RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AURKB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020897

Ensembl transcript IDs: ENSMUST00000021277.6, ENSMUST00000108666.8

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGAATCAGACTAGAGGGTTTCTTAAAAGTCAGTGCATGGGTGTTTTaGCTGCATACATGTATACCACATCCATGCCTAGTGTCTGCAGAG +
Preference number: 1 (lower is better)
Translates to: GIRLEGFLKVSAWVF*LHTCIPHPCLVSAE
Trigger: CTCTGCAGACACTAGGCATGGATGTGGTATACATGTATGCAGGCAAAACACCCATGCACTGACTTTTAAGAAACCCTCTAGTCTGATTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR GCA 90 bp GTTTGTTGTTTGTTTGTAACTTCATGTGTTTGGTGTGCATATATGTaGACCACAGGGGTGCCTAATTTTGCCTGTAGAGGTCAGAAGAGA +
Preference number: 1 (lower is better)
Translates to: VCCLFVTSCVWCAYM*TTGVPNFACRGQKR
Trigger: TCTCTTCTGACCTCTACAGGCAAAATTAGGCACCCCTGTGGTGCACATATATGCACACCAAACACATGAAGTTACAAACAAACAACAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR-3UTR GCA 90 bp AGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTGGGTGTTACAGACTGTGCACCACAGGGGTaGCTAATTTTGCCTGTAGAG +
Preference number: 2 (lower is better)
Translates to: SVCRGSKAPDSPGLGVTDCAPQG*LILPVE
Trigger: CTCTACAGGCAAAATTAGGCACCCCTGTGGTGCACA...GTCTGTAACACCCAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR-3UTR GCA 90 bp CATACATGTATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGTGTGCACCACAGGGGTaGCTAATTTTGCCTGTAGAG +
Preference number: 2 (lower is better)
Translates to: HTCIPHPCLVSAEARRPQCAPQG*LILPVE
Trigger: CTCTACAGGCAAAATTAGGCACCCCTGTGGTGCACA...CTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTATACATGTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR-3UTR GCA 90 bp CATACATGTATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGTTCATGTGTTTGGTGTaGATATATGTGCACCACAGG +
Preference number: 2 (lower is better)
Translates to: HTCIPHPCLVSAEARRPQFMCLV*IYVHHR
Trigger: CCTGTGGTGCACATATATGCACACCAAACACATGAA...CTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTATACATGTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR CAA 90 bp AGGAATCAGACTAGAGGGTTTCTTAAAAGTCAGTGCATGGGTGTTTaGCCTGCATACATGTATACCACATCCATGCCTAGTGTCTGCAGA +
Preference number: 2 (lower is better)
Translates to: RNQTRGFLKSQCMGV*PAYMYTTSMPSVCR
Trigger: TCTGCAGACACTAGGCATGGATGTGGTATACATGTATGCAGGCAAAACACCCATGCACTGACTTTTAAGAAACCCTCTAGTCTGATTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR GCA 72 bp CCTGCATACATGTATACCACATCCATGCCTAGTGTCTaGAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTG +
Preference number: 3 (lower is better)
Translates to: PAYMYTTSMPSV*RGSKAPDSPGL
Trigger: CAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTATACATGTATGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR-3UTR CAA 90 bp CATACATGTATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGCAGGGGTGCCTAATTTaGCCTGTAGAGGTCAGAAGA +
Preference number: 3 (lower is better)
Translates to: HTCIPHPCLVSAEARRPQQGCLI*PVEVRR
Trigger: TCTTCTGACCTCTACAGGCAAAATTAGGCACCCCTG...CTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTATACATGTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR-3UTR CAA 90 bp ATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGCATGTAGTGCTAGAATaGAGTTCTAGGTTCCTGGGA +
Preference number: 3 (lower is better)
Translates to: IPHPCLVSAEARRPQIPQHVVLE*SSRFLG
Trigger: TCCCAGGAACCTAGAACTCAATTCTAGCACTACATG...CTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR GCA 72 bp TGGGTGTTTTGCCTGCATACATGTATACCACATCCATaGCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATT +
Preference number: 3 (lower is better)
Translates to: WVFCLHTCIPHP*LVSAEARRPQI
Trigger: AATCTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTATACATGTATGCAGGCAAAACACCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR-3UTR CAA 90 bp ATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGCACTATCTGTGTGTTaGTTGTTTGTTTGTAACTTC +
Preference number: 3 (lower is better)
Translates to: IPHPCLVSAEARRPQIPQALSVC*LFVCNF
Trigger: GAAGTTACAAACAAACAACAAACACACAGATAGTGC...CTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR GCA 72 bp CTAGAGGGTTTCTTAAAAGTCAGTGCATGGGTGTTTTaGCTGCATACATGTATACCACATCCATGCCTAGTG +
Preference number: 3 (lower is better)
Translates to: LEGFLKVSAWVF*LHTCIPHPCLV
Trigger: CACTAGGCATGGATGTGGTATACATGTATGCAGGCAAAACACCCATGCACTGACTTTTAAGAAACCCTCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR CCA 72 bp GGAATCAGACTAGAGGGTTTCTTAAAAGTCAGTGCATaGGTGTTTTGCCTGCATACATGTATACCACATCCA +
Preference number: 3 (lower is better)
Translates to: GIRLEGFLKVSA*VFCLHTCIPHP
Trigger: TGGATGTGGTATACATGTATGCAGGCAAAACACCCATGCACTGACTTTTAAGAAACCCTCTAGTCTGATTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR-3UTR CAA 90 bp AGGAATCAGACTAGAGGGTTTCTTAAAAGTCAGTGCATGGGTGTTTTGCCTGCATGTAACTTCATGTGTTaGGTGTGCATATATGTGCAC +
Preference number: 3 (lower is better)
Translates to: RNQTRGFLKSQCMGVLPACNFMC*VCIYVH
Trigger: GTGCACATATATGCACACCAAACACATGAAGTTACA...TGCAGGCAAAACACCCATGCACTGACTTTTAAGAAACCCTCTAGTCTGATTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR GCA 72 bp GAAAGGAATCAGACTAGAGGGTTTCTTAAAAGTCAGTaGATGGGTGTTTTGCCTGCATACATGTATACCACA +
Preference number: 3 (lower is better)
Translates to: ERNQTRGFLKSQ*MGVLPAYMYTT
Trigger: TGTGGTATACATGTATGCAGGCAAAACACCCATGCACTGACTTTTAAGAAACCCTCTAGTCTGATTCCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR TCA 90 bp AGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTGGGTGTTACAGACAGGCAGAACCCTCCTTaGGTTGGCCCGGACCCAAGG +
Preference number: 4 (lower is better)
Translates to: SVCRGSKAPDSPGLGVTDRQNPP*VGPDPR
Trigger: CCTTGGGTCCGGGCCAACTCAAGGAGGGTTCTGCCT...GTCTGTAACACCCAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CCA 90 bp CTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTGGGTGTTACAGCTTCCTCCTCAGGGATaGGGCATGCACCGACCAGCC +
Preference number: 4 (lower is better)
Translates to: LVSAEARRPQIPQDWVLQLPPQG*GMHRPA
Trigger: GGCTGGTCGGTGCATGCCCCATCCCTGAGGAGGAAG...CTGTAACACCCAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CCA 90 bp ATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGCTTCCTCCTCAGGGATaGGGCATGCACCGACCAGCC +
Preference number: 4 (lower is better)
Translates to: IPHPCLVSAEARRPQIPQLPPQG*GMHRPA
Trigger: GGCTGGTCGGTGCATGCCCCATCCCTGAGGAGGAAG...CTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CCA 90 bp AGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTGGGTGTTACAGACGAACCCTCCTTGAGTTaGCCCGGACCCAAGGGTGAG +
Preference number: 4 (lower is better)
Translates to: SVCRGSKAPDSPGLGVTDEPSLS*PGPKGE
Trigger: CTCACCCTTGGGTCCGGGCCAACTCAAGGAGGGTTC...GTCTGTAACACCCAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR TCA 90 bp CTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTGGGTGTTACAGGAGGCAGTGGAGCCCTaGCTCTTGTTCTCAGCCAAC +
Preference number: 4 (lower is better)
Translates to: LVSAEARRPQIPQDWVLQEAVEP*LLFSAN
Trigger: GTTGGCTGAGAACAAGAGTCAGGGCTCCACTGCCTC...CTGTAACACCCAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR TCA 90 bp TCAGATCCCCTAGAACTGGAGCTAGGAATAGTTTCCAGTTCCCACCCCTTCTCAGCCCGGACCCAAGGGTaGGCTGCAACCTCCGCCAGG +
Preference number: 4 (lower is better)
Translates to: SDPLELELGIVSSSHPFSARTQG*AATSAR
Trigger: CCTGGCGGAGGTTGCAGCTCACCCTTGGGTCCGGGC...TGAGAAGGGGTGGGAACTGGAAACTATTCCTAGCTCCAGTTCTAGGGGATCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CCA 90 bp AGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTGGGTGTTACAGACTTGGAGATGAGGTCCTaGGCGCCCGAAGGCACAGAA +
Preference number: 4 (lower is better)
Translates to: SVCRGSKAPDSPGLGVTDLEMRS*APEGTE
Trigger: TTCTGTGCCTTCGGGCGCCCAGGACCTCATCTCCAA...GTCTGTAACACCCAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CCA 90 bp CTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTGGGTGTTACAGTTGGAGATGAGGTCCTaGGCGCCCGAAGGCACAGAA +
Preference number: 4 (lower is better)
Translates to: LVSAEARRPQIPQDWVLQLEMRS*APEGTE
Trigger: TTCTGTGCCTTCGGGCGCCCAGGACCTCATCTCCAA...CTGTAACACCCAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR TCA 90 bp ATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGAGACTGAGACGTCTTTaGGCCGTAGGGCCACGGGTA +
Preference number: 4 (lower is better)
Translates to: IPHPCLVSAEARRPQIPQRLRRL*AVGPRV
Trigger: TACCCGTGGCCCTACGGCTCAAAGACGTCTCAGTCT...CTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CCA 90 bp ATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGTTCTCAGCCAACTTCTaGCCAGGGGCAGCTGTGGAC +
Preference number: 4 (lower is better)
Translates to: IPHPCLVSAEARRPQIPQFSANF*PGAAVD
Trigger: GTCCACAGCTGCCCCTGGCCAGAAGTTGGCTGAGAA...CTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CCA 90 bp ATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGAGGGCTCTCGAAGGGTaGGTTCCCCACCATCAGTTC +
Preference number: 4 (lower is better)
Translates to: IPHPCLVSAEARRPQIPQRALEG*VPHHQF
Trigger: GAACTGATGGTGGGGAACCCACCCTTCGAGAGCCCT...CTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR TCA 90 bp CATACATGTATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGAGACTGAGACGTCTTTaGGCCGTAGGGCCACGGGTA +
Preference number: 4 (lower is better)
Translates to: HTCIPHPCLVSAEARRPQRLRRL*AVGPRV
Trigger: TACCCGTGGCCCTACGGCTCAAAGACGTCTCAGTCT...CTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTATACATGTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR TCA 90 bp CATACATGTATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGGAGGCAGTGGAGCCCTaGCTCTTGTTCTCAGCCAAC +
Preference number: 4 (lower is better)
Translates to: HTCIPHPCLVSAEARRPQEAVEP*LLFSAN
Trigger: GTTGGCTGAGAACAAGAGTCAGGGCTCCACTGCCTC...CTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTATACATGTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR TCA 90 bp GAGGTCAGAAGAGAGATCAGATCCCCTAGAACTGGAGCTAGGAATAGTTTCCAGAGGCAGAACCCTCCTTaGGTTGGCCCGGACCCAAGG +
Preference number: 4 (lower is better)
Translates to: EVRREIRSPRTGARNSFQRQNPP*VGPDPR
Trigger: CCTTGGGTCCGGGCCAACTCAAGGAGGGTTCTGCCT...CTGGAAACTATTCCTAGCTCCAGTTCTAGGGGATCTGATCTCTCTTCTGACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CCA 90 bp AGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTGGGTGTTACAGACAGAGTTGAAGGATGTTaGGATGTTTCAGGTGCGCCT +
Preference number: 4 (lower is better)
Translates to: SVCRGSKAPDSPGLGVTDRVEGC*DVSGAP
Trigger: AGGCGCACCTGAAACATCCCAACATCCTTCAACTCT...GTCTGTAACACCCAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CCA 90 bp CTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTGGGTGTTACAGAGAGTTGAAGGATGTTaGGATGTTTCAGGTGCGCCT +
Preference number: 4 (lower is better)
Translates to: LVSAEARRPQIPQDWVLQRVEGC*DVSGAP
Trigger: AGGCGCACCTGAAACATCCCAACATCCTTCAACTCT...CTGTAACACCCAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR GCA 90 bp CTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTGGGTGTTACAGTTCCAAATTTGCCTTTaGCCAAAGGACGCCCAATCT +
Preference number: 4 (lower is better)
Translates to: LVSAEARRPQIPQDWVLQFQICL*PKDAQS
Trigger: AGATTGGGCGTCCTTTGGGCAAAGGCAAATTTGGAA...CTGTAACACCCAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR GCA 90 bp ATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGACACGTTTCCAAATTTaGCTTTGCCCAAAGGACGCC +
Preference number: 4 (lower is better)
Translates to: IPHPCLVSAEARRPQIPQTRFQI*LCPKDA
Trigger: GGCGTCCTTTGGGCAAAGGCAAATTTGGAAACGTGT...CTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR GCA 90 bp ATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGCCATTTCATTATGCATaGGCCCCTCAATCATCTCTG +
Preference number: 4 (lower is better)
Translates to: IPHPCLVSAEARRPQIPQPFHYA*APQSSL
Trigger: CAGAGATGATTGAGGGGCGCATGCATAATGAAATGG...CTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR GCA 90 bp AGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTGGGTGTTACAGACTCTACCATTTCATTATaGATGCGCCCCTCAATCATC +
Preference number: 4 (lower is better)
Translates to: SVCRGSKAPDSPGLGVTDSTISL*MRPSII
Trigger: GATGATTGAGGGGCGCATGCATAATGAAATGGTAGA...GTCTGTAACACCCAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CCA 90 bp TACATGTATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTGTTTCAGGTGCGCCTaGATTTCGATCTCTCGGCGA +
Preference number: 4 (lower is better)
Translates to: YMYTTSMPSVCRGSKAPDCFRCA*ISISRR
Trigger: TCGCCGAGAGATCGAAATCCAGGCGCACCTGAAACA...ATCTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTATACATGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CCA 90 bp GAGGTCAGAAGAGAGATCAGATCCCCTAGAACTGGAGCTAGGAATAGTTTCCAGAGGGCTCTCGAAGGGTaGGTTCCCCACCATCAGTTC +
Preference number: 4 (lower is better)
Translates to: EVRREIRSPRTGARNSFQRALEG*VPHHQF
Trigger: GAACTGATGGTGGGGAACCCACCCTTCGAGAGCCCT...CTGGAAACTATTCCTAGCTCCAGTTCTAGGGGATCTGATCTCTCTTCTGACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CCA 90 bp AGGAATCAGACTAGAGGGTTTCTTAAAAGTCAGTGCATGGGTGTTTTGCCTGCAGAACCCTCCTTGAGTTaGCCCGGACCCAAGGGTGAG +
Preference number: 4 (lower is better)
Translates to: RNQTRGFLKSQCMGVLPAEPSLS*PGPKGE
Trigger: CTCACCCTTGGGTCCGGGCCAACTCAAGGAGGGTTC...TGCAGGCAAAACACCCATGCACTGACTTTTAAGAAACCCTCTAGTCTGATTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR GCA 90 bp TACATGTATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTTGGGATGTTTCAGGTaGGCCTGGATTTCGATCTCT +
Preference number: 4 (lower is better)
Translates to: YMYTTSMPSVCRGSKAPDLGCFR*AWISIS
Trigger: AGAGATCGAAATCCAGGCGCACCTGAAACATCCCAA...ATCTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTATACATGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR GCA 90 bp AGAGAGATCAGATCCCCTAGAACTGGAGCTAGGAATAGTTTCCAGTTCCCACCCCGACCAGCCAAAGTCTaGAATCTTCAGTTCTCCCTG +
Preference number: 4 (lower is better)
Translates to: REIRSPRTGARNSFQFPPRPAKV*NLQFSL
Trigger: CAGGGAGAACTGAAGATTGCAGACTTTGGCTGGTCG...GGGTGGGAACTGGAAACTATTCCTAGCTCCAGTTCTAGGGGATCTGATCTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR CAA 72 bp GGTGTGCATATATGTGCACCACAGGGGTGCCTAATTTaGCCTGTAGAGGTCAGAAGAGAGATCAGATCCCCT +
Preference number: 4 (lower is better)
Translates to: GVHICAPQGCLI*PVEVRREIRSP
Trigger: AGGGGATCTGATCTCTCTTCTGACCTCTACAGGCAAAATTAGGCACCCCTGTGGTGCACATATATGCACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR GCA 90 bp TACATGTATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTTCCAAATTTGCCTTTaGCCAAAGGACGCCCAATCT +
Preference number: 4 (lower is better)
Translates to: YMYTTSMPSVCRGSKAPDFQICL*PKDAQS
Trigger: AGATTGGGCGTCCTTTGGGCAAAGGCAAATTTGGAA...ATCTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTATACATGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR GCA 90 bp AGAGAGATCAGATCCCCTAGAACTGGAGCTAGGAATAGTTTCCAGTTCCCACCCTTGGGATGTTTCAGGTaGGCCTGGATTTCGATCTCT +
Preference number: 4 (lower is better)
Translates to: REIRSPRTGARNSFQFPPLGCFR*AWISIS
Trigger: AGAGATCGAAATCCAGGCGCACCTGAAACATCCCAA...GGGTGGGAACTGGAAACTATTCCTAGCTCCAGTTCTAGGGGATCTGATCTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR GCA 90 bp TCAGATCCCCTAGAACTGGAGCTAGGAATAGTTTCCAGTTCCCACCCCTTCTCAATCTTCAGTTCTCCCTaGAGACCTAACAGCAGGTTC +
Preference number: 4 (lower is better)
Translates to: SDPLELELGIVSSSHPFSIFSSP*RPNSRF
Trigger: GAACCTGCTGTTAGGTCTGCAGGGAGAACTGAAGAT...TGAGAAGGGGTGGGAACTGGAAACTATTCCTAGCTCCAGTTCTAGGGGATCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR GCA 90 bp GAGGTCAGAAGAGAGATCAGATCCCCTAGAACTGGAGCTAGGAATAGTTTCCAGCGACCAGCCAAAGTCTaGAATCTTCAGTTCTCCCTG +
Preference number: 4 (lower is better)
Translates to: EVRREIRSPRTGARNSFQRPAKV*NLQFSL
Trigger: CAGGGAGAACTGAAGATTGCAGACTTTGGCTGGTCG...CTGGAAACTATTCCTAGCTCCAGTTCTAGGGGATCTGATCTCTCTTCTGACCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR GCA 90 bp TCAGATCCCCTAGAACTGGAGCTAGGAATAGTTTCCAGTTCCCACCCCTTCTCACCATTTCATTATGCATaGGCCCCTCAATCATCTCTG +
Preference number: 4 (lower is better)
Translates to: SDPLELELGIVSSSHPFSPFHYA*APQSSL
Trigger: CAGAGATGATTGAGGGGCGCATGCATAATGAAATGG...TGAGAAGGGGTGGGAACTGGAAACTATTCCTAGCTCCAGTTCTAGGGGATCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CCA 90 bp AGGAATCAGACTAGAGGGTTTCTTAAAAGTCAGTGCATGGGTGTTTTGCCTGCATGTTTCAGGTGCGCCTaGATTTCGATCTCTCGGCGA +
Preference number: 4 (lower is better)
Translates to: RNQTRGFLKSQCMGVLPACFRCA*ISISRR
Trigger: TCGCCGAGAGATCGAAATCCAGGCGCACCTGAAACA...TGCAGGCAAAACACCCATGCACTGACTTTTAAGAAACCCTCTAGTCTGATTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR GCA 90 bp AGGAATCAGACTAGAGGGTTTCTTAAAAGTCAGTGCATGGGTGTTTTGCCTGCAATCTTCAGTTCTCCCTaGAGACCTAACAGCAGGTTC +
Preference number: 4 (lower is better)
Translates to: RNQTRGFLKSQCMGVLPAIFSSP*RPNSRF
Trigger: GAACCTGCTGTTAGGTCTGCAGGGAGAACTGAAGAT...TGCAGGCAAAACACCCATGCACTGACTTTTAAGAAACCCTCTAGTCTGATTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR GCA 90 bp GAGGTCAGAAGAGAGATCAGATCCCCTAGAACTGGAGCTAGGAATAGTTTCCAGTCTACCATTTCATTATaGATGCGCCCCTCAATCATC +
Preference number: 4 (lower is better)
Translates to: EVRREIRSPRTGARNSFQSTISL*MRPSII
Trigger: GATGATTGAGGGGCGCATGCATAATGAAATGGTAGA...CTGGAAACTATTCCTAGCTCCAGTTCTAGGGGATCTGATCTCTCTTCTGACCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR CAA 72 bp ACTAGAGGGTTTCTTAAAAGTCAGTGCATGGGTGTTTaGCCTGCATACATGTATACCACATCCATGCCTAGT +
Preference number: 4 (lower is better)
Translates to: TRGFLKSQCMGV*PAYMYTTSMPS
Trigger: ACTAGGCATGGATGTGGTATACATGTATGCAGGCAAAACACCCATGCACTGACTTTTAAGAAACCCTCTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
3UTR CAA 72 bp GAGCCATCTCTCCAGCACTATCTGTGTGTTTGTTGTTaGTTTGTAACTTCATGTGTTTGGTGTGCATATATG +
Preference number: 4 (lower is better)
Translates to: EPSLQHYLCVCC*FVTSCVWCAYM
Trigger: CATATATGCACACCAAACACATGAAGTTACAAACAAACAACAAACACACAGATAGTGCTGGAGAGATGGCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CAA 90 bp ATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGCTTGTTCTGGGATCCTaGCGAGGCAGTGGAGCCCTG +
Preference number: 5 (lower is better)
Translates to: IPHPCLVSAEARRPQIPQLVLGS*RGSGAL
Trigger: CAGGGCTCCACTGCCTCGCAAGGATCCCAGAACAAG...CTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS TCA 90 bp CCTTCTTCTTGTGGCAGTAGGTCAGGGCATCTGACAGTTCCTCCATaGTCGTGGCAGTCCGCTGCTCATCGAAGGTCCGACTCTTCTGCA +
Preference number: 5 (lower is better)
Translates to: PSSCGSRSGHLTVPP*SWQSAAHRRSDSSA
Trigger: TGCAGAAGAGTCGGACCTTCGATGAGCAGCGGACTGCCACGATCATGGAGGAACTGTCAGATGCCCTGACCTACTGCCACAAGAAGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CAA 90 bp TCAGATCCCCTAGAACTGGAGCTAGGAATAGTTTCCAGTTCCCACCCCTTCTCAGAGGCAGAACCCTCCTaGAGTTGGCCCGGACCCAAG +
Preference number: 5 (lower is better)
Translates to: SDPLELELGIVSSSHPFSEAEPS*SWPGPK
Trigger: CTTGGGTCCGGGCCAACTCAAGGAGGGTTCTGCCTC...TGAGAAGGGGTGGGAACTGGAAACTATTCCTAGCTCCAGTTCTAGGGGATCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CAA 90 bp CTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTGGGTGTTACAGTTTCCAAATTTGCCTTaGCCCAAAGGACGCCCAATC +
Preference number: 5 (lower is better)
Translates to: LVSAEARRPQIPQDWVLQFPNLP*PKGRPI
Trigger: GATTGGGCGTCCTTTGGGCAAAGGCAAATTTGGAAA...CTGTAACACCCAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CAA 90 bp AGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTGGGTGTTACAGACTACACGTTTCCAAATTaGCCTTTGCCCAAAGGACGC +
Preference number: 5 (lower is better)
Translates to: SVCRGSKAPDSPGLGVTDYTFPN*PLPKGR
Trigger: GCGTCCTTTGGGCAAAGGCAAATTTGGAAACGTGTA...GTCTGTAACACCCAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CAA 90 bp AGGAATCAGACTAGAGGGTTTCTTAAAAGTCAGTGCATGGGTGTTTTGCCTGCACTTGTTCTGGGATCCTaGCGAGGCAGTGGAGCCCTG +
Preference number: 5 (lower is better)
Translates to: RNQTRGFLKSQCMGVLPALVLGS*RGSGAL
Trigger: CAGGGCTCCACTGCCTCGCAAGGATCCCAGAACAAG...TGCAGGCAAAACACCCATGCACTGACTTTTAAGAAACCCTCTAGTCTGATTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CAA 90 bp CATACATGTATACCACATCCATGCCTAGTGTCTGCAGAGGCTCGAAGGCCCCAGTTTCCAAATTTGCCTTaGCCCAAAGGACGCCCAATC +
Preference number: 5 (lower is better)
Translates to: HTCIPHPCLVSAEARRPQFPNLP*PKGRPI
Trigger: GATTGGGCGTCCTTTGGGCAAAGGCAAATTTGGAAA...CTGGGGCCTTCGAGCCTCTGCAGACACTAGGCATGGATGTGGTATACATGTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CAA 90 bp CTAGTGTCTGCAGAGGCTCGAAGGCCCCAGATTCCCCAGGACTGGGTGTTACAGGAAGTAGTTGTAGAGTaGAAGGATGTTGGGATGTTT +
Preference number: 5 (lower is better)
Translates to: LVSAEARRPQIPQDWVLQEVVVE*KDVGMF
Trigger: AAACATCCCAACATCCTTCAACTCTACAACTACTTC...CTGTAACACCCAGTCCTGGGGAATCTGGGGCCTTCGAGCCTCTGCAGACACTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CAA 90 bp TCAGATCCCCTAGAACTGGAGCTAGGAATAGTTTCCAGTTCCCACCCCTTCTCAATAGTGAAAGGCTGCTaGTTCTGGGATCCTTGCGAG +
Preference number: 5 (lower is better)
Translates to: SDPLELELGIVSSSHPFSIVKGC*FWDPCE
Trigger: CTCGCAAGGATCCCAGAACAAGCAGCCTTTCACTAT...TGAGAAGGGGTGGGAACTGGAAACTATTCCTAGCTCCAGTTCTAGGGGATCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS-3UTR CAA 90 bp AGAGAGATCAGATCCCCTAGAACTGGAGCTAGGAATAGTTTCCAGTTCCCACCCGAAGTAGTTGTAGAGTaGAAGGATGTTGGGATGTTT +
Preference number: 5 (lower is better)
Translates to: REIRSPRTGARNSFQFPPEVVVE*KDVGMF
Trigger: AAACATCCCAACATCCTTCAACTCTACAACTACTTC...GGGTGGGAACTGGAAACTATTCCTAGCTCCAGTTCTAGGGGATCTGATCTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS TCA 72 bp TGTGGCAGTAGGTCAGGGCATCTGACAGTTCCTCCATaGTCGTGGCAGTCCGCTGCTCATCGAAGGTCCGAC +
Preference number: 6 (lower is better)
Translates to: CGSRSGHLTVPP*SWQSAAHRRSD
Trigger: GTCGGACCTTCGATGAGCAGCGGACTGCCACGATCATGGAGGAACTGTCAGATGCCCTGACCTACTGCCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS CCA 72 bp TTCTCAGCCAACTTCTGGCCAGGGGCAGCTGTGGACTaGCTGTTGAACCGGTTCACGAGAGCAAGCGCAGAT +
Preference number: 6 (lower is better)
Translates to: FSANFWPGAAVD*LLNRFTRASAD
Trigger: ATCTGCGCTTGCTCTCGTGAACCGGTTCAACAGCCAGTCCACAGCTGCCCCTGGCCAGAAGTTGGCTGAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS CCA 72 bp AGGTCCACCTTGACAATCCGACGATACGTCTCACTGTaGCTAGGGCTCTCGAAGGGTGGGTTCCCCACCATC +
Preference number: 6 (lower is better)
Translates to: RSTLTIRRYVSL*LGLSKGGFPTI
Trigger: GATGGTGGGGAACCCACCCTTCGAGAGCCCTAGCCACAGTGAGACGTATCGTCGGATTGTCAAGGTGGACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS CAA 72 bp TCTGGGACAACGTGTTCAGGCCAGACTGAGACGTCTTaGAGCCGTAGGGCCACGGGTAGGCGTTCTCCTTCT +
Preference number: 6 (lower is better)
Translates to: SGTTCSGQTETS*SRRATGRRSPS
Trigger: AGAAGGAGAACGCCTACCCGTGGCCCTACGGCTCAAAGACGTCTCAGTCTGGCCTGAACACGTTGTCCCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS GCA 72 bp GCATCTGACAGTTCCTCCATGATCGTGGCAGTCCGCTaGTCATCGAAGGTCCGACTCTTCTGCAGTTCCTTG +
Preference number: 6 (lower is better)
Translates to: ASDSSSMIVAVR*SSKVRLFCSSL
Trigger: CAAGGAACTGCAGAAGAGTCGGACCTTCGATGAGCAGCGGACTGCCACGATCATGGAGGAACTGTCAGATGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS GCA 72 bp GGACGCCCAATCTCAAAGTTGTCAATAGTGAAAGGCTaGTTGTTCTGGGATCCTTGCGAGGCAGTGGAGCCC +
Preference number: 6 (lower is better)
Translates to: GRPISKLSIVKG*LFWDPCEAVEP
Trigger: GGGCTCCACTGCCTCGCAAGGATCCCAGAACAAGCAGCCTTTCACTATTGACAACTTTGAGATTGGGCGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS CAA 72 bp GTTGTCAATAGTGAAAGGCTGCTTGTTCTGGGATCCTaGCGAGGCAGTGGAGCCCTGACTCTTGTTCTCAGC +
Preference number: 6 (lower is better)
Translates to: VVNSERLLVLGS*RGSGALTLVLS
Trigger: GCTGAGAACAAGAGTCAGGGCTCCACTGCCTCGCAAGGATCCCAGAACAAGCAGCCTTTCACTATTGACAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS CAA 90 bp AATCTCAAAGTTGTCAATAGTGAAAGGCTGCTTGTTCTGGGATCCTaGCGAGGCAGTGGAGCCCTGACTCTTGTTCTCAGCCAACTTCTG +
Preference number: 6 (lower is better)
Translates to: NLKVVNSERLLVLGS*RGSGALTLVLSQLL
Trigger: CAGAAGTTGGCTGAGAACAAGAGTCAGGGCTCCACTGCCTCGCAAGGATCCCAGAACAAGCAGCCTTTCACTATTGACAACTTTGAGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS CAA 90 bp ACGTTTCCAAATTTGCCTTTGCCCAAAGGACGCCCAATCTCAAAGTaGTCAATAGTGAAAGGCTGCTTGTTCTGGGATCCTTGCGAGGCA +
Preference number: 6 (lower is better)
Translates to: TFPNLPLPKGRPISK*SIVKGCLFWDPCEA
Trigger: TGCCTCGCAAGGATCCCAGAACAAGCAGCCTTTCACTATTGACAACTTTGAGATTGGGCGTCCTTTGGGCAAAGGCAAATTTGGAAACGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8
CDS CAA 72 bp AATTTGCCTTTGCCCAAAGGACGCCCAATCTCAAAGTaGTCAATAGTGAAAGGCTGCTTGTTCTGGGATCCT +
Preference number: 6 (lower is better)
Translates to: NLPLPKGRPISK*SIVKGCLFWDP
Trigger: AGGATCCCAGAACAAGCAGCCTTTCACTATTGACAACTTTGAGATTGGGCGTCCTTTGGGCAAAGGCAAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021277.6
ENSMUST00000108666.8