Pregenerated sensors for ATXN7L2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048997Ensembl transcript IDs: ENSMUST00000102633.9, ENSMUST00000117409.8, ENSMUST00000117784.8, ENSMUST00000119650.8, ENSMUST00000127157.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGGGCAGCTACCGCTGCCACACCCTGGACTGCAGTGGGAGGCTCCTaGGATGGGCGCTCCAGAGCTGGCTCTTTGTGTGCTGGGCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: GAATAATPWTAVGGS*DGRSRAGSLCAGLF Trigger: GAAGAGCCCAGCACACAAAGAGCCAGCTCTGGAGCGCCCATCCCAGGAGCCTCCCACTGCAGTCCAGGGTGTGGCAGCGGTAGCTGCCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CCA 90 bp | AGAGAAGAGAAGGTGGTGTTGGGGGCAGCTACCGCTGCCACACCCTaGACTGCAGTGGGAGGCTCCTGGGATGGGCGCTCCAGAGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: REEKVVLGAATAATP*TAVGGSWDGRSRAG Trigger: GCCAGCTCTGGAGCGCCCATCCCAGGAGCCTCCCACTGCAGTCCAGGGTGTGGCAGCGGTAGCTGCCCCCAACACCACCTTCTCTTCTCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS GCA 90 bp | AGTGGGAGGCTCCTGGGATGGGCGCTCCAGAGCTGGCTCTTTGTGTaGTGGGCTCTTCTCCTTGGGAGACTCTCCTTTTCGGGAGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: SGRLLGWALQSWLFV*WALLLGRLSFSGAG Trigger: GCCAGCTCCCGAAAAGGAGAGTCTCCCAAGGAGAAGAGCCCAGCACACAAAGAGCCAGCTCTGGAGCGCCCATCCCAGGAGCCTCCCACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS GCA 90 bp | AATAGCCTGGCTACCGCCCATGCACTCTGCCTGGCTGCAGGCAGCTaGTACACTGGGGGAGCCTGCAGGATAGCTAGGGACAAGGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: NSLATAHALCLAAGS*YTGGACRIARDKAV Trigger: GACAGCCTTGTCCCTAGCTATCCTGCAGGCTCCCCCAGTGTAGCAGCTGCCTGCAGCCAGGCAGAGTGCATGGGCGGTAGCCAGGCTATT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CCA 90 bp | GGGAGGCTCCTGGGATGGGCGCTCCAGAGCTGGCTCTTTGTGTGCTaGGCTCTTCTCCTTGGGAGACTCTCCTTTTCGGGAGCTGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: GRLLGWALQSWLFVC*ALLLGRLSFSGAGL Trigger: AAGGCCAGCTCCCGAAAAGGAGAGTCTCCCAAGGAGAAGAGCCCAGCACACAAAGAGCCAGCTCTGGAGCGCCCATCCCAGGAGCCTCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS TCA 90 bp | TGGCAGCTTGCTGAAGGACGGAGATGGAGTGTTGGCAGGCAGCGGTaGGGTAATAGCCTGGCTACCGCCCATGCACTCTGCCTGGCTGCA | + |
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Preference number: 5 (lower is better) Translates to: WQLAEGRRWSVGRQR*GNSLATAHALCLAA Trigger: TGCAGCCAGGCAGAGTGCATGGGCGGTAGCCAGGCTATTACCTCACCGCTGCCTGCCAACACTCCATCTCCGTCCTTCAGCAAGCTGCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CCA 90 bp | AAGGACGGAGATGGAGTGTTGGCAGGCAGCGGTGAGGTAATAGCCTaGCTACCGCCCATGCACTCTGCCTGGCTGCAGGCAGCTGCTACA | + |
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Preference number: 5 (lower is better) Translates to: KDGDGVLAGSGEVIA*LPPMHSAWLQAAAT Trigger: TGTAGCAGCTGCCTGCAGCCAGGCAGAGTGCATGGGCGGTAGCCAGGCTATTACCTCACCGCTGCCTGCCAACACTCCATCTCCGTCCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS GCA 90 bp | AGCTGGCCTTCAGTTCGGCCACTAGCACATCAAAGTCCTTGGCCCTaGCTGGGACCTCCCTGCGCTGGTGCACTGAGTGGATCTTGCAAG | + |
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Preference number: 5 (lower is better) Translates to: SWPSVRPLAHQSPWP*LGPPCAGALSGSCK Trigger: CTTGCAAGATCCACTCAGTGCACCAGCGCAGGGAGGTCCCAGGCAGGGCCAAGGACTTTGATGTGCTAGTGGCCGAACTGAAGGCCAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS GCA 90 bp | GGCTCGGCTGCTGGTGGGATTTTCTTCCACATGTGTGAGCTGAGATaGCGTTCCAGCATGGAGCTGAGTGCTGAGCAAAACCGGTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: GSAAGGIFFHMCELR*RSSMELSAEQNRSS Trigger: GCTGGACCGGTTTTGCTCAGCACTCAGCTCCATGCTGGAACGGCATCTCAGCTCACACATGTGGAAGAAAATCCCACCAGCAGCCGAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CCA 90 bp | TGTGTGCTGGGCTCTTCTCCTTGGGAGACTCTCCTTTTCGGGAGCTaGCCTTCAGTTCGGCCACTAGCACATCAAAGTCCTTGGCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: CVLGSSPWETLLFGS*PSVRPLAHQSPWPC Trigger: GCAGGGCCAAGGACTTTGATGTGCTAGTGGCCGAACTGAAGGCCAGCTCCCGAAAAGGAGAGTCTCCCAAGGAGAAGAGCCCAGCACACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS GCA 90 bp | TGGCTGACTGAGGAGAGCAGAGGGTGGGGCCACCCTGACTCCATGTaGATCAGGTTTCGGGAGACTGGATATCTTCTCCAGATTCACCAC | + |
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Preference number: 5 (lower is better) Translates to: WLTEESRGWGHPDSM*IRFRETGYLLQIHH Trigger: GTGGTGAATCTGGAGAAGATATCCAGTCTCCCGAAACCTGATGCACATGGAGTCAGGGTGGCCCCACCCTCTGCTCTCCTCAGTCAGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102633.9 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CCA 90 bp | ACTAGCACATCAAAGTCCTTGGCCCTGCCTGGGACCTCCCTGCGCTaGTGCACTGAGTGGATCTTGCAAGTCAATAGGCGTGTACAGATC | + |
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Preference number: 5 (lower is better) Translates to: TSTSKSLALPGTSLR*CTEWILQVNRRVQI Trigger: GATCTGTACACGCCTATTGACTTGCAAGATCCACTCAGTGCACCAGCGCAGGGAGGTCCCAGGCAGGGCCAAGGACTTTGATGTGCTAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS GCA 90 bp | TTCGTCATCCACCTCACTCTCAGAGGAGGCATGGGACCTGGGGAGTaGACAGTACGGATAGGTCTGCTTAGACAGAGAAGAGAAGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: FVIHLTLRGGMGPGE*TVRIGLLRQRREGG Trigger: ACCACCTTCTCTTCTCTGTCTAAGCAGACCTATCCGTACTGTGCACTCCCCAGGTCCCATGCCTCCTCTGAGAGTGAGGTGGATGACGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS GCA 90 bp | AGGCGTGTACAGATCTTCTTGGTCTCTGGATTTATGACCCCGCACTaGCTGTTGAGGTCGAACTCCTTCCGAGCCATCTTTCGGTGGGTT | + |
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Preference number: 5 (lower is better) Translates to: RRVQIFLVSGFMTPH*LLRSNSFRAIFRWV Trigger: AACCCACCGAAAGATGGCTCGGAAGGAGTTCGACCTCAACAGGCAGTGCGGGGTCATAAATCCAGAGACCAAGAAGATCTGTACACGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS GCA 72 bp | GGTGTTGGGGGCAGCTACCGCTGCCACACCCTGGACTaGAGTGGGAGGCTCCTGGGATGGGCGCTCCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: GVGGSYRCHTLD*SGRLLGWALQS Trigger: GCTCTGGAGCGCCCATCCCAGGAGCCTCCCACTGCAGTCCAGGGTGTGGCAGCGGTAGCTGCCCCCAACACC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS GCA 72 bp | TGCCTGGCTGCAGGCAGCTGCTACACTGGGGGAGCCTaGAGGATAGCTAGGGACAAGGCTGTCCTTGACGGG | + |
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Preference number: 6 (lower is better) Translates to: CLAAGSCYTGGA*RIARDKAVLDG Trigger: CCCGTCAAGGACAGCCTTGTCCCTAGCTATCCTGCAGGCTCCCCCAGTGTAGCAGCTGCCTGCAGCCAGGCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CCA 72 bp | GATGGAGTGTTGGCAGGCAGCGGTGAGGTAATAGCCTaGCTACCGCCCATGCACTCTGCCTGGCTGCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: DGVLAGSGEVIA*LPPMHSAWLQA Trigger: TGCCTGCAGCCAGGCAGAGTGCATGGGCGGTAGCCAGGCTATTACCTCACCGCTGCCTGCCAACACTCCATC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CAA 72 bp | CTGGCCTTCAGTTCGGCCACTAGCACATCAAAGTCCTaGGCCCTGCCTGGGACCTCCCTGCGCTGGTGCACT | + |
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Preference number: 6 (lower is better) Translates to: LAFSSATSTSKS*ALPGTSLRWCT Trigger: AGTGCACCAGCGCAGGGAGGTCCCAGGCAGGGCCAAGGACTTTGATGTGCTAGTGGCCGAACTGAAGGCCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CAA 90 bp | TTTCGGGAGCTGGCCTTCAGTTCGGCCACTAGCACATCAAAGTCCTaGGCCCTGCCTGGGACCTCCCTGCGCTGGTGCACTGAGTGGATC | + |
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Preference number: 6 (lower is better) Translates to: FRELAFSSATSTSKS*ALPGTSLRWCTEWI Trigger: GATCCACTCAGTGCACCAGCGCAGGGAGGTCCCAGGCAGGGCCAAGGACTTTGATGTGCTAGTGGCCGAACTGAAGGCCAGCTCCCGAAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS TCA 72 bp | GCTGAAGGACGGAGATGGAGTGTTGGCAGGCAGCGGTaGGGTAATAGCCTGGCTACCGCCCATGCACTCTGC | + |
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Preference number: 6 (lower is better) Translates to: AEGRRWSVGRQR*GNSLATAHALC Trigger: GCAGAGTGCATGGGCGGTAGCCAGGCTATTACCTCACCGCTGCCTGCCAACACTCCATCTCCGTCCTTCAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CCA 72 bp | CTGGCCCTTCTCCCTGGAGGAGGTTTTGGTGGAACCTaGGGCTCTACAAGCTGGGCCCTGCCCATTCACTAC | + |
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Preference number: 6 (lower is better) Translates to: LALLPGGGFGGT*GSTSWALPIHY Trigger: GTAGTGAATGGGCAGGGCCCAGCTTGTAGAGCCCCAGGTTCCACCAAAACCTCCTCCAGGGAGAAGGGCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 ENSMUST00000127157.2 |
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| CDS CCA 72 bp | CTGGCCGGCAGTAAGTGGCCAGGTTTTTCCGCTTCTTaGCTACCTCCTCCTCGGAGAGGCAGGTGGTTGGCA | + |
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Preference number: 6 (lower is better) Translates to: LAGSKWPGFSAS*LPPPRRGRWLA Trigger: TGCCAACCACCTGCCTCTCCGAGGAGGAGGTAGCCAAGAAGCGGAAAAACCTGGCCACTTACTGCCGGCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS TCA 72 bp | TGGATGACTTGCTGGCCTTGGAAGGTGGCAGCTTGCTaGAGGACGGAGATGGAGTGTTGGCAGGCAGCGGTG | + |
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Preference number: 6 (lower is better) Translates to: WMTCWPWKVAAC*RTEMECWQAAV Trigger: CACCGCTGCCTGCCAACACTCCATCTCCGTCCTTCAGCAAGCTGCCACCTTCCAAGGCCAGCAAGTCATCCA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS GCA 72 bp | CTCCTGGGATGGGCGCTCCAGAGCTGGCTCTTTGTGTaGTGGGCTCTTCTCCTTGGGAGACTCTCCTTTTCG | + |
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Preference number: 6 (lower is better) Translates to: LLGWALQSWLFV*WALLLGRLSFS Trigger: CGAAAAGGAGAGTCTCCCAAGGAGAAGAGCCCAGCACACAAAGAGCCAGCTCTGGAGCGCCCATCCCAGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CCA 72 bp | CTGGGATGGGCGCTCCAGAGCTGGCTCTTTGTGTGCTaGGCTCTTCTCCTTGGGAGACTCTCCTTTTCGGGA | + |
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Preference number: 6 (lower is better) Translates to: LGWALQSWLFVC*ALLLGRLSFSG Trigger: TCCCGAAAAGGAGAGTCTCCCAAGGAGAAGAGCCCAGCACACAAAGAGCCAGCTCTGGAGCGCCCATCCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CCA 72 bp | CTTCAGTGTAGAGCACTTCTCCTCAAAGGGCAGGGCTaGACCTGGCTTCTTGCGACGCACAGAGCAGGTCCC | + |
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Preference number: 6 (lower is better) Translates to: LQCRALLLKGQG*TWLLATHRAGP Trigger: GGGACCTGCTCTGTGCGTCGCAAGAAGCCAGGTCCAGCCCTGCCCTTTGAGGAGAAGTGCTCTACACTGAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CAA 90 bp | CCCTCCTTGCCTTTGGATGACTTGCTGGCCTTGGAAGGTGGCAGCTaGCTGAAGGACGGAGATGGAGTGTTGGCAGGCAGCGGTGAGGTA | + |
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Preference number: 6 (lower is better) Translates to: PSLPLDDLLALEGGS*LKDGDGVLAGSGEV Trigger: TACCTCACCGCTGCCTGCCAACACTCCATCTCCGTCCTTCAGCAAGCTGCCACCTTCCAAGGCCAGCAAGTCATCCAAAGGCAAGGAGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CAA 90 bp | GCCTCCATCTCCACCCCCTCCTTGCCTTTGGATGACTTGCTGGCCTaGGAAGGTGGCAGCTTGCTGAAGGACGGAGATGGAGTGTTGGCA | + |
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Preference number: 6 (lower is better) Translates to: ASISTPSLPLDDLLA*EGGSLLKDGDGVLA Trigger: TGCCAACACTCCATCTCCGTCCTTCAGCAAGCTGCCACCTTCCAAGGCCAGCAAGTCATCCAAAGGCAAGGAGGGGGTGGAGATGGAGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS GCA 72 bp | GAGGAGAGCAGAGGGTGGGGCCACCCTGACTCCATGTaGATCAGGTTTCGGGAGACTGGATATCTTCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: EESRGWGHPDSM*IRFRETGYLLQ Trigger: CTGGAGAAGATATCCAGTCTCCCGAAACCTGATGCACATGGAGTCAGGGTGGCCCCACCCTCTGCTCTCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102633.9 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS GCA 72 bp | AAGTCCTTGGCCCTGCCTGGGACCTCCCTGCGCTGGTaGACTGAGTGGATCTTGCAAGTCAATAGGCGTGTA | + |
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Preference number: 6 (lower is better) Translates to: KSLALPGTSLRW*TEWILQVNRRV Trigger: TACACGCCTATTGACTTGCAAGATCCACTCAGTGCACCAGCGCAGGGAGGTCCCAGGCAGGGCCAAGGACTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CCA 72 bp | CTGTTGAGGTCGAACTCCTTCCGAGCCATCTTTCGGTaGGTTTTAGGAGGAAGCCTGGCTCCACTGGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: LLRSNSFRAIFR*VLGGSLAPLAS Trigger: GGAGGCCAGTGGAGCCAGGCTTCCTCCTAAAACCCACCGAAAGATGGCTCGGAAGGAGTTCGACCTCAACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CCA 72 bp | GCCCTGCCTGGGACCTCCCTGCGCTGGTGCACTGAGTaGATCTTGCAAGTCAATAGGCGTGTACAGATCTTC | + |
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Preference number: 6 (lower is better) Translates to: ALPGTSLRWCTE*ILQVNRRVQIF Trigger: GAAGATCTGTACACGCCTATTGACTTGCAAGATCCACTCAGTGCACCAGCGCAGGGAGGTCCCAGGCAGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CCA 72 bp | TCAAAGTCCTTGGCCCTGCCTGGGACCTCCCTGCGCTaGTGCACTGAGTGGATCTTGCAAGTCAATAGGCGT | + |
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Preference number: 6 (lower is better) Translates to: SKSLALPGTSLR*CTEWILQVNRR Trigger: ACGCCTATTGACTTGCAAGATCCACTCAGTGCACCAGCGCAGGGAGGTCCCAGGCAGGGCCAAGGACTTTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CAA 72 bp | TTAGTCTTGGTTGAGAGACCCCGACAGCTAGAGGGTTaGCCCTTTCCAGCAGGCTCCAGGATGCAGGTCCGT | + |
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Preference number: 6 (lower is better) Translates to: LVLVERPRQLEG*PFPAGSRMQVR Trigger: ACGGACCTGCATCCTGGAGCCTGCTGGAAAGGGCAAACCCTCTAGCTGTCGGGGTCTCTCAACCAAGACTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CAA 90 bp | AGGGCTGTTTTAGTCTTGGTTGAGAGACCCCGACAGCTAGAGGGTTaGCCCTTTCCAGCAGGCTCCAGGATGCAGGTCCGTTTGAAGGTG | + |
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Preference number: 6 (lower is better) Translates to: RAVLVLVERPRQLEG*PFPAGSRMQVRLKV Trigger: CACCTTCAAACGGACCTGCATCCTGGAGCCTGCTGGAAAGGGCAAACCCTCTAGCTGTCGGGGTCTCTCAACCAAGACTAAAACAGCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CCA 72 bp | GGCTCTTCTCCTTGGGAGACTCTCCTTTTCGGGAGCTaGCCTTCAGTTCGGCCACTAGCACATCAAAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: GSSPWETLLFGS*PSVRPLAHQSP Trigger: AGGACTTTGATGTGCTAGTGGCCGAACTGAAGGCCAGCTCCCGAAAAGGAGAGTCTCCCAAGGAGAAGAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CCA 72 bp | GGCCCATGTCTTCTTTCGCAATGCTTCTGGAAGGCTTaGGGCTTCACCACCTGGCTGCAGTGGTTACATACA | + |
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Preference number: 6 (lower is better) Translates to: GPCLLSQCFWKA*GFTTWLQWLHT Trigger: TGTATGTAACCACTGCAGCCAGGTGGTGAAGCCCCAAGCCTTCCAGAAGCATTGCGAAAGAAGACATGGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000127157.2 |
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| CDS CAA 72 bp | TTCTTGGTCTCTGGATTTATGACCCCGCACTGCCTGTaGAGGTCGAACTCCTTCCGAGCCATCTTTCGGTGG | + |
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Preference number: 6 (lower is better) Translates to: FLVSGFMTPHCL*RSNSFRAIFRW Trigger: CCACCGAAAGATGGCTCGGAAGGAGTTCGACCTCAACAGGCAGTGCGGGGTCATAAATCCAGAGACCAAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS GCA 72 bp | GCTGGTGGGATTTTCTTCCACATGTGTGAGCTGAGATaGCGTTCCAGCATGGAGCTGAGTGCTGAGCAAAAC | + |
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Preference number: 6 (lower is better) Translates to: AGGIFFHMCELR*RSSMELSAEQN Trigger: GTTTTGCTCAGCACTCAGCTCCATGCTGGAACGGCATCTCAGCTCACACATGTGGAAGAAAATCCCACCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS GCA 72 bp | CAGATCTTCTTGGTCTCTGGATTTATGACCCCGCACTaGCTGTTGAGGTCGAACTCCTTCCGAGCCATCTTT | + |
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Preference number: 6 (lower is better) Translates to: QIFLVSGFMTPH*LLRSNSFRAIF Trigger: AAAGATGGCTCGGAAGGAGTTCGACCTCAACAGGCAGTGCGGGGTCATAAATCCAGAGACCAAGAAGATCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CAA 90 bp | TGCACTGAGTGGATCTTGCAAGTCAATAGGCGTGTACAGATCTTCTaGGTCTCTGGATTTATGACCCCGCACTGCCTGTTGAGGTCGAAC | + |
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Preference number: 6 (lower is better) Translates to: CTEWILQVNRRVQIF*VSGFMTPHCLLRSN Trigger: GTTCGACCTCAACAGGCAGTGCGGGGTCATAAATCCAGAGACCAAGAAGATCTGTACACGCCTATTGACTTGCAAGATCCACTCAGTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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| CDS CAA 72 bp | TGGATCTTGCAAGTCAATAGGCGTGTACAGATCTTCTaGGTCTCTGGATTTATGACCCCGCACTGCCTGTTG | + |
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Preference number: 6 (lower is better) Translates to: WILQVNRRVQIF*VSGFMTPHCLL Trigger: CAACAGGCAGTGCGGGGTCATAAATCCAGAGACCAAGAAGATCTGTACACGCCTATTGACTTGCAAGATCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000102633.9 ENSMUST00000117409.8 ENSMUST00000117784.8 ENSMUST00000119650.8 |
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