Pregenerated sensors for AUP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068328Ensembl transcript IDs: ENSMUST00000092618.10, ENSMUST00000092618.9, ENSMUST00000203915.3, ENSMUST00000203915.4, ENSMUST00000204343.3, ENSMUST00000204343.4, ENSMUST00000204719.3, ENSMUST00000204719.4
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCTCTCCTGACGGGCCCAGGAAGACTTGGCAAACGTTAGGGCTGTaGGCTGAGGGGTCGCCAGGCCCGAGCTGGGGAACTGAGGTGATC | + |
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Preference number: 1 (lower is better) Translates to: GSPDGPRKTWQTLGL*AEGSPGPSWGTEVI Trigger: GATCACCTCAGTTCCCCAGCTCGGGCCTGGCGACCCCTCAGCCCACAGCCCTAACGTTTGCCAAGTCTTCCTGGGCCCGTCAGGAGAGCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203915.3 |
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| 3UTR CCA 90 bp | GCCCCCAGTCTCCGTCCTGCGGCTCTGGGTACCATCCTGTTCCTTTaGGCTCATTCAGCCTCCTGGGCCTGTCTCTCTCTGAATCTCCTT | + |
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Preference number: 1 (lower is better) Translates to: APSLRPAALGTILFL*AHSASWACLSLNLL Trigger: AAGGAGATTCAGAGAGAGACAGGCCCAGGAGGCTGAATGAGCCCAAAGGAACAGGATGGTACCCAGAGCCGCAGGACGGAGACTGGGGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR GCA 90 bp | CTGGGCCTGTCTCTCTCTGAATCTCCTTCTTGCATATTCATACAGTaGCTGCTTGCGCTCCTGCAGGCTCTCCTGACGGGCCCAGGAAGA | + |
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Preference number: 1 (lower is better) Translates to: LGLSLSESPSCIFIQ*LLALLQALLTGPGR Trigger: TCTTCCTGGGCCCGTCAGGAGAGCCTGCAGGAGCGCAAGCAGGCACTGTATGAATATGCAAGAAGGAGATTCAGAGAGAGACAGGCCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR CCA 90 bp | GTCTACACACCCAGTCCTGGCCAGGTCTCTCTGGATGACATTCAATaGCACATGGGGCAGAACCTCCTTGACTCTGTGAGCGAGAGTGGT | + |
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Preference number: 1 (lower is better) Translates to: VYTPSPGQVSLDDIQ*HMGQNLLDSVSESG Trigger: ACCACTCTCGCTCACAGAGTCAAGGAGGTTCTGCCCCATGTGCCATTGAATGTCATCCAGAGAGACCTGGCCAGGACTGGGTGTGTAGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR TCA 90 bp | TGGATGACATTCAATGGCACATGGGGCAGAACCTCCTTGACTCTGTaGGCGAGAGTGGTCAGCTGCACATCAGAAGAAGGGCTGGGAGGA | + |
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Preference number: 1 (lower is better) Translates to: WMTFNGTWGRTSLTL*ARVVSCTSEEGLGG Trigger: TCCTCCCAGCCCTTCTTCTGATGTGCAGCTGACCACTCTCGCTCACAGAGTCAAGGAGGTTCTGCCCCATGTGCCATTGAATGTCATCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR TCA 90 bp | TGGGGTGTCTTTGTCGCTTCATGTGTTCTGCTTTGTCTGCTGGAGTaGGCCGTGTCCCTATCTGGCCCAATTCTTTGGCCACCAGCTGTT | + |
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Preference number: 1 (lower is better) Translates to: WGVFVASCVLLCLLE*AVSLSGPILWPPAV Trigger: AACAGCTGGTGGCCAAAGAATTGGGCCAGATAGGGACACGGCTCACTCCAGCAGACAAAGCAGAACACATGAAGCGACAAAGACACCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR TCA 90 bp | CTAGCTGTCGACGAATGGGATGAAGCCACCTTACTTGATACACCGTaGAAGGAACAAAAAGGGACCACAGCAGTTCTGAGACCCAGGAGG | + |
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Preference number: 1 (lower is better) Translates to: LAVDEWDEATLLDTP*KEQKGTTAVLRPRR Trigger: CCTCCTGGGTCTCAGAACTGCTGTGGTCCCTTTTTGTTCCTTTCACGGTGTATCAAGTAAGGTGGCTTCATCCCATTCGTCGACAGCTAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000204343.3 ENSMUST00000204719.3 |
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| 3UTR-3UTR TCA 90 bp | AGCTGGGTGAGGGCTGCCCCCAGTCTCCGTCCTGCGGCTCTGGGTACCATCCTGCTGTTGTTAGCTGGGTaGGGGCTGCCCCCAGTCTCC | + |
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Preference number: 2 (lower is better) Translates to: SWVRAAPSLRPAALGTILLLLAG*GLPPVS Trigger: GGAGACTGGGGGCAGCCCTCACCCAGCTAACAACAG...CAGGATGGTACCCAGAGCCGCAGGACGGAGACTGGGGGCAGCCCTCACCCAGCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000092618.9 ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR-3UTR TCA 90 bp | ATCCGGCCTGTTGTTAGCTGGGTGAGGGCTGCCCCCAGTCTCCGTCCTGCGGCTCTGTTGTTAGCTGGGTaGGGGCTGCCCCCAGTCTCC | + |
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Preference number: 2 (lower is better) Translates to: IRPVVSWVRAAPSLRPAALLLAG*GLPPVS Trigger: GGAGACTGGGGGCAGCCCTCACCCAGCTAACAACAG...AGCCGCAGGACGGAGACTGGGGGCAGCCCTCACCCAGCTAACAACAGGCCGGAT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000092618.9 ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR-3UTR TCA 90 bp | CCTTTTTACCACCCACTCATCCGGCCTGTTGTTAGCTGGGTGAGGGCTGCCCCCCTGTTGTTAGCTGGGTaGGGGCTGCCCCCAGTCTCC | + |
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Preference number: 2 (lower is better) Translates to: PFYHPLIRPVVSWVRAAPLLLAG*GLPPVS Trigger: GGAGACTGGGGGCAGCCCTCACCCAGCTAACAACAG...GGGGGCAGCCCTCACCCAGCTAACAACAGGCCGGATGAGTGGGTGGTAAAAAGG 62% GC, longest homopolymer 6 nt, total homopolymer stretches 20 nt. Matches the following 3 transcripts: ENSMUST00000092618.9 ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR-3UTR CCA 90 bp | GTTGTTAGCTGGGTGAGGGCTGCCCCCAGTCTCCGTCCTGCGGCTCTGGGTACCTCCGTCCTGCGGCTCTaGGTACCATCCTGTTCCTTT | + |
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Preference number: 2 (lower is better) Translates to: VVSWVRAAPSLRPAALGTSVLRL*VPSCSF Trigger: AAAGGAACAGGATGGTACCCAGAGCCGCAGGACGGA...GGTACCCAGAGCCGCAGGACGGAGACTGGGGGCAGCCCTCACCCAGCTAACAAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092618.9 ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR-3UTR CCA 90 bp | CCCAGGAGGCATCTGACACCGTCACAGAGACCAGGGGTCTCTGAACTTGCAGGGGCCCTTCTCGGCCATTaGTGGCCTCTTCCTCGGGGA | + |
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Preference number: 2 (lower is better) Translates to: PRRHLTPSQRPGVSELAGALLGH*WPLPRG Trigger: TCCCCGAGGAAGAGGCCACCAATGGCCGAGAAGGGC...CCCTGCAAGTTCAGAGACCCCTGGTCTCTGTGACGGTGTCAGATGCCTCCTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000204719.3 |
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| 3UTR-3UTR CCA 90 bp | CCCAGGAGGCATCTGACACCGTCACAGAGACCAGGGGTCTCTGAACTTGCAGGGAGAGCAGCAAAGGTGTaGGCGGAAGCCTCGTGGAAG | + |
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Preference number: 2 (lower is better) Translates to: PRRHLTPSQRPGVSELAGRAAKV*AEASWK Trigger: CTTCCACGAGGCTTCCGCCCACACCTTTGCTGCTCT...CCCTGCAAGTTCAGAGACCCCTGGTCTCTGTGACGGTGTCAGATGCCTCCTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204719.3 |
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| 3UTR-3UTR CCA 90 bp | TTTTACCACCCACTCATCCGGCCTGTTGTTAGCTGGGTGAGGGCTGCCCCCAGTGGGCCCAGGAAGACTTaGCAAACGTTAGGGCTGTGG | + |
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Preference number: 2 (lower is better) Translates to: FYHPLIRPVVSWVRAAPSGPRKT*QTLGLW Trigger: CCACAGCCCTAACGTTTGCCAAGTCTTCCTGGGCCC...ACTGGGGGCAGCCCTCACCCAGCTAACAACAGGCCGGATGAGTGGGTGGTAAAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR-3UTR TCA 90 bp | AGCTGGGTGAGGGCTGCCCCCAGTCTCCGTCCTGCGGCTCTGGGTACCATCCTGAGGCAACAGAGACCTTaGGTGAAAACCCTGAATTTA | + |
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Preference number: 2 (lower is better) Translates to: SWVRAAPSLRPAALGTILRQQRP*VKTLNL Trigger: TAAATTCAGGGTTTTCACTCAAGGTCTCTGTTGCCT...CAGGATGGTACCCAGAGCCGCAGGACGGAGACTGGGGGCAGCCCTCACCCAGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092618.9 |
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| 3UTR-3UTR TCA 90 bp | CCCAATTCTTTGGCCACCAGCTGTTGTACACGGAGCGCAAACTCCTCACTCTCTTCCTGCAGGCTCTCCTaGCGGGCCCAGGAAGACTTG | + |
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Preference number: 2 (lower is better) Translates to: PNSLATSCCTRSANSSLSSCRLS*RAQEDL Trigger: CAAGTCTTCCTGGGCCCGTCAGGAGAGCCTGCAGGA...AGAGAGTGAGGAGTTTGCGCTCCGTGTACAACAGCTGGTGGCCAAAGAATTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR-3UTR CCA 90 bp | CTCCCTTTTTACCACCCACTCATCCGGCCTGTTGTTAGCTGGGTGAGGGCTGCCTCCGTCCTGCGGCTCTaGGTACCATCCTGTTCCTTT | + |
|
Preference number: 2 (lower is better) Translates to: LPFYHPLIRPVVSWVRAASVLRL*VPSCSF Trigger: AAAGGAACAGGATGGTACCCAGAGCCGCAGGACGGA...GGCAGCCCTCACCCAGCTAACAACAGGCCGGATGAGTGGGTGGTAAAAAGGGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092618.9 ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR-3UTR CCA 90 bp | CTCAGTGACATCTTCAGGCATGAAAGCCACAGCCCCCTCGAGCAGGTTTGTGATCGGCCTGTTGTTAGCTaGGTGAGGGCTGCCCCCAGT | + |
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Preference number: 2 (lower is better) Translates to: LSDIFRHESHSPLEQVCDRPVVS*VRAAPS Trigger: ACTGGGGGCAGCCCTCACCCAGCTAACAACAGGCCG...ATCACAAACCTGCTCGAGGGGGCTGTGGCTTTCATGCCTGAAGATGTCACTGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR-3UTR TCA 90 bp | CCCAGGAGGCATCTGACACCGTCACAGAGACCAGGGGTCTCTGAACTTGCAGGGACAGAATTTCTTGAGTaGCTCCACCAACTCCACCCG | + |
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Preference number: 2 (lower is better) Translates to: PRRHLTPSQRPGVSELAGTEFLE*LHQLHP Trigger: CGGGTGGAGTTGGTGGAGTCACTCAAGAAATTCTGT...CCCTGCAAGTTCAGAGACCCCTGGTCTCTGTGACGGTGTCAGATGCCTCCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204719.3 |
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| 3UTR-3UTR CCA 90 bp | CACAGAGACCAGGGGTCTCTGAACTTGCAGGGTAAGAGGTTGTACCACGTCCTGCTTCTCGGCCATTGGTaGCCTCTTCCTCGGGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: HRDQGSLNLQGKRLYHVLLLGHW*PLPRGR Trigger: TCTTCCCCGAGGAAGAGGCCACCAATGGCCGAGAAG...CAGGACGTGGTACAACCTCTTACCCTGCAAGTTCAGAGACCCCTGGTCTCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204719.3 |
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| 3UTR-3UTR CCA 90 bp | ACCAGCTGTTGTACACGGAGCGCAAACTCCTCACTCTCTTCCCCTAGCTGTCGAGGGCCCAGGAAGACTTaGCAAACGTTAGGGCTGTGG | + |
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Preference number: 2 (lower is better) Translates to: TSCCTRSANSSLSSPSCRGPRKT*QTLGLW Trigger: CCACAGCCCTAACGTTTGCCAAGTCTTCCTGGGCCC...TCGACAGCTAGGGGAAGAGAGTGAGGAGTTTGCGCTCCGTGTACAACAGCTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR-3UTR TCA 90 bp | GTGGGCGGAAGCCTCGTGGAAGCACAGAATTTCTTGAGTGACTCCACCAACTCCGCCTATCCATCTCCATaGAGCCCCGAGACCAACACA | + |
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Preference number: 2 (lower is better) Translates to: VGGSLVEAQNFLSDSTNSAYPSP*SPETNT Trigger: TGTGTTGGTCTCGGGGCTTCATGGAGATGGATAGGC...GGAGTTGGTGGAGTCACTCAAGAAATTCTGTGCTTCCACGAGGCTTCCGCCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204719.3 |
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| 3UTR-3UTR GCA 90 bp | TCTCCGTCCTGCGGCTCTGGGTACCATCCTGTTCCTTTGGGCTCATTCAGCCTCTGCATATTCATACAGTaGCTGCTTGCGCTCCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: SPSCGSGYHPVPLGSFSLCIFIQ*LLALLQ Trigger: CTGCAGGAGCGCAAGCAGGCACTGTATGAATATGCA...GAGGCTGAATGAGCCCAAAGGAACAGGATGGTACCCAGAGCCGCAGGACGGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR-3UTR TCA 90 bp | TTTTACCACCCACTCATCCGGCCTGTTGTTAGCTGGGTGAGGGCTGCCCCCAGTGGGCCTGTCTCTCTCTaGATCTCCTTCTTGCATATT | + |
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Preference number: 2 (lower is better) Translates to: FYHPLIRPVVSWVRAAPSGPVSL*ISFLHI Trigger: AATATGCAAGAAGGAGATTCAGAGAGAGACAGGCCC...ACTGGGGGCAGCCCTCACCCAGCTAACAACAGGCCGGATGAGTGGGTGGTAAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR-3UTR CCA 90 bp | TGGGCCTGTCTCTCTCTGAATCTCCTTCTTGCATATTCATACAGTGCCTGCTTGTCGCCAGGCCCGAGCTaGGGAACTGAGGTGATCACA | + |
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Preference number: 2 (lower is better) Translates to: WACLSLNLLLAYSYSACLSPGPS*GTEVIT Trigger: TGTGATCACCTCAGTTCCCCAGCTCGGGCCTGGCGA...CAAGCAGGCACTGTATGAATATGCAAGAAGGAGATTCAGAGAGAGACAGGCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203915.3 |
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| 3UTR CAA 90 bp | CACCGTCACAGAGACCAGGGGTCTCTGAACTTGCAGGGTAAGAGGTaGTACCACGTCCTGAATAGAAAATGGCCACGAACTGAAACGCAG | + |
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Preference number: 2 (lower is better) Translates to: HRHRDQGSLNLQGKR*YHVLNRKWPRTETQ Trigger: CTGCGTTTCAGTTCGTGGCCATTTTCTATTCAGGACGTGGTACAACCTCTTACCCTGCAAGTTCAGAGACCCCTGGTCTCTGTGACGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204719.3 |
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| 3UTR-3UTR GCA 90 bp | GAGCGAGAGTGGTCAGCTGCACATCAGAAGAAGGGCTGGGAGGAGAAGGAAAAGTCGCTTCATGTGTTCTaGTTTGTCTGCTGGAGTGAG | + |
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Preference number: 2 (lower is better) Translates to: EREWSAAHQKKGWEEKEKSLHVF*FVCWSE Trigger: CTCACTCCAGCAGACAAAGCAGAACACATGAAGCGA...CTTTTCCTTCTCCTCCCAGCCCTTCTTCTGATGTGCAGCTGACCACTCTCGCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR-3UTR CCA 90 bp | CTCAGTGACATCTTCAGGCATGAAAGCCACAGCCCCCTCGAGCAGGTTTGTGATCTGGATGACATTCAATaGCACATGGGGCAGAACCTC | + |
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Preference number: 2 (lower is better) Translates to: LSDIFRHESHSPLEQVCDLDDIQ*HMGQNL Trigger: GAGGTTCTGCCCCATGTGCCATTGAATGTCATCCAG...ATCACAAACCTGCTCGAGGGGGCTGTGGCTTTCATGCCTGAAGATGTCACTGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR-3UTR TCA 90 bp | AGCGAGAGTGGTCAGCTGCACATCAGAAGAAGGGCTGGGAGGAGAAGGAAAAGAGGGCCTGTCTCTCTCTaGATCTCCTTCTTGCATATT | + |
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Preference number: 2 (lower is better) Translates to: SESGQLHIRRRAGRRRKRGPVSL*ISFLHI Trigger: AATATGCAAGAAGGAGATTCAGAGAGAGACAGGCCC...TCTTTTCCTTCTCCTCCCAGCCCTTCTTCTGATGTGCAGCTGACCACTCTCGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR-3UTR GCA 90 bp | TCTCTCTCTGAATCTCCTTCTTGCATATTCATACAGTGCCTGCTTGCGCTCCTGTATTCATACAGTGCCTaGTTGCGCTCCTGCAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: SLSESPSCIFIQCLLALLYSYSA*LRSCRL Trigger: GAGCCTGCAGGAGCGCAAGCAGGCACTGTATGAATA...CAGGAGCGCAAGCAGGCACTGTATGAATATGCAAGAAGGAGATTCAGAGAGAGA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR-3UTR TCA 90 bp | TGTCTCTCTCTGAATCTCCTTCTTGCATATTCATACAGTGCCTGCTTGCGCTCCACCCTGAATTTAATGTaGGATTGGGGGAGCCCCATC | + |
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Preference number: 2 (lower is better) Translates to: CLSLNLLLAYSYSACLRSTLNLM*DWGSPI Trigger: GATGGGGCTCCCCCAATCTCACATTAAATTCAGGGT...GGAGCGCAAGCAGGCACTGTATGAATATGCAAGAAGGAGATTCAGAGAGAGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR-3UTR CCA 90 bp | TCGACGAATGGGATGAAGCCACCTTACTTGATACACCGTGAAAGGAACAAAAAGTTCTGCTTTGTCTGCTaGAGTGAGCCGTGTCCCTAT | + |
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Preference number: 2 (lower is better) Translates to: STNGMKPPYLIHRERNKKFCFVC*SEPCPY Trigger: ATAGGGACACGGCTCACTCCAGCAGACAAAGCAGAA...CTTTTTGTTCCTTTCACGGTGTATCAAGTAAGGTGGCTTCATCCCATTCGTCGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR-3UTR TCA 90 bp | AGTGTAATTTCACAGTTCCATTTTGACCATTCTCACCCATATTGTAGTCTTCAATGCTCAAGGGGCTTTTaGAACCCAAAGAGGCAACAG | + |
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Preference number: 2 (lower is better) Translates to: SVISQFHFDHSHPYCSLQCSRGF*NPKRQQ Trigger: CTGTTGCCTCTTTGGGTTTCAAAAGCCCCTTGAGCA...TTGAAGACTACAATATGGGTGAGAATGGTCAAAATGGAACTGTGAAATTACACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000092618.9 |
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| 3UTR CCA 72 bp | GCTCCTGCAGGCTCTCCTGACGGGCCCAGGAAGACTTaGCAAACGTTAGGGCTGTGGGCTGAGGGGTCGCCA | + |
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Preference number: 3 (lower is better) Translates to: APAGSPDGPRKT*QTLGLWAEGSP Trigger: TGGCGACCCCTCAGCCCACAGCCCTAACGTTTGCCAAGTCTTCCTGGGCCCGTCAGGAGAGCCTGCAGGAGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR-3UTR CAA 90 bp | AGCTGGGTGAGGGCTGCCCCCAGTCTCCGTCCTGCGGCTCTGGGTACCATCCTGGAATTTAATGTGAGATaGGGGGAGCCCCATCCCTCC | + |
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Preference number: 3 (lower is better) Translates to: SWVRAAPSLRPAALGTILEFNVR*GEPHPS Trigger: GGAGGGATGGGGCTCCCCCAATCTCACATTAAATTC...CAGGATGGTACCCAGAGCCGCAGGACGGAGACTGGGGGCAGCCCTCACCCAGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000092618.9 ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR CCA 72 bp | CCTTTTTACCACCCACTCATCCGGCCTGTTGTTAGCTaGGTGAGGGCTGCCCCCAGTCTCCGTCCTGCGGCT | + |
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Preference number: 3 (lower is better) Translates to: PFYHPLIRPVVS*VRAAPSLRPAA Trigger: AGCCGCAGGACGGAGACTGGGGGCAGCCCTCACCCAGCTAACAACAGGCCGGATGAGTGGGTGGTAAAAAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000092618.9 ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR-3UTR CAA 90 bp | CCCAGTCTCCGTCCTGCGGCTCTGGGTACCATCCTGTTCCTTTGGGCTCATTCATCATACAGTGCCTGCTaGCGCTCCTGCAGGCTCTCC | + |
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Preference number: 3 (lower is better) Translates to: PSLRPAALGTILFLWAHSSYSAC*RSCRLS Trigger: GGAGAGCCTGCAGGAGCGCAAGCAGGCACTGTATGA...TGAATGAGCCCAAAGGAACAGGATGGTACCCAGAGCCGCAGGACGGAGACTGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR-3UTR CAA 90 bp | AGCTGGGTGAGGGCTGCCCCCAGTCTCCGTCCTGCGGCTCTGGGTACCATCCTGATGAAGCCACCTTACTaGATACACCGTGAAAGGAAC | + |
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Preference number: 3 (lower is better) Translates to: SWVRAAPSLRPAALGTILMKPPY*IHRERN Trigger: GTTCCTTTCACGGTGTATCAAGTAAGGTGGCTTCAT...CAGGATGGTACCCAGAGCCGCAGGACGGAGACTGGGGGCAGCCCTCACCCAGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR-3UTR CAA 90 bp | CCTTTTTACCACCCACTCATCCGGCCTGTTGTTAGCTGGGTGAGGGCTGCCCCCATCTGGCCCAATTCTTaGGCCACCAGCTGTTGTACA | + |
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Preference number: 3 (lower is better) Translates to: PFYHPLIRPVVSWVRAAPIWPNS*ATSCCT Trigger: TGTACAACAGCTGGTGGCCAAAGAATTGGGCCAGAT...GGGGGCAGCCCTCACCCAGCTAACAACAGGCCGGATGAGTGGGTGGTAAAAAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR CCA 72 bp | CCCAGTCCTGGCCAGGTCTCTCTGGATGACATTCAATaGCACATGGGGCAGAACCTCCTTGACTCTGTGAGC | + |
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Preference number: 3 (lower is better) Translates to: PSPGQVSLDDIQ*HMGQNLLDSVS Trigger: GCTCACAGAGTCAAGGAGGTTCTGCCCCATGTGCCATTGAATGTCATCCAGAGAGACCTGGCCAGGACTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR TCA 72 bp | GGGCGGAAGCCTCGTGGAAGCACAGAATTTCTTGAGTaGCTCCACCAACTCCACCCGCCTATCCATCTCCAT | + |
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Preference number: 3 (lower is better) Translates to: GRKPRGSTEFLE*LHQLHPPIHLH Trigger: ATGGAGATGGATAGGCGGGTGGAGTTGGTGGAGTCACTCAAGAAATTCTGTGCTTCCACGAGGCTTCCGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204719.3 |
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| 3UTR CCA 72 bp | TCTGCTTTGTCTGCTGGAGTGAGCCGTGTCCCTATCTaGCCCAATTCTTTGGCCACCAGCTGTTGTACACGG | + |
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Preference number: 3 (lower is better) Translates to: SALSAGVSRVPI*PNSLATSCCTR Trigger: CCGTGTACAACAGCTGGTGGCCAAAGAATTGGGCCAGATAGGGACACGGCTCACTCCAGCAGACAAAGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR GCA 72 bp | TCTCTCTCTGAATCTCCTTCTTGCATATTCATACAGTaGCTGCTTGCGCTCCTGCAGGCTCTCCTGACGGGC | + |
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Preference number: 3 (lower is better) Translates to: SLSESPSCIFIQ*LLALLQALLTG Trigger: GCCCGTCAGGAGAGCCTGCAGGAGCGCAAGCAGGCACTGTATGAATATGCAAGAAGGAGATTCAGAGAGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR GCA 72 bp | GGGGTGTCTTTGTCGCTTCATGTGTTCTGCTTTGTCTaGTGGAGTGAGCCGTGTCCCTATCTGGCCCAATTC | + |
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Preference number: 3 (lower is better) Translates to: GVSLSLHVFCFV*WSEPCPYLAQF Trigger: GAATTGGGCCAGATAGGGACACGGCTCACTCCAGCAGACAAAGCAGAACACATGAAGCGACAAAGACACCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR-3UTR CAA 90 bp | TTTTACCACCCACTCATCCGGCCTGTTGTTAGCTGGGTGAGGGCTGCCCCCAGTGAGGCAACAGAGACCTaGAGTGAAAACCCTGAATTT | + |
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Preference number: 3 (lower is better) Translates to: FYHPLIRPVVSWVRAAPSEATET*SENPEF Trigger: AAATTCAGGGTTTTCACTCAAGGTCTCTGTTGCCTC...ACTGGGGGCAGCCCTCACCCAGCTAACAACAGGCCGGATGAGTGGGTGGTAAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000092618.9 |
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| 3UTR-3UTR CAA 90 bp | GGCCTGTCTCTCTCTGAATCTCCTTCTTGCATATTCATACAGTGCCTGCTTGCGGAATTTAATGTGAGATaGGGGGAGCCCCATCCCTCC | + |
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Preference number: 3 (lower is better) Translates to: GLSLSESPSCIFIQCLLAEFNVR*GEPHPS Trigger: GGAGGGATGGGGCTCCCCCAATCTCACATTAAATTC...CGCAAGCAGGCACTGTATGAATATGCAAGAAGGAGATTCAGAGAGAGACAGGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000203915.3 ENSMUST00000204343.3 |
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| 3UTR-3UTR CAA 90 bp | GAACAAAAAGGGACCACAGCAGTTCTGAGACCCAGGAGGCATCTGACACCGTCATTGCAGGGTAAGAGGTaGTACCACGTCCTGAATAGA | + |
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Preference number: 3 (lower is better) Translates to: EQKGTTAVLRPRRHLTPSLQGKR*YHVLNR Trigger: TCTATTCAGGACGTGGTACAACCTCTTACCCTGCAA...TGACGGTGTCAGATGCCTCCTGGGTCTCAGAACTGCTGTGGTCCCTTTTTGTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204719.3 |
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| 3UTR TCA 72 bp | TTTGTCGCTTCATGTGTTCTGCTTTGTCTGCTGGAGTaGGCCGTGTCCCTATCTGGCCCAATTCTTTGGCCA | + |
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Preference number: 3 (lower is better) Translates to: FVASCVLLCLLE*AVSLSGPILWP Trigger: TGGCCAAAGAATTGGGCCAGATAGGGACACGGCTCACTCCAGCAGACAAAGCAGAACACATGAAGCGACAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR CCA 72 bp | GTGTCTTTGTCGCTTCATGTGTTCTGCTTTGTCTGCTaGAGTGAGCCGTGTCCCTATCTGGCCCAATTCTTT | + |
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Preference number: 3 (lower is better) Translates to: VSLSLHVFCFVC*SEPCPYLAQFF Trigger: AAAGAATTGGGCCAGATAGGGACACGGCTCACTCCAGCAGACAAAGCAGAACACATGAAGCGACAAAGACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR CCA 72 bp | AAGGAAAAGAAGACTGCACTGACTGGGGGCGTAATCTaGGGTGTCTTTGTCGCTTCATGTGTTCTGCTTTGT | + |
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Preference number: 3 (lower is better) Translates to: KEKKTALTGGVI*GVFVASCVLLC Trigger: ACAAAGCAGAACACATGAAGCGACAAAGACACCCCAGATTACGCCCCCAGTCAGTGCAGTCTTCTTTTCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204343.3 |
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| 3UTR CAA 72 bp | GGTGTGGGCGGAAGCCTCGTGGAAGCACAGAATTTCTaGAGTGACTCCACCAACTCCACCCGCCTATCCATC | + |
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Preference number: 4 (lower is better) Translates to: GVGGSLVEAQNF*SDSTNSTRLSI Trigger: GATGGATAGGCGGGTGGAGTTGGTGGAGTCACTCAAGAAATTCTGTGCTTCCACGAGGCTTCCGCCCACACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204719.3 |
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| 3UTR CAA 72 bp | AGAGACCAGGGGTCTCTGAACTTGCAGGGTAAGAGGTaGTACCACGTCCTGAATAGAAAATGGCCACGAACT | + |
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Preference number: 4 (lower is better) Translates to: RDQGSLNLQGKR*YHVLNRKWPRT Trigger: AGTTCGTGGCCATTTTCTATTCAGGACGTGGTACAACCTCTTACCCTGCAAGTTCAGAGACCCCTGGTCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204719.3 |
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| 3UTR CAA 72 bp | CTTCAACCCAGGAAAAGAAACCTGCTCAAGGGGCTTTaGAAACCCAAAGAGGCAACAGAGACCTTGAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: LQPRKRNLLKGL*KPKEATETLSE Trigger: TTCACTCAAGGTCTCTGTTGCCTCTTTGGGTTTCAAAAGCCCCTTGAGCAGGTTTCTTTTCCTGGGTTGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000092618.9 |
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| CDS CCA 90 bp | CTGCGGAGGACGCTGTCGGGCAGAGCGCAGCTGACCAGGAAGACGTaGAGCCCGAGGAAGAGTCGCAGGACCAGGAGGCAGAGGCCGACC | + |
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Preference number: 5 (lower is better) Translates to: LRRTLSGRAQLTRKT*SPRKSRRTRRQRPT Trigger: GGTCGGCCTCTGCCTCCTGGTCCTGCGACTCTTCCTCGGGCTCCACGTCTTCCTGGTCAGCTGCGCTCTGCCCGACAGCGTCCTCCGCAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092618.10 ENSMUST00000203915.4 ENSMUST00000204343.4 |
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| CDS TCA 90 bp | ATACACCCATCGAATGCCTTTGGGGCAGAGGGTGCAGGCGGGGACTaGGATCCCTCAGTGACATCTTCAGGCATGAAAGCCACAGCCCCC | + |
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Preference number: 5 (lower is better) Translates to: IHPSNAFGAEGAGGD*DPSVTSSGMKATAP Trigger: GGGGGCTGTGGCTTTCATGCCTGAAGATGTCACTGAGGGATCTCAGTCCCCGCCTGCACCCTCTGCCCCAAAGGCATTCGATGGGTGTAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203915.4 |
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| CDS CCA 90 bp | GAGGGCTTGCGAAGTCATCATCATTATACACCCATCGAATGCCTTTaGGGCAGAGGGTGCAGGCGGGGACTGAGATCCCTCAGTGACATC | + |
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Preference number: 5 (lower is better) Translates to: EGLRSHHHYTPIECL*GRGCRRGLRSLSDI Trigger: GATGTCACTGAGGGATCTCAGTCCCCGCCTGCACCCTCTGCCCCAAAGGCATTCGATGGGTGTATAATGATGATGACTTCGCAAGCCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203915.4 |
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| CDS CCA 90 bp | TTGAGTAGAGGGGTGCTACAGGTGGTGAGGAGGTTGACTATGTTGTaGTCAAAAGGTGTTACGTGGTTGGAAATAAGGACCCTGACGCGG | + |
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Preference number: 5 (lower is better) Translates to: LSRGVLQVVRRLTML*SKGVTWLEIRTLTR Trigger: CCGCGTCAGGGTCCTTATTTCCAACCACGTAACACCTTTTGACCACAACATAGTCAACCTCCTCACCACCTGTAGCACCCCTCTACTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092618.10 ENSMUST00000203915.4 |
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| CDS GCA 72 bp | AGCGCGAGCAGCAGGAAGCCGTCACTCGGGAGCCGGTaGGAGTCAAAGAGCCGCTCCGGCCCCGGAGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: SASSRKPSLGSR*ESKSRSGPGAG Trigger: CCCAGCTCCGGGGCCGGAGCGGCTCTTTGACTCGCACCGGCTCCCGAGTGACGGCTTCCTGCTGCTCGCGCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000092618.10 ENSMUST00000203915.4 ENSMUST00000204343.4 ENSMUST00000204719.4 |
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| CDS CCA 72 bp | CCTCCTGCCGGGCCACGAGCCCCAGGACCGCACACATaGTTCGTACCACGAACCTGCGGAGGACGCTGTCGG | + |
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Preference number: 6 (lower is better) Translates to: PPAGPRAPGPHT*FVPRTCGGRCR Trigger: CCGACAGCGTCCTCCGCAGGTTCGTGGTACGAACCATGTGTGCGGTCCTGGGGCTCGTGGCCCGGCAGGAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092618.10 ENSMUST00000203915.4 |
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| CDS CCA 72 bp | CCTCCTGCCGGGCCACGAGCCCCAGGACCGCACACATaGTTCGTACCACGAACCAGGAAGACGTGGAGCCCG | + |
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Preference number: 6 (lower is better) Translates to: PPAGPRAPGPHT*FVPRTRKTWSP Trigger: CGGGCTCCACGTCTTCCTGGTTCGTGGTACGAACCATGTGTGCGGTCCTGGGGCTCGTGGCCCGGCAGGAGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204719.4 |
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| CDS CCA 72 bp | ACGCTGTCGGGCAGAGCGCAGCTGACCAGGAAGACGTaGAGCCCGAGGAAGAGTCGCAGGACCAGGAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: TLSGRAQLTRKT*SPRKSRRTRRQ Trigger: CTGCCTCCTGGTCCTGCGACTCTTCCTCGGGCTCCACGTCTTCCTGGTCAGCTGCGCTCTGCCCGACAGCGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000092618.10 ENSMUST00000203915.4 ENSMUST00000204343.4 |
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| CDS CCA 72 bp | CCGCACACATGGTTCGTACCACGAACCAGGAAGACGTaGAGCCCGAGGAAGAGTCGCAGGACCAGGAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: PHTWFVPRTRKT*SPRKSRRTRRQ Trigger: CTGCCTCCTGGTCCTGCGACTCTTCCTCGGGCTCCACGTCTTCCTGGTTCGTGGTACGAACCATGTGTGCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204719.4 |
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| CDS TCA 72 bp | TCGAATGCCTTTGGGGCAGAGGGTGCAGGCGGGGACTaGGATCCCTCAGTGACATCTTCAGGCATGAAAGCC | + |
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Preference number: 6 (lower is better) Translates to: SNAFGAEGAGGD*DPSVTSSGMKA Trigger: GGCTTTCATGCCTGAAGATGTCACTGAGGGATCTCAGTCCCCGCCTGCACCCTCTGCCCCAAAGGCATTCGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203915.4 |
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| CDS GCA 72 bp | CATTATACACCCATCGAATGCCTTTGGGGCAGAGGGTaGAGGCGGGGACTGAGATCCCTCAGTGACATCTTC | + |
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Preference number: 6 (lower is better) Translates to: HYTPIECLWGRG*RRGLRSLSDIF Trigger: GAAGATGTCACTGAGGGATCTCAGTCCCCGCCTGCACCCTCTGCCCCAAAGGCATTCGATGGGTGTATAATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203915.4 |
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| CDS CCA 72 bp | CGAAGTCATCATCATTATACACCCATCGAATGCCTTTaGGGCAGAGGGTGCAGGCGGGGACTGAGATCCCTC | + |
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Preference number: 6 (lower is better) Translates to: RSHHHYTPIECL*GRGCRRGLRSL Trigger: GAGGGATCTCAGTCCCCGCCTGCACCCTCTGCCCCAAAGGCATTCGATGGGTGTATAATGATGATGACTTCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203915.4 |
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| CDS CAA 72 bp | GCGAAGTCATCATCATTATACACCCATCGAATGCCTTaGGGGCAGAGGGTGCAGGCGGGGACTGAGATCCCT | + |
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Preference number: 6 (lower is better) Translates to: AKSSSLYTHRMP*GQRVQAGTEIP Trigger: AGGGATCTCAGTCCCCGCCTGCACCCTCTGCCCCAAAGGCATTCGATGGGTGTATAATGATGATGACTTCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203915.4 |
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| CDS CCA 72 bp | GGGGTGCTACAGGTGGTGAGGAGGTTGACTATGTTGTaGTCAAAAGGTGTTACGTGGTTGGAAATAAGGACC | + |
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Preference number: 6 (lower is better) Translates to: GVLQVVRRLTML*SKGVTWLEIRT Trigger: GGTCCTTATTTCCAACCACGTAACACCTTTTGACCACAACATAGTCAACCTCCTCACCACCTGTAGCACCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092618.10 ENSMUST00000203915.4 |
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| CDS CAA 90 bp | CTATTGAGTAGAGGGGTGCTACAGGTGGTGAGGAGGTTGACTATGTaGTGGTCAAAAGGTGTTACGTGGTTGGAAATAAGGACCCTGACG | + |
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Preference number: 6 (lower is better) Translates to: LLSRGVLQVVRRLTM*WSKGVTWLEIRTLT Trigger: CGTCAGGGTCCTTATTTCCAACCACGTAACACCTTTTGACCACAACATAGTCAACCTCCTCACCACCTGTAGCACCCCTCTACTCAATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092618.10 ENSMUST00000203915.4 |
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| CDS CAA 72 bp | AGAGGGGTGCTACAGGTGGTGAGGAGGTTGACTATGTaGTGGTCAAAAGGTGTTACGTGGTTGGAAATAAGG | + |
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Preference number: 6 (lower is better) Translates to: RGVLQVVRRLTM*WSKGVTWLEIR Trigger: CCTTATTTCCAACCACGTAACACCTTTTGACCACAACATAGTCAACCTCCTCACCACCTGTAGCACCCCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092618.10 ENSMUST00000203915.4 |
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| CDS CAA 72 bp | CTATTGAGTAGAGGGGTGCTACAGGTGGTGAGGAGGTaGACTATGTTGTGGTCAAAAGGTGTTACGTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: LLSRGVLQVVRR*TMLWSKGVTWL Trigger: CAACCACGTAACACCTTTTGACCACAACATAGTCAACCTCCTCACCACCTGTAGCACCCCTCTACTCAATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092618.10 ENSMUST00000203915.4 |
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