Pregenerated sensors for AVPI1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018821Ensembl transcript IDs: ENSMUST00000018965.4, ENSMUST00000161873.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGAAGGACCCACAAGTGCAGAGTCCAACAGATGCTGGCTCTGAGCTaGACTCAGGGCATTCCAATTACCACTTTCTTCTTCACCTACACA | + |
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Preference number: 1 (lower is better) Translates to: RRTHKCRVQQMLALS*TQGIPITTFFFTYT Trigger: TGTGTAGGTGAAGAAGAAAGTGGTAATTGGAATGCCCTGAGTTCAGCTCAGAGCCAGCATCTGTTGGACTCTGCACTTGTGGGTCCTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| 3UTR CAA 90 bp | TTTAGGTCAGAAAGGCTGATGCGTGACCAGCCTCTATTGCCTCCCTaGGTAAGAAGGACCCACAAGTGCAGAGTCCAACAGATGCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: FRSERLMRDQPLLPP*VRRTHKCRVQQMLA Trigger: AGCCAGCATCTGTTGGACTCTGCACTTGTGGGTCCTTCTTACCAAGGGAGGCAATAGAGGCTGGTCACGCATCAGCCTTTCTGACCTAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| 3UTR-3UTR TCA 90 bp | GTTTCCCTTTTGCACTGGCCTGTGGCACAAAACAGATGGCTGGGTGGTGACATTATGCTGGCTCTGAGCTaGACTCAGGGCATTCCAATT | + |
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Preference number: 2 (lower is better) Translates to: VSLLHWPVAQNRWLGGDIMLALS*TQGIPI Trigger: AATTGGAATGCCCTGAGTTCAGCTCAGAGCCAGCAT...AATGTCACCACCCAGCCATCTGTTTTGTGCCACAGGCCAGTGCAAAAGGGAAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| 3UTR-3UTR TCA 90 bp | TTTCCACTTAAACAAGTTTCCCTTTTGCACTGGCCTGTGGCACAAAACAGATGGAGAAAGGCTGATGCGTaGCCAGCCTCTATTGCCTCC | + |
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Preference number: 2 (lower is better) Translates to: FPLKQVSLLHWPVAQNRWRKADA*PASIAS Trigger: GGAGGCAATAGAGGCTGGTCACGCATCAGCCTTTCT...CCATCTGTTTTGTGCCACAGGCCAGTGCAAAAGGGAAACTTGTTTAAGTGGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| 3UTR-3UTR GCA 90 bp | TTAACTGTCAAGTTAGTGAGATGCAGAGATGGTGAGACACTGCATTTGAGTGCATTTGGCCAAAGTCCCTaGAGTGTTTGGGGAGGACCT | + |
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Preference number: 2 (lower is better) Translates to: LTVKLVRCRDGETLHLSAFGQSP*SVWGGP Trigger: AGGTCCTCCCCAAACACTGCAGGGACTTTGGCCAAA...TGCACTCAAATGCAGTGTCTCACCATCTCTGCATCTCACTAACTTGACAGTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| 3UTR TCA 72 bp | GGACCCACAAGTGCAGAGTCCAACAGATGCTGGCTCTaGGCTGAACTCAGGGCATTCCAATTACCACTTTCT | + |
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Preference number: 3 (lower is better) Translates to: GPTSAESNRCWL*AELRAFQLPLS Trigger: AGAAAGTGGTAATTGGAATGCCCTGAGTTCAGCTCAGAGCCAGCATCTGTTGGACTCTGCACTTGTGGGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| 3UTR-3UTR CAA 90 bp | GACACTGCATTTGAGTGCATAATACTTTTATTCCAGAGGAACGCCATGCAGCCCCCTCTATTGCCTCCCTaGGTAAGAAGGACCCACAAG | + |
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Preference number: 3 (lower is better) Translates to: DTAFECIILLFQRNAMQPPLLPP*VRRTHK Trigger: CTTGTGGGTCCTTCTTACCAAGGGAGGCAATAGAGG...GGGCTGCATGGCGTTCCTCTGGAATAAAAGTATTATGCACTCAAATGCAGTGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| 3UTR TCA 72 bp | CACAAGTGCAGAGTCCAACAGATGCTGGCTCTGAGCTaGACTCAGGGCATTCCAATTACCACTTTCTTCTTC | + |
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Preference number: 3 (lower is better) Translates to: HKCRVQQMLALS*TQGIPITTFFF Trigger: GAAGAAGAAAGTGGTAATTGGAATGCCCTGAGTTCAGCTCAGAGCCAGCATCTGTTGGACTCTGCACTTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| 3UTR CCA 72 bp | GTTTCCCTTTTGCACTGGCCTGTGGCACAAAACAGATaGCTGGGTGGTGACATTAACTGTCAAGTTAGTGAG | + |
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Preference number: 3 (lower is better) Translates to: VSLLHWPVAQNR*LGGDINCQVSE Trigger: CTCACTAACTTGACAGTTAATGTCACCACCCAGCCATCTGTTTTGTGCCACAGGCCAGTGCAAAAGGGAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| 3UTR CCA 72 bp | TTCCACTTAAACAAGTTTCCCTTTTGCACTGGCCTGTaGCACAAAACAGATGGCTGGGTGGTGACATTAACT | + |
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Preference number: 3 (lower is better) Translates to: FHLNKFPFCTGL*HKTDGWVVTLT Trigger: AGTTAATGTCACCACCCAGCCATCTGTTTTGTGCCACAGGCCAGTGCAAAAGGGAAACTTGTTTAAGTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS-3UTR GCA 90 bp | CAGCCTCTATTGCCTCCCTTGGTAAGAAGGACCCACAAGTGCAGAGTCCAACAGTGGGCGGCCTTTTCCTaGGCAGCCTCCTCAGCGCCT | + |
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Preference number: 4 (lower is better) Translates to: QPLLPPLVRRTHKCRVQQWAAFS*AASSAP Trigger: AGGCGCTGAGGAGGCTGCGCAGGAAAAGGCCGCCCA...CTGTTGGACTCTGCACTTGTGGGTCCTTCTTACCAAGGGAGGCAATAGAGGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS-3UTR GCA 90 bp | GCCTCTATTGCCTCCCTTGGTAAGAAGGACCCACAAGTGCAGAGTCCAACAGATCCAGCTGGTCCCCACTaGGCTGGAACAGGCCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: ASIASLGKKDPQVQSPTDPAGPH*AGTGPG Trigger: TCCAGGGCCTGTTCCAGCGCAGTGGGGACCAGCTGG...ATCTGTTGGACTCTGCACTTGTGGGTCCTTCTTACCAAGGGAGGCAATAGAGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS-3UTR CCA 90 bp | CTTGGTAAGAAGGACCCACAAGTGCAGAGTCCAACAGATGCTGGCTCTGAGCTGAACCTGCCACAGGGGTaGCTCGCTCACGACAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: LGKKDPQVQSPTDAGSELNLPQG*LAHDRG Trigger: GCCTCTGTCGTGAGCGAGCCACCCCTGTGGCAGGTT...CAGCTCAGAGCCAGCATCTGTTGGACTCTGCACTTGTGGGTCCTTCTTACCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS-3UTR CCA 90 bp | CCTGCTCAGATGTCCTTTTTACAACTCCATAAGCCCTTTGGCCAAAGTCCCTGCCGCTCTTCAGCCAGCTaGTCCCCACTGCGCTGGAAC | + |
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Preference number: 4 (lower is better) Translates to: PAQMSFLQLHKPFGQSPCRSSAS*SPLRWN Trigger: GTTCCAGCGCAGTGGGGACCAGCTGGCTGAAGAGCG...GCAGGGACTTTGGCCAAAGGGCTTATGGAGTTGTAAAAAGGACATCTGAGCAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS-3UTR TCA 90 bp | TCACCTACACAGGGCCTGCTCAGATGTCCTTTTTACAACTCCATAAGCCCTTTGGCCTCAGCTACACGGTaGTCCCCTGCACACTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: SPTQGLLRCPFYNSISPLASATR*SPAHSQ Trigger: CTGGGAGTGTGCAGGGGATCACCGTGTAGCTGAGGC...CAAAGGGCTTATGGAGTTGTAAAAAGGACATCTGAGCAGGCCCTGTGTAGGTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS-3UTR CCA 90 bp | CAGCCTCTATTGCCTCCCTTGGTAAGAAGGACCCACAAGTGCAGAGTCCAACAGACCAGCTCAGCATCCTaGAAGATGTTGGCAGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: QPLLPPLVRRTHKCRVQQTSSAS*KMLAEA Trigger: GGCCTCTGCCAACATCTTCCAGGATGCTGAGCTGGT...CTGTTGGACTCTGCACTTGTGGGTCCTTCTTACCAAGGGAGGCAATAGAGGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS-3UTR CCA 90 bp | TTGCACTGGCCTGTGGCACAAAACAGATGGCTGGGTGGTGACATTAACTGTCAACGCTGGAACAGGCCCTaGATCTGGACCAGCTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: LHWPVAQNRWLGGDINCQRWNRP*IWTSSA Trigger: TGCTGAGCTGGTCCAGATCCAGGGCCTGTTCCAGCG...TTGACAGTTAATGTCACCACCCAGCCATCTGTTTTGTGCCACAGGCCAGTGCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| 3UTR CAA 72 bp | GAAAGGCTGATGCGTGACCAGCCTCTATTGCCTCCCTaGGTAAGAAGGACCCACAAGTGCAGAGTCCAACAG | + |
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Preference number: 4 (lower is better) Translates to: ERLMRDQPLLPP*VRRTHKCRVQQ Trigger: CTGTTGGACTCTGCACTTGTGGGTCCTTCTTACCAAGGGAGGCAATAGAGGCTGGTCACGCATCAGCCTTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS-3UTR CCA 90 bp | CACTTAAACAAGTTTCCCTTTTGCACTGGCCTGTGGCACAAAACAGATGGCTGGAACAGGCCCTGGATCTaGACCAGCTCAGCATCCTGG | + |
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Preference number: 4 (lower is better) Translates to: HLNKFPFCTGLWHKTDGWNRPWI*TSSASW Trigger: CCAGGATGCTGAGCTGGTCCAGATCCAGGGCCTGTT...CCAGCCATCTGTTTTGTGCCACAGGCCAGTGCAAAAGGGAAACTTGTTTAAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS-3UTR CCA 90 bp | CACTTAAACAAGTTTCCCTTTTGCACTGGCCTGTGGCACAAAACAGATGGCTGGTGCAGTGGTTCTGTTTaGGCGGCCTTTTCCTGCGCA | + |
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Preference number: 4 (lower is better) Translates to: HLNKFPFCTGLWHKTDGWCSGSV*AAFSCA Trigger: TGCGCAGGAAAAGGCCGCCCAAACAGAACCACTGCA...CCAGCCATCTGTTTTGTGCCACAGGCCAGTGCAAAAGGGAAACTTGTTTAAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS-3UTR CCA 90 bp | TCTTCTTCACCTACACAGGGCCTGCTCAGATGTCCTTTTTACAACTCCATAAGCTCAGTGGTGCTGGCCTaGGGGTCAGACGCTGTAGAA | + |
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Preference number: 4 (lower is better) Translates to: SSSPTQGLLRCPFYNSISSVVLA*GSDAVE Trigger: TTCTACAGCGTCTGACCCCCAGGCCAGCACCACTGA...GCTTATGGAGTTGTAAAAAGGACATCTGAGCAGGCCCTGTGTAGGTGAAGAAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS-3UTR GCA 90 bp | TCACCTACACAGGGCCTGCTCAGATGTCCTTTTTACAACTCCATAAGCCCTTTGTACACGGTGATCCCCTaGACACTCCCAGATTATCTG | + |
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Preference number: 4 (lower is better) Translates to: SPTQGLLRCPFYNSISPLYTVIP*TLPDYL Trigger: CAGATAATCTGGGAGTGTGCAGGGGATCACCGTGTA...CAAAGGGCTTATGGAGTTGTAAAAAGGACATCTGAGCAGGCCCTGTGTAGGTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS-3UTR CCA 90 bp | ACATTAACTGTCAAGTTAGTGAGATGCAGAGATGGTGAGACACTGCATTTGAGTCATCCTGGAAGATGTTaGCAGAGGCCTGCTTGCGGC | + |
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Preference number: 4 (lower is better) Translates to: TLTVKLVRCRDGETLHLSHPGRC*QRPACG Trigger: GCCGCAAGCAGGCCTCTGCCAACATCTTCCAGGATG...ACTCAAATGCAGTGTCTCACCATCTCTGCATCTCACTAACTTGACAGTTAATGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS-3UTR CCA 90 bp | TTAACTGTCAAGTTAGTGAGATGCAGAGATGGTGAGACACTGCATTTGAGTGCAGGTGGAGGTAACCTGTaGGGCCTGGCTTATTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: LTVKLVRCRDGETLHLSAGGGNL*GLAYSS Trigger: ACTGGAATAAGCCAGGCCCCACAGGTTACCTCCACC...TGCACTCAAATGCAGTGTCTCACCATCTCTGCATCTCACTAACTTGACAGTTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS TCA 90 bp | GGCGGCCTTTTCCTGCGCAGCCTCCTCAGCGCCTCAGCTACACGGTaGTCCCCTGCACACTCCCAGATTATCTGGGCCCGCTCTTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: GGLFLRSLLSASATR*SPAHSQIIWARSSA Trigger: GGCTGAAGAGCGGGCCCAGATAATCTGGGAGTGTGCAGGGGATCACCGTGTAGCTGAGGCGCTGAGGAGGCTGCGCAGGAAAAGGCCGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS CCA 90 bp | GCCCGCTCTTCAGCCAGCTGGTCCCCACTGCGCTGGAACAGGCCCTaGATCTGGACCAGCTCAGCATCCTGGAAGATGTTGGCAGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: ARSSASWSPLRWNRP*IWTSSASWKMLAEA Trigger: GGCCTCTGCCAACATCTTCCAGGATGCTGAGCTGGTCCAGATCCAGGGCCTGTTCCAGCGCAGTGGGGACCAGCTGGCTGAAGAGCGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS TCA 90 bp | GAAGATGTTGGCAGAGGCCTGCTTGCGGCCCCGGGTCTGAGGTGTTaGAACCTGCCACAGGGGTGGCTCGCTCACGACAGAGGCTGGAGT | + |
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Preference number: 5 (lower is better) Translates to: EDVGRGLLAAPGLRC*NLPQGWLAHDRGWS Trigger: ACTCCAGCCTCTGTCGTGAGCGAGCCACCCCTGTGGCAGGTTTCAACACCTCAGACCCGGGGCCGCAAGCAGGCCTCTGCCAACATCTTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS TCA 90 bp | GCATCCTGGAAGATGTTGGCAGAGGCCTGCTTGCGGCCCCGGGTCTaGGGTGTTGAAACCTGCCACAGGGGTGGCTCGCTCACGACAGAG | + |
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Preference number: 5 (lower is better) Translates to: ASWKMLAEACLRPRV*GVETCHRGGSLTTE Trigger: CTCTGTCGTGAGCGAGCCACCCCTGTGGCAGGTTTCAACACCTCAGACCCGGGGCCGCAAGCAGGCCTCTGCCAACATCTTCCAGGATGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS CCA 90 bp | TCCCCTGCACACTCCCAGATTATCTGGGCCCGCTCTTCAGCCAGCTaGTCCCCACTGCGCTGGAACAGGCCCTGGATCTGGACCAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: SPAHSQIIWARSSAS*SPLRWNRPWIWTSS Trigger: TGAGCTGGTCCAGATCCAGGGCCTGTTCCAGCGCAGTGGGGACCAGCTGGCTGAAGAGCGGGCCCAGATAATCTGGGAGTGTGCAGGGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS CCA 90 bp | TCAGACGCTGTAGAACCAGGCTCCGGCACTCTAAGCCGGCTGCAGTaGTTCTGTTTGGGCGGCCTTTTCCTGCGCAGCCTCCTCAGCGCC | + |
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Preference number: 5 (lower is better) Translates to: SDAVEPGSGTLSRLQ*FCLGGLFLRSLLSA Trigger: GGCGCTGAGGAGGCTGCGCAGGAAAAGGCCGCCCAAACAGAACCACTGCAGCCGGCTTAGAGTGCCGGAGCCTGGTTCTACAGCGTCTGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS GCA 90 bp | TCTGGACCAGCTCAGCATCCTGGAAGATGTTGGCAGAGGCCTGCTTaGGGCCCCGGGTCTGAGGTGTTGAAACCTGCCACAGGGGTGGCT | + |
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Preference number: 5 (lower is better) Translates to: SGPAQHPGRCWQRPA*GPGSEVLKPATGVA Trigger: AGCCACCCCTGTGGCAGGTTTCAACACCTCAGACCCGGGGCCGCAAGCAGGCCTCTGCCAACATCTTCCAGGATGCTGAGCTGGTCCAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS GCA 90 bp | ACTCCCAGATTATCTGGGCCCGCTCTTCAGCCAGCTGGTCCCCACTaGGCTGGAACAGGCCCTGGATCTGGACCAGCTCAGCATCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: TPRLSGPALQPAGPH*AGTGPGSGPAQHPG Trigger: TCCAGGATGCTGAGCTGGTCCAGATCCAGGGCCTGTTCCAGCGCAGTGGGGACCAGCTGGCTGAAGAGCGGGCCCAGATAATCTGGGAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS GCA 90 bp | TTTCCTGCGCAGCCTCCTCAGCGCCTCAGCTACACGGTGATCCCCTaGACACTCCCAGATTATCTGGGCCCGCTCTTCAGCCAGCTGGTC | + |
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Preference number: 5 (lower is better) Translates to: FPAQPPQRLSYTVIP*TLPDYLGPLFSQLV Trigger: GACCAGCTGGCTGAAGAGCGGGCCCAGATAATCTGGGAGTGTGCAGGGGATCACCGTGTAGCTGAGGCGCTGAGGAGGCTGCGCAGGAAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS CCA 90 bp | GGAACAGGCCCTGGATCTGGACCAGCTCAGCATCCTGGAAGATGTTaGCAGAGGCCTGCTTGCGGCCCCGGGTCTGAGGTGTTGAAACCT | + |
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Preference number: 5 (lower is better) Translates to: GTGPGSGPAQHPGRC*QRPACGPGSEVLKP Trigger: AGGTTTCAACACCTCAGACCCGGGGCCGCAAGCAGGCCTCTGCCAACATCTTCCAGGATGCTGAGCTGGTCCAGATCCAGGGCCTGTTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS CCA 90 bp | TCTTCAGCCAGCTGGTCCCCACTGCGCTGGAACAGGCCCTGGATCTaGACCAGCTCAGCATCCTGGAAGATGTTGGCAGAGGCCTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: SSASWSPLRWNRPWI*TSSASWKMLAEACL Trigger: CAAGCAGGCCTCTGCCAACATCTTCCAGGATGCTGAGCTGGTCCAGATCCAGGGCCTGTTCCAGCGCAGTGGGGACCAGCTGGCTGAAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS CCA 90 bp | CAGATTATCTGGGCCCGCTCTTCAGCCAGCTGGTCCCCACTGCGCTaGAACAGGCCCTGGATCTGGACCAGCTCAGCATCCTGGAAGATG | + |
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Preference number: 5 (lower is better) Translates to: QIIWARSSASWSPLR*NRPWIWTSSASWKM Trigger: CATCTTCCAGGATGCTGAGCTGGTCCAGATCCAGGGCCTGTTCCAGCGCAGTGGGGACCAGCTGGCTGAAGAGCGGGCCCAGATAATCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS TCA 72 bp | GGCAGAGGCCTGCTTGCGGCCCCGGGTCTGAGGTGTTaGAACCTGCCACAGGGGTGGCTCGCTCACGACAGA | + |
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Preference number: 6 (lower is better) Translates to: GRGLLAAPGLRC*NLPQGWLAHDR Trigger: TCTGTCGTGAGCGAGCCACCCCTGTGGCAGGTTTCAACACCTCAGACCCGGGGCCGCAAGCAGGCCTCTGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS CCA 72 bp | TGGGCCCGCTCTTCAGCCAGCTGGTCCCCACTGCGCTaGAACAGGCCCTGGATCTGGACCAGCTCAGCATCC | + |
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Preference number: 6 (lower is better) Translates to: WARSSASWSPLR*NRPWIWTSSAS Trigger: GGATGCTGAGCTGGTCCAGATCCAGGGCCTGTTCCAGCGCAGTGGGGACCAGCTGGCTGAAGAGCGGGCCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS CAA 72 bp | TGGCAGAGGCCTGCTTGCGGCCCCGGGTCTGAGGTGTaGAAACCTGCCACAGGGGTGGCTCGCTCACGACAG | + |
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Preference number: 6 (lower is better) Translates to: WQRPACGPGSEV*KPATGVARSRQ Trigger: CTGTCGTGAGCGAGCCACCCCTGTGGCAGGTTTCAACACCTCAGACCCGGGGCCGCAAGCAGGCCTCTGCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS GCA 72 bp | GGGGCTCTAGCACTTGTTCTCCGGGAGTTCCCAGACTaGTCGCTGGAGGCCGTGTCAGTGGTGCTGGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: GALALVLREFPD*SLEAVSVVLAW Trigger: CCAGGCCAGCACCACTGACACGGCCTCCAGCGAGCAGTCTGGGAACTCCCGGAGAACAAGTGCTAGAGCCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS CAA 90 bp | GGAAGATGTTGGCAGAGGCCTGCTTGCGGCCCCGGGTCTGAGGTGTaGAAACCTGCCACAGGGGTGGCTCGCTCACGACAGAGGCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: GRCWQRPACGPGSEV*KPATGVARSRQRLE Trigger: CTCCAGCCTCTGTCGTGAGCGAGCCACCCCTGTGGCAGGTTTCAACACCTCAGACCCGGGGCCGCAAGCAGGCCTCTGCCAACATCTTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS TCA 72 bp | AAGATGTTGGCAGAGGCCTGCTTGCGGCCCCGGGTCTaGGGTGTTGAAACCTGCCACAGGGGTGGCTCGCTC | + |
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Preference number: 6 (lower is better) Translates to: KMLAEACLRPRV*GVETCHRGGSL Trigger: GAGCGAGCCACCCCTGTGGCAGGTTTCAACACCTCAGACCCGGGGCCGCAAGCAGGCCTCTGCCAACATCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS TCA 72 bp | TTCCTGCGCAGCCTCCTCAGCGCCTCAGCTACACGGTaGTCCCCTGCACACTCCCAGATTATCTGGGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: FLRSLLSASATR*SPAHSQIIWAR Trigger: GCGGGCCCAGATAATCTGGGAGTGTGCAGGGGATCACCGTGTAGCTGAGGCGCTGAGGAGGCTGCGCAGGAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS GCA 72 bp | TTATCTGGGCCCGCTCTTCAGCCAGCTGGTCCCCACTaGGCTGGAACAGGCCCTGGATCTGGACCAGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: LSGPALQPAGPH*AGTGPGSGPAQ Trigger: CTGAGCTGGTCCAGATCCAGGGCCTGTTCCAGCGCAGTGGGGACCAGCTGGCTGAAGAGCGGGCCCAGATAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS GCA 72 bp | GCCGGCTGCAGTGGTTCTGTTTGGGCGGCCTTTTCCTaGGCAGCCTCCTCAGCGCCTCAGCTACACGGTGAT | + |
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Preference number: 6 (lower is better) Translates to: AGCSGSVWAAFS*AASSAPQLHGD Trigger: ATCACCGTGTAGCTGAGGCGCTGAGGAGGCTGCGCAGGAAAAGGCCGCCCAAACAGAACCACTGCAGCCGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS CCA 72 bp | CACTCCCAGATTATCTGGGCCCGCTCTTCAGCCAGCTaGTCCCCACTGCGCTGGAACAGGCCCTGGATCTGG | + |
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Preference number: 6 (lower is better) Translates to: HSQIIWARSSAS*SPLRWNRPWIW Trigger: CCAGATCCAGGGCCTGTTCCAGCGCAGTGGGGACCAGCTGGCTGAAGAGCGGGCCCAGATAATCTGGGAGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS CAA 90 bp | GTAGAACCAGGCTCCGGCACTCTAAGCCGGCTGCAGTGGTTCTGTTaGGGCGGCCTTTTCCTGCGCAGCCTCCTCAGCGCCTCAGCTACA | + |
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Preference number: 6 (lower is better) Translates to: VEPGSGTLSRLQWFC*GGLFLRSLLSASAT Trigger: TGTAGCTGAGGCGCTGAGGAGGCTGCGCAGGAAAAGGCCGCCCAAACAGAACCACTGCAGCCGGCTTAGAGTGCCGGAGCCTGGTTCTAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS CCA 72 bp | GTAGAACCAGGCTCCGGCACTCTAAGCCGGCTGCAGTaGTTCTGTTTGGGCGGCCTTTTCCTGCGCAGCCTC | + |
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Preference number: 6 (lower is better) Translates to: VEPGSGTLSRLQ*FCLGGLFLRSL Trigger: GAGGCTGCGCAGGAAAAGGCCGCCCAAACAGAACCACTGCAGCCGGCTTAGAGTGCCGGAGCCTGGTTCTAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018965.4 |
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| CDS GCA 72 bp | GCTCAGCATCCTGGAAGATGTTGGCAGAGGCCTGCTTaGGGCCCCGGGTCTGAGGTGTTGAAACCTGCCACA | + |
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Preference number: 6 (lower is better) Translates to: AQHPGRCWQRPA*GPGSEVLKPAT Trigger: TGTGGCAGGTTTCAACACCTCAGACCCGGGGCCGCAAGCAGGCCTCTGCCAACATCTTCCAGGATGCTGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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| CDS CCA 72 bp | AGCTGGTCCCCACTGCGCTGGAACAGGCCCTGGATCTaGACCAGCTCAGCATCCTGGAAGATGTTGGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: SWSPLRWNRPWI*TSSASWKMLAE Trigger: CTCTGCCAACATCTTCCAGGATGCTGAGCTGGTCCAGATCCAGGGCCTGTTCCAGCGCAGTGGGGACCAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018965.4 ENSMUST00000161873.2 |
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