RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AURKAIP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000065990

Ensembl transcript IDs: ENSMUST00000084097.12, ENSMUST00000105591.2, ENSMUST00000105592.8, ENSMUST00000139651.8

Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp CTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGACAGGGGAGGCAGCCCGACTTaGGCTTGCAGGCTGCAAACT +
Preference number: 4 (lower is better)
Translates to: LPIFIIVGQKQQESQRDRGGSPT*ACRLQT
Trigger: AGTTTGCAGCCTGCAAGCCCAAGTCGGGCTGCCTCC...CCTGTCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR TCA 90 bp CTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGACAGGGAACTCCTCAAGCTCTaGCTGGGTCCTCTTACCAGG +
Preference number: 4 (lower is better)
Translates to: LPIFIIVGQKQQESQRDRELLKL*LGPLTR
Trigger: CCTGGTAAGAGGACCCAGTCAGAGCTTGAGGAGTTC...CCTGTCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR TCA 90 bp CCTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGACAGGAACTCCTCAAGCTCTaGCTGGGTCCTCTTACCAGG +
Preference number: 4 (lower is better)
Translates to: PSNIYYSGSEAAREPEGQELLKL*LGPLTR
Trigger: CCTGGTAAGAGGACCCAGTCAGAGCTTGAGGAGTTC...CTGTCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR TCA 90 bp CTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGACAGGAGCTCTCTAGAGGACTaGTGGCCATCTTCCTGGGGA +
Preference number: 4 (lower is better)
Translates to: LPIFIIVGQKQQESQRDRSSLED*WPSSWG
Trigger: TCCCCAGGAAGATGGCCATCAGTCCTCTAGAGAGCT...CCTGTCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR GCA 90 bp CTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGACAGGGGCTTCCTTCAGGCCTaGCTTAAGCCAGATGCGCTT +
Preference number: 4 (lower is better)
Translates to: LPIFIIVGQKQQESQRDRGFLQA*LKPDAL
Trigger: AAGCGCATCTGGCTTAAGGCAGGCCTGAAGGAAGCC...CCTGTCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR CCA 90 bp TTGAGTCCTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGAGGCAGCCCGACTTaGGCTTGCAGGCTGCAAACT +
Preference number: 4 (lower is better)
Translates to: LSPSNIYYSGSEAAREPEGGSPT*ACRLQT
Trigger: AGTTTGCAGCCTGCAAGCCCAAGTCGGGCTGCCTCC...CTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAGGACTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR CCA 90 bp CTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGACAGGTCCTCAAGCTCTGACTaGGTCCTCTTACCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: LPIFIIVGQKQQESQRDRSSSSD*VLLPGR
Trigger: CCTCCCTGGTAAGAGGACCCAGTCAGAGCTTGAGGA...CCTGTCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR TCA 90 bp AGTCCTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGAAGCTCTCTAGAGGACTaGTGGCCATCTTCCTGGGGA +
Preference number: 4 (lower is better)
Translates to: SPSNIYYSGSEAAREPEGSSLED*WPSSWG
Trigger: TCCCCAGGAAGATGGCCATCAGTCCTCTAGAGAGCT...TCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR GCA 90 bp CTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGACAGGAGCCCGACTTGGGCTTaGAGGCTGCAAACTGTAAAG +
Preference number: 4 (lower is better)
Translates to: LPIFIIVGQKQQESQRDRSPTWA*RLQTVK
Trigger: CTTTACAGTTTGCAGCCTGCAAGCCCAAGTCGGGCT...CCTGTCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR GCA 90 bp AGTCCTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGAGGCTTCCTTCAGGCCTaGCTTAAGCCAGATGCGCTT +
Preference number: 4 (lower is better)
Translates to: SPSNIYYSGSEAAREPEGGFLQA*LKPDAL
Trigger: AAGCGCATCTGGCTTAAGGCAGGCCTGAAGGAAGCC...TCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAGGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR CCA 90 bp AGTCCTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGATCCTCAAGCTCTGACTaGGTCCTCTTACCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: SPSNIYYSGSEAAREPEGSSSSD*VLLPGR
Trigger: CCTCCCTGGTAAGAGGACCCAGTCAGAGCTTGAGGA...TCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAGGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR CCA 90 bp CTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGACAGGGTTTTTGCACTGCACTaGAGTGGCATCCCAGGCTTC +
Preference number: 4 (lower is better)
Translates to: LPIFIIVGQKQQESQRDRVFALH*SGIPGF
Trigger: GAAGCCTGGGATGCCACTCCAGTGCAGTGCAAAAAC...CCTGTCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR GCA 90 bp AGTCCTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGAGGAACGACTGAAACCTaGCCAGGGAACAACAGTCCT +
Preference number: 4 (lower is better)
Translates to: SPSNIYYSGSEAAREPEGGTTET*PGNNSP
Trigger: AGGACTGTTGTTCCCTGGGCAGGTTTCAGTCGTTCC...TCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAGGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR GCA 90 bp AGTCCTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGAAGCCCGACTTGGGCTTaGAGGCTGCAAACTGTAAAG +
Preference number: 4 (lower is better)
Translates to: SPSNIYYSGSEAAREPEGSPTWA*RLQTVK
Trigger: CTTTACAGTTTGCAGCCTGCAAGCCCAAGTCGGGCT...TCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAGGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR GCA 90 bp CCTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGACAGTCTTCAGCACGTTTTTaGACTGCACTGGAGTGGCAT +
Preference number: 4 (lower is better)
Translates to: PSNIYYSGSEAAREPEGQSSARF*TALEWH
Trigger: ATGCCACTCCAGTGCAGTGCAAAAACGTGCTGAAGA...CTGTCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR GCA 90 bp CTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGACAGGTCTTCAGCACGTTTTTaGACTGCACTGGAGTGGCAT +
Preference number: 4 (lower is better)
Translates to: LPIFIIVGQKQQESQRDRSSARF*TALEWH
Trigger: ATGCCACTCCAGTGCAGTGCAAAAACGTGCTGAAGA...CCTGTCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR CCA 90 bp CTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGACAGGTTACGGTACTTGTGGTaGTTCATCTTTCGCCTTCGG +
Preference number: 4 (lower is better)
Translates to: LPIFIIVGQKQQESQRDRLRYLW*FIFRLR
Trigger: CCGAAGGCGAAAGATGAACCACCACAAGTACCGTAA...CCTGTCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR TCA 90 bp TTGAGTCCTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGCTGGGCAATAAGTATTaGGCAGTCAGCCAGCTCTCT +
Preference number: 4 (lower is better)
Translates to: LSPSNIYYSGSEAAREPELGNKY*AVSQLS
Trigger: AGAGAGCTGGCTGACTGCTCAATACTTATTGCCCAG...CTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAGGACTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR CCA 90 bp TTGAGTCCTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGTTACGGTACTTGTGGTaGTTCATCTTTCGCCTTCGG +
Preference number: 4 (lower is better)
Translates to: LSPSNIYYSGSEAAREPELRYLW*FIFRLR
Trigger: CCGAAGGCGAAAGATGAACCACCACAAGTACCGTAA...CTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAGGACTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR GCA 90 bp CCTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGACAGTTCTCAAATTTGATCTaGTTCTTCTTCAAACGTCCT +
Preference number: 4 (lower is better)
Translates to: PSNIYYSGSEAAREPEGQFSNLI*FFFKRP
Trigger: AGGACGTTTGAAGAAGAAGCAGATCAAATTTGAGAA...CTGTCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR GCA 90 bp TTGAGTCCTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGTTCTCAAATTTGATCTaGTTCTTCTTCAAACGTCCT +
Preference number: 4 (lower is better)
Translates to: LSPSNIYYSGSEAAREPEFSNLI*FFFKRP
Trigger: AGGACGTTTGAAGAAGAAGCAGATCAAATTTGAGAA...CTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAGGACTCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS GCA 90 bp CCTGCCTTAAGCCAGATGCGCTTCAAGTCTTTCTCAAATTTGATCTaGTTCTTCTTCAAACGTCCTTCCCGGACCTTGCGACGTAGAAAC +
Preference number: 5 (lower is better)
Translates to: PALSQMRFKSFSNLI*FFFKRPSRTLRRRN
Trigger: GTTTCTACGTCGCAAGGTCCGGGAAGGACGTTTGAAGAAGAAGCAGATCAAATTTGAGAAAGACTTGAAGCGCATCTGGCTTAAGGCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084097.12
ENSMUST00000105591.2
ENSMUST00000105592.8
CDS-3UTR CAA 90 bp CCTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGGGACAGATCTTCAGCACGTTTTaGCACTGCACTGGAGTGGCA +
Preference number: 5 (lower is better)
Translates to: PSNIYYSGSEAAREPEGQIFSTF*HCTGVA
Trigger: TGCCACTCCAGTGCAGTGCAAAAACGTGCTGAAGAT...CTGTCCCTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS-3UTR CAA 90 bp TTGAGTCCTTCCAATATTTATTATAGTGGGTCAGAAGCAGCAAGAGAGCCAGAGATCTTCAGCACGTTTTaGCACTGCACTGGAGTGGCA +
Preference number: 5 (lower is better)
Translates to: LSPSNIYYSGSEAAREPEIFSTF*HCTGVA
Trigger: TGCCACTCCAGTGCAGTGCAAAAACGTGCTGAAGAT...CTCTGGCTCTCTTGCTGCTTCTGACCCACTATAATAAATATTGGAAGGACTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084097.12
ENSMUST00000105592.8
CDS TCA 72 bp AGCTGCCAATCACCCCGGAGCCAGGGCAGGAACGACTaGAACCTGCCCAGGGAACAACAGTCCTGGCCAGCC +
Preference number: 6 (lower is better)
Translates to: SCQSPRSQGRND*NLPREQQSWPA
Trigger: GGCTGGCCAGGACTGTTGTTCCCTGGGCAGGTTTCAGTCGTTCCTGCCCTGGCTCCGGGGTGATTGGCAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084097.12
ENSMUST00000105591.2
ENSMUST00000105592.8
ENSMUST00000139651.8
CDS CCA 72 bp CTGGGTCCTCTTACCAGGGAGGGAGGCAGCCCGACTTaGGCTTGCAGGCTGCAAACTGTAAAGGGGTCGAAA +
Preference number: 6 (lower is better)
Translates to: LGPLTREGGSPT*ACRLQTVKGSK
Trigger: TTTCGACCCCTTTACAGTTTGCAGCCTGCAAGCCCAAGTCGGGCTGCCTCCCTCCCTGGTAAGAGGACCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084097.12
ENSMUST00000105591.2
ENSMUST00000105592.8
ENSMUST00000139651.8
CDS CAA 72 bp ACTGGGTCCTCTTACCAGGGAGGGAGGCAGCCCGACTaGGGCTTGCAGGCTGCAAACTGTAAAGGGGTCGAA +
Preference number: 6 (lower is better)
Translates to: TGSSYQGGRQPD*GLQAANCKGVE
Trigger: TTCGACCCCTTTACAGTTTGCAGCCTGCAAGCCCAAGTCGGGCTGCCTCCCTCCCTGGTAAGAGGACCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084097.12
ENSMUST00000105591.2
ENSMUST00000105592.8
ENSMUST00000139651.8
CDS CAA 90 bp CTGACTGGGTCCTCTTACCAGGGAGGGAGGCAGCCCGACTTGGGCTaGCAGGCTGCAAACTGTAAAGGGGTCGAAAAGCATAGCTGCCAA +
Preference number: 6 (lower is better)
Translates to: LTGSSYQGGRQPDLG*QAANCKGVEKHSCQ
Trigger: TTGGCAGCTATGCTTTTCGACCCCTTTACAGTTTGCAGCCTGCAAGCCCAAGTCGGGCTGCCTCCCTCCCTGGTAAGAGGACCCAGTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084097.12
ENSMUST00000105591.2
ENSMUST00000105592.8
ENSMUST00000139651.8
CDS CAA 90 bp CAAGCTCTGACTGGGTCCTCTTACCAGGGAGGGAGGCAGCCCGACTaGGGCTTGCAGGCTGCAAACTGTAAAGGGGTCGAAAAGCATAGC +
Preference number: 6 (lower is better)
Translates to: QALTGSSYQGGRQPD*GLQAANCKGVEKHS
Trigger: GCTATGCTTTTCGACCCCTTTACAGTTTGCAGCCTGCAAGCCCAAGTCGGGCTGCCTCCCTCCCTGGTAAGAGGACCCAGTCAGAGCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084097.12
ENSMUST00000105591.2
ENSMUST00000105592.8
ENSMUST00000139651.8
CDS GCA 72 bp CCTCTTACCAGGGAGGGAGGCAGCCCGACTTGGGCTTaGAGGCTGCAAACTGTAAAGGGGTCGAAAAGCATA +
Preference number: 6 (lower is better)
Translates to: PLTREGGSPTWA*RLQTVKGSKSI
Trigger: TATGCTTTTCGACCCCTTTACAGTTTGCAGCCTGCAAGCCCAAGTCGGGCTGCCTCCCTCCCTGGTAAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084097.12
ENSMUST00000105591.2
ENSMUST00000105592.8
ENSMUST00000139651.8
CDS CAA 72 bp TCCTCTTACCAGGGAGGGAGGCAGCCCGACTTGGGCTaGCAGGCTGCAAACTGTAAAGGGGTCGAAAAGCAT +
Preference number: 6 (lower is better)
Translates to: SSYQGGRQPDLG*QAANCKGVEKH
Trigger: ATGCTTTTCGACCCCTTTACAGTTTGCAGCCTGCAAGCCCAAGTCGGGCTGCCTCCCTCCCTGGTAAGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084097.12
ENSMUST00000105591.2
ENSMUST00000105592.8
ENSMUST00000139651.8
CDS CAA 90 bp TTCAGGCCTGCCTTAAGCCAGATGCGCTTCAAGTCTTTCTCAAATTaGATCTGCTTCTTCTTCAAACGTCCTTCCCGGACCTTGCGACGT +
Preference number: 6 (lower is better)
Translates to: FRPALSQMRFKSFSN*ICFFFKRPSRTLRR
Trigger: ACGTCGCAAGGTCCGGGAAGGACGTTTGAAGAAGAAGCAGATCAAATTTGAGAAAGACTTGAAGCGCATCTGGCTTAAGGCAGGCCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084097.12
ENSMUST00000105591.2
ENSMUST00000105592.8