RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AUH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021460

Ensembl transcript IDs: ENSMUST00000021913.16, ENSMUST00000110031.4, ENSMUST00000119311.8, ENSMUST00000120535.8, ENSMUST00000123599.8, ENSMUST00000137064.8, ENSMUST00000230563.2

Found 232 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGGGTGGCTCTaGACCACTTCCAGCACTATGGGAGGCTGCGGCGGGCTCTCCTCC +
Preference number: 1 (lower is better)
Translates to: STLVTAISHGSTGWL*TTSSTMGGCGGLSS
Trigger: GGAGGAGAGCCCGCCGCAGCCTCCCATAGTGCTGGAAGTGGTTCAGAGCCACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137064.8
3UTR CCA 90 bp ACAGCTTCAAAGGTTCACCATGAAGAGATAGGCACTGGCTGTGGCTaGAGGCGCCTCCTCCCACTCCCGTTCGCTCGGCCTTTCCATGAA +
Preference number: 1 (lower is better)
Translates to: TASKVHHEEIGTGCG*RRLLPLPFARPFHE
Trigger: TTCATGGAAAGGCCGAGCGAACGGGAGTGGGAGGAGGCGCCTCCAGCCACAGCCAGTGCCTATCTCTTCATGGTGAACCTTTGAAGCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR TCA 90 bp GGTAAGAACTTTCAGCCCCACCCTACTCCACTGGGTGGGCAGGGATaGTGGTCGGAGAATGGGTGCTCAATCCCCAATGGGCAAGGACTT +
Preference number: 1 (lower is better)
Translates to: GKNFQPHPTPLGGQG*WSENGCSIPNGQGL
Trigger: AAGTCCTTGCCCATTGGGGATTGAGCACCCATTCTCCGACCATCATCCCTGCCCACCCAGTGGAGTAGGGTGGGGCTGAAAGTTCTTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 90 bp CTCCAGAAAGATGCAGAGGGAGGCTGCCACAGGCCTCTCCCGACTTaGTTCTGGGCTCAGGAGACAGCTTCAAAGGTTCACCATGAAGAG +
Preference number: 1 (lower is better)
Translates to: LQKDAEGGCHRPLPT*FWAQETASKVHHEE
Trigger: CTCTTCATGGTGAACCTTTGAAGCTGTCTCCTGAGCCCAGAAGCAAGTCGGGAGAGGCCTGTGGCAGCCTCCCTCTGCATCTTTCTGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR CCA 90 bp CAGCACGGCTGTCTCAGAGGGACCCACACCAGTTCTCTAGCTCGCTaGCCAGGCCAGTATCCAAAAACTCAATTGAACTCTGTCAGGGGG +
Preference number: 1 (lower is better)
Translates to: QHGCLRGTHTSSLAR*PGQYPKTQLNSVRG
Trigger: CCCCCTGACAGAGTTCAATTGAGTTTTTGGATACTGGCCTGGCCAGCGAGCTAGAGAACTGGTGTGGGTCCCTCTGAGACAGCCGTGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 90 bp GCCAGACAGACATGGCCACAGGTACGGCCTAGGCAAGCAGCCCAGTaGTTTAGTTGTGTCTCGTTAAATAAAGCCTGCACCGTGGCTGCA +
Preference number: 1 (lower is better)
Translates to: ARQTWPQVRPRQAAQ*FSCVSLNKACTVAA
Trigger: TGCAGCCACGGTGCAGGCTTTATTTAACGAGACACAACTAAAGCACTGGGCTGCTTGCCTAGGCCGTACCTGTGGCCATGTCTGTCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR GCA 90 bp AGTCCTCCCGAGGGCTTCCAGGCTGCAGCTCAGCTGTCAAGCCTCTaGGTGTTCACAGACACATCCTCCGGTGGTCTTCATTTAATGTTG +
Preference number: 1 (lower is better)
Translates to: SPPEGFQAAAQLSSL*VFTDTSSGGLHLML
Trigger: CAACATTAAATGAAGACCACCGGAGGATGTGTCTGTGAACACGCAGAGGCTTGACAGCTGAGCTGCAGCCTGGAAGCCCTCGGGAGGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR GCA 90 bp ATTAAGTTCATTTTGTGTTGGCCAGCTGTTCCTGGGCATGGGGCCTaGCCTGGTGTGTGTCCGGTGTGCCCAGTGACACTCTGCTATAGG +
Preference number: 1 (lower is better)
Translates to: IKFILCWPAVPGHGA*PGVCPVCPVTLCYR
Trigger: CCTATAGCAGAGTGTCACTGGGCACACCGGACACACACCAGGGCAGGCCCCATGCCCAGGAACAGCTGGCCAACACAAAATGAACTTAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR CCA 90 bp CACACAGGCTGTCTAGCAGAGACTGTCCTCCCCTCAAAAATCAATTaGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCG +
Preference number: 1 (lower is better)
Translates to: HTGCLAETVLPSKIN*RTPLIPALGRQRQA
Trigger: CGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCAATTGATTTTTGAGGGGAGGACAGTCTCTGCTAGACAGCCTGTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CCA 90 bp AAAGATGCAGAGGGAGGCTGCCACAGGCCTCTCCCGACTTGCTTCTaGGCTCAGGAGACAGCTTCAAAGGTTCACCATGAAGAGATAGGC +
Preference number: 1 (lower is better)
Translates to: KDAEGGCHRPLPTCF*AQETASKVHHEEIG
Trigger: GCCTATCTCTTCATGGTGAACCTTTGAAGCTGTCTCCTGAGCCCAGAAGCAAGTCGGGAGAGGCCTGTGGCAGCCTCCCTCTGCATCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR TCA 90 bp ACAGGTGAAAGGCTAAGGCAGCCTGGTGAAGGAGGAATGTTTCGCTaGAGCAGACACAGGAGAGGGGATGCTCTGCTGAAGCAAGCTCGT +
Preference number: 1 (lower is better)
Translates to: TGERLRQPGEGGMFR*SRHRRGDALLKQAR
Trigger: ACGAGCTTGCTTCAGCAGAGCATCCCCTCTCCTGTGTCTGCTTCAGCGAAACATTCCTCCTTCACCAGGCTGCCTTAGCCTTTCACCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR CCA 90 bp GGTGGCTTTTACCAGCTCTCTGGTTTCCTGTCACTGCTGTGTGCTTaGGCCACTACGATATCACTAGCAGGTGATGCAAGCAGGAGCCTT +
Preference number: 1 (lower is better)
Translates to: GGFYQLSGFLSLLCA*ATTISLAGDASRSL
Trigger: AAGGCTCCTGCTTGCATCACCTGCTAGTGATATCGTAGTGGCCCAAGCACACAGCAGTGACAGGAAACCAGAGAGCTGGTAAAAGCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CCA 90 bp GTAGCTGGCATGCACTGGCAAGCTTGGTGGCTTTTACCAGCTCTCTaGTTTCCTGTCACTGCTGTGTGCTTGGGCCACTACGATATCACT +
Preference number: 1 (lower is better)
Translates to: VAGMHWQAWWLLPAL*FPVTAVCLGHYDIT
Trigger: AGTGATATCGTAGTGGCCCAAGCACACAGCAGTGACAGGAAACCAGAGAGCTGGTAAAAGCCACCAAGCTTGCCAGTGCATGCCAGCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 90 bp AGGTTGTGGCCAGGGCAGATGAAACCTAACGTGCTTGGTGTCAGCTaGCCTGCTGTTGCTAGGAAAGCAACTACAGACGTGTCTGTCATT +
Preference number: 1 (lower is better)
Translates to: RLWPGQMKPNVLGVS*PAVARKATTDVSVI
Trigger: AATGACAGACACGTCTGTAGTTGCTTTCCTAGCAACAGCAGGGCAGCTGACACCAAGCACGTTAGGTTTCATCTGCCCTGGCCACAACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR GCA 90 bp GAACTCGATTGCTGGTGTATCCGTGAGGTGTTTGCAAGTGGACCATaGTGCCACTGCCTGCTAACCTGTGAACTGAACTGCCGATTTCCA +
Preference number: 1 (lower is better)
Translates to: ELDCWCIREVFASGP*CHCLLTCELNCRFP
Trigger: TGGAAATCGGCAGTTCAGTTCACAGGTTAGCAGGCAGTGGCAGCATGGTCCACTTGCAAACACCTCACGGATACACCAGCAATCGAGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR GCA 90 bp GCAAGTGGACCATGCTGCCACTGCCTGCTAACCTGTGAACTGAACTaGCGATTTCCAGATTTCCAGACAACACAGACTGGAGTTGCTTTC +
Preference number: 1 (lower is better)
Translates to: ASGPCCHCLLTCELN*RFPDFQTTQTGVAF
Trigger: GAAAGCAACTCCAGTCTGTGTTGTCTGGAAATCTGGAAATCGGCAGTTCAGTTCACAGGTTAGCAGGCAGTGGCAGCATGGTCCACTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR GCA 90 bp AGGCAAGCAGCCCAGTGCTTTAGTTGTGTCTCGTTAAATAAAGCCTaGACCGTGGCTGCAGCAAGGCTTCTTGTCCTCTTTCTGTTGGTG +
Preference number: 1 (lower is better)
Translates to: RQAAQCFSCVSLNKA*TVAAARLLVLFLLV
Trigger: CACCAACAGAAAGAGGACAAGAAGCCTTGCTGCAGCCACGGTGCAGGCTTTATTTAACGAGACACAACTAAAGCACTGGGCTGCTTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR GCA 90 bp GCCCAAACTCACTCACTAAAAACAACTCAAGGAACTCAGGCAATGTaGAGTTCTACCACTGTGGAGGCAAGCCTCAGAAACGTGCCAGCA +
Preference number: 1 (lower is better)
Translates to: AQTHSLKTTQGTQAM*SSTTVEASLRNVPA
Trigger: TGCTGGCACGTTTCTGAGGCTTGCCTCCACAGTGGTAGAACTGCACATTGCCTGAGTTCCTTGAGTTGTTTTTAGTGAGTGAGTTTGGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR TCA 90 bp CTAAGTGCCCATGTCTCTCCAAGTGGCTTGAGGCCACTACTTGCATaGCTGATTTCTGGCTCCCAGCATCATTTGTTGTTGTCAAAGACC +
Preference number: 1 (lower is better)
Translates to: LSAHVSPSGLRPLLA*LISGSQHHLLLSKT
Trigger: GGTCTTTGACAACAACAAATGATGCTGGGAGCCAGAAATCAGTCATGCAAGTAGTGGCCTCAAGCCACTTGGAGAGACATGGGCACTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR GCA 90 bp CTGGACATTTGTGAGAAGAGCCTAGGAGGTACAGAGCACTGGGGGTaGAGGAGTGCTAAAAAGCAAACAATTCTCATGGAGCAGGTAAGT +
Preference number: 1 (lower is better)
Translates to: LDICEKSLGGTEHWG*RSAKKQTILMEQVS
Trigger: ACTTACCTGCTCCATGAGAATTGTTTGCTTTTTAGCACTCCTGCACCCCCAGTGCTCTGTACCTCCTAGGCTCTTCTCACAAATGTCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 90 bp GCTCCCTCGCAGATACTGCGACTATCTGAAGTACATGATCTGAGGTaGTTCCTAAAATGTGAGGGCATCAAGGAAACCAGCTGTATGGAC +
Preference number: 1 (lower is better)
Translates to: APSQILRLSEVHDLR*FLKCEGIKETSCMD
Trigger: GTCCATACAGCTGGTTTCCTTGATGCCCTCACATTTTAGGAAGCACCTCAGATCATGTACTTCAGATAGTCGCAGTATCTGCGAGGGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CCA 90 bp AAGCAAACAATTCTCATGGAGCAGGTAAGTTTCAGGGAGAGTAGCTaGCATGCACTGGCAAGCTTGGTGGCTTTTACCAGCTCTCTGGTT +
Preference number: 1 (lower is better)
Translates to: KQTILMEQVSFRESS*HALASLVAFTSSLV
Trigger: AACCAGAGAGCTGGTAAAAGCCACCAAGCTTGCCAGTGCATGCCAGCTACTCTCCCTGAAACTTACCTGCTCCATGAGAATTGTTTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR TCA 90 bp GTGCCTGGCTTAGACTCCAGGTTTCTGGTACTGAGTCCCAAGCTTTaGACTCTGGAGTACCTTTTGTTATTCAAAGCAGCCCTTCCCAAA +
Preference number: 1 (lower is better)
Translates to: VPGLDSRFLVLSPKL*TLEYLLLFKAALPK
Trigger: TTTGGGAAGGGCTGCTTTGAATAACAAAAGGTACTCCAGAGTTCAAAGCTTGGGACTCAGTACCAGAAACCTGGAGTCTAAGCCAGGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR TCA 90 bp TCTTTTCTCCTTAAAAGCAAGAAGACCTTCCAGTCTGTCCTTTGTTaGGATGGTCTCTTCCAGAATGTCACTGGGCGTCGGGAGTCACTC +
Preference number: 1 (lower is better)
Translates to: SFLLKSKKTFQSVLC*DGLFQNVTGRRESL
Trigger: GAGTGACTCCCGACGCCCAGTGACATTCTGGAAGAGACCATCTCAACAAAGGACAGACTGGAAGGTCTTCTTGCTTTTAAGGAGAAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137064.8
3UTR GCA 90 bp ACTGAACTGCCGATTTCCAGATTTCCAGACAACACAGACTGGAGTTaGTTTCTAAACAGGTCCACTTCCCCCACCCCCATCCTTTCTTTT +
Preference number: 1 (lower is better)
Translates to: TELPISRFPDNTDWS*FLNRSTSPTPILSF
Trigger: AAAAGAAAGGATGGGGGTGGGGGAAGTGGACCTGTTTAGAAAGCAACTCCAGTCTGTGTTGTCTGGAAATCTGGAAATCGGCAGTTCAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR GCA 90 bp TTCCAGGGCCAAAAGTATCTTTTTGTGATGGCTTCGGCCTATGGTTaGCATTTGGAACACAAGTCTCAAGCCCTGCCATCTTACCACAAT +
Preference number: 1 (lower is better)
Translates to: FQGQKYLFVMASAYG*HLEHKSQALPSYHN
Trigger: ATTGTGGTAAGATGGCAGGGCTTGAGACTTGTGTTCCAAATGGCAACCATAGGCCGAAGCCATCACAAAAAGATACTTTTGGCCCTGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR GCA 90 bp CTTCTGACCAACCATGATATAAATGTGGGGTTTCCCTCAAAGCCCTaGCCAAACTCACTCACTAAAAACAACTCAAGGAACTCAGGCAAT +
Preference number: 1 (lower is better)
Translates to: LLTNHDINVGFPSKP*PNSLTKNNSRNSGN
Trigger: ATTGCCTGAGTTCCTTGAGTTGTTTTTAGTGAGTGAGTTTGGGCAGGGCTTTGAGGGAAACCCCACATTTATATCATGGTTGGTCAGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 90 bp CAAGCTCGTGAAAGGACACGTGATAAGGATTCTTTGCTAATGACATaGGTGTATTGGTCCACCTTACACTGTGTAGTTGAGCTGCATTTG +
Preference number: 1 (lower is better)
Translates to: QARERTRDKDSLLMT*VYWSTLHCVVELHL
Trigger: CAAATGCAGCTCAACTACACAGTGTAAGGTGGACCAATACACGCATGTCATTAGCAAAGAATCCTTATCACGTGTCCTTTCACGAGCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR TCA 90 bp GTTCACATAAAAATGATAGACAGACAGATAGACCAACTCACCGACTaGCCAACCATTAAGTTCATTTTGTGTTGGCCAGCTGTTCCTGGG +
Preference number: 1 (lower is better)
Translates to: VHIKMIDRQIDQLTD*PTIKFILCWPAVPG
Trigger: CCCAGGAACAGCTGGCCAACACAAAATGAACTTAATGGTTGGTCAGTCGGTGAGTTGGTCTATCTGTCTGTCTATCATTTTTATGTGAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR GCA 90 bp TGCTTCCTAAAATGTGAGGGCATCAAGGAAACCAGCTGTATGGACTaGCTTGTGCTAGGAATAAAAATCAGAAATCCACAAGAACCACTG +
Preference number: 1 (lower is better)
Translates to: CFLKCEGIKETSCMD*LVLGIKIRNPQEPL
Trigger: CAGTGGTTCTTGTGGATTTCTGATTTTTATTCCTAGCACAAGGCAGTCCATACAGCTGGTTTCCTTGATGCCCTCACATTTTAGGAAGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR TCA 90 bp ATCATAAGACAAATCCTAAGAACAATTCATACTTCTGACCAACCATaGTATAAATGTGGGGTTTCCCTCAAAGCCCTGCCCAAACTCACT +
Preference number: 1 (lower is better)
Translates to: IIRQILRTIHTSDQP*YKCGVSLKALPKLT
Trigger: AGTGAGTTTGGGCAGGGCTTTGAGGGAAACCCCACATTTATATCATGGTTGGTCAGAAGTATGAATTGTTCTTAGGATTTGTCTTATGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR CCA 90 bp GCACGGGGTGGCTCTGAACCACTTCCAGCACTATGGGAGGCTGCGGCGGGCTCTCCACTTCCAGCACTATaGGAGGCTGCGGCGGGCTCT +
Preference number: 2 (lower is better)
Translates to: ARGGSEPLPALWEAAAGSPLPAL*EAAAGS
Trigger: AGAGCCCGCCGCAGCCTCCCATAGTGCTGGAAGTGG...AGAGCCCGCCGCAGCCTCCCATAGTGCTGGAAGTGGTTCAGAGCCACCCCGTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
3UTR-3UTR GCA 90 bp GCTGTTCCTGGGCATGGGGCCTGCCCTGGTGTGTGTCCGGTGTGCCCAGTGACACGAGGGCTTCCAGGCTaGAGCTCAGCTGTCAAGCCT +
Preference number: 2 (lower is better)
Translates to: AVPGHGACPGVCPVCPVTRGLPG*SSAVKP
Trigger: AGGCTTGACAGCTGAGCTGCAGCCTGGAAGCCCTCG...TGTCACTGGGCACACCGGACACACACCAGGGCAGGCCCCATGCCCAGGAACAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR-3UTR GCA 90 bp CAAGGTGGGAGCACGGCAGCATCCAGGCAGACACAGGGATGGAAGAGCGGAGAGCTGGCAAGCCTCCTGTaGATATCAGTGCAGCAGGTC +
Preference number: 2 (lower is better)
Translates to: QGGSTAASRQTQGWKSGELASLL*ISVQQV
Trigger: GACCTGCTGCACTGATATGCACAGGAGGCTTGCCAG...CTCTCCGCTCTTCCATCCCTGTGTCTGCCTGGATGCTGCCGTGCTCCCACCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR CAA 90 bp GACAGCGGTGATGCTGGGCAGGCGCAGTGCTCTGAGATCAATCACTaGGGTTGTGTGCGGAAAGTGCTGAGTGGCCAGGCCAAAGGCAAG +
Preference number: 2 (lower is better)
Translates to: DSGDAGQAQCSEINH*GCVRKVLSGQAKGK
Trigger: CTTGCCTTTGGCCTGGCCACTCAGCACTTTCCGCACACAACCCAAGTGATTGATCTCAGAGCACTGCGCCTGCCCAGCATCACCGCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR GCA 90 bp GGCTTCCAGGCTGCAGCTCAGCTGTCAAGCCTCTGCGTGTTCACAGACACATCCAGCCTGCACCGTGGCTaGAGCAAGGCTTCTTGTCCT +
Preference number: 2 (lower is better)
Translates to: GFQAAAQLSSLCVFTDTSSLHRG*SKASCP
Trigger: AGGACAAGAAGCCTTGCTGCAGCCACGGTGCAGGCT...GGATGTGTCTGTGAACACGCAGAGGCTTGACAGCTGAGCTGCAGCCTGGAAGCC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR-3UTR CCA 90 bp AGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGGGCCACTTCCAGCACTATaGGAGGCTGCGGCGGGCTCT +
Preference number: 2 (lower is better)
Translates to: SENPLSTLVTAISHGSTGPLPAL*EAAAGS
Trigger: AGAGCCCGCCGCAGCCTCCCATAGTGCTGGAAGTGG...CCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
3UTR-3UTR CCA 90 bp TTGGTGACTCTGGCTCTGGCTGTGTGTCCCTCACACAGATTCATGAGAAGCACCGATAGGCACTGGCTGTaGCTGGAGGCGCCTCCTCCC +
Preference number: 2 (lower is better)
Translates to: LVTLALAVCPSHRFMRSTDRHWL*LEAPPP
Trigger: GGGAGGAGGCGCCTCCAGCCACAGCCAGTGCCTATC...GGTGCTTCTCATGAATCTGTGTGAGGGACACACAGCCAGAGCCAGAGTCACCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR-3UTR CCA 90 bp GAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGGGTGGCTCACTGCAATTTCCCATaGCAGCACGGGGTGGCTCTG +
Preference number: 2 (lower is better)
Translates to: EPTLHFGHCNFPWQHGVAHCNFP*QHGVAL
Trigger: CAGAGCCACCCCGTGCTGCCATGGGAAATTGCAGTG...AGCCACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
3UTR-3UTR GCA 90 bp GGGAGCACGGCAGCATCCAGGCAGACACAGGGATGGAAGAGCGGAGAGTTCTACCTTGAGGCCACTACTTaGATGACTGATTTCTGGCTC +
Preference number: 2 (lower is better)
Translates to: GSTAASRQTQGWKSGEFYLEATT*MTDFWL
Trigger: GAGCCAGAAATCAGTCATGCAAGTAGTGGCCTCAAG...GTAGAACTCTCCGCTCTTCCATCCCTGTGTCTGCCTGGATGCTGCCGTGCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR CCA 90 bp TGGTTGCCATTTGGAACACAAGTCTCAAGCCCTGCCATCTTACCACAATGTTCTGGCACTGGCTGTGGCTaGAGGCGCCTCCTCCCACTC +
Preference number: 2 (lower is better)
Translates to: WLPFGTQVSSPAILPQCSGTGCG*RRLLPL
Trigger: GAGTGGGAGGAGGCGCCTCCAGCCACAGCCAGTGCC...AGAACATTGTGGTAAGATGGCAGGGCTTGAGACTTGTGTTCCAAATGGCAACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR CAA 90 bp TCACACAGGCTGTCTAGCAGAGACTGTCCTCCCCTCAAAAATCAATaGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGC +
Preference number: 2 (lower is better)
Translates to: SHRLSSRDCPPLKNQ*AHTFNPSTWEAEAG
Trigger: GCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCAATTGATTTTTGAGGGGAGGACAGTCTCTGCTAGACAGCCTGTGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CAA 90 bp AAAGCCTGCACCGTGGCTGCAGCAAGGCTTCTTGTCCTCTTTCTGTaGGTGACTCTGGCTCTGGCTGTGTGTCCCTCACACAGATTCATG +
Preference number: 2 (lower is better)
Translates to: KACTVAAARLLVLFL*VTLALAVCPSHRFM
Trigger: CATGAATCTGTGTGAGGGACACACAGCCAGAGCCAGAGTCACCAACAGAAAGAGGACAAGAAGCCTTGCTGCAGCCACGGTGCAGGCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR-3UTR TCA 90 bp CCTGGCTTACAGGTTCAGCCCATTATCATCAAGGTGGGAGCACGGCAGCATCCAAGGCCACTACTTGCATaGCTGATTTCTGGCTCCCAG +
Preference number: 2 (lower is better)
Translates to: PGLQVQPIIIKVGARQHPRPLLA*LISGSQ
Trigger: CTGGGAGCCAGAAATCAGTCATGCAAGTAGTGGCCT...TGGATGCTGCCGTGCTCCCACCTTGATGATAATGGGCTGAACCTGTAAGCCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR TCA 90 bp ACAGGCTGCCGTGAGTGCTGGGAACCAAACTCGGGTCCTCTGCAACCTGCAGTAAGCCCACGTCCACAGTaGCACATCTATTCTAACAAG +
Preference number: 2 (lower is better)
Translates to: TGCRECWEPNSGPLQPAVSPRPQ*HIYSNK
Trigger: CTTGTTAGAATAGATGTGTCACTGTGGACGTGGGCT...TACTGCAGGTTGCAGAGGACCCGAGTTTGGTTCCCAGCACTCACGGCAGCCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR GCA 90 bp GAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGGGTGGCTCTCCACTTTGGTCACTaGAATTTCCCATGGCAGCAC +
Preference number: 2 (lower is better)
Translates to: EPTLHFGHCNFPWQHGVALHFGH*NFPWQH
Trigger: GTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAG...AGCCACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
3UTR-3UTR GCA 90 bp GACAACACAGACTGGAGTTGCTTTCTAAACAGGTCCACTTCCCCCACCCCCATCGCTGGGCAGGCGCAGTaGTCTGAGATCAATCACTTG +
Preference number: 2 (lower is better)
Translates to: DNTDWSCFLNRSTSPTPIAGQAQ*SEINHL
Trigger: CAAGTGATTGATCTCAGAGCACTGCGCCTGCCCAGC...GATGGGGGTGGGGGAAGTGGACCTGTTTAGAAAGCAACTCCAGTCTGTGTTGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR CAA 90 bp GAGCAGGTAAGTTTCAGGGAGAGTAGCTGGCATGCACTGGCAAGCTaGGTGGCTTTTACCAGCTCTCTGGTTTCCTGTCACTGCTGTGTG +
Preference number: 2 (lower is better)
Translates to: EQVSFRESSWHALAS*VAFTSSLVSCHCCV
Trigger: CACACAGCAGTGACAGGAAACCAGAGAGCTGGTAAAAGCCACCAAGCTTGCCAGTGCATGCCAGCTACTCTCCCTGAAACTTACCTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR CCA 90 bp TGCATCTACTTCCTGGAGAGTCCTCCCGAGGGCTTCCAGGCTGCAGCTCAGCTGAGACACATCCTCCGGTaGTCTTCATTTAATGTTGAC +
Preference number: 2 (lower is better)
Translates to: CIYFLESPPEGFQAAAQLRHILR*SSFNVD
Trigger: GTCAACATTAAATGAAGACCACCGGAGGATGTGTCT...CAGCTGAGCTGCAGCCTGGAAGCCCTCGGGAGGACTCTCCAGGAAGTAGATGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR-3UTR TCA 90 bp CACCCTCAGTCACACTCCCACCTGCCCTGCCCTAAGCAACCTCACTTTTCCATGATCCAAAAACTCAATTaGACTCTGTCAGGGGGAGCT +
Preference number: 2 (lower is better)
Translates to: HPQSHSHLPCPKQPHFSMIQKLN*TLSGGA
Trigger: AGCTCCCCCTGACAGAGTTCAATTGAGTTTTTGGAT...CATGGAAAAGTGAGGTTGCTTAGGGCAGGGCAGGTGGGAGTGTGACTGAGGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR TCA 90 bp AGACTGGAGTTGCTTTCTAAACAGGTCCACTTCCCCCACCCCCATCCTTTCTTTAGAGGCTGGAAGATCTaGGGCAAGTTGGCTCCAAGC +
Preference number: 2 (lower is better)
Translates to: RLELLSKQVHFPHPHPFFRGWKI*GKLAPS
Trigger: GCTTGGAGCCAACTTGCCTCAGATCTTCCAGCCTCT...AAAGAAAGGATGGGGGTGGGGGAAGTGGACCTGTTTAGAAAGCAACTCCAGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR GCA 90 bp CACCCTCAGTCACACTCCCACCTGCCCTGCCCTAAGCAACCTCACTTTTCCATGTTTCCCTCAAAGCCCTaGCCAAACTCACTCACTAAA +
Preference number: 2 (lower is better)
Translates to: HPQSHSHLPCPKQPHFSMFPSKP*PNSLTK
Trigger: TTTAGTGAGTGAGTTTGGGCAGGGCTTTGAGGGAAA...CATGGAAAAGTGAGGTTGCTTAGGGCAGGGCAGGTGGGAGTGTGACTGAGGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR CCA 90 bp CACCCTCAGTCACACTCCCACCTGCCCTGCCCTAAGCAACCTCACTTTTCCATGTCGAGGAAGAAAGGTTaGTGTGATTCATTTGAGGGC +
Preference number: 2 (lower is better)
Translates to: HPQSHSHLPCPKQPHFSMSRKKG*CDSFEG
Trigger: GCCCTCAAATGAATCACACCAACCTTTCTTCCTCGA...CATGGAAAAGTGAGGTTGCTTAGGGCAGGGCAGGTGGGAGTGTGACTGAGGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR CCA 90 bp GTTTGTGGCTCTCATATCTTCGCTTCCCTGAGAGAGGCTGAGAACTTCTCTTGGGGACAGTATTCCGGCTaGTCTGCTGAGGCGGAAACA +
Preference number: 2 (lower is better)
Translates to: VCGSHIFASLREAENFSWGQYSG*SAEAET
Trigger: TGTTTCCGCCTCAGCAGACCAGCCGGAATACTGTCC...CCAAGAGAAGTTCTCAGCCTCTCTCAGGGAAGCGAAGATATGAGAGCCACAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR TCA 90 bp TCTGGTACTGAGTCCCAAGCTTTGAACTCTGGAGTACCTTTTGTTATTCAAAGCGCGTCCATGTGCTCATaGGCGCCACACTGGGAACCG +
Preference number: 2 (lower is better)
Translates to: SGTESQALNSGVPFVIQSASMCS*APHWEP
Trigger: CGGTTCCCAGTGTGGCGCTCATGAGCACATGGACGC...GCTTTGAATAACAAAAGGTACTCCAGAGTTCAAAGCTTGGGACTCAGTACCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR TCA 90 bp AAACAGGAAGGCAAAGATGCTGGGAAACACAGCTCCCTCGCAGATACTGCGACTGATGCTGGACATTTGTaGGAAGAGCCTAGGAGGTAC +
Preference number: 2 (lower is better)
Translates to: KQEGKDAGKHSSLADTATDAGHL*EEPRRY
Trigger: GTACCTCCTAGGCTCTTCTCACAAATGTCCAGCATC...AGTCGCAGTATCTGCGAGGGAGCTGTGTTTCCCAGCATCTTTGCCTTCCTGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR TCA 90 bp AGACTGGAGTTGCTTTCTAAACAGGTCCACTTCCCCCACCCCCATCCTTTCTTTTCTCTCCAAGTGGCTTaGGGCCACTACTTGCATGAC +
Preference number: 2 (lower is better)
Translates to: RLELLSKQVHFPHPHPFFSLQVA*GHYLHD
Trigger: GTCATGCAAGTAGTGGCCTCAAGCCACTTGGAGAGA...AAAGAAAGGATGGGGGTGGGGGAAGTGGACCTGTTTAGAAAGCAACTCCAGTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR GCA 90 bp CTGCGACTATCTGAAGTACATGATCTGAGGTGCTTCCTAAAATGTGAGGGCATCAGTCACACTCCCACCTaGCCTGCCCTAAGCAACCTC +
Preference number: 2 (lower is better)
Translates to: LRLSEVHDLRCFLKCEGISHTPT*PALSNL
Trigger: GAGGTTGCTTAGGGCAGGGCAGGTGGGAGTGTGACT...GATGCCCTCACATTTTAGGAAGCACCTCAGATCATGTACTTCAGATAGTCGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR GCA 90 bp GAAAGGACCAGGACAGGTCTTGCCACTGTTGACTCGATTTGCTGCATGCATGAACTGGTTTCCTGTCACTaGTGTGTGCTTGGGCCACTA +
Preference number: 2 (lower is better)
Translates to: ERTRTGLATVDSICCMHELVSCH*CVLGPL
Trigger: TAGTGGCCCAAGCACACAGCAGTGACAGGAAACCAG...TTCATGCATGCAGCAAATCGAGTCAACAGTGGCAAGACCTGTCCTGGTCCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR CCA 90 bp TCACTAGCAGGTGATGCAAGCAGGAGCCTTCATCAGAGATCACACCTGATGGTGACCGCTCCTTTAGGGTaGGCCTTCACACCTCAATTT +
Preference number: 2 (lower is better)
Translates to: SLAGDASRSLHQRSHLMVTAPLG*AFTPQF
Trigger: AAATTGAGGTGTGAAGGCCCACCCTAAAGGAGCGGT...CACCATCAGGTGTGATCTCTGATGAAGGCTCCTGCTTGCATCACCTGCTAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR CCA 90 bp TTCAGCCCATTATCATCAAGGTGGGAGCACGGCAGCATCCAGGCAGACACAGGGTGCATGACTGATTTCTaGCTCCCAGCATCATTTGTT +
Preference number: 2 (lower is better)
Translates to: FSPLSSRWEHGSIQADTGCMTDF*LPASFV
Trigger: AACAAATGATGCTGGGAGCCAGAAATCAGTCATGCA...CCCTGTGTCTGCCTGGATGCTGCCGTGCTCCCACCTTGATGATAATGGGCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR CAA 90 bp AGCCATGATAAAATGCCTCGAGGAAGAAAGGTTGGTGTGATTCATTaGAGGGCACACTCTGTAAGGCAGGGAAGTCCTGGGGGAAGCTTC +
Preference number: 2 (lower is better)
Translates to: SHDKMPRGRKVGVIH*RAHSVRQGSPGGSF
Trigger: GAAGCTTCCCCCAGGACTTCCCTGCCTTACAGAGTGTGCCCTCAAATGAATCACACCAACCTTTCTTCCTCGAGGCATTTTATCATGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR GCA 90 bp AAACAGGAAGGCAAAGATGCTGGGAAACACAGCTCCCTCGCAGATACTGCGACTAAATCCTACAGCAGATaGAGGGGGCAACTTGGCTTT +
Preference number: 2 (lower is better)
Translates to: KQEGKDAGKHSSLADTATKSYSR*RGQLGF
Trigger: AAAGCCAAGTTGCCCCCTGCATCTGCTGTAGGATTT...AGTCGCAGTATCTGCGAGGGAGCTGTGTTTCCCAGCATCTTTGCCTTCCTGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR GCA 90 bp AAAAAGCAAACAATTCTCATGGAGCAGGTAAGTTTCAGGGAGAGTAGCTGGCATAGTCAGGGGAGGCTCTaGACCCTCAGTCACACTCCC +
Preference number: 2 (lower is better)
Translates to: KKQTILMEQVSFRESSWHSQGRL*TLSHTP
Trigger: GGGAGTGTGACTGAGGGTGCAGAGCCTCCCCTGACT...ATGCCAGCTACTCTCCCTGAAACTTACCTGCTCCATGAGAATTGTTTGCTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR GCA 90 bp CCAGTGACACTCTGCTATAGGAAACTGATTTCTTCTTTCCCATCAGGTATCGACAGGCCTCTCCCGACTTaGTTCTGGGCTCAGGAGACA +
Preference number: 2 (lower is better)
Translates to: PVTLCYRKLISSFPSGIDRPLPT*FWAQET
Trigger: TGTCTCCTGAGCCCAGAAGCAAGTCGGGAGAGGCCT...GTCGATACCTGATGGGAAAGAAGAAATCAGTTTCCTATAGCAGAGTGTCACTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR-3UTR CCA 90 bp CCAGTGACACTCTGCTATAGGAAACTGATTTCTTCTTTCCCATCAGGTATCGACCCCCAACATGTCCTGTaGGCCAGACAGACATGGCCA +
Preference number: 2 (lower is better)
Translates to: PVTLCYRKLISSFPSGIDPQHVL*ARQTWP
Trigger: TGGCCATGTCTGTCTGGCCCACAGGACATGTTGGGG...GTCGATACCTGATGGGAAAGAAGAAATCAGTTTCCTATAGCAGAGTGTCACTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR-3UTR TCA 90 bp CAAGGAAACCAGCTGTATGGACTGCCTTGTGCTAGGAATAAAAATCAGAAATCCGATCCATCACTACCCTaGCAGCATGTCTGGGCCCCA +
Preference number: 2 (lower is better)
Translates to: QGNQLYGLPCARNKNQKSDPSLP*QHVWAP
Trigger: TGGGGCCCAGACATGCTGTCAGGGTAGTGATGGATC...GGATTTCTGATTTTTATTCCTAGCACAAGGCAGTCCATACAGCTGGTTTCCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR TCA 90 bp GTTTGTGGCTCTCATATCTTCGCTTCCCTGAGAGAGGCTGAGAACTTCTCTTGGAGTCTGGGAAGAGAATaGGCTTTGTCTGCCAGAGAA +
Preference number: 2 (lower is better)
Translates to: VCGSHIFASLREAENFSWSLGRE*ALSARE
Trigger: TTCTCTGGCAGACAAAGCTCATTCTCTTCCCAGACT...CCAAGAGAAGTTCTCAGCCTCTCTCAGGGAAGCGAAGATATGAGAGCCACAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR CCA 90 bp GTTTGTGGCTCTCATATCTTCGCTTCCCTGAGAGAGGCTGAGAACTTCTCTTGGCTGAGATCAATCACTTaGGTTGTGTGCGGAAAGTGC +
Preference number: 2 (lower is better)
Translates to: VCGSHIFASLREAENFSWLRSIT*VVCGKC
Trigger: GCACTTTCCGCACACAACCCAAGTGATTGATCTCAG...CCAAGAGAAGTTCTCAGCCTCTCTCAGGGAAGCGAAGATATGAGAGCCACAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR CCA 90 bp GTTTGTGGCTCTCATATCTTCGCTTCCCTGAGAGAGGCTGAGAACTTCTCTTGGTCCGAACTCGATTGCTaGTGTATCCGTGAGGTGTTT +
Preference number: 2 (lower is better)
Translates to: VCGSHIFASLREAENFSWSELDC*CIREVF
Trigger: AAACACCTCACGGATACACCAGCAATCGAGTTCGGA...CCAAGAGAAGTTCTCAGCCTCTCTCAGGGAAGCGAAGATATGAGAGCCACAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR CCA 90 bp TTCATTTTGTGTTGGCCAGCTGTTCCTGGGCATGGGGCCTGCCCTGGTGTGTGTACCAAGCTGATCTCTTaGTGTTTTGCTTTGTTCTTT +
Preference number: 2 (lower is better)
Translates to: FILCWPAVPGHGACPGVCTKLIS*CFALFF
Trigger: AAAGAACAAAGCAAAACACCAAGAGATCAGCTTGGT...ACACACACCAGGGCAGGCCCCATGCCCAGGAACAGCTGGCCAACACAAAATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR CAA 90 bp TGTGCCTGGCTTAGACTCCAGGTTTCTGGTACTGAGTCCCAAGCTTaGAACTCTGGAGTACCTTTTGTTATTCAAAGCAGCCCTTCCCAA +
Preference number: 2 (lower is better)
Translates to: CAWLRLQVSGTESQA*NSGVPFVIQSSPSQ
Trigger: TTGGGAAGGGCTGCTTTGAATAACAAAAGGTACTCCAGAGTTCAAAGCTTGGGACTCAGTACCAGAAACCTGGAGTCTAAGCCAGGCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CAA 90 bp GGCTCTGGCTGTGTGTCCCTCACACAGATTCATGAGAAGCACCTCTaGAAACTGAACCCTAAAGGGAATACACACTCCCCTATCTTACAA +
Preference number: 2 (lower is better)
Translates to: GSGCVSLTQIHEKHL*KLNPKGNTHSPILQ
Trigger: TTGTAAGATAGGGGAGTGTGTATTCCCTTTAGGGTTCAGTTTCAAGAGGTGCTTCTCATGAATCTGTGTGAGGGACACACAGCCAGAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR-3UTR TCA 90 bp GCCGATTTCCAGATTTCCAGACAACACAGACTGGAGTTGCTTTCTAAACAGGTCCACTACTTGCATGACTaGTTTCTGGCTCCCAGCATC +
Preference number: 2 (lower is better)
Translates to: ADFQISRQHRLELLSKQVHYLHD*FLAPSI
Trigger: GATGCTGGGAGCCAGAAATCAGTCATGCAAGTAGTG...GACCTGTTTAGAAAGCAACTCCAGTCTGTGTTGTCTGGAAATCTGGAAATCGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR TCA 90 bp GGCTCTCATATCTTCGCTTCCCTGAGAGAGGCTGAGAACTTCTCTTGGTTTCCCTGTGAACAGACACCATaGCCAAGGCAACTCATAAAA +
Preference number: 2 (lower is better)
Translates to: GSHIFASLREAENFSWFPCEQTP*PRQLIK
Trigger: TTTTATGAGTTGCCTTGGTCATGGTGTCTGTTCACA...GGGAAACCAAGAGAAGTTCTCAGCCTCTCTCAGGGAAGCGAAGATATGAGAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR CCA 90 bp GCCGATTTCCAGATTTCCAGACAACACAGACTGGAGTTGCTTTCTAAACAGGTCTCTGTGGCTTCCATCTaGCAAGCCTCCTGTGCATAT +
Preference number: 2 (lower is better)
Translates to: ADFQISRQHRLELLSKQVSVASI*QASCAY
Trigger: ATATGCACAGGAGGCTTGCCAGATGGAAGCCACAGA...GACCTGTTTAGAAAGCAACTCCAGTCTGTGTTGTCTGGAAATCTGGAAATCGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR GCA 90 bp CTTGTCCTCTTTCTGTTGGTGACTCTGGCTCTGGCTGTGTGTCCCTCACACAGAGATCTCTTGGTGTTTTaGTTTGTTCTTTTCCGTCTT +
Preference number: 2 (lower is better)
Translates to: LVLFLLVTLALAVCPSHRDLLVF*FVLFRL
Trigger: AAGACGGAAAAGAACAAAGCAAAACACCAAGAGATC...TCTGTGTGAGGGACACACAGCCAGAGCCAGAGTCACCAACAGAAAGAGGACAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR-3UTR CCA 90 bp AATAATGTTATTCCTTGGACCAAGCATATTCAAACCATCACAGTGGGTCACACCGCGGAAAGTGCTGAGTaGCCAGGCCAAAGGCAAGAT +
Preference number: 2 (lower is better)
Translates to: NNVIPWTKHIQTITVGHTAESAE*PGQRQD
Trigger: ATCTTGCCTTTGGCCTGGCCACTCAGCACTTTCCGC...GGTGTGACCCACTGTGATGGTTTGAATATGCTTGGTCCAAGGAATAACATTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR GCA 90 bp AAAAAGCAAACAATTCTCATGGAGCAGGTAAGTTTCAGGGAGAGTAGCTGGCATGGAACTCAGGCAATGTaGAGTTCTACCACTGTGGAG +
Preference number: 2 (lower is better)
Translates to: KKQTILMEQVSFRESSWHGTQAM*SSTTVE
Trigger: CTCCACAGTGGTAGAACTGCACATTGCCTGAGTTCC...ATGCCAGCTACTCTCCCTGAAACTTACCTGCTCCATGAGAATTGTTTGCTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CAA 90 bp CTCTGCGTGTTCACAGACACATCCTCCGGTGGTCTTCATTTAATGTaGACAGAACTTATTCATCTTTTCTTTCCCATTCCCCAACATGTC +
Preference number: 2 (lower is better)
Translates to: LCVFTDTSSGGLHLM*TELIHLFFPIPQHV
Trigger: GACATGTTGGGGAATGGGAAAGAAAAGATGAATAAGTTCTGTCAACATTAAATGAAGACCACCGGAGGATGTGTCTGTGAACACGCAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR-3UTR CCA 90 bp CGGCAGAAAGGATATACACATAACTGTTGTAACAAGTTTGCAAATTCAACTCATGAAGCTTCGGACAGCTaGAAGCAGAGAATGATGGCT +
Preference number: 2 (lower is better)
Translates to: RQKGYTHNCCNKFANSTHEASDS*KQRMMA
Trigger: AGCCATCATTCTCTGCTTCCAGCTGTCCGAAGCTTC...ATGAGTTGAATTTGCAAACTTGTTACAACAGTTATGTGTATATCCTTTCTGCCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR CCA 90 bp CGGCAGAAAGGATATACACATAACTGTTGTAACAAGTTTGCAAATTCAACTCATGCTTCAGCACTGGACTaGTCACTAGGGAGTAAAGCT +
Preference number: 2 (lower is better)
Translates to: RQKGYTHNCCNKFANSTHASALD*SLGSKA
Trigger: AGCTTTACTCCCTAGTGACCAGTCCAGTGCTGAAGC...ATGAGTTGAATTTGCAAACTTGTTACAACAGTTATGTGTATATCCTTTCTGCCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR GCA 90 bp CGGCAGAAAGGATATACACATAACTGTTGTAACAAGTTTGCAAATTCAACTCATACCAGCTGTATGGACTaGCTTGTGCTAGGAATAAAA +
Preference number: 2 (lower is better)
Translates to: RQKGYTHNCCNKFANSTHTSCMD*LVLGIK
Trigger: TTTTATTCCTAGCACAAGGCAGTCCATACAGCTGGT...ATGAGTTGAATTTGCAAACTTGTTACAACAGTTATGTGTATATCCTTTCTGCCG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 72 bp GTGGCTTCCATCTGGCAAGCCTCCTGTGCATATCAGTaGAGCAGGTCGCTAGCCCGGCAGGTCTGGGCCCTC +
Preference number: 3 (lower is better)
Translates to: VASIWQASCAYQ*SRSLARQVWAL
Trigger: GAGGGCCCAGACCTGCCGGGCTAGCGACCTGCTGCACTGATATGCACAGGAGGCTTGCCAGATGGAAGCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR CCA 72 bp GTGTTGGCCAGCTGTTCCTGGGCATGGGGCCTGCCCTaGTGTGTGTCCGGTGTGCCCAGTGACACTCTGCTA +
Preference number: 3 (lower is better)
Translates to: VLASCSWAWGLP*CVSGVPSDTLL
Trigger: TAGCAGAGTGTCACTGGGCACACCGGACACACACCAGGGCAGGCCCCATGCCCAGGAACAGCTGGCCAACAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR CCA 72 bp GCAGCACGGGGTGGCTCTGAACCACTTCCAGCACTATaGGAGGCTGCGGCGGGCTCTCCTCCTATTCTCCCT +
Preference number: 3 (lower is better)
Translates to: AARGGSEPLPAL*EAAAGSPPILP
Trigger: AGGGAGAATAGGAGGAGAGCCCGCCGCAGCCTCCCATAGTGCTGGAAGTGGTTCAGAGCCACCCCGTGCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137064.8
3UTR GCA 72 bp CCAGGGGGTAGACTCCAGAAAGATGCAGAGGGAGGCTaGCACAGGCCTCTCCCGACTTGCTTCTGGGCTCAG +
Preference number: 3 (lower is better)
Translates to: PGGRLQKDAEGG*HRPLPTCFWAQ
Trigger: CTGAGCCCAGAAGCAAGTCGGGAGAGGCCTGTGGCAGCCTCCCTCTGCATCTTTCTGGAGTCTACCCCCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR-3UTR CAA 90 bp GGCTTCCAGGCTGCAGCTCAGCTGTCAAGCCTCTGCGTGTTCACAGACACATCCCAGGCCTCTCCCGACTaGCTTCTGGGCTCAGGAGAC +
Preference number: 3 (lower is better)
Translates to: GFQAAAQLSSLCVFTDTSQASPD*LLGSGD
Trigger: GTCTCCTGAGCCCAGAAGCAAGTCGGGAGAGGCCTG...GGATGTGTCTGTGAACACGCAGAGGCTTGACAGCTGAGCTGCAGCCTGGAAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR TCA 72 bp ACCCGCAAGGTCCCTCCTGCTGACTCGAGCCAAGGCTaGGACCTGGCTATCTCTGCTAGGTCGTGTCACTGC +
Preference number: 3 (lower is better)
Translates to: TRKVPPADSSQG*DLAISARSCHC
Trigger: GCAGTGACACGACCTAGCAGAGATAGCCAGGTCTCAGCCTTGGCTCGAGTCAGCAGGAGGGACCTTGCGGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR GCA 72 bp ATTTTGTGTTGGCCAGCTGTTCCTGGGCATGGGGCCTaGCCTGGTGTGTGTCCGGTGTGCCCAGTGACACTC +
Preference number: 3 (lower is better)
Translates to: ILCWPAVPGHGA*PGVCPVCPVTL
Trigger: GAGTGTCACTGGGCACACCGGACACACACCAGGGCAGGCCCCATGCCCAGGAACAGCTGGCCAACACAAAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR TCA 72 bp AGGGCACAGGGCAGAAGAGGTTGTGGCCAGGGCAGATaGAACCTAACGTGCTTGGTGTCAGCTGCCCTGCTG +
Preference number: 3 (lower is better)
Translates to: RAQGRRGCGQGR*NLTCLVSAALL
Trigger: CAGCAGGGCAGCTGACACCAAGCACGTTAGGTTTCATCTGCCCTGGCCACAACCTCTTCTGCCCTGTGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR TCA 72 bp GCGCCTCCTCCCACTCCCGTTCGCTCGGCCTTTCCATaGAGACGTGCTGACACCTCTCAGAGGCTTTCTTCA +
Preference number: 3 (lower is better)
Translates to: APPPTPVRSAFP*RRADTSQRLSS
Trigger: TGAAGAAAGCCTCTGAGAGGTGTCAGCACGTCTTCATGGAAAGGCCGAGCGAACGGGAGTGGGAGGAGGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR GCA 72 bp GATGCAGAGGGAGGCTGCCACAGGCCTCTCCCGACTTaGTTCTGGGCTCAGGAGACAGCTTCAAAGGTTCAC +
Preference number: 3 (lower is better)
Translates to: DAEGGCHRPLPT*FWAQETASKVH
Trigger: GTGAACCTTTGAAGCTGTCTCCTGAGCCCAGAAGCAAGTCGGGAGAGGCCTGTGGCAGCCTCCCTCTGCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR-3UTR CAA 90 bp GGGAGCACGGCAGCATCCAGGCAGACACAGGGATGGAAGAGCGGAGAGTTCTACGCTGCTGGCAGAAGATaGGCTTCTAGGCAGCTAGGA +
Preference number: 3 (lower is better)
Translates to: GSTAASRQTQGWKSGEFYAAGRR*ASRQLG
Trigger: TCCTAGCTGCCTAGAAGCCAATCTTCTGCCAGCAGC...GTAGAACTCTCCGCTCTTCCATCCCTGTGTCTGCCTGGATGCTGCCGTGCTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR CAA 90 bp CAAAGAAGTCAGGGGAGGCTCTGCACCCTCAGTCACACTCCCACCTGCCCTGCCGGGGGCAACTTGGCTTaGTTTCCTGTAGCCATGATA +
Preference number: 3 (lower is better)
Translates to: QRSQGRLCTLSHTPTCPAGGNLA*FPVAMI
Trigger: TATCATGGCTACAGGAAACAAAGCCAAGTTGCCCCC...GGCAGGGCAGGTGGGAGTGTGACTGAGGGTGCAGAGCCTCCCCTGACTTCTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 72 bp CATGAGATCTGTGGCTTCCATCTGGCAAGCCTCCTGTaGATATCAGTGCAGCAGGTCGCTAGCCCGGCAGGT +
Preference number: 3 (lower is better)
Translates to: HEICGFHLASLL*ISVQQVASPAG
Trigger: ACCTGCCGGGCTAGCGACCTGCTGCACTGATATGCACAGGAGGCTTGCCAGATGGAAGCCACAGATCTCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR GCA 72 bp CCTGGGCATGGGGCCTGCCCTGGTGTGTGTCCGGTGTaGCCAGTGACACTCTGCTATAGGAAACTGATTTCT +
Preference number: 3 (lower is better)
Translates to: PGHGACPGVCPV*PVTLCYRKLIS
Trigger: AGAAATCAGTTTCCTATAGCAGAGTGTCACTGGGCACACCGGACACACACCAGGGCAGGCCCCATGCCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR CCA 72 bp GAGGGAGGCTGCCACAGGCCTCTCCCGACTTGCTTCTaGGCTCAGGAGACAGCTTCAAAGGTTCACCATGAA +
Preference number: 3 (lower is better)
Translates to: EGGCHRPLPTCF*AQETASKVHHE
Trigger: TTCATGGTGAACCTTTGAAGCTGTCTCCTGAGCCCAGAAGCAAGTCGGGAGAGGCCTGTGGCAGCCTCCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR GCA 72 bp GAGGCTCTGCACCCTCAGTCACACTCCCACCTGCCCTaGCCTAAGCAACCTCACTTTTCCATGGTAAGTGAC +
Preference number: 3 (lower is better)
Translates to: EALHPQSHSHLP*PKQPHFSMVSD
Trigger: GTCACTTACCATGGAAAAGTGAGGTTGCTTAGGGCAGGGCAGGTGGGAGTGTGACTGAGGGTGCAGAGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 72 bp AGCCTTCCAGACAGCGGTGATGCTGGGCAGGCGCAGTaGTCTGAGATCAATCACTTGGGTTGTGTGCGGAAA +
Preference number: 3 (lower is better)
Translates to: SLPDSGDAGQAQ*SEINHLGCVRK
Trigger: TTTCCGCACACAACCCAAGTGATTGATCTCAGAGCACTGCGCCTGCCCAGCATCACCGCTGTCTGGAAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR CCA 72 bp GAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATaGCAGCACGGGGTGGCTCTGAACCACTTCCAGCAC +
Preference number: 3 (lower is better)
Translates to: EPTLHFGHCNFP*QHGVALNHFQH
Trigger: GTGCTGGAAGTGGTTCAGAGCCACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
3UTR CCA 72 bp CCAAACAAGATTGCCCCTCACAGGCCTGCCCTTCCGTaGGCTCTACACCCTATCTATCACGTGGACTGTCAG +
Preference number: 3 (lower is better)
Translates to: PNKIAPHRPALP*ALHPIYHVDCQ
Trigger: CTGACAGTCCACGTGATAGATAGGGTGTAGAGCCCACGGAAGGGCAGGCCTGTGAGGGGCAATCTTGTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CCA 72 bp TGCCTGGCTTACAGGTTCAGCCCATTATCATCAAGGTaGGAGCACGGCAGCATCCAGGCAGACACAGGGATG +
Preference number: 3 (lower is better)
Translates to: CLAYRFSPLSSR*EHGSIQADTGM
Trigger: CATCCCTGTGTCTGCCTGGATGCTGCCGTGCTCCCACCTTGATGATAATGGGCTGAACCTGTAAGCCAGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR CAA 90 bp GGGAGCACGGCAGCATCCAGGCAGACACAGGGATGGAAGAGCGGAGAGTTCTACTCCCAGCATCATTTGTaGTTGTCAAAGACCCCTTCC +
Preference number: 3 (lower is better)
Translates to: GSTAASRQTQGWKSGEFYSQHHL*LSKTPS
Trigger: GGAAGGGGTCTTTGACAACAACAAATGATGCTGGGA...GTAGAACTCTCCGCTCTTCCATCCCTGTGTCTGCCTGGATGCTGCCGTGCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR TCA 72 bp AGGCTAAGGCAGCCTGGTGAAGGAGGAATGTTTCGCTaGAGCAGACACAGGAGAGGGGATGCTCTGCTGAAG +
Preference number: 3 (lower is better)
Translates to: RLRQPGEGGMFR*SRHRRGDALLK
Trigger: CTTCAGCAGAGCATCCCCTCTCCTGTGTCTGCTTCAGCGAAACATTCCTCCTTCACCAGGCTGCCTTAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR GCA 72 bp GGTGGGCCTTCACACCTCAATTTAACCAAACAAGATTaGCCCTCACAGGCCTGCCCTTCCGTGGGCTCTACA +
Preference number: 3 (lower is better)
Translates to: GGPSHLNLTKQD*PSQACPSVGST
Trigger: TGTAGAGCCCACGGAAGGGCAGGCCTGTGAGGGGCAATCTTGTTTGGTTAAATTGAGGTGTGAAGGCCCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CCA 72 bp GATCAATCACTTGGGTTGTGTGCGGAAAGTGCTGAGTaGCCAGGCCAAAGGCAAGATGAGCCAGCAGCGTCA +
Preference number: 3 (lower is better)
Translates to: DQSLGLCAESAE*PGQRQDEPAAS
Trigger: TGACGCTGCTGGCTCATCTTGCCTTTGGCCTGGCCACTCAGCACTTTCCGCACACAACCCAAGTGATTGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR CAA 90 bp GGCTCTCATATCTTCGCTTCCCTGAGAGAGGCTGAGAACTTCTCTTGGTTTCCCGCTAGGATGAGGGTCTaGAAGCCCACGTCCACAGTG +
Preference number: 3 (lower is better)
Translates to: GSHIFASLREAENFSWFPARMRV*KPTSTV
Trigger: CACTGTGGACGTGGGCTTCAAGACCCTCATCCTAGC...GGGAAACCAAGAGAAGTTCTCAGCCTCTCTCAGGGAAGCGAAGATATGAGAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR TCA 72 bp GAGACAGAGCTTGGCTTGCTGGTCCAGCTAGCTGCGTaGTGTTTGTGGCTCTCATATCTTCGCTTCCCTGAG +
Preference number: 3 (lower is better)
Translates to: ETELGLLVQLAA*CLWLSYLRFPE
Trigger: CTCAGGGAAGCGAAGATATGAGAGCCACAAACATCACGCAGCTAGCTGGACCAGCAAGCCAAGCTCTGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR GCA 72 bp CCAGGGCAGATGAAACCTAACGTGCTTGGTGTCAGCTaGCCTGCTGTTGCTAGGAAAGCAACTACAGACGTG +
Preference number: 3 (lower is better)
Translates to: PGQMKPNVLGVS*PAVARKATTDV
Trigger: CACGTCTGTAGTTGCTTTCCTAGCAACAGCAGGGCAGCTGACACCAAGCACGTTAGGTTTCATCTGCCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR GCA 72 bp TGGTGTATCCGTGAGGTGTTTGCAAGTGGACCATGCTaGCACTGCCTGCTAACCTGTGAACTGAACTGCCGA +
Preference number: 3 (lower is better)
Translates to: WCIREVFASGPC*HCLLTCELNCR
Trigger: TCGGCAGTTCAGTTCACAGGTTAGCAGGCAGTGGCAGCATGGTCCACTTGCAAACACCTCACGGATACACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR GCA 72 bp TGCTGGTGTATCCGTGAGGTGTTTGCAAGTGGACCATaGTGCCACTGCCTGCTAACCTGTGAACTGAACTGC +
Preference number: 3 (lower is better)
Translates to: CWCIREVFASGP*CHCLLTCELNC
Trigger: GCAGTTCAGTTCACAGGTTAGCAGGCAGTGGCAGCATGGTCCACTTGCAAACACCTCACGGATACACCAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR GCA 72 bp AAATGTGTGCTTCCAAGAACTACAGGCTGCCGTGAGTaGTGGGAACCAAACTCGGGTCCTCTGCAACCTGCA +
Preference number: 3 (lower is better)
Translates to: KCVLPRTTGCRE*WEPNSGPLQPA
Trigger: TGCAGGTTGCAGAGGACCCGAGTTTGGTTCCCAGCACTCACGGCAGCCTGTAGTTCTTGGAAGCACACATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR CCA 72 bp ATGCACTGGCAAGCTTGGTGGCTTTTACCAGCTCTCTaGTTTCCTGTCACTGCTGTGTGCTTGGGCCACTAC +
Preference number: 3 (lower is better)
Translates to: MHWQAWWLLPAL*FPVTAVCLGHY
Trigger: GTAGTGGCCCAAGCACACAGCAGTGACAGGAAACCAGAGAGCTGGTAAAAGCCACCAAGCTTGCCAGTGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CCA 72 bp ATCTCCATCCACACCATGAGATCTGTGGCTTCCATCTaGCAAGCCTCCTGTGCATATCAGTGCAGCAGGTCG +
Preference number: 3 (lower is better)
Translates to: ISIHTMRSVASI*QASCAYQCSRS
Trigger: CGACCTGCTGCACTGATATGCACAGGAGGCTTGCCAGATGGAAGCCACAGATCTCATGGTGTGGATGGAGAT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR CAA 90 bp TCACTAGCAGGTGATGCAAGCAGGAGCCTTCATCAGAGATCACACCTGATGGTGGATGCAGGGGGCAACTaGGCTTTGTTTCCTGTAGCC +
Preference number: 3 (lower is better)
Translates to: SLAGDASRSLHQRSHLMVDAGGN*ALFPVA
Trigger: GGCTACAGGAAACAAAGCCAAGTTGCCCCCTGCATC...CACCATCAGGTGTGATCTCTGATGAAGGCTCCTGCTTGCATCACCTGCTAGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR TCA 72 bp GCTGTGTGCTTGGGCCACTACGATATCACTAGCAGGTaGTGCAAGCAGGAGCCTTCATCAGAGATCACACCT +
Preference number: 3 (lower is better)
Translates to: AVCLGHYDITSR*CKQEPSSEITP
Trigger: AGGTGTGATCTCTGATGAAGGCTCCTGCTTGCATCACCTGCTAGTGATATCGTAGTGGCCCAAGCACACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 72 bp ACATGGCCACAGGTACGGCCTAGGCAAGCAGCCCAGTaGTTTAGTTGTGTCTCGTTAAATAAAGCCTGCACC +
Preference number: 3 (lower is better)
Translates to: TWPQVRPRQAAQ*FSCVSLNKACT
Trigger: GGTGCAGGCTTTATTTAACGAGACACAACTAAAGCACTGGGCTGCTTGCCTAGGCCGTACCTGTGGCCATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR-3UTR CAA 90 bp AGACTGGAGTTGCTTTCTAAACAGGTCCACTTCCCCCACCCCCATCCTTTCTTTACAGGGCAGAAGAGGTaGTGGCCAGGGCAGATGAAA +
Preference number: 3 (lower is better)
Translates to: RLELLSKQVHFPHPHPFFTGQKR*WPGQMK
Trigger: TTTCATCTGCCCTGGCCACAACCTCTTCTGCCCTGT...AAAGAAAGGATGGGGGTGGGGGAAGTGGACCTGTTTAGAAAGCAACTCCAGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR CAA 90 bp GGGCCTGCTCCGGGTGTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCTTCCAGTCTGTCCTTaGTTGAGATGGTCTCTTCCA +
Preference number: 3 (lower is better)
Translates to: GPAPGVVRTHSPLWSLQFLPVCP*LRWSLP
Trigger: TGGAAGAGACCATCTCAACAAAGGACAGACTGGAAG...AAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTACACCCGGAGCAGGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137064.8
3UTR TCA 72 bp GTGATGCAAGCAGGAGCCTTCATCAGAGATCACACCTaGTGGTGTAGCCAGGTCCCAGACTTTCAGCTTTCA +
Preference number: 3 (lower is better)
Translates to: VMQAGAFIRDHT*WCSQVPDFQLS
Trigger: TGAAAGCTGAAAGTCTGGGACCTGGCTACACCATCAGGTGTGATCTCTGATGAAGGCTCCTGCTTGCATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR TCA 72 bp TGCAAGTGGACCATGCTGCCACTGCCTGCTAACCTGTaGACTGAACTGCCGATTTCCAGATTTCCAGACAAC +
Preference number: 3 (lower is better)
Translates to: CKWTMLPLPANL*TELPISRFPDN
Trigger: GTTGTCTGGAAATCTGGAAATCGGCAGTTCAGTTCACAGGTTAGCAGGCAGTGGCAGCATGGTCCACTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR TCA 72 bp TTCGCTGAAGCAGACACAGGAGAGGGGATGCTCTGCTaGAGCAAGCTCGTGAAAGGACACGTGATAAGGATT +
Preference number: 3 (lower is better)
Translates to: FAEADTGEGMLC*SKLVKGHVIRI
Trigger: AATCCTTATCACGTGTCCTTTCACGAGCTTGCTTCAGCAGAGCATCCCCTCTCCTGTGTCTGCTTCAGCGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR GCA 72 bp CCGATTTCCAGATTTCCAGACAACACAGACTGGAGTTaGTTTCTAAACAGGTCCACTTCCCCCACCCCCATC +
Preference number: 3 (lower is better)
Translates to: PISRFPDNTDWS*FLNRSTSPTPI
Trigger: GATGGGGGTGGGGGAAGTGGACCTGTTTAGAAAGCAACTCCAGTCTGTGTTGTCTGGAAATCTGGAAATCGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR CCA 72 bp TGTCTAGCAGAGACTGTCCTCCCCTCAAAAATCAATTaGCGCACACCTTTAATCCCAGCACTTGGGAGGCAG +
Preference number: 3 (lower is better)
Translates to: CLAETVLPSKIN*RTPLIPALGRQ
Trigger: CTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCAATTGATTTTTGAGGGGAGGACAGTCTCTGCTAGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CCA 72 bp TGTCTCAGAGGGACCCACACCAGTTCTCTAGCTCGCTaGCCAGGCCAGTATCCAAAAACTCAATTGAACTCT +
Preference number: 3 (lower is better)
Translates to: CLRGTHTSSLAR*PGQYPKTQLNS
Trigger: AGAGTTCAATTGAGTTTTTGGATACTGGCCTGGCCAGCGAGCTAGAGAACTGGTGTGGGTCCCTCTGAGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CCA 72 bp ATTCTCATGGAGCAGGTAAGTTTCAGGGAGAGTAGCTaGCATGCACTGGCAAGCTTGGTGGCTTTTACCAGC +
Preference number: 3 (lower is better)
Translates to: ILMEQVSFRESS*HALASLVAFTS
Trigger: GCTGGTAAAAGCCACCAAGCTTGCCAGTGCATGCCAGCTACTCTCCCTGAAACTTACCTGCTCCATGAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 72 bp TGTGAGAAGAGCCTAGGAGGTACAGAGCACTGGGGGTaGAGGAGTGCTAAAAAGCAAACAATTCTCATGGAG +
Preference number: 3 (lower is better)
Translates to: CEKSLGGTEHWG*RSAKKQTILME
Trigger: CTCCATGAGAATTGTTTGCTTTTTAGCACTCCTGCACCCCCAGTGCTCTGTACCTCCTAGGCTCTTCTCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 72 bp ACCAGGACAGGTCTTGCCACTGTTGACTCGATTTGCTaGATGCATGAAGTGAGCATGATGCTGGAAACAGGA +
Preference number: 3 (lower is better)
Translates to: TRTGLATVDSIC*MHEVSMMLETG
Trigger: TCCTGTTTCCAGCATCATGCTCACTTCATGCATGCAGCAAATCGAGTCAACAGTGGCAAGACCTGTCCTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 72 bp AGGACCAGGACAGGTCTTGCCACTGTTGACTCGATTTaGTGCATGCATGAAGTGAGCATGATGCTGGAAACA +
Preference number: 3 (lower is better)
Translates to: RTRTGLATVDSI*CMHEVSMMLET
Trigger: TGTTTCCAGCATCATGCTCACTTCATGCATGCAGCAAATCGAGTCAACAGTGGCAAGACCTGTCCTGGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 72 bp GCCCAGTGCTTTAGTTGTGTCTCGTTAAATAAAGCCTaGACCGTGGCTGCAGCAAGGCTTCTTGTCCTCTTT +
Preference number: 3 (lower is better)
Translates to: AQCFSCVSLNKA*TVAAARLLVLF
Trigger: AAAGAGGACAAGAAGCCTTGCTGCAGCCACGGTGCAGGCTTTATTTAACGAGACACAACTAAAGCACTGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR CCA 72 bp GAACTGCCGATTTCCAGATTTCCAGACAACACAGACTaGAGTTGCTTTCTAAACAGGTCCACTTCCCCCACC +
Preference number: 3 (lower is better)
Translates to: ELPISRFPDNTD*SCFLNRSTSPT
Trigger: GGTGGGGGAAGTGGACCTGTTTAGAAAGCAACTCCAGTCTGTGTTGTCTGGAAATCTGGAAATCGGCAGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR CCA 72 bp GGGCCAAAAGTATCTTTTTGTGATGGCTTCGGCCTATaGTTGCCATTTGGAACACAAGTCTCAAGCCCTGCC +
Preference number: 3 (lower is better)
Translates to: GPKVSFCDGFGL*LPFGTQVSSPA
Trigger: GGCAGGGCTTGAGACTTGTGTTCCAAATGGCAACCATAGGCCGAAGCCATCACAAAAAGATACTTTTGGCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR-3UTR CAA 90 bp GCTGGCATGCACTGGCAAGCTTGGTGGCTTTTACCAGCTCTCTGGTTTCCTGTCACTGTGTGTGTTTTATaGTCCCCTAACAATTCAACC +
Preference number: 3 (lower is better)
Translates to: AGMHWQAWWLLPALWFPVTVCVL*SPNNST
Trigger: GGTTGAATTGTTAGGGGACAATAAAACACACACAGT...GACAGGAAACCAGAGAGCTGGTAAAAGCCACCAAGCTTGCCAGTGCATGCCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR-3UTR CAA 90 bp CATGAGAAGCACCTCTTGAAACTGAACCCTAAAGGGAATACACACTCCCCTATCGGCTTCGGCCTATGGTaGCCATTTGGAACACAAGTC +
Preference number: 3 (lower is better)
Translates to: HEKHLLKLNPKGNTHSPIGFGLW*PFGTQV
Trigger: GACTTGTGTTCCAAATGGCAACCATAGGCCGAAGCC...GATAGGGGAGTGTGTATTCCCTTTAGGGTTCAGTTTCAAGAGGTGCTTCTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR TCA 72 bp CATGTCTCTCCAAGTGGCTTGAGGCCACTACTTGCATaGCTGATTTCTGGCTCCCAGCATCATTTGTTGTTG +
Preference number: 3 (lower is better)
Translates to: HVSPSGLRPLLA*LISGSQHHLLL
Trigger: CAACAACAAATGATGCTGGGAGCCAGAAATCAGTCATGCAAGTAGTGGCCTCAAGCCACTTGGAGAGACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR TCA 72 bp CTTAAAAGCAAGAAGACCTTCCAGTCTGTCCTTTGTTaGGATGGTCTCTTCCAGAATGTCACTGGGCGTCGG +
Preference number: 3 (lower is better)
Translates to: LKSKKTFQSVLC*DGLFQNVTGRR
Trigger: CCGACGCCCAGTGACATTCTGGAAGAGACCATCTCAACAAAGGACAGACTGGAAGGTCTTCTTGCTTTTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137064.8
3UTR CCA 72 bp GACATTTGTGAGAAGAGCCTAGGAGGTACAGAGCACTaGGGGTGCAGGAGTGCTAAAAAGCAAACAATTCTC +
Preference number: 3 (lower is better)
Translates to: DICEKSLGGTEH*GCRSAKKQTIL
Trigger: GAGAATTGTTTGCTTTTTAGCACTCCTGCACCCCCAGTGCTCTGTACCTCCTAGGCTCTTCTCACAAATGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CCA 72 bp AAGTGGCTTGAGGCCACTACTTGCATGACTGATTTCTaGCTCCCAGCATCATTTGTTGTTGTCAAAGACCCC +
Preference number: 3 (lower is better)
Translates to: KWLEATTCMTDF*LPASFVVVKDP
Trigger: GGGGTCTTTGACAACAACAAATGATGCTGGGAGCCAGAAATCAGTCATGCAAGTAGTGGCCTCAAGCCACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR CCA 72 bp TTATTCCTTGGACCAAGCATATTCAAACCATCACAGTaGGTCACACCCAGTCTCTCTAGGCAGGCCTGTGAT +
Preference number: 3 (lower is better)
Translates to: LFLGPSIFKPSQ*VTPSLSRQACD
Trigger: ATCACAGGCCTGCCTAGAGAGACTGGGTGTGACCCACTGTGATGGTTTGAATATGCTTGGTCCAAGGAATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR CCA 72 bp ACCTCTGAGGACCAAAGTGGAAACTTAAGGGTTCTTTaGAAAGTCGGTTGGATGGTGTTTAGCTGGGGCAGA +
Preference number: 3 (lower is better)
Translates to: TSEDQSGNLRVL*KVGWMVFSWGR
Trigger: TCTGCCCCAGCTAAACACCATCCAACCGACTTTCCAAAGAACCCTTAAGTTTCCACTTTGGTCCTCAGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR GCA 72 bp CACTCACTAAAAACAACTCAAGGAACTCAGGCAATGTaGAGTTCTACCACTGTGGAGGCAAGCCTCAGAAAC +
Preference number: 3 (lower is better)
Translates to: HSLKTTQGTQAM*SSTTVEASLRN
Trigger: GTTTCTGAGGCTTGCCTCCACAGTGGTAGAACTGCACATTGCCTGAGTTCCTTGAGTTGTTTTTAGTGAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CCA 72 bp AGAAATAACAGCCTATGGCATAGTGAAAGCTGTGCCTaGCTTAGACTCCAGGTTTCTGGTACTGAGTCCCAA +
Preference number: 3 (lower is better)
Translates to: RNNSLWHSESCA*LRLQVSGTESQ
Trigger: TTGGGACTCAGTACCAGAAACCTGGAGTCTAAGCCAGGCACAGCTTTCACTATGCCATAGGCTGTTATTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 72 bp GTAAGTGACTTTCTAGCTTCTAAATCCTACAGCAGATaGAGGGGGCAACTTGGCTTTGTTTCCTGTAGCCAT +
Preference number: 3 (lower is better)
Translates to: VSDFLASKSYSR*RGQLGFVSCSH
Trigger: ATGGCTACAGGAAACAAAGCCAAGTTGCCCCCTGCATCTGCTGTAGGATTTAGAAGCTAGAAAGTCACTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 72 bp CAGATACTGCGACTATCTGAAGTACATGATCTGAGGTaGTTCCTAAAATGTGAGGGCATCAAGGAAACCAGC +
Preference number: 3 (lower is better)
Translates to: QILRLSEVHDLR*FLKCEGIKETS
Trigger: GCTGGTTTCCTTGATGCCCTCACATTTTAGGAAGCACCTCAGATCATGTACTTCAGATAGTCGCAGTATCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 72 bp CAAAAGTATCTTTTTGTGATGGCTTCGGCCTATGGTTaGCATTTGGAACACAAGTCTCAAGCCCTGCCATCT +
Preference number: 3 (lower is better)
Translates to: QKYLFVMASAYG*HLEHKSQALPS
Trigger: AGATGGCAGGGCTTGAGACTTGTGTTCCAAATGGCAACCATAGGCCGAAGCCATCACAAAAAGATACTTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR TCA 72 bp TTAGACTCCAGGTTTCTGGTACTGAGTCCCAAGCTTTaGACTCTGGAGTACCTTTTGTTATTCAAAGCAGCC +
Preference number: 3 (lower is better)
Translates to: LDSRFLVLSPKL*TLEYLLLFKAA
Trigger: GGCTGCTTTGAATAACAAAAGGTACTCCAGAGTTCAAAGCTTGGGACTCAGTACCAGAAACCTGGAGTCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CCA 72 bp CCAAGGCAACTCATAAAAACAACACTTAATTGTGCCTaGCTTACAGGTTCAGCCCATTATCATCAAGGTGGG +
Preference number: 3 (lower is better)
Translates to: PRQLIKTTLNCA*LTGSAHYHQGG
Trigger: CCCACCTTGATGATAATGGGCTGAACCTGTAAGCCAGGCACAATTAAGTGTTGTTTTTATGAGTTGCCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR-3UTR CAA 90 bp TGGTTGCCATTTGGAACACAAGTCTCAAGCCCTGCCATCTTACCACAATGTTCTAACCAAGCTGATCTCTaGGTGTTTTGCTTTGTTCTT +
Preference number: 3 (lower is better)
Translates to: WLPFGTQVSSPAILPQCSNQADL*VFCFVL
Trigger: AAGAACAAAGCAAAACACCAAGAGATCAGCTTGGTT...AGAACATTGTGGTAAGATGGCAGGGCTTGAGACTTGTGTTCCAAATGGCAACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR TCA 72 bp CAAATCCTAAGAACAATTCATACTTCTGACCAACCATaGTATAAATGTGGGGTTTCCCTCAAAGCCCTGCCC +
Preference number: 3 (lower is better)
Translates to: QILRTIHTSDQP*YKCGVSLKALP
Trigger: GGGCAGGGCTTTGAGGGAAACCCCACATTTATATCATGGTTGGTCAGAAGTATGAATTGTTCTTAGGATTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR TCA 72 bp TACACTATTACTTCCAGGGCCAAAAGTATCTTTTTGTaGTGGCTTCGGCCTATGGTTGCCATTTGGAACACA +
Preference number: 3 (lower is better)
Translates to: YTITSRAKSIFL*WLRPMVAIWNT
Trigger: TGTGTTCCAAATGGCAACCATAGGCCGAAGCCATCACAAAAAGATACTTTTGGCCCTGGAAGTAATAGTGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR GCA 72 bp AACCATGATATAAATGTGGGGTTTCCCTCAAAGCCCTaGCCAAACTCACTCACTAAAAACAACTCAAGGAAC +
Preference number: 3 (lower is better)
Translates to: NHDINVGFPSKP*PNSLTKNNSRN
Trigger: GTTCCTTGAGTTGTTTTTAGTGAGTGAGTTTGGGCAGGGCTTTGAGGGAAACCCCACATTTATATCATGGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR GCA 72 bp GAAAGGACACGTGATAAGGATTCTTTGCTAATGACATaGGTGTATTGGTCCACCTTACACTGTGTAGTTGAG +
Preference number: 3 (lower is better)
Translates to: ERTRDKDSLLMT*VYWSTLHCVVE
Trigger: CTCAACTACACAGTGTAAGGTGGACCAATACACGCATGTCATTAGCAAAGAATCCTTATCACGTGTCCTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR CCA 72 bp TCTAACAAGGCCACACCTCCTAATAATGTTATTCCTTaGACCAAGCATATTCAAACCATCACAGTGGGTCAC +
Preference number: 3 (lower is better)
Translates to: SNKATPPNNVIP*TKHIQTITVGH
Trigger: GTGACCCACTGTGATGGTTTGAATATGCTTGGTCCAAGGAATAACATTATTAGGAGGTGTGGCCTTGTTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR TCA 72 bp AAAATGATAGACAGACAGATAGACCAACTCACCGACTaGCCAACCATTAAGTTCATTTTGTGTTGGCCAGCT +
Preference number: 3 (lower is better)
Translates to: KMIDRQIDQLTD*PTIKFILCWPA
Trigger: AGCTGGCCAACACAAAATGAACTTAATGGTTGGTCAGTCGGTGAGTTGGTCTATCTGTCTGTCTATCATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR GCA 72 bp AAATGTGAGGGCATCAAGGAAACCAGCTGTATGGACTaGCTTGTGCTAGGAATAAAAATCAGAAATCCACAA +
Preference number: 3 (lower is better)
Translates to: KCEGIKETSCMD*LVLGIKIRNPQ
Trigger: TTGTGGATTTCTGATTTTTATTCCTAGCACAAGGCAGTCCATACAGCTGGTTTCCTTGATGCCCTCACATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
CDS-3UTR GCA 90 bp GCACGGGGTGGCTCTGAACCACTTCCAGCACTATGGGAGGCTGCGGCGGGCTCTCGCCTTCCTGTAGGCTaGATCCCCTTCCTGGTTCTG +
Preference number: 4 (lower is better)
Translates to: ARGGSEPLPALWEAAAGSRLPVG*IPFLVL
Trigger: CAGAACCAGGAAGGGGATGCAGCCTACAGGAAGGCG...AGAGCCCGCCGCAGCCTCCCATAGTGCTGGAAGTGGTTCAGAGCCACCCCGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
3UTR CAA 72 bp GCCTGCTCCGGGTGTAGTGAGAACCCACTCTCCACTTaGGTCACTGCAATTTCCCATGGCAGCACGGGGTGG +
Preference number: 4 (lower is better)
Translates to: ACSGCSENPLST*VTAISHGSTGW
Trigger: CCACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTACACCCGGAGCAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
3UTR CAA 72 bp GATGCTGGGCAGGCGCAGTGCTCTGAGATCAATCACTaGGGTTGTGTGCGGAAAGTGCTGAGTGGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: DAGQAQCSEINH*GCVRKVLSGQA
Trigger: GGCCTGGCCACTCAGCACTTTCCGCACACAACCCAAGTGATTGATCTCAGAGCACTGCGCCTGCCCAGCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
CDS-3UTR CCA 90 bp CGGGGTGGCTCTGAACCACTTCCAGCACTATGGGAGGCTGCGGCGGGCTCTCCTTCACCGATCGGATCTTaGAGACAAAGGGACCAACTT +
Preference number: 4 (lower is better)
Translates to: RGGSEPLPALWEAAAGSPSPIGS*RQRDQL
Trigger: AAGTTGGTCCCTTTGTCTCCAAGATCCGATCGGTGA...AGGAGAGCCCGCCGCAGCCTCCCATAGTGCTGGAAGTGGTTCAGAGCCACCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR GCA 90 bp GCACGGGGTGGCTCTGAACCACTTCCAGCACTATGGGAGGCTGCGGCGGGCTCTCCAACTTCACTGGAATaGATCTTGGCTCGTTCCTTA +
Preference number: 4 (lower is better)
Translates to: ARGGSEPLPALWEAAAGSPTSLE*ILARSL
Trigger: TAAGGAACGAGCCAAGATGCATTCCAGTGAAGTTGG...AGAGCCCGCCGCAGCCTCCCATAGTGCTGGAAGTGGTTCAGAGCCACCCCGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR GCA 90 bp GTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGAAGGCCGTCTATGGCTaGGATGGTGGGCACCGGGAG +
Preference number: 4 (lower is better)
Translates to: VVRTHSPLWSLQFPMAARKAVYG*DGGHRE
Trigger: CTCCCGGTGCCCACCATCGCAGCCATAGACGGCCTT...CCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR GCA 90 bp ATGGTCTCTTCCAGAATGTCACTGGGCGTCGGGAGTCACTCAGTAGCCAGTACTAAGGCCGTCTATGGCTaGGATGGTGGGCACCGGGAG +
Preference number: 4 (lower is better)
Translates to: MVSSRMSLGVGSHSVASTKAVYG*DGGHRE
Trigger: CTCCCGGTGCCCACCATCGCAGCCATAGACGGCCTT...AGTACTGGCTACTGAGTGACTCCCGACGCCCAGTGACATTCTGGAAGAGACCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137064.8
CDS-3UTR CCA 90 bp CGGGGTGGCTCTGAACCACTTCCAGCACTATGGGAGGCTGCGGCGGGCTCTCCTTTCTGTTCTAACACATaGCTGATCAAGCCCACAGCT +
Preference number: 4 (lower is better)
Translates to: RGGSEPLPALWEAAAGSPFCSNT*LIKPTA
Trigger: AGCTGTGGGCTTGATCAGCCATGTGTTAGAACAGAA...AGGAGAGCCCGCCGCAGCCTCCCATAGTGCTGGAAGTGGTTCAGAGCCACCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
3UTR CAA 72 bp AGATGCAGAGGGAGGCTGCCACAGGCCTCTCCCGACTaGCTTCTGGGCTCAGGAGACAGCTTCAAAGGTTCA +
Preference number: 4 (lower is better)
Translates to: RCRGRLPQASPD*LLGSGDSFKGS
Trigger: TGAACCTTTGAAGCTGTCTCCTGAGCCCAGAAGCAAGTCGGGAGAGGCCTGTGGCAGCCTCCCTCTGCATCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
CDS-3UTR GCA 90 bp GCACGGGGTGGCTCTGAACCACTTCCAGCACTATGGGAGGCTGCGGCGGGCTCTTCCGCCAGGAATAATTaGCAACTTTGTTTCAACCAG +
Preference number: 4 (lower is better)
Translates to: ARGGSEPLPALWEAAAGSSARNN*QLCFNQ
Trigger: CTGGTTGAAACAAAGTTGGCAATTATTCCTGGCGGA...AGAGCCCGCCGCAGCCTCCCATAGTGCTGGAAGTGGTTCAGAGCCACCCCGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR CCA 90 bp GTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGCGTCTATGGCTGCGATaGTGGGCACCGGGAGGTTTG +
Preference number: 4 (lower is better)
Translates to: VVRTHSPLWSLQFPMAARRLWLR*WAPGGL
Trigger: CAAACCTCCCGGTGCCCACCATCGCAGCCATAGACG...CCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR CCA 90 bp TCACTGGGCGTCGGGAGTCACTCAGTAGCCAGTACTTTCAGACTGAAACCTTCCCGTCTATGGCTGCGATaGTGGGCACCGGGAGGTTTG +
Preference number: 4 (lower is better)
Translates to: SLGVGSHSVASTFRLKPSRLWLR*WAPGGL
Trigger: CAAACCTCCCGGTGCCCACCATCGCAGCCATAGACG...GGAAGGTTTCAGTCTGAAAGTACTGGCTACTGAGTGACTCCCGACGCCCAGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137064.8
3UTR CAA 72 bp GGGTGGGCCTTCACACCTCAATTTAACCAAACAAGATaGCCCCTCACAGGCCTGCCCTTCCGTGGGCTCTAC +
Preference number: 4 (lower is better)
Translates to: GWAFTPQFNQTR*PLTGLPFRGLY
Trigger: GTAGAGCCCACGGAAGGGCAGGCCTGTGAGGGGCAATCTTGTTTGGTTAAATTGAGGTGTGAAGGCCCACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
CDS-3UTR GCA 90 bp CCGGGTGTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCACGCCTTCCTGTAGGCTaGATCCCCTTCCTGGTTCTG +
Preference number: 4 (lower is better)
Translates to: PGVVRTHSPLWSLQFPMARLPVG*IPFLVL
Trigger: CAGAACCAGGAAGGGGATGCAGCCTACAGGAAGGCG...TGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTACACCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR TCA 90 bp CACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGGGTGGCTCTGAAACAGCTTTGGCTTCTTaGCCGTCAAGAACTCGGGCA +
Preference number: 4 (lower is better)
Translates to: HSPLWSLQFPMAARGGSETALAS*PSRTRA
Trigger: TGCCCGAGTTCTTGACGGTCAAGAAGCCAAAGCTGT...TTCAGAGCCACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR TCA 90 bp ACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGGGTGGCTCTGTTCTAACACATGGCTaGTCAAGCCCACAGCTTTGG +
Preference number: 4 (lower is better)
Translates to: THSPLWSLQFPMAARGGSVLTHG*SSPQLW
Trigger: CCAAAGCTGTGGGCTTGATCAGCCATGTGTTAGAAC...AGAGCCACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR CCA 90 bp AGACTCCAGAAAGATGCAGAGGGAGGCTGCCACAGGCCTCTCCCGACTTGCTTCTCACCGATCGGATCTTaGAGACAAAGGGACCAACTT +
Preference number: 4 (lower is better)
Translates to: RLQKDAEGGCHRPLPTCFSPIGS*RQRDQL
Trigger: AAGTTGGTCCCTTTGTCTCCAAGATCCGATCGGTGA...GAAGCAAGTCGGGAGAGGCCTGTGGCAGCCTCCCTCTGCATCTTTCTGGAGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
CDS-3UTR TCA 90 bp GGGTGTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACAGCTTTGGCTTCTTaGCCGTCAAGAACTCGGGCA +
Preference number: 4 (lower is better)
Translates to: GCSENPLSTLVTAISHGSTALAS*PSRTRA
Trigger: TGCCCGAGTTCTTGACGGTCAAGAAGCCAAAGCTGT...GCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTACACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR TCA 90 bp GGGCCTGCTCCGGGTGTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTGTTCTAACACATGGCTaGTCAAGCCCACAGCTTTGG +
Preference number: 4 (lower is better)
Translates to: GPAPGVVRTHSPLWSLQFVLTHG*SSPQLW
Trigger: CCAAAGCTGTGGGCTTGATCAGCCATGTGTTAGAAC...AAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTACACCCGGAGCAGGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR CCA 90 bp GGCGTCGGGAGTCACTCAGTAGCCAGTACTTTCAGACTGAAACCTTCCCTGGAGGCTGCATCCCCTTCCTaGTTCTGTTCTAACACATGG +
Preference number: 4 (lower is better)
Translates to: GVGSHSVASTFRLKPSLEAASPS*FCSNTW
Trigger: CCATGTGTTAGAACAGAACCAGGAAGGGGATGCAGC...CTCCAGGGAAGGTTTCAGTCTGAAAGTACTGGCTACTGAGTGACTCCCGACGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137064.8
CDS-3UTR GCA 90 bp ATGGTCTCTTCCAGAATGTCACTGGGCGTCGGGAGTCACTCAGTAGCCAGTACTAACCAGGCCCATTTTTaGAGAGGAAGCTGCTACTCG +
Preference number: 4 (lower is better)
Translates to: MVSSRMSLGVGSHSVASTNQAHF*RGSCYS
Trigger: CGAGTAGCAGCTTCCTCTGCAAAAATGGGCCTGGTT...AGTACTGGCTACTGAGTGACTCCCGACGCCCAGTGACATTCTGGAAGAGACCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000137064.8
CDS-3UTR CCA 90 bp CACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGGGTGGCTCTGAAAGGGACCAACTTCACTaGAATGCATCTTGGCTCGTT +
Preference number: 4 (lower is better)
Translates to: HSPLWSLQFPMAARGGSERDQLH*NASWLV
Trigger: AACGAGCCAAGATGCATTCCAGTGAAGTTGGTCCCT...TTCAGAGCCACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR CCA 90 bp GGGTGTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCGCTGCATCCCCTTCCTaGTTCTGTTCTAACACATGG +
Preference number: 4 (lower is better)
Translates to: GCSENPLSTLVTAISHGSAASPS*FCSNTW
Trigger: CCATGTGTTAGAACAGAACCAGGAAGGGGATGCAGC...GCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTACACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR GCA 90 bp TGCTCCGGGTGTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATAACCAGGCCCATTTTTaGAGAGGAAGCTGCTACTCG +
Preference number: 4 (lower is better)
Translates to: CSGCSENPLSTLVTAISHNQAHF*RGSCYS
Trigger: CGAGTAGCAGCTTCCTCTGCAAAAATGGGCCTGGTT...ATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTACACCCGGAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR GCA 90 bp GCTGGCATGCACTGGCAAGCTTGGTGGCTTTTACCAGCTCTCTGGTTTCCTGTCCGGCCACCAAAAAGGTaGAAATTGGAAACAAAGCTG +
Preference number: 4 (lower is better)
Translates to: AGMHWQAWWLLPALWFPVRPPKR*KLETKL
Trigger: CAGCTTTGTTTCCAATTTGCACCTTTTTGGTGGCCG...GACAGGAAACCAGAGAGCTGGTAAAAGCCACCAAGCTTGCCAGTGCATGCCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
CDS-3UTR CCA 90 bp TTGGTGACTCTGGCTCTGGCTGTGTGTCCCTCACACAGATTCATGAGAAGCACCAGGGACCAACTTCACTaGAATGCATCTTGGCTCGTT +
Preference number: 4 (lower is better)
Translates to: LVTLALAVCPSHRFMRSTRDQLH*NASWLV
Trigger: AACGAGCCAAGATGCATTCCAGTGAAGTTGGTCCCT...GGTGCTTCTCATGAATCTGTGTGAGGGACACACAGCCAGAGCCAGAGTCACCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
CDS-3UTR CCA 90 bp GTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGTCGACCTCCATCCCTTaGTTAATTGCTAGTTTGGCC +
Preference number: 4 (lower is better)
Translates to: VVRTHSPLWSLQFPMAARSTSIP*LIASLA
Trigger: GGCCAAACTAGCAATTAACCAAGGGATGGAGGTCGA...CCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR CCA 90 bp CACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGGGTGGCTCTGAATGTCCTTTGTTGAGATaGTCTGAGCATAGCAGGCTT +
Preference number: 4 (lower is better)
Translates to: HSPLWSLQFPMAARGGSECPLLR*SEHSRL
Trigger: AAGCCTGCTATGCTCAGACCATCTCAACAAAGGACA...TTCAGAGCCACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021913.16
3UTR CAA 72 bp CTGTCTAGCAGAGACTGTCCTCCCCTCAAAAATCAATaGGCGCACACCTTTAATCCCAGCACTTGGGAGGCA +
Preference number: 4 (lower is better)
Translates to: LSSRDCPPLKNQ*AHTFNPSTWEA
Trigger: TGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCAATTGATTTTTGAGGGGAGGACAGTCTCTGCTAGACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CAA 72 bp GACTTCTGTGGAGGTGAGAAAGGACCAGGACAGGTCTaGCCACTGTTGACTCGATTTGCTGCATGCATGAAG +
Preference number: 4 (lower is better)
Translates to: DFCGGEKGPGQV*PLLTRFAACMK
Trigger: CTTCATGCATGCAGCAAATCGAGTCAACAGTGGCAAGACCTGTCCTGGTCCTTTCTCACCTCCACAGAAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110031.4
ENSMUST00000230563.2
3UTR CAA 72 bp GCCGATTTCCAGATTTCCAGACAACACAGACTGGAGTaGCTTTCTAAACAGGTCCACTTCCCCCACCCCCAT +
Preference number: 4 (lower is better)
Translates to: ADFQISRQHRLE*LSKQVHFPHPH
Trigger: ATGGGGGTGGGGGAAGTGGACCTGTTTAGAAAGCAACTCCAGTCTGTGTTGTCTGGAAATCTGGAAATCGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
CDS-3UTR GCA 90 bp CACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGGGTGGCTCTGAATCCGCCAGGAATAATTaGCAACTTTGTTTCAACCAG +
Preference number: 4 (lower is better)
Translates to: HSPLWSLQFPMAARGGSESARNN*QLCFNQ
Trigger: CTGGTTGAAACAAAGTTGGCAATTATTCCTGGCGGA...TTCAGAGCCACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR CCA 90 bp TCTTCCAGAATGTCACTGGGCGTCGGGAGTCACTCAGTAGCCAGTACTTTCAGAAGGGACCAACTTCACTaGAATGCATCTTGGCTCGTT +
Preference number: 4 (lower is better)
Translates to: SSRMSLGVGSHSVASTFRRDQLH*NASWLV
Trigger: AACGAGCCAAGATGCATTCCAGTGAAGTTGGTCCCT...TCTGAAAGTACTGGCTACTGAGTGACTCCCGACGCCCAGTGACATTCTGGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137064.8
CDS-3UTR CCA 90 bp TGTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGTCGACCTCCATCCCTTaGTTAATTGCTAGTTTGGCC +
Preference number: 4 (lower is better)
Translates to: CSENPLSTLVTAISHGSTSTSIP*LIASLA
Trigger: GGCCAAACTAGCAATTAACCAAGGGATGGAGGTCGA...CGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR CCA 90 bp CCTGCTCCGGGTGTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCAGCAGGCTTCTTCTATaGCTAACCCTGTTACTAAGT +
Preference number: 4 (lower is better)
Translates to: PAPGVVRTHSPLWSLQFPSRLLL*LTLLLS
Trigger: ACTTAGTAACAGGGTTAGCCATAGAAGAAGCCTGCT...GGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTACACCCGGAGCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR CCA 90 bp TCTTCCAGAATGTCACTGGGCGTCGGGAGTCACTCAGTAGCCAGTACTTTCAGATTCTGTTCTAACACATaGCTGATCAAGCCCACAGCT +
Preference number: 4 (lower is better)
Translates to: SSRMSLGVGSHSVASTFRFCSNT*LIKPTA
Trigger: AGCTGTGGGCTTGATCAGCCATGTGTTAGAACAGAA...TCTGAAAGTACTGGCTACTGAGTGACTCCCGACGCCCAGTGACATTCTGGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137064.8
CDS-3UTR CCA 90 bp GGGTGTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCAGCAGGCTTCTTCTATaGCTAACCCTGTTACTAAGT +
Preference number: 4 (lower is better)
Translates to: GCSENPLSTLVTAISHGSSRLLL*LTLLLS
Trigger: ACTTAGTAACAGGGTTAGCCATAGAAGAAGCCTGCT...GCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTACACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR TCA 90 bp AAACAGGAAGGCAAAGATGCTGGGAAACACAGCTCCCTCGCAGATACTGCGACTATGTCAGCCTTCAGCTaGAAAGAAACAGCACAGAAT +
Preference number: 4 (lower is better)
Translates to: KQEGKDAGKHSSLADTATMSAFS*KETAQN
Trigger: ATTCTGTGCTGTTTCTTTTCAGCTGAAGGCTGACAT...AGTCGCAGTATCTGCGAGGGAGCTGTGTTTCCCAGCATCTTTGCCTTCCTGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
CDS-3UTR CCA 90 bp TTCCGTGGGCTCTACACCCTATCTATCACGTGGACTGTCAGCACGGCTGTCTCACAAAAAGGTGCAAATTaGAAACAAAGCTGGATGTCA +
Preference number: 4 (lower is better)
Translates to: FRGLYTLSITWTVSTAVSQKGAN*KQSWMS
Trigger: TGACATCCAGCTTTGTTTCCAATTTGCACCTTTTTG...TGAGACAGCCGTGCTGACAGTCCACGTGATAGATAGGGTGTAGAGCCCACGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
CDS-3UTR GCA 90 bp GTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGGGTGAGATTTTTACTGAGTaGATTTTTCCCATAAGCTCT +
Preference number: 4 (lower is better)
Translates to: VRTHSPLWSLQFPMAARGEIFTE*IFPISS
Trigger: AGAGCTTATGGGAAAAATGCACTCAGTAAAAATCTC...ACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000021913.16
3UTR CAA 72 bp ATAAATCTGAATAAATATGACATGGCGCACAGTGGCTaGAGTACAGATGGGCCTGCTCCGGGTGTAGTGAGA +
Preference number: 4 (lower is better)
Translates to: INLNKYDMAHSG*STDGPAPGVVR
Trigger: TCTCACTACACCCGGAGCAGGCCCATCTGTACTCAAGCCACTGTGCGCCATGTCATATTTATTCAGATTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
3UTR CAA 72 bp CTAAATCCTACAGCAGATGCAGGGGGCAACTTGGCTTaGTTTCCTGTAGCCATGATAAAATGCCTCGAGGAA +
Preference number: 4 (lower is better)
Translates to: LNPTADAGGNLA*FPVAMIKCLEE
Trigger: TTCCTCGAGGCATTTTATCATGGCTACAGGAAACAAAGCCAAGTTGCCCCCTGCATCTGCTGTAGGATTTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CAA 72 bp TATCTTTTTGTGATGGCTTCGGCCTATGGTTGCCATTaGGAACACAAGTCTCAAGCCCTGCCATCTTACCAC +
Preference number: 4 (lower is better)
Translates to: YLFVMASAYGCH*EHKSQALPSYH
Trigger: GTGGTAAGATGGCAGGGCTTGAGACTTGTGTTCCAAATGGCAACCATAGGCCGAAGCCATCACAAAAAGATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
3UTR CAA 72 bp CCAAAAGTATCTTTTTGTGATGGCTTCGGCCTATGGTaGCCATTTGGAACACAAGTCTCAAGCCCTGCCATC +
Preference number: 4 (lower is better)
Translates to: PKVSFCDGFGLW*PFGTQVSSPAI
Trigger: GATGGCAGGGCTTGAGACTTGTGTTCCAAATGGCAACCATAGGCCGAAGCCATCACAAAAAGATACTTTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
CDS-3UTR TCA 90 bp ATAACTCGATGGGAGGAAAGTCATTTCAACAAATGGCTGCTAGAAAAATTCAATGGCTTCTGTGAGCTGTaGCTCTGGAGCGGCCACCAA +
Preference number: 4 (lower is better)
Translates to: ITRWEESHFNKWLLEKFNGFCEL*LWSGHQ
Trigger: TTGGTGGCCGCTCCAGAGTCACAGCTCACAGAAGCC...ATTGAATTTTTCTAGCAGCCATTTGTTGAAATGACTTTCCTCCCATCGAGTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
CDS-3UTR GCA 90 bp TCACTAGCAGGTGATGCAAGCAGGAGCCTTCATCAGAGATCACACCTGATGGTGGAGATTTTTACTGAGTaGATTTTTCCCATAAGCTCT +
Preference number: 4 (lower is better)
Translates to: SLAGDASRSLHQRSHLMVEIFTE*IFPISS
Trigger: AGAGCTTATGGGAAAAATGCACTCAGTAAAAATCTC...CACCATCAGGTGTGATCTCTGATGAAGGCTCCTGCTTGCATCACCTGCTAGTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CAA 72 bp CTTAGACTCCAGGTTTCTGGTACTGAGTCCCAAGCTTaGAACTCTGGAGTACCTTTTGTTATTCAAAGCAGC +
Preference number: 4 (lower is better)
Translates to: LRLQVSGTESQA*NSGVPFVIQSS
Trigger: GCTGCTTTGAATAACAAAAGGTACTCCAGAGTTCAAAGCTTGGGACTCAGTACCAGAAACCTGGAGTCTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
3UTR CAA 72 bp GAGTTAGAAGTTAATGACAGCCAATCAATTACTTCCTaGGAACCGATGGGAATCCTAGCAGGATCGACGGAA +
Preference number: 4 (lower is better)
Translates to: ELEVNDSQSITS*EPMGILAGSTE
Trigger: TTCCGTCGATCCTGCTAGGATTCCCATCGGTTCCAAGGAAGTAATTGATTGGCTGTCATTAACTTCTAACTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR CAA 72 bp AAGCAAGCTCGTGAAAGGACACGTGATAAGGATTCTTaGCTAATGACATGCGTGTATTGGTCCACCTTACAC +
Preference number: 4 (lower is better)
Translates to: KQARERTRDKDS*LMTCVYWSTLH
Trigger: GTGTAAGGTGGACCAATACACGCATGTCATTAGCAAAGAATCCTTATCACGTGTCCTTTCACGAGCTTGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
CDS-3UTR GCA 90 bp CCAGTGACACTCTGCTATAGGAAACTGATTTCTTCTTTCCCATCAGGTATCGACGAGATTTTTACTGAGTaGATTTTTCCCATAAGCTCT +
Preference number: 4 (lower is better)
Translates to: PVTLCYRKLISSFPSGIDEIFTE*IFPISS
Trigger: AGAGCTTATGGGAAAAATGCACTCAGTAAAAATCTC...GTCGATACCTGATGGGAAAGAAGAAATCAGTTTCCTATAGCAGAGTGTCACTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
CDS-3UTR GCA 90 bp ACTACTTGCATGACTGATTTCTGGCTCCCAGCATCATTTGTTGTTGTCAAAGACGAGATTTTTACTGAGTaGATTTTTCCCATAAGCTCT +
Preference number: 4 (lower is better)
Translates to: TTCMTDFWLPASFVVVKDEIFTE*IFPISS
Trigger: AGAGCTTATGGGAAAAATGCACTCAGTAAAAATCTC...GTCTTTGACAACAACAAATGATGCTGGGAGCCAGAAATCAGTCATGCAAGTAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000119311.8
3UTR CAA 72 bp GGCAGAAAGGATATACACATAACTGTTGTAACAAGTTaGCAAATTCAACTCATGCTGATGAGGGTTTTGTGG +
Preference number: 4 (lower is better)
Translates to: GRKDIHITVVTS*QIQLMLMRVLW
Trigger: CCACAAAACCCTCATCAGCATGAGTTGAATTTGCAAACTTGTTACAACAGTTATGTGTATATCCTTTCTGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
CDS-3UTR CAA 90 bp GCTGTTCCTGGGCATGGGGCCTGCCCTGGTGTGTGTCCGGTGTGCCCAGTGACAATCACCGATCGGATCTaGGAGACAAAGGGACCAACT +
Preference number: 5 (lower is better)
Translates to: AVPGHGACPGVCPVCPVTITDRI*ETKGPT
Trigger: AGTTGGTCCCTTTGTCTCCAAGATCCGATCGGTGAT...TGTCACTGGGCACACCGGACACACACCAGGGCAGGCCCCATGCCCAGGAACAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
CDS-3UTR CAA 90 bp CGGGGTGGCTCTGAACCACTTCCAGCACTATGGGAGGCTGCGGCGGGCTCTCCTATCACCGATCGGATCTaGGAGACAAAGGGACCAACT +
Preference number: 5 (lower is better)
Translates to: RGGSEPLPALWEAAAGSPITDRI*ETKGPT
Trigger: AGTTGGTCCCTTTGTCTCCAAGATCCGATCGGTGAT...AGGAGAGCCCGCCGCAGCCTCCCATAGTGCTGGAAGTGGTTCAGAGCCACCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR CAA 90 bp GTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGGGTGTTTGGCCACTCTCATaGCAACAGGCCCCTGAGGTA +
Preference number: 5 (lower is better)
Translates to: VRTHSPLWSLQFPMAARGVWPLS*QQAPEV
Trigger: TACCTCAGGGGCCTGTTGCAATGAGAGTGGCCAAAC...ACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS TCA 90 bp CGTCTATGGCTGCGATGGTGGGCACCGGGAGGTTTGCAATGTCATTaGTCACCGATCGGATCTTGGAGACAAAGGGACCAACTTCACTGG +
Preference number: 5 (lower is better)
Translates to: RLWLRWWAPGGLQCH*SPIGSWRQRDQLHW
Trigger: CCAGTGAAGTTGGTCCCTTTGTCTCCAAGATCCGATCGGTGATCAATGACATTGCAAACCTCCCGGTGCCCACCATCGCAGCCATAGACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021913.16
ENSMUST00000123599.8
ENSMUST00000137064.8
CDS TCA 90 bp GGAGAGCACCGGGAGTCAGGAGTCACTTCTGGCTTCTGTGAGCTGTaGCTCTGGAGCGGCCACCAAAAAGGTGCAAATTGGAAACAAAGC +
Preference number: 5 (lower is better)
Translates to: GEHRESGVTSGFCEL*LWSGHQKGANWKQS
Trigger: GCTTTGTTTCCAATTTGCACCTTTTTGGTGGCCGCTCCAGAGTCACAGCTCACAGAAGCCAGAAGTGACTCCTGACTCCCGGTGCTCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
CDS-3UTR CAA 90 bp GAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGGGTGGCTCCAGTCTGTCCTTTGTaGAGATGGTCTGAGCATAGC +
Preference number: 5 (lower is better)
Translates to: EPTLHFGHCNFPWQHGVAPVCPL*RWSEHS
Trigger: GCTATGCTCAGACCATCTCAACAAAGGACAGACTGG...AGCCACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021913.16
CDS-3UTR CAA 90 bp ACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGGGTGGCTCTTCACTGGAATGCATCTaGGCTCGTTCCTTAAGGTCA +
Preference number: 5 (lower is better)
Translates to: THSPLWSLQFPMAARGGSSLECI*ARSLRS
Trigger: TGACCTTAAGGAACGAGCCAAGATGCATTCCAGTGA...AGAGCCACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR CAA 90 bp GGGCCTGCTCCGGGTGTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTATCACCGATCGGATCTaGGAGACAAAGGGACCAACT +
Preference number: 5 (lower is better)
Translates to: GPAPGVVRTHSPLWSLQFITDRI*ETKGPT
Trigger: AGTTGGTCCCTTTGTCTCCAAGATCCGATCGGTGAT...AAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTACACCCGGAGCAGGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR CAA 90 bp GGGTGTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCCAACCAGGCCCATTTTaGCAGAGGAAGCTGCTACTC +
Preference number: 5 (lower is better)
Translates to: GCSENPLSTLVTAISHGSQPGPF*QRKLLL
Trigger: GAGTAGCAGCTTCCTCTGCAAAAATGGGCCTGGTTG...GCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTACACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR CAA 90 bp TCACTGGGCGTCGGGAGTCACTCAGTAGCCAGTACTTTCAGACTGAAACCTTCCCAACCAGGCCCATTTTaGCAGAGGAAGCTGCTACTC +
Preference number: 5 (lower is better)
Translates to: SLGVGSHSVASTFRLKPSQPGPF*QRKLLL
Trigger: GAGTAGCAGCTTCCTCTGCAAAAATGGGCCTGGTTG...GGAAGGTTTCAGTCTGAAAGTACTGGCTACTGAGTGACTCCCGACGCCCAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137064.8
CDS-3UTR CAA 90 bp TGTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGTTTGGCCACTCTCATaGCAACAGGCCCCTGAGGTA +
Preference number: 5 (lower is better)
Translates to: CSENPLSTLVTAISHGSTVWPLS*QQAPEV
Trigger: TACCTCAGGGGCCTGTTGCAATGAGAGTGGCCAAAC...CGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS-3UTR CAA 90 bp ACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCACGGGGTGGCTCTCTTCCAGTCTGTCCTTaGTTGAGATGGTCTGAGCAT +
Preference number: 5 (lower is better)
Translates to: THSPLWSLQFPMAARGGSLPVCP*LRWSEH
Trigger: ATGCTCAGACCATCTCAACAAAGGACAGACTGGAAG...AGAGCCACCCCGTGCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021913.16
CDS TCA 90 bp TTCTGTTCTAACACATGGCTGATCAAGCCCACAGCTTTGGCTTCTTaGCCGTCAAGAACTCGGGCAGAGAAGATGAGTTCCTTAGCCAGG +
Preference number: 5 (lower is better)
Translates to: FCSNTWLIKPTALAS*PSRTRAEKMSSLAR
Trigger: CCTGGCTAAGGAACTCATCTTCTCTGCCCGAGTTCTTGACGGTCAAGAAGCCAAAGCTGTGGGCTTGATCAGCCATGTGTTAGAACAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021913.16
ENSMUST00000123599.8
ENSMUST00000137064.8
CDS-3UTR CAA 90 bp CTTTCTGTTGGTGACTCTGGCTCTGGCTGTGTGTCCCTCACACAGATTCATGAGTCACTGGAATGCATCTaGGCTCGTTCCTTAAGGTCA +
Preference number: 5 (lower is better)
Translates to: LSVGDSGSGCVSLTQIHESLECI*ARSLRS
Trigger: TGACCTTAAGGAACGAGCCAAGATGCATTCCAGTGA...CTCATGAATCTGTGTGAGGGACACACAGCCAGAGCCAGAGTCACCAACAGAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120535.8
CDS-3UTR CAA 90 bp GGGTGTAGTGAGAACCCACTCTCCACTTTGGTCACTGCAATTTCCCATGGCAGCTGGTTAATTGCTAGTTaGGCCACTCTCATTGCAACA +
Preference number: 5 (lower is better)
Translates to: GCSENPLSTLVTAISHGSWLIAS*ATLIAT
Trigger: TGTTGCAATGAGAGTGGCCAAACTAGCAATTAACCA...GCTGCCATGGGAAATTGCAGTGACCAAAGTGGAGAGTGGGTTCTCACTACACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021913.16
ENSMUST00000137064.8
CDS TCA 90 bp CAAAAAGGTGCAAATTGGAAACAAAGCTGGATGTCAGCCTTCAGCTaGAAAGAAACAGCACAGAATATCCCAGGGACTTCACTTCTGATG +
Preference number: 5 (lower is better)
Translates to: QKGANWKQSWMSAFS*KETAQNIPGTSLLM
Trigger: CATCAGAAGTGAAGTCCCTGGGATATTCTGTGCTGTTTCTTTTCAGCTGAAGGCTGACATCCAGCTTTGTTTCCAATTTGCACCTTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
CDS GCA 72 bp CTCCAGACCCCCTCCGAGGGCAAGGCCGTCTATGGCTaGGATGGTGGGCACCGGGAGGTTTGCAATGTCATT +
Preference number: 6 (lower is better)
Translates to: LQTPSEGKAVYG*DGGHREVCNVI
Trigger: AATGACATTGCAAACCTCCCGGTGCCCACCATCGCAGCCATAGACGGCCTTGCCCTCGGAGGGGGTCTGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021913.16
ENSMUST00000123599.8
ENSMUST00000137064.8
CDS TCA 72 bp AGAGCACCGGGAGTCAGGAGTCACTTCTGGCTTCTGTaGGCTGTGACTCTGGAGCGGCCACCAAAAAGGTGC +
Preference number: 6 (lower is better)
Translates to: RAPGVRSHFWLL*AVTLERPPKRC
Trigger: GCACCTTTTTGGTGGCCGCTCCAGAGTCACAGCTCACAGAAGCCAGAAGTGACTCCTGACTCCCGGTGCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
CDS TCA 72 bp CGGGAGTCAGGAGTCACTTCTGGCTTCTGTGAGCTGTaGCTCTGGAGCGGCCACCAAAAAGGTGCAAATTGG +
Preference number: 6 (lower is better)
Translates to: RESGVTSGFCEL*LWSGHQKGANW
Trigger: CCAATTTGCACCTTTTTGGTGGCCGCTCCAGAGTCACAGCTCACAGAAGCCAGAAGTGACTCCTGACTCCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4
CDS CAA 90 bp CCGTCTATGGCTGCGATGGTGGGCACCGGGAGGTTTGCAATGTCATaGATCACCGATCGGATCTTGGAGACAAAGGGACCAACTTCACTG +
Preference number: 6 (lower is better)
Translates to: PSMAAMVGTGRFAMS*ITDRILETKGPTSL
Trigger: CAGTGAAGTTGGTCCCTTTGTCTCCAAGATCCGATCGGTGATCAATGACATTGCAAACCTCCCGGTGCCCACCATCGCAGCCATAGACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021913.16
ENSMUST00000123599.8
ENSMUST00000137064.8
CDS TCA 72 bp CTGCGATGGTGGGCACCGGGAGGTTTGCAATGTCATTaGTCACCGATCGGATCTTGGAGACAAAGGGACCAA +
Preference number: 6 (lower is better)
Translates to: LRWWAPGGLQCH*SPIGSWRQRDQ
Trigger: TTGGTCCCTTTGTCTCCAAGATCCGATCGGTGATCAATGACATTGCAAACCTCCCGGTGCCCACCATCGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021913.16
ENSMUST00000123599.8
ENSMUST00000137064.8
CDS CAA 90 bp GTGGGCACCGGGAGGTTTGCAATGTCATTGATCACCGATCGGATCTaGGAGACAAAGGGACCAACTTCACTGGAATGCATCTTGGCTCGT +
Preference number: 6 (lower is better)
Translates to: VGTGRFAMSLITDRI*ETKGPTSLECILAR
Trigger: ACGAGCCAAGATGCATTCCAGTGAAGTTGGTCCCTTTGTCTCCAAGATCCGATCGGTGATCAATGACATTGCAAACCTCCCGGTGCCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021913.16
ENSMUST00000123599.8
ENSMUST00000137064.8
CDS TCA 72 bp AACACATGGCTGATCAAGCCCACAGCTTTGGCTTCTTaGCCGTCAAGAACTCGGGCAGAGAAGATGAGTTCC +
Preference number: 6 (lower is better)
Translates to: NTWLIKPTALAS*PSRTRAEKMSS
Trigger: GGAACTCATCTTCTCTGCCCGAGTTCTTGACGGTCAAGAAGCCAAAGCTGTGGGCTTGATCAGCCATGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021913.16
ENSMUST00000123599.8
ENSMUST00000137064.8
CDS TCA 72 bp GCAAATTGGAAACAAAGCTGGATGTCAGCCTTCAGCTaGAAAGAAACAGCACAGAATATCCCAGGGACTTCA +
Preference number: 6 (lower is better)
Translates to: ANWKQSWMSAFS*KETAQNIPGTS
Trigger: TGAAGTCCCTGGGATATTCTGTGCTGTTTCTTTTCAGCTGAAGGCTGACATCCAGCTTTGTTTCCAATTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110031.4