCAAAGAATGCAGCAATCTTGGGCTTaGGTGCCATTGTTCACCTCA +
Preference number: 5 (lower is better)
Translates to: HRLPYGAGPWMFKISQRMQQSWA*VPLFTS
Trigger: TGAGGTGAACAATGGCACCAAAGCCCAAGATTGCTG...CATTCTTTGGGATATTTTAAACATCCATGGACCAGCACCATAAGGTAGTCTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS GCA 72 bp TCGCCAGCTCCTCGTTGCGTACGTCCCCCGGCGGGCTaGCGCCTTCCCCGAGCCCAGCTGCTTCCCGGCTGC +
Preference number: 6 (lower is better)
Translates to: SPAPRCVRPPAG*RLPRAQLLPGC
Trigger: GCAGCCGGGAAGCAGCTGGGCTCGGGGAAGGCGGCAGCCCGCCGGGGGACGTACGCAACGAGGAGCTGGCGA
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CCA 72 bp CGCCTTCCCCGAGCCCAGCTGCTTCCCGGCTGCTGTTaGCGCCCTCGGTGGTCAGAGGCCACCACGGGCTGG +
Preference number: 6 (lower is better)
Translates to: RLPRAQLLPGCC*RPRWSEATTGW
Trigger: CCAGCCCGTGGTGGCCTCTGACCACCGAGGGCGCCAACAGCAGCCGGGAAGCAGCTGGGCTCGGGGAAGGCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CAA 72 bp CCGCCTTCCCCGAGCCCAGCTGCTTCCCGGCTGCTGTaGGCGCCCTCGGTGGTCAGAGGCCACCACGGGCTG +
Preference number: 6 (lower is better)
Translates to: PPSPSPAASRLL*APSVVRGHHGL
Trigger: CAGCCCGTGGTGGCCTCTGACCACCGAGGGCGCCAACAGCAGCCGGGAAGCAGCTGGGCTCGGGGAAGGCGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS GCA 72 bp CGCCCTCGGTGGTCAGAGGCCACCACGGGCTGGAGTTaGCCGCGGGCAGATCGTGGGAGCCTCGCGGGAAAC +
Preference number: 6 (lower is better)
Translates to: RPRWSEATTGWS*PRADRGSLAGN
Trigger: GTTTCCCGCGAGGCTCCCACGATCTGCCCGCGGGCAACTCCAGCCCGTGGTGGCCTCTGACCACCGAGGGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CAA 72 bp GCCAGCACGGTAACCTCCAGCTTCGCCAGCTCCTCGTaGCGTACGTCCCCCGGCGGGCTGCCGCCTTCCCCG +
Preference number: 6 (lower is better)
Translates to: ASTVTSSFASSS*RTSPGGLPPSP
Trigger: CGGGGAAGGCGGCAGCCCGCCGGGGGACGTACGCAACGAGGAGCTGGCGAAGCTGGAGGTTACCGTGCTGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CAA 90 bp ACCAGAAGCCCCTTGTGGAAGGGACCCGCGGCTTCCCCAGAGCCCTaGCCGCCTTTGCTCTGTCGCGATGCTGTCTTCCCTCGGACATTG +
Preference number: 6 (lower is better)
Translates to: TRSPLWKGPAASPEP*PPLLCRDAVFPRTL
Trigger: CAATGTCCGAGGGAAGACAGCATCGCGACAGAGCAAAGGCGGCAAGGGCTCTGGGGAAGCCGCGGGTCCCTTCCACAAGGGGCTTCTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CAA 90 bp GAAATGCTCTTCACGCTGCTGACACAAGGCGTGACCAGAAGCCCCTaGTGGAAGGGACCCGCGGCTTCCCCAGAGCCCTTGCCGCCTTTG +
Preference number: 6 (lower is better)
Translates to: EMLFTLLTQGVTRSP*WKGPAASPEPLPPL
Trigger: CAAAGGCGGCAAGGGCTCTGGGGAAGCCGCGGGTCCCTTCCACAAGGGGCTTCTGGTCACGCCTTGTGTCAGCAGCGTGAAGAGCATTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS GCA 72 bp GCCAGGTCTGCCAGGCTGAGGTGTCGGATGAAGAGATaGATGCGGGATGTCTTGCGTGGCGTGCGATGCAGC +
Preference number: 6 (lower is better)
Translates to: ARSARLRCRMKR*MRDVLRGVRCS
Trigger: GCTGCATCGCACGCCACGCAAGACATCCCGCATGCATCTCTTCATCCGACACCTCAGCCTGGCAGACCTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CAA 90 bp TCTGCCAGGCTGAGGTGTCGGATGAAGAGATGCATGCGGGATGTCTaGCGTGGCGTGCGATGCAGCGCCAGCAGCACACTGCTATTACCC +
Preference number: 6 (lower is better)
Translates to: SARLRCRMKRCMRDV*RGVRCSASSTLLLP
Trigger: GGGTAATAGCAGTGTGCTGCTGGCGCTGCATCGCACGCCACGCAAGACATCCCGCATGCATCTCTTCATCCGACACCTCAGCCTGGCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS GCA 72 bp AAGAGATGCATGCGGGATGTCTTGCGTGGCGTGCGATaGAGCGCCAGCAGCACACTGCTATTACCCAGCACG +
Preference number: 6 (lower is better)
Translates to: KRCMRDVLRGVR*SASSTLLLPST
Trigger: CGTGCTGGGTAATAGCAGTGTGCTGCTGGCGCTGCATCGCACGCCACGCAAGACATCCCGCATGCATCTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CCA 72 bp GTGTCGGATGAAGAGATGCATGCGGGATGTCTTGCGTaGCGTGCGATGCAGCGCCAGCAGCACACTGCTATT +
Preference number: 6 (lower is better)
Translates to: VSDEEMHAGCLA*RAMQRQQHTAI
Trigger: AATAGCAGTGTGCTGCTGGCGCTGCATCGCACGCCACGCAAGACATCCCGCATGCATCTCTTCATCCGACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CAA 90 bp GTAGGCACGGGTACCCCAGGGCGGGATGAAGGTAGCCCAGCAATCTaGGGCTTTGGTGCCATTGTTCACCTCAAATTCGATCACAGAGAA +
Preference number: 6 (lower is better)
Translates to: VGTGTPGRDEGSPAI*GFGAIVHLKFDHRE
Trigger: TTCTCTGTGATCGAATTTGAGGTGAACAATGGCACCAAAGCCCAAGATTGCTGGGCTACCTTCATCCCGCCCTGGGGTACCCGTGCCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS GCA 72 bp CGGCTCATGCTATCCGAGTCATCCTTGGCGAATTTCTaGGCTATGCTTTGGCAGCATGGGAAGCTCTGGACA +
Preference number: 6 (lower is better)
Translates to: RLMLSESSLANF*AMLWQHGKLWT
Trigger: TGTCCAGAGCTTCCCATGCTGCCAAAGCATAGCGCAGAAATTCGCCAAGGATGACTCGGATAGCATGAGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CCA 72 bp GTACCCCAGGGCGGGATGAAGGTAGCCCAGCAATCTTaGGCTTTGGTGCCATTGTTCACCTCAAATTCGATC +
Preference number: 6 (lower is better)
Translates to: VPQGGMKVAQQS*ALVPLFTSNSI
Trigger: GATCGAATTTGAGGTGAACAATGGCACCAAAGCCCAAGATTGCTGGGCTACCTTCATCCCGCCCTGGGGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CAA 72 bp GGTACCCCAGGGCGGGATGAAGGTAGCCCAGCAATCTaGGGCTTTGGTGCCATTGTTCACCTCAAATTCGAT +
Preference number: 6 (lower is better)
Translates to: GTPGRDEGSPAI*GFGAIVHLKFD
Trigger: ATCGAATTTGAGGTGAACAATGGCACCAAAGCCCAAGATTGCTGGGCTACCTTCATCCCGCCCTGGGGTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CAA 72 bp GATGTCTGTCTCCGGCTCATGCTATCCGAGTCATCCTaGGCGAATTTCTGCGCTATGCTTTGGCAGCATGGG +
Preference number: 6 (lower is better)
Translates to: DVCLRLMLSESS*ANFCAMLWQHG
Trigger: CCCATGCTGCCAAAGCATAGCGCAGAAATTCGCCAAGGATGACTCGGATAGCATGAGCCGGAGACAGACATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CCA 72 bp ATGTCTGTCTCCGGCTCATGCTATCCGAGTCATCCTTaGCGAATTTCTGCGCTATGCTTTGGCAGCATGGGA +
Preference number: 6 (lower is better)
Translates to: MSVSGSCYPSHP*RISALCFGSMG
Trigger: TCCCATGCTGCCAAAGCATAGCGCAGAAATTCGCCAAGGATGACTCGGATAGCATGAGCCGGAGACAGACAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CAA 72 bp CAGGGCGGGATGAAGGTAGCCCAGCAATCTTGGGCTTaGGTGCCATTGTTCACCTCAAATTCGATCACAGAG +
Preference number: 6 (lower is better)
Translates to: QGGMKVAQQSWA*VPLFTSNSITE
Trigger: CTCTGTGATCGAATTTGAGGTGAACAATGGCACCAAAGCCCAAGATTGCTGGGCTACCTTCATCCCGCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CAA 90 bp CGGGTACCCCAGGGCGGGATGAAGGTAGCCCAGCAATCTTGGGCTTaGGTGCCATTGTTCACCTCAAATTCGATCACAGAGAAGATAAAG +
Preference number: 6 (lower is better)
Translates to: RVPQGGMKVAQQSWA*VPLFTSNSITEKIK
Trigger: CTTTATCTTCTCTGTGATCGAATTTGAGGTGAACAATGGCACCAAAGCCCAAGATTGCTGGGCTACCTTCATCCCGCCCTGGGGTACCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CCA 72 bp TCCGAGTCATCCTTGGCGAATTTCTGCGCTATGCTTTaGCAGCATGGGAAGCTCTGGACACAATCTTGTAGG +
Preference number: 6 (lower is better)
Translates to: SESSLANFCAML*QHGKLWTQSCR
Trigger: CCTACAAGATTGTGTCCAGAGCTTCCCATGCTGCCAAAGCATAGCGCAGAAATTCGCCAAGGATGACTCGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CCA 72 bp CACCTCAAATTCGATCACAGAGAAGATAAAGTACTGTaGTATGCTCAGAACGAAACTCAGCCCCCAAGAGGC +
Preference number: 6 (lower is better)
Translates to: HLKFDHREDKVL*YAQNETQPPRG
Trigger: GCCTCTTGGGGGCTGAGTTTCGTTCTGAGCATACCACAGTACTTTATCTTCTCTGTGATCGAATTTGAGGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7
CDS CAA 72 bp ATGAAGGTAGCCCAGCAATCTTGGGCTTTGGTGCCATaGTTCACCTCAAATTCGATCACAGAGAAGATAAAG +
Preference number: 6 (lower is better)
Translates to: MKVAQQSWALVP*FTSNSITEKIK
Trigger: CTTTATCTTCTCTGTGATCGAATTTGAGGTGAACAATGGCACCAAAGCCCAAGATTGCTGGGCTACCTTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020323.7