Pregenerated sensors for ATXN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021189Ensembl transcript IDs: ENSMUST00000021606.12, ENSMUST00000159883.2, ENSMUST00000160186.2, ENSMUST00000160251.8, ENSMUST00000161011.8
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAGGAGCCGACAGACGGAAGACCTGTGGAGTGGCAGCCGACACTTaGGGCACAGGAGGAAGGGCTGCAGAGTTGAGTCCTGAGGGAACT | + |
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Preference number: 1 (lower is better) Translates to: KGADRRKTCGVAADT*GTGGRAAELSPEGT Trigger: AGTTCCCTCAGGACTCAACTCTGCAGCCCTTCCTCCTGTGCCTCAAGTGTCGGCTGCCACTCCACAGGTCTTCCGTCTGTCGGCTCCTTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR CCA 90 bp | ACAGCTGCCCGAAGCATGTCCTCTTCACTCACAGCGTCGCCTCCTTaGTCGCTCCTACGTCCTCCTGAACTTGTGGTCGGTCTTTCACGT | + |
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Preference number: 1 (lower is better) Translates to: TAARSMSSSLTASPP*SLLRPPELVVGLSR Trigger: ACGTGAAAGACCGACCACAAGTTCAGGAGGACGTAGGAGCGACCAAGGAGGCGACGCTGTGAGTGAAGAGGACATGCTTCGGGCAGCTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160186.2 |
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| 3UTR CCA 90 bp | TCACAGCGTCGCCTCCTTGGTCGCTCCTACGTCCTCCTGAACTTGTaGTCGGTCTTTCACGTGGATATGAAAGGGGTCCAGGTCGGTCTA | + |
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Preference number: 1 (lower is better) Translates to: SQRRLLGRSYVLLNL*SVFHVDMKGVQVGL Trigger: TAGACCGACCTGGACCCCTTTCATATCCACGTGAAAGACCGACCACAAGTTCAGGAGGACGTAGGAGCGACCAAGGAGGCGACGCTGTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160186.2 |
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| 3UTR CCA 90 bp | CTCATTAACACACATCACCAGAACCCTCAGTGTTCAACAGGGCTTTaGAAGCCCGGCTTTCAAAGGAGCCGACAGACGGAAGACCTGTGG | + |
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Preference number: 1 (lower is better) Translates to: LINTHHQNPQCSTGL*KPGFQRSRQTEDLW Trigger: CCACAGGTCTTCCGTCTGTCGGCTCCTTTGAAAGCCGGGCTTCCAAAGCCCTGTTGAACACTGAGGGTTCTGGTGATGTGTGTTAATGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR GCA 90 bp | GAAAAGTTAGTCGAGTCTGTGACCAGCCGTGGCAGTGGAGTCCCTTaGCCCTGTCTGTCCTGCAGTACTATAAACAGCAACTCCTGGTTA | + |
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Preference number: 1 (lower is better) Translates to: EKLVESVTSRGSGVP*PCLSCSTINSNSWL Trigger: TAACCAGGAGTTGCTGTTTATAGTACTGCAGGACAGACAGGGGCAAGGGACTCCACTGCCACGGCTGGTCACAGACTCGACTAACTTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR CCA 90 bp | CCCACCACCAGGACTGAAGGGCGAGTTTCTCCTGTGGTGCATTCATaGTGCATGTTACGTAGAAGGAAATCTGTTTGTGTCCTCTGCCTC | + |
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Preference number: 1 (lower is better) Translates to: PTTRTEGRVSPVVHS*CMLRRRKSVCVLCL Trigger: GAGGCAGAGGACACAAACAGATTTCCTTCTACGTAACATGCACCATGAATGCACCACAGGAGAAACTCGCCCTTCAGTCCTGGTGGTGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR GCA 90 bp | ACCACCAGGACTGAAGGGCGAGTTTCTCCTGTGGTGCATTCATGGTaGATGTTACGTAGAAGGAAATCTGTTTGTGTCCTCTGCCTCCTC | + |
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Preference number: 1 (lower is better) Translates to: TTRTEGRVSPVVHSW*MLRRRKSVCVLCLL Trigger: GAGGAGGCAGAGGACACAAACAGATTTCCTTCTACGTAACATGCACCATGAATGCACCACAGGAGAAACTCGCCCTTCAGTCCTGGTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR GCA 90 bp | ACTTCCTTTCATGTCTCTCTAAACGTAGGTTACACTGTGAGCCACTaGTCTCCTTTTGCAGTGTTAGAGACTGAACCCAAGGCCTGGGCC | + |
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Preference number: 1 (lower is better) Translates to: TSFHVSLNVGYTVSH*SPFAVLETEPKAWA Trigger: GGCCCAGGCCTTGGGTTCAGTCTCTAACACTGCAAAAGGAGAGCAGTGGCTCACAGTGTAACCTACGTTTAGAGAGACATGAAAGGAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR GCA 90 bp | GTAGACCAGGCTGGCCTTGAACTCAAGAAGAAATCTGCCTACCTCTaGAGATTTCTCCTAAGTACCAGCATCAAAGGAACACAGCACCAT | + |
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Preference number: 1 (lower is better) Translates to: VDQAGLELKKKSAYL*RFLLSTSIKGTQHH Trigger: ATGGTGCTGTGTTCCTTTGATGCTGGTACTTAGGAGAAATCTGCAGAGGTAGGCAGATTTCTTCTTGAGTTCAAGGCCAGCCTGGTCTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR TCA 90 bp | GGGCTTCAAAGGGGAGGGAGGGGAAAGCAGGTATCAGGGTATCTATaGCACCATGACAAAGACACAGAGTTAATTTCCACCCAAATCATA | + |
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Preference number: 1 (lower is better) Translates to: GLQRGGRGKQVSGYL*HHDKDTELISTQII Trigger: TATGATTTGGGTGGAAATTAACTCTGTGTCTTTGTCATGGTGTCATAGATACCCTGATACCTGCTTTCCCCTCCCTCCCCTTTGAAGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR GCA 90 bp | CATTCATGGTGCATGTTACGTAGAAGGAAATCTGTTTGTGTCCTCTaGCTCCTCTTTTCTCAGCTGGAGAAGAGAGGAAGGAAGGTACAG | + |
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Preference number: 1 (lower is better) Translates to: HSWCMLRRRKSVCVL*LLFSQLEKRGRKVQ Trigger: CTGTACCTTCCTTCCTCTCTTCTCCAGCTGAGAAAAGAGGAGGCAGAGGACACAAACAGATTTCCTTCTACGTAACATGCACCATGAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR CCA 90 bp | AGATTTCTCCTAAGTACCAGCATCAAAGGAACACAGCACCATGTCTaGCCTTCCAAAGGGTCCTTACACTTGGTTATAACACTAGCATCA | + |
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Preference number: 1 (lower is better) Translates to: RFLLSTSIKGTQHHV*PSKGSLHLVITLAS Trigger: TGATGCTAGTGTTATAACCAAGTGTAAGGACCCTTTGGAAGGCCAGACATGGTGCTGTGTTCCTTTGATGCTGGTACTTAGGAGAAATCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR TCA 90 bp | TGCCTTTCTGCTTACAAACCACTACAGTGTCTTTATCTCTTCTGGTaGACATACTGCCAAAGTGGCCCTTACACTGTAATCACACAGACA | + |
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Preference number: 1 (lower is better) Translates to: CLSAYKPLQCLYLFW*TYCQSGPYTVITQT Trigger: TGTCTGTGTGATTACAGTGTAAGGGCCACTTTGGCAGTATGTTCACCAGAAGAGATAAAGACACTGTAGTGGTTTGTAAGCAGAAAGGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR CCA 90 bp | ACCACTACAGTGTCTTTATCTCTTCTGGTGAACATACTGCCAAAGTaGCCCTTACACTGTAATCACACAGACAATGTTACAAAGTGTGAG | + |
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Preference number: 1 (lower is better) Translates to: TTTVSLSLLVNILPK*PLHCNHTDNVTKCE Trigger: CTCACACTTTGTAACATTGTCTGTGTGATTACAGTGTAAGGGCCACTTTGGCAGTATGTTCACCAGAAGAGATAAAGACACTGTAGTGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR TCA 90 bp | GGTGTAGATTTATGGTTTAGGCCAAAGGACAGCTATTCTGAATTTTaGAACATAGATAAGCTCATGACATCCCAAAATATGAAAGTGATC | + |
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Preference number: 1 (lower is better) Translates to: GVDLWFRPKDSYSEF*NIDKLMTSQNMKVI Trigger: GATCACTTTCATATTTTGGGATGTCATGAGCTTATCTATGTTTCAAAATTCAGAATAGCTGTCCTTTGGCCTAAACCATAAATCTACACC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR GCA 90 bp | CTGCCCGAAGCATGTCCTCTTCACTCACAGCGTCGCCTCCTTGGTCGCTCCTACGGTCGGTCTACCTCCTaGTGCTGCTGCTGTTGCCAA | + |
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Preference number: 2 (lower is better) Translates to: LPEACPLHSQRRLLGRSYGRSTS*CCCCCQ Trigger: TTGGCAACAGCAGCAGCAGCAGGAGGTAGACCGACC...GTAGGAGCGACCAAGGAGGCGACGCTGTGAGTGAAGAGGACATGCTTCGGGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160186.2 |
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| 3UTR-3UTR GCA 90 bp | GCTGCCCGAAGCATGTCCTCTTCACTCACAGCGTCGCCTCCTTGGTCGCTCCTACGGTCTACCTCCTGCTaGTGCTGCTGTTGCCAACTA | + |
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Preference number: 2 (lower is better) Translates to: AARSMSSSLTASPPWSLLRSTSC*CCCCQL Trigger: TAGTTGGCAACAGCAGCAGCAGCAGGAGGTAGACCG...TAGGAGCGACCAAGGAGGCGACGCTGTGAGTGAAGAGGACATGCTTCGGGCAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160186.2 |
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| 3UTR CAA 90 bp | CACTCACAGCGTCGCCTCCTTGGTCGCTCCTACGTCCTCCTGAACTaGTGGTCGGTCTTTCACGTGGATATGAAAGGGGTCCAGGTCGGT | + |
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Preference number: 2 (lower is better) Translates to: HSQRRLLGRSYVLLN*WSVFHVDMKGVQVG Trigger: ACCGACCTGGACCCCTTTCATATCCACGTGAAAGACCGACCACAAGTTCAGGAGGACGTAGGAGCGACCAAGGAGGCGACGCTGTGAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160186.2 |
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| 3UTR-3UTR GCA 90 bp | CCTAAGTACCAGCATCAAAGGAACACAGCACCATGTCTGGCCTTCCAAAGGGTCGAGTTTCTCCTGTGGTaGATTCATGGTGCATGTTAC | + |
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Preference number: 2 (lower is better) Translates to: PKYQHQRNTAPCLAFQRVEFLLW*IHGACY Trigger: GTAACATGCACCATGAATGCACCACAGGAGAAACTC...GACCCTTTGGAAGGCCAGACATGGTGCTGTGTTCCTTTGATGCTGGTACTTAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR TCA 90 bp | TGGACTTTACCTATGTACAAGTCACCATTCAAAGGGGCTTCAAAGGGGAGGGAGAGCTCCTGTCACAGATaGAAAACTAGGACAAACCCA | + |
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Preference number: 2 (lower is better) Translates to: WTLPMYKSPFKGASKGRESSCHR*KTRTNP Trigger: TGGGTTTGTCCTAGTTTTTCATCTGTGACAGGAGCT...CTCCCTCCCCTTTGAAGCCCCTTTGAATGGTGACTTGTACATAGGTAAAGTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR TCA 90 bp | AAAACACCCAGATTTCCTAGCTTAAGACTCTCAGATAGCACATTTGGGTTCCGCAATCATACCACGTATTaGCCCAGCAAGACTAGCTCT | + |
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Preference number: 2 (lower is better) Translates to: KTPRFPSLRLSDSTFGFRNHTTY*PSKTSS Trigger: AGAGCTAGTCTTGCTGGGTCAATACGTGGTATGATT...GCGGAACCCAAATGTGCTATCTGAGAGTCTTAAGCTAGGAAATCTGGGTGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR TCA 90 bp | AAAACACCCAGATTTCCTAGCTTAAGACTCTCAGATAGCACATTTGGGTTCCGCTGCCCGACATATGTATaGGAAGACAGACTGATCTTT | + |
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Preference number: 2 (lower is better) Translates to: KTPRFPSLRLSDSTFGFRCPTYV*EDRLIF Trigger: AAAGATCAGTCTGTCTTCTCATACATATGTCGGGCA...GCGGAACCCAAATGTGCTATCTGAGAGTCTTAAGCTAGGAAATCTGGGTGTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR GCA 90 bp | CACCGCCTCAGACAGTCTGTGAGGTGTAAGTTATTTGGCCAAGGCTTAAAACTTACATTTCTGCCTTTCTaGTTACAAACCACTACAGTG | + |
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Preference number: 2 (lower is better) Translates to: HRLRQSVRCKLFGQGLKLTFLPF*LQTTTV Trigger: CACTGTAGTGGTTTGTAAGCAGAAAGGCAGAAATGT...AAGTTTTAAGCCTTGGCCAAATAACTTACACCTCACAGACTGTCTGAGGCGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR GCA 90 bp | GTAGAGGAATGCAGCACAATTAGGAAATGTGATCCCACTAACAAAGGCTTTAAACCAAGCCACCCCCAATaGAGAGAGAAAACGAAACAT | + |
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Preference number: 2 (lower is better) Translates to: VEECSTIRKCDPTNKGFKPSHPQ*REKTKH Trigger: ATGTTTCGTTTTCTCTCTGCATTGGGGGTGGCTTGG...TTTAAAGCCTTTGTTAGTGGGATCACATTTCCTAATTGTGCTGCATTCCTCTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR GCA 90 bp | AAAGTGAAGCAGGCATCTATTTTCCAGGACTTAATCGTGATTAGAACACAAAGCAAGAACAGAGCTGACTaGAGAGTAGAGGAATGCAGC | + |
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Preference number: 2 (lower is better) Translates to: KVKQASIFQDLIVIRTQSKNRAD*RVEECS Trigger: GCTGCATTCCTCTACTCTGCAGTCAGCTCTGTTCTT...GCTTTGTGTTCTAATCACGATTAAGTCCTGGAAAATAGATGCCTGCTTCACTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR GCA 90 bp | AAAGTGAAGCAGGCATCTATTTTCCAGGACTTAATCGTGATTAGAACACAAAGCTCTGTTTGTGTCCTCTaGCTCCTCTTTTCTCAGCTG | + |
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Preference number: 2 (lower is better) Translates to: KVKQASIFQDLIVIRTQSSVCVL*LLFSQL Trigger: CAGCTGAGAAAAGAGGAGGCAGAGGACACAAACAGA...GCTTTGTGTTCTAATCACGATTAAGTCCTGGAAAATAGATGCCTGCTTCACTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR GCA 90 bp | TGGACTTTACCTATGTACAAGTCACCATTCAAAGGGGCTTCAAAGGGGAGGGAGACTAGCTCTGCATCCTaGTTAATGTTTATCAAAACT | + |
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Preference number: 2 (lower is better) Translates to: WTLPMYKSPFKGASKGRETSSAS*LMFIKT Trigger: AGTTTTGATAAACATTAAGCAGGATGCAGAGCTAGT...CTCCCTCCCCTTTGAAGCCCCTTTGAATGGTGACTTGTACATAGGTAAAGTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR TCA 90 bp | AAAGTGAAGCAGGCATCTATTTTCCAGGACTTAATCGTGATTAGAACACAAAGCTTACAAGAACAGAGCTaGCTGCAGAGTAGAGGAATG | + |
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Preference number: 2 (lower is better) Translates to: KVKQASIFQDLIVIRTQSLQEQS*LQSRGM Trigger: CATTCCTCTACTCTGCAGTCAGCTCTGTTCTTGTAA...GCTTTGTGTTCTAATCACGATTAAGTCCTGGAAAATAGATGCCTGCTTCACTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR CCA 90 bp | TTAATAATGAAATCTAAATGTTTAGTAAGCCTAGGTCAACCCAAAGAGGATGGCAACATACTGCCAAAGTaGCCCTTACACTGTAATCAC | + |
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Preference number: 2 (lower is better) Translates to: LIMKSKCLVSLGQPKEDGNILPK*PLHCNH Trigger: GTGATTACAGTGTAAGGGCCACTTTGGCAGTATGTT...GCCATCCTCTTTGGGTTGACCTAGGCTTACTAAACATTTAGATTTCATTATTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR CCA 90 bp | GTGATCCCACTAACAAAGGCTTTAAAAGCAACACATCACCACATTAGAGAAAATCAAGAGCTAATCAGTTaGTCCAAAAGAGCCAACAAA | + |
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Preference number: 2 (lower is better) Translates to: VIPLTKALKATHHHIRENQELIS*SKRANK Trigger: TTTGTTGGCTCTTTTGGACCAACTGATTAGCTCTTG...ATTTTCTCTAATGTGGTGATGTGTTGCTTTTAAAGCCTTTGTTAGTGGGATCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR TCA 90 bp | TTAATAATGAAATCTAAATGTTTAGTAAGCCTAGGTCAACCCAAAGAGGATGGCAAGGTAGGTCTGAAATaGAGTAAAAGCTCAAGTGAG | + |
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Preference number: 2 (lower is better) Translates to: LIMKSKCLVSLGQPKEDGKVGLK*SKSSSE Trigger: CTCACTTGAGCTTTTACTTCATTTCAGACCTACCTT...GCCATCCTCTTTGGGTTGACCTAGGCTTACTAAACATTTAGATTTCATTATTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR GCA 90 bp | ATATTGGCTTTCTCATTTTTCATCAGGCAGCACACCAATCTAAATGTATGGAAACCTATGACACATTTCTaGCTTTCTGCTTACAAACCA | + |
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Preference number: 2 (lower is better) Translates to: ILAFSFFIRQHTNLNVWKPMTHF*LSAYKP Trigger: TGGTTTGTAAGCAGAAAGGCAGAAATGTGTCATAGG...TTTCCATACATTTAGATTGGTGTGCTGCCTGATGAAAAATGAGAAAGCCAATAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR CAA 90 bp | AAACGAAACATTATAGGATCAAGTTCTGTGGCAAGAGCTAATCAGTaGGTCCAAAAGAGCCAACAAAAATTCCATAATTTCAGTCAGATA | + |
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Preference number: 2 (lower is better) Translates to: KRNIIGSSSVARANQ*VQKSQQKFHNFSQI Trigger: TATCTGACTGAAATTATGGAATTTTTGTTGGCTCTTTTGGACCAACTGATTAGCTCTTGCCACAGAACTTGATCCTATAATGTTTCGTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR CCA 72 bp | CCCGGCTTTCAAAGGAGCCGACAGACGGAAGACCTGTaGAGTGGCAGCCGACACTTGAGGCACAGGAGGAAG | + |
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Preference number: 3 (lower is better) Translates to: PGFQRSRQTEDL*SGSRHLRHRRK Trigger: CTTCCTCCTGTGCCTCAAGTGTCGGCTGCCACTCCACAGGTCTTCCGTCTGTCGGCTCCTTTGAAAGCCGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR CCA 72 bp | CTTTCAAAGGAGCCGACAGACGGAAGACCTGTGGAGTaGCAGCCGACACTTGAGGCACAGGAGGAAGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: LSKEPTDGRPVE*QPTLEAQEEGL Trigger: CAGCCCTTCCTCCTGTGCCTCAAGTGTCGGCTGCCACTCCACAGGTCTTCCGTCTGTCGGCTCCTTTGAAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR CCA 72 bp | CGAAGCATGTCCTCTTCACTCACAGCGTCGCCTCCTTaGTCGCTCCTACGTCCTCCTGAACTTGTGGTCGGT | + |
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Preference number: 3 (lower is better) Translates to: RSMSSSLTASPP*SLLRPPELVVG Trigger: ACCGACCACAAGTTCAGGAGGACGTAGGAGCGACCAAGGAGGCGACGCTGTGAGTGAAGAGGACATGCTTCG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160186.2 |
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| 3UTR GCA 72 bp | GTCGAGTCTGTGACCAGCCGTGGCAGTGGAGTCCCTTaGCCCTGTCTGTCCTGCAGTACTATAAACAGCAAC | + |
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Preference number: 3 (lower is better) Translates to: VESVTSRGSGVP*PCLSCSTINSN Trigger: GTTGCTGTTTATAGTACTGCAGGACAGACAGGGGCAAGGGACTCCACTGCCACGGCTGGTCACAGACTCGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR CCA 72 bp | CGCCTCCTTGGTCGCTCCTACGTCCTCCTGAACTTGTaGTCGGTCTTTCACGTGGATATGAAAGGGGTCCAG | + |
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Preference number: 3 (lower is better) Translates to: RLLGRSYVLLNL*SVFHVDMKGVQ Trigger: CTGGACCCCTTTCATATCCACGTGAAAGACCGACCACAAGTTCAGGAGGACGTAGGAGCGACCAAGGAGGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160186.2 |
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| 3UTR CCA 72 bp | ACAAATGGAAAAGTTAGTCGAGTCTGTGACCAGCCGTaGCAGTGGAGTCCCTTGCCCCTGTCTGTCCTGCAG | + |
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Preference number: 3 (lower is better) Translates to: TNGKVSRVCDQP*QWSPLPLSVLQ Trigger: CTGCAGGACAGACAGGGGCAAGGGACTCCACTGCCACGGCTGGTCACAGACTCGACTAACTTTTCCATTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR CCA 72 bp | ACACATCACCAGAACCCTCAGTGTTCAACAGGGCTTTaGAAGCCCGGCTTTCAAAGGAGCCGACAGACGGAA | + |
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Preference number: 3 (lower is better) Translates to: THHQNPQCSTGL*KPGFQRSRQTE Trigger: TTCCGTCTGTCGGCTCCTTTGAAAGCCGGGCTTCCAAAGCCCTGTTGAACACTGAGGGTTCTGGTGATGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR GCA 72 bp | AACCATTCAGAGACAAGTGAGTCCCACCTACCCAGCTaGATTTCCCACACACTTCTCACTAGTGCCTCACCC | + |
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Preference number: 3 (lower is better) Translates to: NHSETSESHLPS*ISHTLLTSASP Trigger: GGGTGAGGCACTAGTGAGAAGTGTGTGGGAAATGCAGCTGGGTAGGTGGGACTCACTTGTCTCTGAATGGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR CCA 72 bp | AACAAAAAGCAAACAAGGAAACCCCTGTTCTGGATCTaGGGATATAGCTCAGAGGTAGGGCGCTTGCCTAGC | + |
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Preference number: 3 (lower is better) Translates to: NKKQTRKPLFWI*GYSSEVGRLPS Trigger: GCTAGGCAAGCGCCCTACCTCTGAGCTATATCCCCAGATCCAGAACAGGGGTTTCCTTGTTTGCTTTTTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR TCA 72 bp | CCAGGAAATACCACCTTTAAACCATTCAGAGACAAGTaGGTCCCACCTACCCAGCTGCATTTCCCACACACT | + |
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Preference number: 3 (lower is better) Translates to: PGNTTFKPFRDK*VPPTQLHFPHT Trigger: AGTGTGTGGGAAATGCAGCTGGGTAGGTGGGACTCACTTGTCTCTGAATGGTTTAAAGGTGGTATTTCCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR GCA 72 bp | TGCATGTTACGTAGAAGGAAATCTGTTTGTGTCCTCTaGCTCCTCTTTTCTCAGCTGGAGAAGAGAGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: CMLRRRKSVCVL*LLFSQLEKRGR Trigger: CCTTCCTCTCTTCTCCAGCTGAGAAAAGAGGAGGCAGAGGACACAAACAGATTTCCTTCTACGTAACATGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR GCA 72 bp | CATGTCTCTCTAAACGTAGGTTACACTGTGAGCCACTaGTCTCCTTTTGCAGTGTTAGAGACTGAACCCAAG | + |
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Preference number: 3 (lower is better) Translates to: HVSLNVGYTVSH*SPFAVLETEPK Trigger: CTTGGGTTCAGTCTCTAACACTGCAAAAGGAGAGCAGTGGCTCACAGTGTAACCTACGTTTAGAGAGACATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR GCA 72 bp | GCAGAGTTGAGTCCTGAGGGAACTGCTCGGCCACAGTaGATCACATTGACAGAAGACAATGCCTTTTATTTT | + |
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Preference number: 3 (lower is better) Translates to: AELSPEGTARPQ*ITLTEDNAFYF Trigger: AAAATAAAAGGCATTGTCTTCTGTCAATGTGATGCACTGTGGCCGAGCAGTTCCCTCAGGACTCAACTCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR GCA 72 bp | GCTGGCCTTGAACTCAAGAAGAAATCTGCCTACCTCTaGAGATTTCTCCTAAGTACCAGCATCAAAGGAACA | + |
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Preference number: 3 (lower is better) Translates to: AGLELKKKSAYL*RFLLSTSIKGT Trigger: TGTTCCTTTGATGCTGGTACTTAGGAGAAATCTGCAGAGGTAGGCAGATTTCTTCTTGAGTTCAAGGCCAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR CCA 72 bp | CTAAGTACCAGCATCAAAGGAACACAGCACCATGTCTaGCCTTCCAAAGGGTCCTTACACTTGGTTATAACA | + |
|
Preference number: 3 (lower is better) Translates to: LSTSIKGTQHHV*PSKGSLHLVIT Trigger: TGTTATAACCAAGTGTAAGGACCCTTTGGAAGGCCAGACATGGTGCTGTGTTCCTTTGATGCTGGTACTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR TCA 72 bp | AAAGTCTGGAACTTACTATGTAGACCAGGCTGGCCTTaGACTCAAGAAGAAATCTGCCTACCTCTGCAGATT | + |
|
Preference number: 3 (lower is better) Translates to: KVWNLLCRPGWP*TQEEICLPLQI Trigger: AATCTGCAGAGGTAGGCAGATTTCTTCTTGAGTTCAAGGCCAGCCTGGTCTACATAGTAAGTTCCAGACTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR TCA 72 bp | TTAATCGTGATTAGAACACAAAGCTCCTGTCACAGATaGAAAACTAGGACAAACCCACCACCAGGACTGAAG | + |
|
Preference number: 3 (lower is better) Translates to: LIVIRTQSSCHR*KTRTNPPPGLK Trigger: CTTCAGTCCTGGTGGTGGGTTTGTCCTAGTTTTTCATCTGTGACAGGAGCTTTGTGTTCTAATCACGATTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR CAA 90 bp | GTAGAGGAATGCAGCACAATTAGGAAATGTGATCCCACTAACAAAGGCTTTAAATTGCTGACTGCCTCTTaGGCTAGTATCTCGATCGTT | + |
|
Preference number: 3 (lower is better) Translates to: VEECSTIRKCDPTNKGFKLLTAS*ASISIV Trigger: AACGATCGAGATACTAGCCAAAGAGGCAGTCAGCAA...TTTAAAGCCTTTGTTAGTGGGATCACATTTCCTAATTGTGCTGCATTCCTCTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR GCA 72 bp | GTATCTCGATCGTTCCTTAGTCCTATGACACATTTCTaGCTTTCTGCTTACAAACCACTACAGTGTCTTTAT | + |
|
Preference number: 3 (lower is better) Translates to: VSRSFLSPMTHF*LSAYKPLQCLY Trigger: ATAAAGACACTGTAGTGGTTTGTAAGCAGAAAGGCAGAAATGTGTCATAGGACTAAGGAACGATCGAGATAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| 3UTR-3UTR CAA 90 bp | CTTACTTCACTCAACCTGATATTAAGTAAAACAAAGCAGACTACTCCTTTGAGAGGCTACAATCTCTTCTaGGACTTTACCTATGTACAA | + |
|
Preference number: 3 (lower is better) Translates to: LTSLNLILSKTKQTTPLRGYNLF*DFTYVQ Trigger: TTGTACATAGGTAAAGTCCAAGAAGAGATTGTAGCC...TCTCAAAGGAGTAGTCTGCTTTGTTTTACTTAATATCAGGTTGAGTGAAGTAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| 3UTR GCA 72 bp | GGCAATTCAATGGTGATTTTGGATCTGCCTGGACAATaGCATAAATATAACAAACTAAAAAGCTTCACTCAA | + |
|
Preference number: 3 (lower is better) Translates to: GNSMVILDLPGQ*HKYNKLKSFTQ Trigger: TTGAGTGAAGCTTTTTAGTTTGTTATATTTATGGCATTGTCCAGGCAGATCCAAAATCACCATTGAATTGCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| 3UTR TCA 72 bp | TTATGGTTTAGGCCAAAGGACAGCTATTCTGAATTTTaGAACATAGATAAGCTCATGACATCCCAAAATATG | + |
|
Preference number: 3 (lower is better) Translates to: LWFRPKDSYSEF*NIDKLMTSQNM Trigger: CATATTTTGGGATGTCATGAGCTTATCTATGTTTCAAAATTCAGAATAGCTGTCCTTTGGCCTAAACCATAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| 3UTR CAA 72 bp | CGACAGACGGAAGACCTGTGGAGTGGCAGCCGACACTaGAGGCACAGGAGGAAGGGCTGCAGAGTTGAGTCC | + |
|
Preference number: 4 (lower is better) Translates to: RQTEDLWSGSRH*RHRRKGCRVES Trigger: GGACTCAACTCTGCAGCCCTTCCTCCTGTGCCTCAAGTGTCGGCTGCCACTCCACAGGTCTTCCGTCTGTCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| 3UTR CAA 72 bp | CGTCGCCTCCTTGGTCGCTCCTACGTCCTCCTGAACTaGTGGTCGGTCTTTCACGTGGATATGAAAGGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: RRLLGRSYVLLN*WSVFHVDMKGV Trigger: GACCCCTTTCATATCCACGTGAAAGACCGACCACAAGTTCAGGAGGACGTAGGAGCGACCAAGGAGGCGACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160186.2 |
||
| 3UTR CAA 72 bp | CACACATCACCAGAACCCTCAGTGTTCAACAGGGCTTaGGAAGCCCGGCTTTCAAAGGAGCCGACAGACGGA | + |
|
Preference number: 4 (lower is better) Translates to: HTSPEPSVFNRA*EARLSKEPTDG Trigger: TCCGTCTGTCGGCTCCTTTGAAAGCCGGGCTTCCAAAGCCCTGTTGAACACTGAGGGTTCTGGTGATGTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS-3UTR CCA 90 bp | CGCCTCCTTGGTCGCTCCTACGTCCTCCTGAACTTGTGGTCGGTCTTTCACGTGTTTCCTGGCGACTTATaGCTAGAGCCCTCTGTAAAT | + |
|
Preference number: 4 (lower is better) Translates to: RLLGRSYVLLNLWSVFHVFPGDL*LEPSVN Trigger: ATTTACAGAGGGCTCTAGCCATAAGTCGCCAGGAAA...CACGTGAAAGACCGACCACAAGTTCAGGAGGACGTAGGAGCGACCAAGGAGGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160186.2 |
||
| CDS-3UTR TCA 90 bp | CCTAAGTACCAGCATCAAAGGAACACAGCACCATGTCTGGCCTTCCAAAGGGTCGCATCTGTTGGACCTTaGTCATCTGCAAAAGTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: PKYQHQRNTAPCLAFQRVASVGP*SSAKVG Trigger: ACCAACTTTTGCAGATGATCAAGGTCCAACAGATGC...GACCCTTTGGAAGGCCAGACATGGTGCTGTGTTCCTTTGATGCTGGTACTTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS-3UTR CCA 90 bp | TGGACTTTACCTATGTACAAGTCACCATTCAAAGGGGCTTCAAAGGGGAGGGAGGTCCTCCTGAACTTGTaGTCGGTCTTTCACGTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: WTLPMYKSPFKGASKGREVLLNL*SVFHVD Trigger: ATCCACGTGAAAGACCGACCACAAGTTCAGGAGGAC...CTCCCTCCCCTTTGAAGCCCCTTTGAATGGTGACTTGTACATAGGTAAAGTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS-3UTR GCA 90 bp | TGGACTTTACCTATGTACAAGTCACCATTCAAAGGGGCTTCAAAGGGGAGGGAGTCTACCTCCTGCTGCTaGTGCTGTTGCTTTTCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: WTLPMYKSPFKGASKGRESTSCC*CCCFSK Trigger: CTTTGAAAAGCAACAGCAGCAGCAGCAGGAGGTAGA...CTCCCTCCCCTTTGAAGCCCCTTTGAATGGTGACTTGTACATAGGTAAAGTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS-3UTR GCA 90 bp | AAAACACCCAGATTTCCTAGCTTAAGACTCTCAGATAGCACATTTGGGTTCCGCCGGTCTACCTCCTGCTaGTGCTGCTGTTGCTTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: KTPRFPSLRLSDSTFGFRRSTSC*CCCCFS Trigger: TGAAAAGCAACAGCAGCAGCAGCAGGAGGTAGACCG...GCGGAACCCAAATGTGCTATCTGAGAGTCTTAAGCTAGGAAATCTGGGTGTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS-3UTR TCA 90 bp | TGGACTTTACCTATGTACAAGTCACCATTCAAAGGGGCTTCAAAGGGGAGGGAGTTATTCAGGCAATGCTaGGCACAAAGTGAGCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: WTLPMYKSPFKGASKGRELFRQC*AQSEPS Trigger: AGAAGGCTCACTTTGTGCTCAGCATTGCCTGAATAA...CTCCCTCCCCTTTGAAGCCCCTTTGAATGGTGACTTGTACATAGGTAAAGTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| 3UTR CAA 72 bp | AGTCCTGAGGGAACTGCTCGGCCACAGTGCATCACATaGACAGAAGACAATGCCTTTTATTTTCACGGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: SPEGTARPQCIT*TEDNAFYFHGF Trigger: AAAGCCGTGAAAATAAAAGGCATTGTCTTCTGTCAATGTGATGCACTGTGGCCGAGCAGTTCCCTCAGGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS-3UTR GCA 90 bp | TGGACTTTACCTATGTACAAGTCACCATTCAAAGGGGCTTCAAAGGGGAGGGAGCTGCTCTTTCAGATGTaGAAGTTCCTCTCCAATAAG | + |
|
Preference number: 4 (lower is better) Translates to: WTLPMYKSPFKGASKGRELLFQM*KFLSNK Trigger: CTTATTGGAGAGGAACTTGCACATCTGAAAGAGCAG...CTCCCTCCCCTTTGAAGCCCCTTTGAATGGTGACTTGTACATAGGTAAAGTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS-3UTR GCA 90 bp | AAAGTGAAGCAGGCATCTATTTTCCAGGACTTAATCGTGATTAGAACACAAAGCAGACATGGTCACAGCTaGCCGAAGCATGTCCTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: KVKQASIFQDLIVIRTQSRHGHS*PKHVLF Trigger: GAAGAGGACATGCTTCGGGCAGCTGTGACCATGTCT...GCTTTGTGTTCTAATCACGATTAAGTCCTGGAAAATAGATGCCTGCTTCACTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS-3UTR TCA 90 bp | CTTACTTCACTCAACCTGATATTAAGTAAAACAAAGCAGACTACTCCTTTGAGAGCTCCAGGTCTGCTTTaGGGGCACTCTGCTCTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: LTSLNLILSKTKQTTPLRAPGLL*GHSALS Trigger: TGAAAGAGCAGAGTGCCCTCAAAGCAGACCTGGAGC...TCTCAAAGGAGTAGTCTGCTTTGTTTTACTTAATATCAGGTTGAGTGAAGTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS-3UTR TCA 90 bp | CTTACTTCACTCAACCTGATATTAAGTAAAACAAAGCAGACTACTCCTTTGAGATCTTTCACGTGGATATaGAAGGGGTCCAGGTCGGTC | + |
|
Preference number: 4 (lower is better) Translates to: LTSLNLILSKTKQTTPLRSFTWI*KGSRSV Trigger: GACCGACCTGGACCCCTTTCATATCCACGTGAAAGA...TCTCAAAGGAGTAGTCTGCTTTGTTTTACTTAATATCAGGTTGAGTGAAGTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS-3UTR GCA 90 bp | ATATTGGCTTTCTCATTTTTCATCAGGCAGCACACCAATCTAAATGTATGGAAAGCTTTGAGGGCACTCTaGTCTTTCAGATGTGCAAGT | + |
|
Preference number: 4 (lower is better) Translates to: ILAFSFFIRQHTNLNVWKALRAL*SFRCAS Trigger: ACTTGCACATCTGAAAGAGCAGAGTGCCCTCAAAGC...TTTCCATACATTTAGATTGGTGTGCTGCCTGATGAAAAATGAGAAAGCCAATAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| 3UTR CAA 72 bp | GGTCAACCCAAAGAGGATGGCAATTCAATGGTGATTTaGGATCTGCCTGGACAATGCCATAAATATAACAAA | + |
|
Preference number: 4 (lower is better) Translates to: GQPKEDGNSMVI*DLPGQCHKYNK Trigger: TTTGTTATATTTATGGCATTGTCCAGGCAGATCCAAAATCACCATTGAATTGCCATCCTCTTTGGGTTGACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| CDS-3UTR GCA 90 bp | GTAGAGGAATGCAGCACAATTAGGAAATGTGATCCCACTAACAAAGGCTTTAAAATAAGTTTTGGTCGATaGATCTGTTGGACCTTGATC | + |
|
Preference number: 4 (lower is better) Translates to: VEECSTIRKCDPTNKGFKISFGR*ICWTLI Trigger: GATCAAGGTCCAACAGATGCATCGACCAAAACTTAT...TTTAAAGCCTTTGTTAGTGGGATCACATTTCCTAATTGTGCTGCATTCCTCTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| CDS-3UTR CCA 90 bp | TTAATAATGAAATCTAAATGTTTAGTAAGCCTAGGTCAACCCAAAGAGGATGGCGGTCGATGCATCTGTTaGACCTTGATCATCTGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: LIMKSKCLVSLGQPKEDGGRCIC*TLIICK Trigger: TTTGCAGATGATCAAGGTCCAACAGATGCATCGACC...GCCATCCTCTTTGGGTTGACCTAGGCTTACTAAACATTTAGATTTCATTATTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS-3UTR CCA 90 bp | ATATTGGCTTTCTCATTTTTCATCAGGCAGCACACCAATCTAAATGTATGGAAATTTCCTGGCGACTTATaGCTAGAGCCCTCTGTAAAT | + |
|
Preference number: 4 (lower is better) Translates to: ILAFSFFIRQHTNLNVWKFPGDL*LEPSVN Trigger: ATTTACAGAGGGCTCTAGCCATAAGTCGCCAGGAAA...TTTCCATACATTTAGATTGGTGTGCTGCCTGATGAAAAATGAGAAAGCCAATAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| CDS-3UTR TCA 90 bp | ATATTGGCTTTCTCATTTTTCATCAGGCAGCACACCAATCTAAATGTATGGAAAAGAGAGATCTGGACTTaGTGTCTGTGGACTATTTTC | + |
|
Preference number: 4 (lower is better) Translates to: ILAFSFFIRQHTNLNVWKREIWT*CLWTIF Trigger: GAAAATAGTCCACAGACATCAAGTCCAGATCTCTCT...TTTCCATACATTTAGATTGGTGTGCTGCCTGATGAAAAATGAGAAAGCCAATAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| CDS-3UTR TCA 90 bp | TTAATAATGAAATCTAAATGTTTAGTAAGCCTAGGTCAACCCAAAGAGGATGGCGCATTGCTTATAACTTaGATAGAGAAAAAGCCGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LIMKSKCLVSLGQPKEDGALLIT*IEKKPL Trigger: CAGCGGCTTTTTCTCTATTCAAGTTATAAGCAATGC...GCCATCCTCTTTGGGTTGACCTAGGCTTACTAAACATTTAGATTTCATTATTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| 3UTR CAA 72 bp | GCAGACTACTCCTTTGAGAATTCATGCTCATTAACTTaGGCTTCATCAAGAAAAATCAAGTTTTCAGGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: ADYSFENSCSLT*ASSRKIKFSGK Trigger: TTTTCCTGAAAACTTGATTTTTCTTGATGAAGCCAAAGTTAATGAGCATGAATTCTCAAAGGAGTAGTCTGC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| CDS-3UTR GCA 90 bp | TTAATAATGAAATCTAAATGTTTAGTAAGCCTAGGTCAACCCAAAGAGGATGGCCTAAAATACTCTCCTTaGAATAGGTTATTCAGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: LIMKSKCLVSLGQPKEDGLKYSP*NRLFRQ Trigger: TTGCCTGAATAACCTATTGCAAGGAGAGTATTTTAG...GCCATCCTCTTTGGGTTGACCTAGGCTTACTAAACATTTAGATTTCATTATTAA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
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| CDS-3UTR CAA 90 bp | CCTAAGTACCAGCATCAAAGGAACACAGCACCATGTCTGGCCTTCCAAAGGGTCCTGCTGCTGCTGCTGTaGCTTTTCAAAGTAGGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: PKYQHQRNTAPCLAFQRVLLLLL*LFKVGF Trigger: GAAGCCTACTTTGAAAAGCAACAGCAGCAGCAGCAG...GACCCTTTGGAAGGCCAGACATGGTGCTGTGTTCCTTTGATGCTGGTACTTAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS-3UTR CAA 90 bp | TGGACTTTACCTATGTACAAGTCACCATTCAAAGGGGCTTCAAAGGGGAGGGAGTGGTCGATGCATCTGTaGGACCTTGATCATCTGCAA | + |
|
Preference number: 5 (lower is better) Translates to: WTLPMYKSPFKGASKGREWSMHL*DLDHLQ Trigger: TTGCAGATGATCAAGGTCCAACAGATGCATCGACCA...CTCCCTCCCCTTTGAAGCCCCTTTGAATGGTGACTTGTACATAGGTAAAGTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS-3UTR CAA 90 bp | AAAGTGAAGCAGGCATCTATTTTCCAGGACTTAATCGTGATTAGAACACAAAGCCGCTCCAGGTCTGCTTaGAGGGCACTCTGCTCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: KVKQASIFQDLIVIRTQSRSRSA*RALCSF Trigger: GAAAGAGCAGAGTGCCCTCAAAGCAGACCTGGAGCG...GCTTTGTGTTCTAATCACGATTAAGTCCTGGAAAATAGATGCCTGCTTCACTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS-3UTR CAA 90 bp | CACCGCCTCAGACAGTCTGTGAGGTGTAAGTTATTTGGCCAAGGCTTAAAACTTTGCATCTGTTGGACCTaGATCATCTGCAAAAGTTGG | + |
|
Preference number: 5 (lower is better) Translates to: HRLRQSVRCKLFGQGLKLCICWT*IICKSW Trigger: CCAACTTTTGCAGATGATCAAGGTCCAACAGATGCA...AAGTTTTAAGCCTTGGCCAAATAACTTACACCTCACAGACTGTCTGAGGCGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021606.12 |
||
| CDS CAA 72 bp | CCATCAGCTGCTTCTAAGACGCGCTCCAGGTCTGCTTaGAGGGCACTCTGCTCTTTCAGATGTGCAAGTTCC | + |
|
Preference number: 6 (lower is better) Translates to: PSAASKTRSRSA*RALCSFRCASS Trigger: GGAACTTGCACATCTGAAAGAGCAGAGTGCCCTCAAAGCAGACCTGGAGCGCGTCTTAGAAGCAGCTGATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000021606.12 ENSMUST00000159883.2 ENSMUST00000160251.8 ENSMUST00000161011.8 |
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| CDS CAA 90 bp | ATGCCCGACCCATCAGCTGCTTCTAAGACGCGCTCCAGGTCTGCTTaGAGGGCACTCTGCTCTTTCAGATGTGCAAGTTCCTCTCCAATA | + |
|
Preference number: 6 (lower is better) Translates to: MPDPSAASKTRSRSA*RALCSFRCASSSPI Trigger: TATTGGAGAGGAACTTGCACATCTGAAAGAGCAGAGTGCCCTCAAAGCAGACCTGGAGCGCGTCTTAGAAGCAGCTGATGGGTCGGGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000021606.12 ENSMUST00000159883.2 ENSMUST00000160251.8 ENSMUST00000161011.8 |
||
| CDS GCA 72 bp | GAGCCCTCTGTAAATCATCCTCATCTTCATCAAATATaGCCGACCCATCAGCTGCTTCTAAGACGCGCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: EPSVNHPHLHQI*PTHQLLLRRAP Trigger: TGGAGCGCGTCTTAGAAGCAGCTGATGGGTCGGGCATATTTGATGAAGATGAGGATGATTTACAGAGGGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000021606.12 ENSMUST00000159883.2 ENSMUST00000160251.8 ENSMUST00000161011.8 |
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| CDS CAA 72 bp | CTGTGGACTATTTTCACACATACTTCTGGAACTACCTaGCATACTGAGCTGAATGGCCCTGCGGAGATCAGC | + |
|
Preference number: 6 (lower is better) Translates to: LWTIFTHTSGTT*HTELNGPAEIS Trigger: GCTGATCTCCGCAGGGCCATTCAGCTCAGTATGCAAGGTAGTTCCAGAAGTATGTGTGAAAATAGTCCACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000021606.12 ENSMUST00000159883.2 ENSMUST00000160186.2 ENSMUST00000161011.8 |
||
| CDS CAA 72 bp | ATGTCTGTGGACTATTTTCACACATACTTCTGGAACTaGCATACTGAGCTGAATGGCCCTGCGGAGATCAGC | + |
|
Preference number: 6 (lower is better) Translates to: MSVDYFHTYFWN*HTELNGPAEIS Trigger: GCTGATCTCCGCAGGGCCATTCAGCTCAGTATGCAAGTTCCAGAAGTATGTGTGAAAATAGTCCACAGACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160251.8 |
||
| CDS TCA 72 bp | GGACTATTTTCACACATACTTCTGGAACTTGCATACTaGGCTGAATGGCCCTGCGGAGATCAGCTTCTTCAT | + |
|
Preference number: 6 (lower is better) Translates to: GLFSHILLELAY*AEWPCGDQLLH Trigger: ATGAAGAAGCTGATCTCCGCAGGGCCATTCAGCTCAGTATGCAAGTTCCAGAAGTATGTGTGAAAATAGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160251.8 |
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