Pregenerated sensors for ATXN7L3B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074748Ensembl transcript IDs: ENSMUST00000099276.4
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCAGCACCTGGAATCATGAGCTGCACCAGAGAGGCAGTGGAGCAGTaGCAGGAACATGGCCAAGCCAGACAGATGAGGCTGGACCCTTTA | + |
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Preference number: 1 (lower is better) Translates to: AAPGIMSCTREAVEQ*QEHGQARQMRLDPL Trigger: TAAAGGGTCCAGCCTCATCTGTCTGGCTTGGCCATGTTCCTGTCACTGCTCCACTGCCTCTCTGGTGCAGCTCATGATTCCAGGTGCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CCA 90 bp | AATCATGAGCTGCACCAGAGAGGCAGTGGAGCAGTGACAGGAACATaGCCAAGCCAGACAGATGAGGCTGGACCCTTTACTGGGGCACAG | + |
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Preference number: 1 (lower is better) Translates to: NHELHQRGSGAVTGT*PSQTDEAGPFTGAQ Trigger: CTGTGCCCCAGTAAAGGGTCCAGCCTCATCTGTCTGGCTTGGCCATGTTCCTGTCACTGCTCCACTGCCTCTCTGGTGCAGCTCATGATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR TCA 90 bp | AAGTTCCCTCCTGGCTCAATTTTTAAACAGCCTCCTGCTCTGCCATaGTGTCCTTCTGTAGGTCAGTGGTACCACTGGAGGGCAGCGACC | + |
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Preference number: 1 (lower is better) Translates to: KFPPGSIFKQPPALP*CPSVGQWYHWRAAT Trigger: GGTCGCTGCCCTCCAGTGGTACCACTGACCTACAGAAGGACATCATGGCAGAGCAGGAGGCTGTTTAAAAATTGAGCCAGGAGGGAACTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR TCA 90 bp | CTGCTGGAAGGAGGTTCTGAGGACCAAGTGATGAACTGCTGTTTGTaGGGGCAGAGAAGGTGGAGACAGTCTCAATCAGCACAGCAGAGG | + |
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Preference number: 1 (lower is better) Translates to: LLEGGSEDQVMNCCL*GQRRWRQSQSAQQR Trigger: CCTCTGCTGTGCTGATTGAGACTGTCTCCACCTTCTCTGCCCTCACAAACAGCAGTTCATCACTTGGTCCTCAGAACCTCCTTCCAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CCA 90 bp | GAGCTGAAATTGGTCGAGAGAAAACCTAGTGTGGCAAGCAGCACCTaGAATCATGAGCTGCACCAGAGAGGCAGTGGAGCAGTGACAGGA | + |
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Preference number: 1 (lower is better) Translates to: ELKLVERKPSVASST*NHELHQRGSGAVTG Trigger: TCCTGTCACTGCTCCACTGCCTCTCTGGTGCAGCTCATGATTCCAGGTGCTGCTTGCCACACTAGGTTTTCTCTCGACCAATTTCAGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR TCA 90 bp | CAACTTTCCATCAAGAAATATACAGCCCCTGCTGGAAGGAGGTTCTaGGGACCAAGTGATGAACTGCTGTTTGTGAGGGCAGAGAAGGTG | + |
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Preference number: 1 (lower is better) Translates to: QLSIKKYTAPAGRRF*GPSDELLFVRAEKV Trigger: CACCTTCTCTGCCCTCACAAACAGCAGTTCATCACTTGGTCCTCAGAACCTCCTTCCAGCAGGGGCTGTATATTTCTTGATGGAAAGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CCA 90 bp | AGCTCCTGGGAGAAGGAAGATACATACACAATAGGATTAGAAATGTaGAGCAGAACCAACTCCTTCCTTGTGTATGCCAGCATTCCTGGC | + |
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Preference number: 1 (lower is better) Translates to: SSWEKEDTYTIGLEM*SRTNSFLVYASIPG Trigger: GCCAGGAATGCTGGCATACACAAGGAAGGAGTTGGTTCTGCTCCACATTTCTAATCCTATTGTGTATGTATCTTCCTTCTCCCAGGAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CCA 90 bp | AAACTAAAGTCACATTTGAGCTCCCTATCTGAAGGCAAGAGTGAGTaGGCCATGGCCTTTCTCCCTTTCATGTTTCCCAAGTACTTTATA | + |
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Preference number: 1 (lower is better) Translates to: KLKSHLSSLSEGKSE*AMAFLPFMFPKYFI Trigger: TATAAAGTACTTGGGAAACATGAAAGGGAGAAAGGCCATGGCCCACTCACTCTTGCCTTCAGATAGGGAGCTCAAATGTGACTTTAGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR TCA 90 bp | GGTACACTTCATCCTCATAGCATCAAAAGAAAATCTTCAGCTGTTTaGAAACCACCTTGTCCTTTGCCAAACCTTTGCCACTCAGTAGGA | + |
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Preference number: 1 (lower is better) Translates to: GTLHPHSIKRKSSAV*KPPCPLPNLCHSVG Trigger: TCCTACTGAGTGGCAAAGGTTTGGCAAAGGACAAGGTGGTTTTCAAACAGCTGAAGATTTTCTTTTGATGCTATGAGGATGAAGTGTACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CCA 90 bp | TCTTTGAGTATAATCCAAATTAGTCCACACACTTCAAATAGCTCCTaGGAGAAGGAAGATACATACACAATAGGATTAGAAATGTGGAGC | + |
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Preference number: 1 (lower is better) Translates to: SLSIIQISPHTSNSS*EKEDTYTIGLEMWS Trigger: GCTCCACATTTCTAATCCTATTGTGTATGTATCTTCCTTCTCCCAGGAGCTATTTGAAGTGTGTGGACTAATTTGGATTATACTCAAAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR TCA 90 bp | GACAGTCTCAATCAGCACAGCAGAGGTCTGACTGCCCAGTTGATGAAGGAATTCCCTCCTGCTCTGCCATaGTGTCCTTCTGTAGGTCAG | + |
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Preference number: 2 (lower is better) Translates to: DSLNQHSRGLTAQLMKEFPPALP*CPSVGQ Trigger: CTGACCTACAGAAGGACATCATGGCAGAGCAGGAGG...GAATTCCTTCATCAACTGGGCAGTCAGACCTCTGCTGTGCTGATTGAGACTGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR GCA 90 bp | GAAATGTGGAGCAGAACCAACTCCTTCCTTGTGTATGCCAGCATTCCTGGCTCTCCTGGAATCATGAGCTaGACCAGAGAGGCAGTGGAG | + |
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Preference number: 2 (lower is better) Translates to: EMWSRTNSFLVYASIPGSPGIMS*TREAVE Trigger: CTCCACTGCCTCTCTGGTGCAGCTCATGATTCCAGG...AGAGCCAGGAATGCTGGCATACACAAGGAAGGAGTTGGTTCTGCTCCACATTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CCA 90 bp | CCTGAGCTGCAAAACTCTGAGAAGGCAACAACAGACAGTCTCAAGGCTCAAGCAGTGGCAAGCAGCACCTaGAATCATGAGCTGCACCAG | + |
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Preference number: 2 (lower is better) Translates to: PELQNSEKATTDSLKAQAVASST*NHELHQ Trigger: CTGGTGCAGCTCATGATTCCAGGTGCTGCTTGCCAC...TGCTTGAGCCTTGAGACTGTCTGTTGTTGCCTTCTCAGAGTTTTGCAGCTCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR GCA 90 bp | GAAATGTGGAGCAGAACCAACTCCTTCCTTGTGTATGCCAGCATTCCTGGCTCTGAAATATACAGCCCCTaGTGGAAGGAGGTTCTGAGG | + |
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Preference number: 2 (lower is better) Translates to: EMWSRTNSFLVYASIPGSEIYSP*WKEVLR Trigger: CCTCAGAACCTCCTTCCAGCAGGGGCTGTATATTTC...AGAGCCAGGAATGCTGGCATACACAAGGAAGGAGTTGGTTCTGCTCCACATTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CAA 90 bp | GGGTACACAGCTGCTCACCTGTGTACCGAGGACAGTTCAGGGTCCTaGCACATCCACATGTATTTTATACAGCTCAAAATACAGCACGAC | + |
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Preference number: 2 (lower is better) Translates to: GYTAAHLCTEDSSGS*HIHMYFIQLKIQHD Trigger: GTCGTGCTGTATTTTGAGCTGTATAAAATACATGTGGATGTGCAAGGACCCTGAACTGTCCTCGGTACACAGGTGAGCAGCTGTGTACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR TCA 90 bp | CAATACAATGAACAGAAGAGGAAGGATAGGATTCTGCTGTTACAGGAGGGCAGGGCTGGAAGGAGGTTCTaGGGACCAAGTGATGAACTG | + |
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Preference number: 2 (lower is better) Translates to: QYNEQKRKDRILLLQEGRAGRRF*GPSDEL Trigger: CAGTTCATCACTTGGTCCTCAGAACCTCCTTCCAGC...CCTGCCCTCCTGTAACAGCAGAATCCTATCCTTCCTCTTCTGTTCATTGTATTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR GCA 90 bp | CTGCAACCATACCAGGTAAACCAGGCCTGTTTCAGGGCTCTTAGCATTAAACTCCAGTTGGACATGATGTaGAGTCGCGGAGGTACACTT | + |
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Preference number: 2 (lower is better) Translates to: LQPYQVNQACFRALSIKLQLDMM*SRGGTL Trigger: AAGTGTACCTCCGCGACTGCACATCATGTCCAACTG...GAGTTTAATGCTAAGAGCCCTGAAACAGGCCTGGTTTACCTGGTATGGTTGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR TCA 90 bp | GAAATGTGGAGCAGAACCAACTCCTTCCTTGTGTATGCCAGCATTCCTGGCTCTGGAAGAAAGAACTCATaGCAGGCAGGGAGATATACT | + |
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Preference number: 2 (lower is better) Translates to: EMWSRTNSFLVYASIPGSGRKNS*QAGRYT Trigger: AGTATATCTCCCTGCCTGTCATGAGTTCTTTCTTCC...AGAGCCAGGAATGCTGGCATACACAAGGAAGGAGTTGGTTCTGCTCCACATTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CCA 90 bp | AGACAGTCTCAATCAGCACAGCAGAGGTCTGACTGCCCAGTTGATGAAGGAATTATCAAGTCAGACCCATaGGCTGGTTACATCACCAGT | + |
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Preference number: 2 (lower is better) Translates to: RQSQSAQQRSDCPVDEGIIKSDP*AGYITS Trigger: ACTGGTGATGTAACCAGCCCATGGGTCTGACTTGAT...AATTCCTTCATCAACTGGGCAGTCAGACCTCTGCTGTGCTGATTGAGACTGTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CAA 90 bp | CCCACAAAATGCTGGACCTTTGGAAAACAGGTGATTTGGAACTTCTaGAAGACAAGGGCACAAGGGCTTCCCATCGAATTCAAACGGGAA | + |
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Preference number: 2 (lower is better) Translates to: PTKCWTFGKQVIWNF*KTRAQGLPIEFKRE Trigger: TTCCCGTTTGAATTCGATGGGAAGCCCTTGTGCCCTTGTCTTCAAGAAGTTCCAAATCACCTGTTTTCCAAAGGTCCAGCATTTTGTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CCA 90 bp | CAAACCCATTACCCCAAACTACTACCCACATCTTTATGTTCTAACCAGAAAAGGGAAGGCAAGAGTGAGTaGGCCATGGCCTTTCTCCCT | + |
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Preference number: 2 (lower is better) Translates to: QTHYPKLLPTSLCSNQKREGKSE*AMAFLP Trigger: AGGGAGAAAGGCCATGGCCCACTCACTCTTGCCTTC...CCTTTTCTGGTTAGAACATAAAGATGTGGGTAGTAGTTTGGGGTAATGGGTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CCA 90 bp | CAGTATGTAATTCAAGACATGAGTCTTCCAGTTGGACATGATGTGCAGTCGCGGTGCCACTCAGTAGGATaGAAAGACAGGTCTTCTGAT | + |
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Preference number: 2 (lower is better) Translates to: QYVIQDMSLPVGHDVQSRCHSVG*KDRSSD Trigger: ATCAGAAGACCTGTCTTTCCATCCTACTGAGTGGCA...CCGCGACTGCACATCATGTCCAACTGGAAGACTCATGTCTTGAATTACATACTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR TCA 90 bp | CCTGAGCTGCAAAACTCTGAGAAGGCAACAACAGACAGTCTCAAGGCTCAAGCAGGCAGATGCAGAATCTaGGAAACAAATAGAATTGTA | + |
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Preference number: 2 (lower is better) Translates to: PELQNSEKATTDSLKAQAGRCRI*ETNRIV Trigger: TACAATTCTATTTGTTTCTCAGATTCTGCATCTGCC...TGCTTGAGCCTTGAGACTGTCTGTTGTTGCCTTCTCAGAGTTTTGCAGCTCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR TCA 90 bp | CTGCAACCATACCAGGTAAACCAGGCCTGTTTCAGGGCTCTTAGCATTAAACTCAAATCTTCAGCTGTTTaGAAACCACCTTGTCCTTTG | + |
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Preference number: 2 (lower is better) Translates to: LQPYQVNQACFRALSIKLKSSAV*KPPCPL Trigger: CAAAGGACAAGGTGGTTTTCAAACAGCTGAAGATTT...GAGTTTAATGCTAAGAGCCCTGAAACAGGCCTGGTTTACCTGGTATGGTTGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CAA 90 bp | CAACAGACAGTCTCAAGGCTCAAGCACTATAATTGCCTCAACTCTTaGAGTATAATCCAAATTAGTCCACACACTTCAAATAGCTCCTGG | + |
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Preference number: 2 (lower is better) Translates to: QQTVSRLKHYNCLNS*SIIQISPHTSNSSW Trigger: CCAGGAGCTATTTGAAGTGTGTGGACTAATTTGGATTATACTCAAAGAGTTGAGGCAATTATAGTGCTTGAGCCTTGAGACTGTCTGTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CCA 90 bp | CAAACCCATTACCCCAAACTACTACCCACATCTTTATGTTCTAACCAGAAAAGGATAGGATTAGAAATGTaGAGCAGAACCAACTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: QTHYPKLLPTSLCSNQKRIGLEM*SRTNSF Trigger: GAAGGAGTTGGTTCTGCTCCACATTTCTAATCCTAT...CCTTTTCTGGTTAGAACATAAAGATGTGGGTAGTAGTTTGGGGTAATGGGTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CCA 90 bp | CAAACCCATTACCCCAAACTACTACCCACATCTTTATGTTCTAACCAGAAAAGGCGTTCTCAAAATTCTTaGACTAAGGATCCAAACTGT | + |
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Preference number: 2 (lower is better) Translates to: QTHYPKLLPTSLCSNQKRRSQNS*TKDPNC Trigger: ACAGTTTGGATCCTTAGTCCAAGAATTTTGAGAACG...CCTTTTCTGGTTAGAACATAAAGATGTGGGTAGTAGTTTGGGGTAATGGGTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR TCA 72 bp | GGAATCATGAGCTGCACCAGAGAGGCAGTGGAGCAGTaGCAGGAACATGGCCAAGCCAGACAGATGAGGCTG | + |
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Preference number: 3 (lower is better) Translates to: GIMSCTREAVEQ*QEHGQARQMRL Trigger: CAGCCTCATCTGTCTGGCTTGGCCATGTTCCTGTCACTGCTCCACTGCCTCTCTGGTGCAGCTCATGATTCC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CCA 72 bp | TTGGTCGAGAGAAAACCTAGTGTGGCAAGCAGCACCTaGAATCATGAGCTGCACCAGAGAGGCAGTGGAGCA | + |
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Preference number: 3 (lower is better) Translates to: LVERKPSVASST*NHELHQRGSGA Trigger: TGCTCCACTGCCTCTCTGGTGCAGCTCATGATTCCAGGTGCTGCTTGCCACACTAGGTTTTCTCTCGACCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR GCA 72 bp | GTCAATACAATGAACAGAAGAGGAAGGATAGGATTCTaGTGTTACAGGAGGGCAGGGGAAGGGGAGGGCTCC | + |
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Preference number: 3 (lower is better) Translates to: VNTMNRRGRIGF*CYRRAGEGEGS Trigger: GGAGCCCTCCCCTTCCCCTGCCCTCCTGTAACAGCAGAATCCTATCCTTCCTCTTCTGTTCATTGTATTGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CAA 90 bp | CTGCAACCATACCAGGTAAACCAGGCCTGTTTCAGGGCTCTTAGCATTAAACTCGACCAGTCTCTATTATaGTCCTGGTCACTGTGTCGC | + |
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Preference number: 3 (lower is better) Translates to: LQPYQVNQACFRALSIKLDQSLL*SWSLCR Trigger: GCGACACAGTGACCAGGACAATAATAGAGACTGGTC...GAGTTTAATGCTAAGAGCCCTGAAACAGGCCTGGTTTACCTGGTATGGTTGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR TCA 72 bp | ATCAAGAAATATACAGCCCCTGCTGGAAGGAGGTTCTaGGGACCAAGTGATGAACTGCTGTTTGTGAGGGCA | + |
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Preference number: 3 (lower is better) Translates to: IKKYTAPAGRRF*GPSDELLFVRA Trigger: TGCCCTCACAAACAGCAGTTCATCACTTGGTCCTCAGAACCTCCTTCCAGCAGGGGCTGTATATTTCTTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR TCA 72 bp | GGCCGTATCCAAGTAGCAATGGGAAGAAAGAACTCATaGCAGGCAGGGAGATATACTAGCAAGGCAGCCTTA | + |
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Preference number: 3 (lower is better) Translates to: GRIQVAMGRKNS*QAGRYTSKAAL Trigger: TAAGGCTGCCTTGCTAGTATATCTCCCTGCCTGTCATGAGTTCTTTCTTCCCATTGCTACTTGGATACGGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CCA 72 bp | CCCACAAAATGCTGGACCTTTGGAAAACAGGTGATTTaGAACTTCTTGAAGACAAGGGCACAAGGGCTTCCC | + |
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Preference number: 3 (lower is better) Translates to: PTKCWTFGKQVI*NFLKTRAQGLP Trigger: GGGAAGCCCTTGTGCCCTTGTCTTCAAGAAGTTCCAAATCACCTGTTTTCCAAAGGTCCAGCATTTTGTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CCA 72 bp | GGGCAGCGACCTGTCATAATGATCAAGTCAGACCCATaGGCTGGTTACATCACCAGTAACTCAAAAGTAGGA | + |
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Preference number: 3 (lower is better) Translates to: GQRPVIMIKSDP*AGYITSNSKVG Trigger: TCCTACTTTTGAGTTACTGGTGATGTAACCAGCCCATGGGTCTGACTTGATCATTATGACAGGTCGCTGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CAA 90 bp | AAGGGGAGGGCTCCTAACCACTGTCAACTATATGCTGGAGAACATTTGCTCCCAGACAGTTCAGGGTCCTaGCACATCCACATGTATTTT | + |
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Preference number: 3 (lower is better) Translates to: KGRAPNHCQLYAGEHLLPDSSGS*HIHMYF Trigger: AAAATACATGTGGATGTGCAAGGACCCTGAACTGTC...TGGGAGCAAATGTTCTCCAGCATATAGTTGACAGTGGTTAGGAGCCCTCCCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CAA 90 bp | AAGGGGAGGGCTCCTAACCACTGTCAACTATATGCTGGAGAACATTTGCTCCCAGAGAAACAAATAGAATaGTATAGGCTGGGTACACAG | + |
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Preference number: 3 (lower is better) Translates to: KGRAPNHCQLYAGEHLLPEKQIE*YRLGTQ Trigger: CTGTGTACCCAGCCTATACAATTCTATTTGTTTCTC...TGGGAGCAAATGTTCTCCAGCATATAGTTGACAGTGGTTAGGAGCCCTCCCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CAA 90 bp | ACTTCTAACCCTGCCTCCAACTTTCCATCAAGAAATATACAGCCCCTGCTGGAATGTTTGAAAACCACCTaGTCCTTTGCCAAACCTTTG | + |
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Preference number: 3 (lower is better) Translates to: TSNPASNFPSRNIQPLLECLKTT*SFAKPL Trigger: CAAAGGTTTGGCAAAGGACAAGGTGGTTTTCAAACA...TTCCAGCAGGGGCTGTATATTTCTTGATGGAAAGTTGGAGGCAGGGTTAGAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR TCA 72 bp | GTATGTAATTCAAGACATGAGTCTTCCAGTTGGACATaGTGTGCAGTCGCGGAGGTACACTTCATCCTCATA | + |
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Preference number: 3 (lower is better) Translates to: VCNSRHESSSWT*CAVAEVHFILI Trigger: TATGAGGATGAAGTGTACCTCCGCGACTGCACATCATGTCCAACTGGAAGACTCATGTCTTGAATTACATAC 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CAA 90 bp | CAAACCCATTACCCCAAACTACTACCCACATCTTTATGTTCTAACCAGAAAAGGGTGATTTGGAACTTCTaGAAGACAAGGGCACAAGGG | + |
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Preference number: 3 (lower is better) Translates to: QTHYPKLLPTSLCSNQKRVIWNF*KTRAQG Trigger: CCCTTGTGCCCTTGTCTTCAAGAAGTTCCAAATCAC...CCTTTTCTGGTTAGAACATAAAGATGTGGGTAGTAGTTTGGGGTAATGGGTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CAA 90 bp | CAAACCCATTACCCCAAACTACTACCCACATCTTTATGTTCTAACCAGAAAAGGAAACCACCTTGTCCTTaGCCAAACCTTTGCCACTCA | + |
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Preference number: 3 (lower is better) Translates to: QTHYPKLLPTSLCSNQKRKPPCP*PNLCHS Trigger: TGAGTGGCAAAGGTTTGGCAAAGGACAAGGTGGTTT...CCTTTTCTGGTTAGAACATAAAGATGTGGGTAGTAGTTTGGGGTAATGGGTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CCA 72 bp | GAGAAGGAAGATACATACACAATAGGATTAGAAATGTaGAGCAGAACCAACTCCTTCCTTGTGTATGCCAGC | + |
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Preference number: 3 (lower is better) Translates to: EKEDTYTIGLEM*SRTNSFLVYAS Trigger: GCTGGCATACACAAGGAAGGAGTTGGTTCTGCTCCACATTTCTAATCCTATTGTGTATGTATCTTCCTTCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CAA 90 bp | ACTTCTAACCCTGCCTCCAACTTTCCATCAAGAAATATACAGCCCCTGCTGGAAATACCTGACTTCTATTaGTATCAAAGAGGCCCAATT | + |
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Preference number: 3 (lower is better) Translates to: TSNPASNFPSRNIQPLLEIPDFY*YQRGPI Trigger: AATTGGGCCTCTTTGATACAAATAGAAGTCAGGTAT...TTCCAGCAGGGGCTGTATATTTCTTGATGGAAAGTTGGAGGCAGGGTTAGAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CAA 90 bp | CAGTATGTAATTCAAGACATGAGTCTTCCAGTTGGACATGATGTGCAGTCGCGGAAAATCTTCAGCTGTTaGAAAACCACCTTGTCCTTT | + |
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Preference number: 3 (lower is better) Translates to: QYVIQDMSLPVGHDVQSRKIFSC*KTTLSF Trigger: AAAGGACAAGGTGGTTTTCAAACAGCTGAAGATTTT...CCGCGACTGCACATCATGTCCAACTGGAAGACTCATGTCTTGAATTACATACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR-3UTR CAA 90 bp | CAAACCCATTACCCCAAACTACTACCCACATCTTTATGTTCTAACCAGAAAAGGTGGAAAACAGGTGATTaGGAACTTCTTGAAGACAAG | + |
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Preference number: 3 (lower is better) Translates to: QTHYPKLLPTSLCSNQKRWKTGD*ELLEDK Trigger: CTTGTCTTCAAGAAGTTCCAAATCACCTGTTTTCCA...CCTTTTCTGGTTAGAACATAAAGATGTGGGTAGTAGTTTGGGGTAATGGGTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR GCA 72 bp | CAACAACAGACAGTCTCAAGGCTCAAGCACTATAATTaGCTCAACTCTTTGAGTATAATCCAAATTAGTCCA | + |
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Preference number: 3 (lower is better) Translates to: QQQTVSRLKHYN*LNSLSIIQISP Trigger: TGGACTAATTTGGATTATACTCAAAGAGTTGAGGCAATTATAGTGCTTGAGCCTTGAGACTGTCTGTTGTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CCA 72 bp | ATAATCCAAATTAGTCCACACACTTCAAATAGCTCCTaGGAGAAGGAAGATACATACACAATAGGATTAGAA | + |
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Preference number: 3 (lower is better) Translates to: IIQISPHTSNSS*EKEDTYTIGLE Trigger: TTCTAATCCTATTGTGTATGTATCTTCCTTCTCCCAGGAGCTATTTGAAGTGTGTGGACTAATTTGGATTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS-3UTR CCA 90 bp | CTGGGTACACAGCTGCTCACCTGTGTACCGAGGACAGTTCAGGGTCCTTGCACACGCTGCAGCTCCGTCTaGGGCCCGTCCCCGGGATCC | + |
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Preference number: 4 (lower is better) Translates to: LGTQLLTCVPRTVQGPCTRCSSV*GPSPGS Trigger: GGATCCCGGGGACGGGCCCCAGACGGAGCTGCAGCG...TGTGCAAGGACCCTGAACTGTCCTCGGTACACAGGTGAGCAGCTGTGTACCCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS-3UTR TCA 90 bp | GAAATGTGGAGCAGAACCAACTCCTTCCTTGTGTATGCCAGCATTCCTGGCTCTCTGGAATTCCGGAGGTaGACGCTGCAGCTCCGTCTG | + |
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Preference number: 4 (lower is better) Translates to: EMWSRTNSFLVYASIPGSLEFRR*TLQLRL Trigger: CAGACGGAGCTGCAGCGTTCACCTCCGGAATTCCAG...AGAGCCAGGAATGCTGGCATACACAAGGAAGGAGTTGGTTCTGCTCCACATTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS-3UTR CCA 90 bp | CACAGCTGCTCACCTGTGTACCGAGGACAGTTCAGGGTCCTTGCACATCCACATTTGTCCTCCACTGGCTaGATGCCGAAATCCTTCACG | + |
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Preference number: 4 (lower is better) Translates to: HSCSPVYRGQFRVLAHPHLSSTG*MPKSFT Trigger: CGTGAAGGATTTCGGCATCCAGCCAGTGGAGGACAA...ATGTGGATGTGCAAGGACCCTGAACTGTCCTCGGTACACAGGTGAGCAGCTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CAA 72 bp | GGCTTCGGAGGAGCAGCACTGGAAGATGAGCTGAAATaGGTCGAGAGAAAACCTAGTGTGGCAAGCAGCACC | + |
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Preference number: 4 (lower is better) Translates to: GFGGAALEDELK*VERKPSVASST Trigger: GGTGCTGCTTGCCACACTAGGTTTTCTCTCGACCAATTTCAGCTCATCTTCCAGTGCTGCTCCTCCGAAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CAA 72 bp | TTATTCCTCCAAAGCCACGGGGACCAGTCTCTATTATaGTCCTGGTCACTGTGTCGCCCTCTCTCAGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: LFLQSHGDQSLL*SWSLCRPLSGG Trigger: ACCACCTGAGAGAGGGCGACACAGTGACCAGGACAATAATAGAGACTGGTCCCCGTGGCTTTGGAGGAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS-3UTR GCA 90 bp | CAATACAATGAACAGAAGAGGAAGGATAGGATTCTGCTGTTACAGGAGGGCAGGCCTCCACTGGCTGGATaGCGAAATCCTTCACGCTCC | + |
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Preference number: 4 (lower is better) Translates to: QYNEQKRKDRILLLQEGRPPLAG*RNPSRS Trigger: GGAGCGTGAAGGATTTCGGCATCCAGCCAGTGGAGG...CCTGCCCTCCTGTAACAGCAGAATCCTATCCTTCCTCTTCTGTTCATTGTATTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS-3UTR GCA 90 bp | CAGGTGATTTGGAACTTCTTGAAGACAAGGGCACAAGGGCTTCCCATCGAATTCCACGCTCCCAGTGTCTaGAAACTCCAGGTAGAAGTA | + |
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Preference number: 4 (lower is better) Translates to: QVIWNFLKTRAQGLPIEFHAPSV*KLQVEV Trigger: TACTTCTACCTGGAGTTTGCAGACACTGGGAGCGTG...GAATTCGATGGGAAGCCCTTGTGCCCTTGTCTTCAAGAAGTTCCAAATCACCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CAA 72 bp | TGCTGGACCTTTGGAAAACAGGTGATTTGGAACTTCTaGAAGACAAGGGCACAAGGGCTTCCCATCGAATTC | + |
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Preference number: 4 (lower is better) Translates to: CWTFGKQVIWNF*KTRAQGLPIEF Trigger: GAATTCGATGGGAAGCCCTTGTGCCCTTGTCTTCAAGAAGTTCCAAATCACCTGTTTTCCAAAGGTCCAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CAA 72 bp | CCTTTCAAATGGACCGGGATTCCTAAATTCTCCTCTTaGGGTGTTTTGTTCGTTTTACGCCTTCTCGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: PFKWTGIPKFSS*GVLFVLRLLGF Trigger: AAAACCGAGAAGGCGTAAAACGAACAAAACACCCAAAGAGGAGAATTTAGGAATCCCGGTCCATTTGAAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| 3UTR CAA 72 bp | GTCTCAAGGCTCAAGCACTATAATTGCCTCAACTCTTaGAGTATAATCCAAATTAGTCCACACACTTCAAAT | + |
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Preference number: 4 (lower is better) Translates to: VSRLKHYNCLNS*SIIQISPHTSN Trigger: ATTTGAAGTGTGTGGACTAATTTGGATTATACTCAAAGAGTTGAGGCAATTATAGTGCTTGAGCCTTGAGAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS CCA 90 bp | AGGGAGCAGAGCGGGAGGCGGCACGCGCCTTTGTCCTCCACTGGCTaGATGCCGAAATCCTTCACGCTCCCAGTGTCTGCAAACTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: REQSGRRHAPLSSTG*MPKSFTLPVSANSR Trigger: CCTGGAGTTTGCAGACACTGGGAGCGTGAAGGATTTCGGCATCCAGCCAGTGGAGGACAAAGGCGCGTGCCGCCTCCCGCTCTGCTCCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS CCA 90 bp | AGGAAGGGAGCAGAGCGGGAGGCGGCACGCGCCTTTGTCCTCCACTaGCTGGATGCCGAAATCCTTCACGCTCCCAGTGTCTGCAAACTC | + |
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Preference number: 5 (lower is better) Translates to: RKGAEREAARAFVLH*LDAEILHAPSVCKL Trigger: GAGTTTGCAGACACTGGGAGCGTGAAGGATTTCGGCATCCAGCCAGTGGAGGACAAAGGCGCGTGCCGCCTCCCGCTCTGCTCCCTTCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS GCA 90 bp | AGCAGAGCGGGAGGCGGCACGCGCCTTTGTCCTCCACTGGCTGGATaGCGAAATCCTTCACGCTCCCAGTGTCTGCAAACTCCAGGTAGA | + |
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Preference number: 5 (lower is better) Translates to: SRAGGGTRLCPPLAG*RNPSRSQCLQTPGR Trigger: TCTACCTGGAGTTTGCAGACACTGGGAGCGTGAAGGATTTCGGCATCCAGCCAGTGGAGGACAAAGGCGCGTGCCGCCTCCCGCTCTGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS-3UTR CAA 90 bp | CAGGTGATTTGGAACTTCTTGAAGACAAGGGCACAAGGGCTTCCCATCGAATTCAGGCGGCACGCGCCTTaGTCCTCCACTGGCTGGATG | + |
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Preference number: 5 (lower is better) Translates to: QVIWNFLKTRAQGLPIEFRRHAP*SSTGWM Trigger: CATCCAGCCAGTGGAGGACAAAGGCGCGTGCCGCCT...GAATTCGATGGGAAGCCCTTGTGCCCTTGTCTTCAAGAAGTTCCAAATCACCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS-3UTR CAA 90 bp | AAGGGGAGGGCTCCTAACCACTGTCAACTATATGCTGGAGAACATTTGCTCCCAGCGATGGCCTCCAGCTaGTTAGTATCCAGGTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: KGRAPNHCQLYAGEHLLPAMASS*LVSRLA Trigger: GGCCAACCTGGATACTAACAAGCTGGAGGCCATCGC...TGGGAGCAAATGTTCTCCAGCATATAGTTGACAGTGGTTAGGAGCCCTCCCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS-3UTR CAA 90 bp | GAAATGTGGAGCAGAACCAACTCCTTCCTTGTGTATGCCAGCATTCCTGGCTCTTTGTTAGTATCCAGGTaGGCCAACGAAATCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: EMWSRTNSFLVYASIPGSLLVSR*ANEISS Trigger: GGAGGAGATTTCGTTGGCCAACCTGGATACTAACAA...AGAGCCAGGAATGCTGGCATACACAAGGAAGGAGTTGGTTCTGCTCCACATTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS CAA 90 bp | CCGGGATCCCCAGGAAGGGAGCAGAGCGGGAGGCGGCACGCGCCTTaGTCCTCCACTGGCTGGATGCCGAAATCCTTCACGCTCCCAGTG | + |
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Preference number: 6 (lower is better) Translates to: PGSPGREQSGRRHAP*SSTGWMPKSFTLPV Trigger: CACTGGGAGCGTGAAGGATTTCGGCATCCAGCCAGTGGAGGACAAAGGCGCGTGCCGCCTCCCGCTCTGCTCCCTTCCTGGGGATCCCGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS CAA 72 bp | CCAGGAAGGGAGCAGAGCGGGAGGCGGCACGCGCCTTaGTCCTCCACTGGCTGGATGCCGAAATCCTTCACG | + |
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Preference number: 6 (lower is better) Translates to: PGREQSGRRHAP*SSTGWMPKSFT Trigger: CGTGAAGGATTTCGGCATCCAGCCAGTGGAGGACAAAGGCGCGTGCCGCCTCCCGCTCTGCTCCCTTCCTGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS CCA 72 bp | AGCGGGAGGCGGCACGCGCCTTTGTCCTCCACTGGCTaGATGCCGAAATCCTTCACGCTCCCAGTGTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: SGRRHAPLSSTG*MPKSFTLPVSA Trigger: TGCAGACACTGGGAGCGTGAAGGATTTCGGCATCCAGCCAGTGGAGGACAAAGGCGCGTGCCGCCTCCCGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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| CDS GCA 72 bp | GGAGGCGGCACGCGCCTTTGTCCTCCACTGGCTGGATaGCGAAATCCTTCACGCTCCCAGTGTCTGCAAACT | + |
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Preference number: 6 (lower is better) Translates to: GGGTRLCPPLAG*RNPSRSQCLQT Trigger: AGTTTGCAGACACTGGGAGCGTGAAGGATTTCGGCATCCAGCCAGTGGAGGACAAAGGCGCGTGCCGCCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099276.4 |
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