Pregenerated sensors for AURKA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027496Ensembl transcript IDs: ENSMUST00000028997.8, ENSMUST00000109139.8, ENSMUST00000109140.10
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TTTAAAAGATTACATACCCATTCCAACAGTTTCCCTAGGCCTGGTGACCCAATATGGCCAAGGACTAGTTaGTCAGCAAGGCACCCTGAG | + |
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Preference number: 2 (lower is better) Translates to: FKRLHTHSNSFPRPGDPIWPRTS*SARHPE Trigger: CTCAGGGTGCCTTGCTGAGCAACTAGTCCTTGGCCA...TATTGGGTCACCAGGCCTAGGGAAACTGTTGGAATGGGTATGTAATCTTTTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| 3UTR-3UTR TCA 90 bp | TGGAAACAAGACCCTGAATGGGTGTCACTTAAAAGTCAAAGTCTATGCAAATCTAGGCTACGACACAGGTaGTCTCTGGTAAGTTTCCCA | + |
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Preference number: 2 (lower is better) Translates to: WKQDPEWVSLKSQSLCKSRLRHR*SLVSFP Trigger: TGGGAAACTTACCAGAGATCACCTGTGTCGTAGCCT...AGATTTGCATAGACTTTGACTTTTAAGTGACACCCATTCAGGGTCTTGTTTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| 3UTR-3UTR CCA 90 bp | TGGAAACAAGACCCTGAATGGGTGTCACTTAAAAGTCAAAGTCTATGCAAATCTGTTCTTGGGGTTTCCTaGATGCATGGCCAAGGACTA | + |
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Preference number: 2 (lower is better) Translates to: WKQDPEWVSLKSQSLCKSVLGVS*MHGQGL Trigger: TAGTCCTTGGCCATGCATCCAGGAAACCCCAAGAAC...AGATTTGCATAGACTTTGACTTTTAAGTGACACCCATTCAGGGTCTTGTTTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| 3UTR CCA 72 bp | GAAAAGCAGCATGGTTCTTGGGGTTTCCTGGATGCATaGCCAAGGACTAGTTGCTCAGCAAGGCACCCTGAG | + |
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Preference number: 3 (lower is better) Translates to: EKQHGSWGFLDA*PRTSCSARHPE Trigger: CTCAGGGTGCCTTGCTGAGCAACTAGTCCTTGGCCATGCATCCAGGAAACCCCAAGAACCATGCTGCTTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| 3UTR CCA 72 bp | GCACGGGCTTCAGACGACTGGAAACAAGACCCTGAATaGGTGTCACTTAAAAGTCAAAGTCTATGCAAATCT | + |
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Preference number: 3 (lower is better) Translates to: ARASDDWKQDPE*VSLKSQSLCKS Trigger: AGATTTGCATAGACTTTGACTTTTAAGTGACACCCATTCAGGGTCTTGTTTCCAGTCGTCTGAAGCCCGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR TCA 90 bp | AGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGTGGCCGAATAGCCATACAGCCTaGGGATGTTGGGGTGCCGCA | + |
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Preference number: 4 (lower is better) Translates to: RVQEGGFNRVFLTVARWPNSHTA*GCWGAA Trigger: TGCGGCACCCCAACATCCTCAGGCTGTATGGCTATT...CGGCCACCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CCA 90 bp | GCCATGAGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGGGTTCTCCTGGAAGATaGAGCATGCACCGACCACCC | + |
|
Preference number: 4 (lower is better) Translates to: AMRVQEGGFNRVFLTVARGSPGR*SMHRPP Trigger: GGGTGGTCGGTGCATGCTCCATCTTCCAGGAGAACC...CCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCTCATGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CCA 90 bp | GCCATGAGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGCCTGCTCCAAGTTTCTaGGCTTGTGAAGGGACACGC | + |
|
Preference number: 4 (lower is better) Translates to: AMRVQEGGFNRVFLTVARPAPSF*ACEGTR Trigger: GCGTGTCCCTTCACAAGCCCAGAAACTTGGAGCAGG...CCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCTCATGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR TCA 90 bp | GCCATGAGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGCCTTCAGAGCCAGGATaGACTTGCTTTGTCTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: AMRVQEGGFNRVFLTVARPSEPG*TCFVSP Trigger: GGGAGAGACAAAGCAAGTTCATCCTGGCTCTGAAGG...CCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCTCATGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | AGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGTGGCCGATCATTTCCGGAGGCTaGAGGCTGCTCATTCTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: RVQEGGFNRVFLTVARWPIISGG*RLLILL Trigger: CAGAAGAATGAGCAGCCTGCAGCCTCCGGAAATGAT...CGGCCACCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | AGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGTGGCCGGTGTCTTCGGTCTTCTaGAAGGATGCCTGCTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: RVQEGGFNRVFLTVARWPVSSVF*KDACSF Trigger: AAAGGAGCAGGCATCCTTGCAGAAGACCGAAGACAC...CGGCCACCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | GCCATGAGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGATCATTTCCGGAGGCTaGAGGCTGCTCATTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: AMRVQEGGFNRVFLTVARIISGG*RLLILL Trigger: CAGAAGAATGAGCAGCCTGCAGCCTCCGGAAATGAT...CCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCTCATGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | AGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGTGGCCGGGTCTTCTGCAAGGATaGCTGCTCCTTTTCAGAATC | + |
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Preference number: 4 (lower is better) Translates to: RVQEGGFNRVFLTVARWPGLLQG*LLLFRI Trigger: GATTCTGAAAAGGAGCAGGCATCCTTGCAGAAGACC...CGGCCACCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CCA 90 bp | ATCCCGCACGGGCTTCAGACGACTGGAAACAAGACCCTGAATGGGTGTCACTTACCTGCTCCAAGTTTCTaGGCTTGTGAAGGGACACGC | + |
|
Preference number: 4 (lower is better) Translates to: IPHGLQTTGNKTLNGCHLPAPSF*ACEGTR Trigger: GCGTGTCCCTTCACAAGCCCAGAAACTTGGAGCAGG...TAAGTGACACCCATTCAGGGTCTTGTTTCCAGTCGTCTGAAGCCCGTGCGGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | GCCATGAGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGGGTCTTCTGCAAGGATaGCTGCTCCTTTTCAGAATC | + |
|
Preference number: 4 (lower is better) Translates to: AMRVQEGGFNRVFLTVARGLLQG*LLLFRI Trigger: GATTCTGAAAAGGAGCAGGCATCCTTGCAGAAGACC...CCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCTCATGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | AGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGTGGCCGGTAAGACAGAGCGTTTaGCAACTCAGTGATGTAAGT | + |
|
Preference number: 4 (lower is better) Translates to: RVQEGGFNRVFLTVARWPVRQSV*QLSDVS Trigger: ACTTACATCACTGAGTTGGCAAACGCTCTGTCTTAC...CGGCCACCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CCA 90 bp | GCCATGAGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGTCTGCTCGTCAAACTTaGAGAGTTTTTGGAGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: AMRVQEGGFNRVFLTVARSARQT*RVFGAL Trigger: GAGAGCTCCAAAAACTCTCCAAGTTTGACGAGCAGA...CCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCTCATGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CCA 90 bp | ATCCCGCACGGGCTTCAGACGACTGGAAACAAGACCCTGAATGGGTGTCACTTAACATTGTGGTTCTCCTaGAAGATGGAGCATGCACCG | + |
|
Preference number: 4 (lower is better) Translates to: IPHGLQTTGNKTLNGCHLTLWFS*KMEHAP Trigger: CGGTGCATGCTCCATCTTCCAGGAGAACCACAATGT...TAAGTGACACCCATTCAGGGTCTTGTTTCCAGTCGTCTGAAGCCCGTGCGGGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | AGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGTGGCCGTTCTGCAAGGATGCCTaGTCCTTTTCAGAATCATTT | + |
|
Preference number: 4 (lower is better) Translates to: RVQEGGFNRVFLTVARWPFCKDA*SFSESF Trigger: AAATGATTCTGAAAAGGAGCAGGCATCCTTGCAGAA...CGGCCACCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CCA 90 bp | ACTAAATCAGGAAAAGCAGCATGGTTCTTGGGGTTTCCTGGATGCATGGCCAAGGGCTGCTCATTCTTCTaGGGGTTATTGAGCCGGGAC | + |
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Preference number: 4 (lower is better) Translates to: TKSGKAAWFLGFPGCMAKGCSFF*GLLSRD Trigger: GTCCCGGCTCAATAACCCCCAGAAGAATGAGCAGCC...CTTGGCCATGCATCCAGGAAACCCCAAGAACCATGCTGCTTTTCCTGATTTAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR TCA 90 bp | ACTAAATCAGGAAAAGCAGCATGGTTCTTGGGGTTTCCTGGATGCATGGCCAAGCCTTCAGAGCCAGGATaGACTTGCTTTGTCTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: TKSGKAAWFLGFPGCMAKPSEPG*TCFVSP Trigger: GGGAGAGACAAAGCAAGTTCATCCTGGCTCTGAAGG...CTTGGCCATGCATCCAGGAAACCCCAAGAACCATGCTGCTTTTCCTGATTTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | CATTTAAAAGATTACATACCCATTCCAACAGTTTCCCTAGGCCTGGTGACCCAACTGAGGATGTTGGGGTaGCGCAGGTGCGACTGGATC | + |
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Preference number: 4 (lower is better) Translates to: HLKDYIPIPTVSLGLVTQLRMLG*RRCDWI Trigger: GATCCAGTCGCACCTGCGGCACCCCAACATCCTCAG...TTGGGTCACCAGGCCTAGGGAAACTGTTGGAATGGGTATGTAATCTTTTAAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CCA 90 bp | CATTTAAAAGATTACATACCCATTCCAACAGTTTCCCTAGGCCTGGTGACCCAAGGTTCTCCTGGAAGATaGAGCATGCACCGACCACCC | + |
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Preference number: 4 (lower is better) Translates to: HLKDYIPIPTVSLGLVTQGSPGR*SMHRPP Trigger: GGGTGGTCGGTGCATGCTCCATCTTCCAGGAGAACC...TTGGGTCACCAGGCCTAGGGAAACTGTTGGAATGGGTATGTAATCTTTTAAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | ATCCCGCACGGGCTTCAGACGACTGGAAACAAGACCCTGAATGGGTGTCACTTATTCTGCAAGGATGCCTaGTCCTTTTCAGAATCATTT | + |
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Preference number: 4 (lower is better) Translates to: IPHGLQTTGNKTLNGCHLFCKDA*SFSESF Trigger: AAATGATTCTGAAAAGGAGCAGGCATCCTTGCAGAA...TAAGTGACACCCATTCAGGGTCTTGTTTCCAGTCGTCTGAAGCCCGTGCGGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | ACTAAATCAGGAAAAGCAGCATGGTTCTTGGGGTTTCCTGGATGCATGGCCAAGGGTCTTCTGCAAGGATaGCTGCTCCTTTTCAGAATC | + |
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Preference number: 4 (lower is better) Translates to: TKSGKAAWFLGFPGCMAKGLLQG*LLLFRI Trigger: GATTCTGAAAAGGAGCAGGCATCCTTGCAGAAGACC...CTTGGCCATGCATCCAGGAAACCCCAAGAACCATGCTGCTTTTCCTGATTTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | TGGAAACAAGACCCTGAATGGGTGTCACTTAAAAGTCAAAGTCTATGCAAATCTCTGAGGATGTTGGGGTaGCGCAGGTGCGACTGGATC | + |
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Preference number: 4 (lower is better) Translates to: WKQDPEWVSLKSQSLCKSLRMLG*RRCDWI Trigger: GATCCAGTCGCACCTGCGGCACCCCAACATCCTCAG...AGATTTGCATAGACTTTGACTTTTAAGTGACACCCATTCAGGGTCTTGTTTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CCA 90 bp | CATTTAAAAGATTACATACCCATTCCAACAGTTTCCCTAGGCCTGGTGACCCAACCTGCTCCAAGTTTCTaGGCTTGTGAAGGGACACGC | + |
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Preference number: 4 (lower is better) Translates to: HLKDYIPIPTVSLGLVTQPAPSF*ACEGTR Trigger: GCGTGTCCCTTCACAAGCCCAGAAACTTGGAGCAGG...TTGGGTCACCAGGCCTAGGGAAACTGTTGGAATGGGTATGTAATCTTTTAAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CCA 90 bp | CATTTAAAAGATTACATACCCATTCCAACAGTTTCCCTAGGCCTGGTGACCCAAGGCTGCTCATTCTTCTaGGGGTTATTGAGCCGGGAC | + |
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Preference number: 4 (lower is better) Translates to: HLKDYIPIPTVSLGLVTQGCSFF*GLLSRD Trigger: GTCCCGGCTCAATAACCCCCAGAAGAATGAGCAGCC...TTGGGTCACCAGGCCTAGGGAAACTGTTGGAATGGGTATGTAATCTTTTAAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CCA 90 bp | TTTAAAAGATTACATACCCATTCCAACAGTTTCCCTAGGCCTGGTGACCCAATAGGTTCTCCTGGAAGATaGAGCATGCACCGACCACCC | + |
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Preference number: 4 (lower is better) Translates to: FKRLHTHSNSFPRPGDPIGSPGR*SMHRPP Trigger: GGGTGGTCGGTGCATGCTCCATCTTCCAGGAGAACC...TATTGGGTCACCAGGCCTAGGGAAACTGTTGGAATGGGTATGTAATCTTTTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR TCA 90 bp | ACTAAATCAGGAAAAGCAGCATGGTTCTTGGGGTTTCCTGGATGCATGGCCAAGGTGGATCACTCTCTTTaGATGACAGTAAGACAGAGC | + |
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Preference number: 4 (lower is better) Translates to: TKSGKAAWFLGFPGCMAKVDHSL*MTVRQS Trigger: GCTCTGTCTTACTGTCATTCAAAGAGAGTGATCCAC...CTTGGCCATGCATCCAGGAAACCCCAAGAACCATGCTGCTTTTCCTGATTTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR TCA 90 bp | ACTAAATCAGGAAAAGCAGCATGGTTCTTGGGGTTTCCTGGATGCATGGCCAAGCAAAGTCAGGGAAAGTaGATTCAACCCGAGATATCC | + |
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Preference number: 4 (lower is better) Translates to: TKSGKAAWFLGFPGCMAKQSQGK*IQPEIS Trigger: GGATATCTCGGGTTGAATTCACTTTCCCTGACTTTG...CTTGGCCATGCATCCAGGAAACCCCAAGAACCATGCTGCTTTTCCTGATTTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR TCA 90 bp | TTTAAAAGATTACATACCCATTCCAACAGTTTCCCTAGGCCTGGTGACCCAATACCTTCAGAGCCAGGATaGACTTGCTTTGTCTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: FKRLHTHSNSFPRPGDPIPSEPG*TCFVSP Trigger: GGGAGAGACAAAGCAAGTTCATCCTGGCTCTGAAGG...TATTGGGTCACCAGGCCTAGGGAAACTGTTGGAATGGGTATGTAATCTTTTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | CATTTAAAAGATTACATACCCATTCCAACAGTTTCCCTAGGCCTGGTGACCCAAGTGTCTTCGGTCTTCTaGAAGGATGCCTGCTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: HLKDYIPIPTVSLGLVTQVSSVF*KDACSF Trigger: AAAGGAGCAGGCATCCTTGCAGAAGACCGAAGACAC...TTGGGTCACCAGGCCTAGGGAAACTGTTGGAATGGGTATGTAATCTTTTAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR TCA 90 bp | CAAGACCCTGAATGGGTGTCACTTAAAAGTCAAAGTCTATGCAAATCTTTATTTAATAGCCATACAGCCTaGGGATGTTGGGGTGCCGCA | + |
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Preference number: 4 (lower is better) Translates to: QDPEWVSLKSQSLCKSLFNSHTA*GCWGAA Trigger: TGCGGCACCCCAACATCCTCAGGCTGTATGGCTATT...AAATAAAGATTTGCATAGACTTTGACTTTTAAGTGACACCCATTCAGGGTCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | TGGAAACAAGACCCTGAATGGGTGTCACTTAAAAGTCAAAGTCTATGCAAATCTATCATTTCCGGAGGCTaGAGGCTGCTCATTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: WKQDPEWVSLKSQSLCKSIISGG*RLLILL Trigger: CAGAAGAATGAGCAGCCTGCAGCCTCCGGAAATGAT...AGATTTGCATAGACTTTGACTTTTAAGTGACACCCATTCAGGGTCTTGTTTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR TCA 90 bp | TTTAAAAGATTACATACCCATTCCAACAGTTTCCCTAGGCCTGGTGACCCAATACAAAGTCAGGGAAAGTaGATTCAACCCGAGATATCC | + |
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Preference number: 4 (lower is better) Translates to: FKRLHTHSNSFPRPGDPIQSQGK*IQPEIS Trigger: GGATATCTCGGGTTGAATTCACTTTCCCTGACTTTG...TATTGGGTCACCAGGCCTAGGGAAACTGTTGGAATGGGTATGTAATCTTTTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | CATTTAAAAGATTACATACCCATTCCAACAGTTTCCCTAGGCCTGGTGACCCAAGTAAGACAGAGCGTTTaGCAACTCAGTGATGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: HLKDYIPIPTVSLGLVTQVRQSV*QLSDVS Trigger: ACTTACATCACTGAGTTGGCAAACGCTCTGTCTTAC...TTGGGTCACCAGGCCTAGGGAAACTGTTGGAATGGGTATGTAATCTTTTAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CCA 90 bp | TTTAAAAGATTACATACCCATTCCAACAGTTTCCCTAGGCCTGGTGACCCAATATCTGCTCGTCAAACTTaGAGAGTTTTTGGAGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: FKRLHTHSNSFPRPGDPISARQT*RVFGAL Trigger: GAGAGCTCCAAAAACTCTCCAAGTTTGACGAGCAGA...TATTGGGTCACCAGGCCTAGGGAAACTGTTGGAATGGGTATGTAATCTTTTAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR TCA 90 bp | TGGAAACAAGACCCTGAATGGGTGTCACTTAAAAGTCAAAGTCTATGCAAATCTGTGGATCACTCTCTTTaGATGACAGTAAGACAGAGC | + |
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Preference number: 4 (lower is better) Translates to: WKQDPEWVSLKSQSLCKSVDHSL*MTVRQS Trigger: GCTCTGTCTTACTGTCATTCAAAGAGAGTGATCCAC...AGATTTGCATAGACTTTGACTTTTAAGTGACACCCATTCAGGGTCTTGTTTCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CCA 90 bp | CAAGACCCTGAATGGGTGTCACTTAAAAGTCAAAGTCTATGCAAATCTTTATTTACATTGTGGTTCTCCTaGAAGATGGAGCATGCACCG | + |
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Preference number: 4 (lower is better) Translates to: QDPEWVSLKSQSLCKSLFTLWFS*KMEHAP Trigger: CGGTGCATGCTCCATCTTCCAGGAGAACCACAATGT...AAATAAAGATTTGCATAGACTTTGACTTTTAAGTGACACCCATTCAGGGTCTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR TCA 90 bp | CAAGACCCTGAATGGGTGTCACTTAAAAGTCAAAGTCTATGCAAATCTTTATTTCAAAGTCAGGGAAAGTaGATTCAACCCGAGATATCC | + |
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Preference number: 4 (lower is better) Translates to: QDPEWVSLKSQSLCKSLFQSQGK*IQPEIS Trigger: GGATATCTCGGGTTGAATTCACTTTCCCTGACTTTG...AAATAAAGATTTGCATAGACTTTGACTTTTAAGTGACACCCATTCAGGGTCTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CCA 90 bp | CAAGACCCTGAATGGGTGTCACTTAAAAGTCAAAGTCTATGCAAATCTTTATTTTCTGCTCGTCAAACTTaGAGAGTTTTTGGAGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: QDPEWVSLKSQSLCKSLFSARQT*RVFGAL Trigger: GAGAGCTCCAAAAACTCTCCAAGTTTGACGAGCAGA...AAATAAAGATTTGCATAGACTTTGACTTTTAAGTGACACCCATTCAGGGTCTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR GCA 90 bp | CAAGACCCTGAATGGGTGTCACTTAAAAGTCAAAGTCTATGCAAATCTTTATTTGTAAGACAGAGCGTTTaGCAACTCAGTGATGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: QDPEWVSLKSQSLCKSLFVRQSV*QLSDVS Trigger: ACTTACATCACTGAGTTGGCAAACGCTCTGTCTTAC...AAATAAAGATTTGCATAGACTTTGACTTTTAAGTGACACCCATTCAGGGTCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS TCA 90 bp | GGCCTAGGAACACTGGCAGCTGGCAACTGCTTTGGTGCCGGCTTCTaGCCTGCTCCAAGTTTCTGGGCTTGTGAAGGGACACGCTGGGAG | + |
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Preference number: 5 (lower is better) Translates to: GLGTLAAGNCFGAGF*PAPSFWACEGTRWE Trigger: CTCCCAGCGTGTCCCTTCACAAGCCCAGAAACTTGGAGCAGGTCAGAAGCCGGCACCAAAGCAGTTGCCAGCTGCCAGTGTTCCTAGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CAA 90 bp | AGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGTGGCCGAGAGCCAGGATGAACTaGCTTTGTCTCTCCCGCGCC | + |
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Preference number: 5 (lower is better) Translates to: RVQEGGFNRVFLTVARWPRARMN*LCLSRA Trigger: GGCGCGGGAGAGACAAAGCAAGTTCATCCTGGCTCT...CGGCCACCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS GCA 90 bp | CTTCTGCAAGGATGCCTGCTCCTTTTCAGAATCATTTCCGGAGGCTaGAGGCTGCTCATTCTTCTGGGGGTTATTGAGCCGGGACACAGG | + |
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Preference number: 5 (lower is better) Translates to: LLQGCLLLFRIISGG*RLLILLGVIEPGHR Trigger: CCTGTGTCCCGGCTCAATAACCCCCAGAAGAATGAGCAGCCTGCAGCCTCCGGAAATGATTCTGAAAAGGAGCAGGCATCCTTGCAGAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CAA 90 bp | AGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGTGGCCGTTGGAAGAATTAGCTTaGATCCAAGGGTGCTCAAGG | + |
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Preference number: 5 (lower is better) Translates to: RVQEGGFNRVFLTVARWPLEELA*IQGCSR Trigger: CCTTGAGCACCCTTGGATCAAAGCTAATTCTTCCAA...CGGCCACCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CAA 90 bp | GCCATGAGGGTCCAGGAGGGTGGCTTCAATAGGGTGTTTCTCACAGTTGCACGGTGGCCAGTTGGAGGTTaGGAAGAATTAGCTTTGATC | + |
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Preference number: 5 (lower is better) Translates to: AMRVQEGGFNRVFLTVARWPVGG*EELALI Trigger: GATCAAAGCTAATTCTTCCAAACCTCCAACTGGCCA...CCGTGCAACTGTGAGAAACACCCTATTGAAGCCACCCTCCTGGACCCTCATGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CAA 90 bp | ATCCCGCACGGGCTTCAGACGACTGGAAACAAGACCCTGAATGGGTGTCACTTATTGGAAGAATTAGCTTaGATCCAAGGGTGCTCAAGG | + |
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Preference number: 5 (lower is better) Translates to: IPHGLQTTGNKTLNGCHLLEELA*IQGCSR Trigger: CCTTGAGCACCCTTGGATCAAAGCTAATTCTTCCAA...TAAGTGACACCCATTCAGGGTCTTGTTTCCAGTCGTCTGAAGCCCGTGCGGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CAA 90 bp | CATTTAAAAGATTACATACCCATTCCAACAGTTTCCCTAGGCCTGGTGACCCAAAGAGCCAGGATGAACTaGCTTTGTCTCTCCCGCGCC | + |
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Preference number: 5 (lower is better) Translates to: HLKDYIPIPTVSLGLVTQRARMN*LCLSRA Trigger: GGCGCGGGAGAGACAAAGCAAGTTCATCCTGGCTCT...TTGGGTCACCAGGCCTAGGGAAACTGTTGGAATGGGTATGTAATCTTTTAAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CAA 90 bp | TGGAAACAAGACCCTGAATGGGTGTCACTTAAAAGTCAAAGTCTATGCAAATCTAGAGCCAGGATGAACTaGCTTTGTCTCTCCCGCGCC | + |
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Preference number: 5 (lower is better) Translates to: WKQDPEWVSLKSQSLCKSRARMN*LCLSRA Trigger: GGCGCGGGAGAGACAAAGCAAGTTCATCCTGGCTCT...AGATTTGCATAGACTTTGACTTTTAAGTGACACCCATTCAGGGTCTTGTTTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CAA 90 bp | CATTTAAAAGATTACATACCCATTCCAACAGTTTCCCTAGGCCTGGTGACCCAATGGCCAGTTGGAGGTTaGGAAGAATTAGCTTTGATC | + |
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Preference number: 5 (lower is better) Translates to: HLKDYIPIPTVSLGLVTQWPVGG*EELALI Trigger: GATCAAAGCTAATTCTTCCAAACCTCCAACTGGCCA...TTGGGTCACCAGGCCTAGGGAAACTGTTGGAATGGGTATGTAATCTTTTAAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS-3UTR CAA 90 bp | CAAGACCCTGAATGGGTGTCACTTAAAAGTCAAAGTCTATGCAAATCTTTATTTTGGCCAGTTGGAGGTTaGGAAGAATTAGCTTTGATC | + |
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Preference number: 5 (lower is better) Translates to: QDPEWVSLKSQSLCKSLFWPVGG*EELALI Trigger: GATCAAAGCTAATTCTTCCAAACCTCCAACTGGCCA...AAATAAAGATTTGCATAGACTTTGACTTTTAAGTGACACCCATTCAGGGTCTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS CCA 72 bp | TACAGCCTGAGGATGTTGGGGTGCCGCAGGTGCGACTaGATCTCCACCTCTCTCCGAAGCTGGTGCTCCACG | + |
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Preference number: 6 (lower is better) Translates to: YSLRMLGCRRCD*ISTSLRSWCST Trigger: CGTGGAGCACCAGCTTCGGAGAGAGGTGGAGATCCAGTCGCACCTGCGGCACCCCAACATCCTCAGGCTGTA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS CCA 72 bp | CCTGCTCCAAGTTTCTGGGCTTGTGAAGGGACACGCTaGGAGTTAGAAGGACACAGGACCCGCTGGGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: PAPSFWACEGTR*ELEGHRTRWAW Trigger: CCAGGCCCAGCGGGTCCTGTGTCCTTCTAACTCCCAGCGTGTCCCTTCACAAGCCCAGAAACTTGGAGCAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS CAA 72 bp | CCGGAGGCTGCAGGCTGCTCATTCTTCTGGGGGTTATaGAGCCGGGACACAGGCCTAGGAACACTGGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: PEAAGCSFFWGL*SRDTGLGTLAA Trigger: AGCTGCCAGTGTTCCTAGGCCTGTGTCCCGGCTCAATAACCCCCAGAAGAATGAGCAGCCTGCAGCCTCCGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS CAA 90 bp | GAATCATTTCCGGAGGCTGCAGGCTGCTCATTCTTCTGGGGGTTATaGAGCCGGGACACAGGCCTAGGAACACTGGCAGCTGGCAACTGC | + |
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Preference number: 6 (lower is better) Translates to: ESFPEAAGCSFFWGL*SRDTGLGTLAAGNC Trigger: GCAGTTGCCAGCTGCCAGTGTTCCTAGGCCTGTGTCCCGGCTCAATAACCCCCAGAAGAATGAGCAGCCTGCAGCCTCCGGAAATGATTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS CCA 72 bp | GAATCATTTCCGGAGGCTGCAGGCTGCTCATTCTTCTaGGGGTTATTGAGCCGGGACACAGGCCTAGGAACA | + |
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Preference number: 6 (lower is better) Translates to: ESFPEAAGCSFF*GLLSRDTGLGT Trigger: TGTTCCTAGGCCTGTGTCCCGGCTCAATAACCCCCAGAAGAATGAGCAGCCTGCAGCCTCCGGAAATGATTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS CAA 72 bp | CTGGTTGGCTCTTTGCTAGTGTGGCCAGTTGGAGGTTaGGAAGAATTAGCTTTGATCCAAGGGTGCTCAAGG | + |
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Preference number: 6 (lower is better) Translates to: LVGSLLVWPVGG*EELALIQGCSR Trigger: CCTTGAGCACCCTTGGATCAAAGCTAATTCTTCCAAACCTCCAACTGGCCACACTAGCAAAGAGCCAACCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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| CDS CAA 72 bp | CTAGTGTGGCCAGTTGGAGGTTTGGAAGAATTAGCTTaGATCCAAGGGTGCTCAAGGACTTCCGCTAGTGTT | + |
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Preference number: 6 (lower is better) Translates to: LVWPVGGLEELA*IQGCSRTSASV Trigger: AACACTAGCGGAAGTCCTTGAGCACCCTTGGATCAAAGCTAATTCTTCCAAACCTCCAACTGGCCACACTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028997.8 ENSMUST00000109139.8 ENSMUST00000109140.10 |
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