RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATXN2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042605

Ensembl transcript IDs: ENSMUST00000051950.14, ENSMUST00000160220.2, ENSMUST00000160462.2, ENSMUST00000160821.6, ENSMUST00000161064.8, ENSMUST00000161159.8, ENSMUST00000162327.8, ENSMUST00000199864.2, ENSMUST00000225761.2

Found 586 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATaGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACA +
Preference number: 1 (lower is better)
Translates to: AELGTCRTLQQHMEL*NSHKSLHASTRSKT
Trigger: TGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
3UTR-3UTR CCA 90 bp ACTGTACATGAGCCTGAGGTACGTGGGCCATGTGGGGTGGGGTGGTGTATGCCGTGGGAAACTGCTCTGTaGAGACTGTGTATTAGAGGC +
Preference number: 2 (lower is better)
Translates to: TVHEPEVRGPCGVGWCMPWETAL*RLCIRG
Trigger: GCCTCTAATACACAGTCTCCACAGAGCAGTTTCCCA...CGGCATACACCACCCCACCCCACATGGCCCACGTACCTCAGGCTCATGTACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
3UTR-3UTR CCA 90 bp TCATTGGCGCATGGGCAGTTGGATGAGAAGGAACCATTCCTGACTGTACATGAGGGTACGTGGGCCATGTaGGGTGGGGTGGTGTATGCC +
Preference number: 2 (lower is better)
Translates to: SLAHGQLDEKEPFLTVHEGTWAM*GGVVYA
Trigger: GGCATACACCACCCCACCCCACATGGCCCACGTACC...CTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
3UTR-3UTR CCA 90 bp GTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCAGGGAGGAGGGGATTTaGCCTTTCGGTTCCTCCAGG +
Preference number: 2 (lower is better)
Translates to: VLAGPCNSTWNYGTATSPREEGI*PFGSSR
Trigger: CCTGGAGGAACCGAAAGGCCAAATCCCCTCCTCCCT...GGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
3UTR-3UTR GCA 90 bp GAGAAGGAACCATTCCTGACTGTACATGAGCCTGAGGTACGTGGGCCATGTGGGGTGCTGCTGGGAAACTaGTCTGTGGAGACTGTGTAT +
Preference number: 2 (lower is better)
Translates to: EKEPFLTVHEPEVRGPCGVLLGN*SVETVY
Trigger: ATACACAGTCTCCACAGAGCAGTTTCCCAGCAGCAC...CCCACATGGCCCACGTACCTCAGGCTCATGTACAGTCAGGAATGGTTCCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
3UTR-3UTR CCA 90 bp GAGAAGGAACCATTCCTGACTGTACATGAGCCTGAGGTACGTGGGCCATGTGGGTGTCTGTTGTGCTGCTaGGAAACTGCTCTGTGGAGA +
Preference number: 2 (lower is better)
Translates to: EKEPFLTVHEPEVRGPCGCLLCC*ETALWR
Trigger: TCTCCACAGAGCAGTTTCCCAGCAGCACAACAGACA...CCCACATGGCCCACGTACCTCAGGCTCATGTACAGTCAGGAATGGTTCCTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
3UTR-3UTR CCA 90 bp TCATTGGCGCATGGGCAGTTGGATGAGAAGGAACCATTCCTGACTGTACATGAGCCATGTGGGGTGGGGTaGTGTATGCCGGCTGAACAT +
Preference number: 2 (lower is better)
Translates to: SLAHGQLDEKEPFLTVHEPCGVG*CMPAEH
Trigger: ATGTTCAGCCGGCATACACCACCCCACCCCACATGG...CTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
3UTR-3UTR CCA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTTCTGTGCTTCCGGTTaGCAGAAGCAGGAGAAGGGA +
Preference number: 2 (lower is better)
Translates to: RTLQQHMELWNSHKSLHAFCASG*QKQEKG
Trigger: TCCCTTCTCCTGCTTCTGCCAACCGGAAGCACAGAA...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
3UTR-3UTR TCA 90 bp TCATTGGCGCATGGGCAGTTGGATGAGAAGGAACCATTCCTGACTGTACATGAGGAGAAGGGTGGATGGTaGAGACTGTCTGTTGTGCTG +
Preference number: 2 (lower is better)
Translates to: SLAHGQLDEKEPFLTVHEEKGGW*RLSVVL
Trigger: CAGCACAACAGACAGTCTTCACCATCCACCCTTCTC...CTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
3UTR-3UTR GCA 90 bp TCATTGGCGCATGGGCAGTTGGATGAGAAGGAACCATTCCTGACTGTACATGAGGACTGTCTGTTGTGCTaGTGGGAAACTGCTCTGTGG +
Preference number: 2 (lower is better)
Translates to: SLAHGQLDEKEPFLTVHEDCLLC*WETALW
Trigger: CCACAGAGCAGTTTCCCAGCAGCACAACAGACAGTC...CTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
3UTR-3UTR CCA 90 bp CCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTTCTGTGCTTCCGGTTaGCAGAAGCAGGAGAAGGGA +
Preference number: 2 (lower is better)
Translates to: PATAHGIMEQPQVPTCLYFCASG*QKQEKG
Trigger: TCCCTTCTCCTGCTTCTGCCAACCGGAAGCACAGAA...GTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
3UTR-3UTR GCA 90 bp TCATTGGCGCATGGGCAGTTGGATGAGAAGGAACCATTCCTGACTGTACATGAGGAAGACTGTCTGTTGTaGTGCTGGGAAACTGCTCTG +
Preference number: 2 (lower is better)
Translates to: SLAHGQLDEKEPFLTVHEEDCLL*CWETAL
Trigger: CAGAGCAGTTTCCCAGCAGCACAACAGACAGTCTTC...CTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
3UTR-3UTR GCA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTAGTTCTAGTTTTCTGTaGTTCCGGTTGGCAGAAGCA +
Preference number: 2 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCSSSFL*FRLAEA
Trigger: TGCTTCTGCCAACCGGAAGCACAGAAAACTAGAACT...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
3UTR-3UTR CCA 90 bp AACAAAATCAATGAAGTTCTAGTTTTCTGTGCTTCCGGTTGGCAGAAGCAGGAGAGGGAGGAGGGGATTTaGCCTTTCGGTTCCTCCAGG +
Preference number: 2 (lower is better)
Translates to: NKINEVLVFCASGWQKQEREEGI*PFGSSR
Trigger: CCTGGAGGAACCGAAAGGCCAAATCCCCTCCTCCCT...CTCCTGCTTCTGCCAACCGGAAGCACAGAAAACTAGAACTTCATTGATTTTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
3UTR CCA 72 bp CTGTACATGAGCCTGAGGTACGTGGGCCATGTGGGGTaGGGTGGTGTATGCCGGCTGAACATGAGAAGGGTG +
Preference number: 3 (lower is better)
Translates to: LYMSLRYVGHVG*GGVCRLNMRRV
Trigger: CACCCTTCTCATGTTCAGCCGGCATACACCACCCCACCCCACATGGCCCACGTACCTCAGGCTCATGTACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
3UTR-3UTR CAA 90 bp TCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAAAGGGAGGAGGGGATTaGGCCTTTCGGTTCCTCCAG +
Preference number: 3 (lower is better)
Translates to: SLHASTRSKTSSTASELLKGGGD*AFRFLQ
Trigger: CTGGAGGAACCGAAAGGCCAAATCCCCTCCTCCCTT...TAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
3UTR-3UTR CAA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTTTCTGTGCTTCCGGTaGGCAGAAGCAGGAGAAGGG +
Preference number: 3 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCFLCFR*AEAGEG
Trigger: CCCTTCTCCTGCTTCTGCCAACCGGAAGCACAGAAA...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
3UTR-3UTR CAA 90 bp GCGCATGGGCAGTTGGATGAGAAGGAACCATTCCTGACTGTACATGAGCCTGAGGGTGAAGACTGTCTGTaGTGCTGCTGGGAAACTGCT +
Preference number: 3 (lower is better)
Translates to: AHGQLDEKEPFLTVHEPEGEDCL*CCWETA
Trigger: AGCAGTTTCCCAGCAGCACAACAGACAGTCTTCACC...CTCAGGCTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
3UTR CCA 72 bp CAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATaGAATTATGGAACAGCCACAAGTCCCTACATGCCT +
Preference number: 3 (lower is better)
Translates to: QSWVLAGPCNST*NYGTATSPYMP
Trigger: AGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
3UTR-3UTR CAA 90 bp CCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTTTCTGTGCTTCCGGTaGGCAGAAGCAGGAGAAGGG +
Preference number: 3 (lower is better)
Translates to: PATAHGIMEQPQVPTCLYFLCFR*AEAGEG
Trigger: CCCTTCTCCTGCTTCTGCCAACCGGAAGCACAGAAA...GTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
3UTR-3UTR CAA 90 bp ACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAAAAGGGAGGAGGGGATTaGGCCTTTCGGTTCCTCCAG +
Preference number: 3 (lower is better)
Translates to: TWNYGTATSPYMPLLGPKKGGGD*AFRFLQ
Trigger: CTGGAGGAACCGAAAGGCCAAATCCCCTCCTCCCTT...TTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
3UTR CCA 72 bp AGAAGGGTGGATGGTGAAGACTGTCTGTTGTGCTGCTaGGAAACTGCTCTGTGGAGACTGTGTATTAGAGGC +
Preference number: 3 (lower is better)
Translates to: RRVDGEDCLLCC*ETALWRLCIRG
Trigger: GCCTCTAATACACAGTCTCCACAGAGCAGTTTCCCAGCAGCACAACAGACAGTCTTCACCATCCACCCTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
3UTR GCA 72 bp GCACATGGAATTATGGAACAGCCACAAGTCCCTACATaGCTCTACTCGGTCCAAAACATCCTCCACTGCAAG +
Preference number: 3 (lower is better)
Translates to: AHGIMEQPQVPT*LYSVQNILHCK
Trigger: CTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
3UTR GCA 72 bp ATGAGAAGGGTGGATGGTGAAGACTGTCTGTTGTGCTaGTGGGAAACTGCTCTGTGGAGACTGTGTATTAGA +
Preference number: 3 (lower is better)
Translates to: MRRVDGEDCLLC*WETALWRLCIR
Trigger: TCTAATACACAGTCTCCACAGAGCAGTTTCCCAGCAGCACAACAGACAGTCTTCACCATCCACCCTTCTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
CDS-3UTR TCA 90 bp ACTGTACATGAGCCTGAGGTACGTGGGCCATGTGGGGTGGGGTGGTGTATGCCGGGATGTGCATACTGCTaGGCGAGGGAGCCGGTGGAA +
Preference number: 4 (lower is better)
Translates to: TVHEPEVRGPCGVGWCMPGCAYC*AREPVE
Trigger: TTCCACCGGCTCCCTCGCTCAGCAGTATGCACATCC...CGGCATACACCACCCCACCCCACATGGCCCACGTACCTCAGGCTCATGTACAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
CDS-3UTR GCA 90 bp GCAAGCAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAAGCGGGCGGCTGCGGCTaGGGCTTCAGCGACATGGTG +
Preference number: 4 (lower is better)
Translates to: ASRAGYLQDPATAHGIMEAGGCG*GFSDMV
Trigger: CACCATGTCGCTGAAGCCGCAGCCGCAGCCGCCCGC...TTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTGCTTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR GCA 90 bp GGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGGGCCGTGAGCTCCCCTaGATCCCAGGGCTCCAGGTC +
Preference number: 4 (lower is better)
Translates to: GTATSPYMPLLGPKHPPLGRELP*IPGLQV
Trigger: GACCTGGAGCCCTGGGATGCAGGGGAGCTCACGGCC...CAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp ACTGTACATGAGCCTGAGGTACGTGGGCCATGTGGGGTGGGGTGGTGTATGCCGGGTGCTGAACAGGACTaGGTGCAGGGTGACTTCCAC +
Preference number: 4 (lower is better)
Translates to: TVHEPEVRGPCGVGWCMPGAEQD*VQGDFH
Trigger: GTGGAAGTCACCCTGCACCCAGTCCTGTTCAGCACC...CGGCATACACCACCCCACCCCACATGGCCCACGTACCTCAGGCTCATGTACAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
CDS-3UTR TCA 90 bp GGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGGGGCTGGGTTGTGCTTaGGGCCGAGGTGACGTTGGG +
Preference number: 4 (lower is better)
Translates to: GTATSPYMPLLGPKHPPLGLGCA*GRGDVG
Trigger: CCCAACGTCACCTCGGCCTCAAGCACAACCCAGCCC...CAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp ACTGTACATGAGCCTGAGGTACGTGGGCCATGTGGGGTGGGGTGGTGTATGCCGCTGAACAGGACTGGGTaGAGGGTGACTTCCACCATG +
Preference number: 4 (lower is better)
Translates to: TVHEPEVRGPCGVGWCMPLNRTG*RVTSTM
Trigger: CATGGTGGAAGTCACCCTGCACCCAGTCCTGTTCAG...CGGCATACACCACCCCACCCCACATGGCCCACGTACCTCAGGCTCATGTACAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
CDS-3UTR CCA 90 bp GAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCGCTGTCCGGTGGGAGTaGCCGAAGGCTGAGGATGGG +
Preference number: 4 (lower is better)
Translates to: EQPQVPTCLYSVQNILHCAVRWE*PKAEDG
Trigger: CCCATCCTCAGCCTTCGGCCACTCCCACCGGACAGC...GCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp GCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGGGCTGGGTTGTGCTTaGGGCCGAGGTGACGTTGGG +
Preference number: 4 (lower is better)
Translates to: AGYLQDPATAHGIMEQPQGLGCA*GRGDVG
Trigger: CCCAACGTCACCTCGGCCTCAAGCACAACCCAGCCC...TTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCGGGCTGGGTTGTGCTTaGGGCCGAGGTGACGTTGGG +
Preference number: 4 (lower is better)
Translates to: QHMELWNSHKSLHASTRSGLGCA*GRGDVG
Trigger: CCCAACGTCACCTCGGCCTCAAGCACAACCCAGCCC...GGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp GAGAAGGAACCATTCCTGACTGTACATGAGCCTGAGGTACGTGGGCCATGTGGGGGAGTGGCCGAAGGCTaGGGATGGGGAGTATGTGGA +
Preference number: 4 (lower is better)
Translates to: EKEPFLTVHEPEVRGPCGGVAEG*GWGVCG
Trigger: TCCACATACTCCCCATCCTCAGCCTTCGGCCACTCC...CCCACATGGCCCACGTACCTCAGGCTCATGTACAGTCAGGAATGGTTCCTTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
CDS-3UTR TCA 90 bp GCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGGCTGTAGTGCACTTTaGGCGAGGGCGGCCTGGGGA +
Preference number: 4 (lower is better)
Translates to: AGYLQDPATAHGIMEQPQGCSAL*ARAAWG
Trigger: TCCCCAGGCCGCCCTCGCTCAAAGTGCACTACAGCC...TTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp GAGAAGGAACCATTCCTGACTGTACATGAGCCTGAGGTACGTGGGCCATGTGGGAGGTGGTGTTGGTGCTaGACAGGACTGGGTGCAGGG +
Preference number: 4 (lower is better)
Translates to: EKEPFLTVHEPEVRGPCGRWCWC*TGLGAG
Trigger: CCCTGCACCCAGTCCTGTTCAGCACCAACACCACCT...CCCACATGGCCCACGTACCTCAGGCTCATGTACAGTCAGGAATGGTTCCTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
CDS-3UTR GCA 90 bp TACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTGGCCGTGAGCTCCCCTaGATCCCAGGGCTCCAGGTC +
Preference number: 4 (lower is better)
Translates to: YLQDPATAHGIMEQPQVPGRELP*IPGLQV
Trigger: GACCTGGAGCCCTGGGATGCAGGGGAGCTCACGGCC...AGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR GCA 90 bp ACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTACGATGGGTGGCCCTaGCGCGGAGGCTGGGTGCAT +
Preference number: 4 (lower is better)
Translates to: TSPYMPLLGPKHPPLQVSYDGWP*RGGWVH
Trigger: ATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTA...GCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp ACTGTACATGAGCCTGAGGTACGTGGGCCATGTGGGGTGGGGTGGTGTATGCCGGGGAGCCGGTGGAAATaGCAAAGTAGAAAGAAGGGC +
Preference number: 4 (lower is better)
Translates to: TVHEPEVRGPCGVGWCMPGSRWK*QSRKKG
Trigger: GCCCTTCTTTCTACTTTGCCATTTCCACCGGCTCCC...CGGCATACACCACCCCACCCCACATGGCCCACGTACCTCAGGCTCATGTACAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
CDS-3UTR CCA 90 bp GCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGCTGTCCGGTGGGAGTaGCCGAAGGCTGAGGATGGG +
Preference number: 4 (lower is better)
Translates to: AGYLQDPATAHGIMEQPQAVRWE*PKAEDG
Trigger: CCCATCCTCAGCCTTCGGCCACTCCCACCGGACAGC...TTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGGTGGGCCATGTGGGGTaGGGTGGTGTATGCCGGCTG +
Preference number: 4 (lower is better)
Translates to: HKSLHASTRSKTSSTASEVGHVG*GGVCRL
Trigger: CAGCCGGCATACACCACCCCACCCCACATGGCCCAC...CTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTGTGGGCCATGTGGGGTaGGGTGGTGTATGCCGGCTG +
Preference number: 4 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCVGHVG*GGVCRL
Trigger: CAGCCGGCATACACCACCCCACCCCACATGGCCCAC...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp ACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCGCTTCAGCGACATGGTaGGCGGCCCATACACCGGCT +
Preference number: 4 (lower is better)
Translates to: TSPYMPLLGPKHPPLQVSASATW*AAHTPA
Trigger: AGCCGGTGTATGGGCCGCTCACCATGTCGCTGAAGC...GCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR TCA 90 bp ACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAAGCTCCTCGCTGGCCGTaGGCTCCCCTGCATCCCAGG +
Preference number: 4 (lower is better)
Translates to: TWNYGTATSPYMPLLGPKAPRWP*APLHPR
Trigger: CCTGGGATGCAGGGGAGCTCACGGCCAGCGAGGAGC...TTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTCTGGCCCATCCGTGGTaGGCTCTGTCTCCCACTTCC +
Preference number: 4 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCLAHPW*ALSPTS
Trigger: GGAAGTGGGAGACAGAGCTCACCACGGATGGGCCAG...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTGTGAGAAGCAGCTCTTaGCGGCATGGAGCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCVRSSS*RHGAWP
Trigger: GGGCCAGGCTCCATGCCGTCAAGAGCTGCTTCTCAC...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCAACCCCACTGACCACTaGGGACCACGTTCCCCCTGC +
Preference number: 4 (lower is better)
Translates to: RTLQQHMELWNSHKSLHANPTDH*GPRSPC
Trigger: GCAGGGGGAACGTGGTCCTCAGTGGTCAGTGGGGTT...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGGCACCCCTTGGGATGTaGCCTCAGGCCCCCTCTTGT +
Preference number: 4 (lower is better)
Translates to: HKSLHASTRSKTSSTASEAPLGM*PQAPSC
Trigger: ACAAGAGGGGGCCTGAGGTCACATCCCAAGGGGTGC...CTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp TGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCACCCCTTGGGATGTaGCCTCAGGCCCCCTCTTGT +
Preference number: 4 (lower is better)
Translates to: WNSHKSLHASTRSKTSSTAPLGM*PQAPSC
Trigger: ACAAGAGGGGGCCTGAGGTCACATCCCAAGGGGTGC...AGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTGTGGACTGGCCAGATaGAGAGCCTGGGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCCGLAR*RAWAAW
Trigger: CCAGGCTGCCCAGGCTCTTCATCTGGCCAGTCCACA...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTGTGGACTGGCCAGATaGAGAGCCTGGGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: RTLQQHMELWNSHKSLHACGLAR*RAWAAW
Trigger: CCAGGCTGCCCAGGCTCTTCATCTGGCCAGTCCACA...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp GGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCTGTGGACTGGCCAGATaGAGAGCCTGGGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: GYLQDPATAHGIMEQPQVCGLAR*RAWAAW
Trigger: CCAGGCTGCCCAGGCTCTTCATCTGGCCAGTCCACA...GACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp TGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTTGTGGACTGGCCAGATaGAGAGCCTGGGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: WNSHKSLHASTRSKTSSTCGLAR*RAWAAW
Trigger: CCAGGCTGCCCAGGCTCTTCATCTGGCCAGTCCACA...AGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp TACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTGGCTGTAGTGCACTTTaGGCGAGGGCGGCCTGGGGA +
Preference number: 4 (lower is better)
Translates to: YLQDPATAHGIMEQPQVPGCSAL*ARAAWG
Trigger: TCCCCAGGCCGCCCTCGCTCAAAGTGCACTACAGCC...AGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCCGTGTAGGGGTGGCTaGCCGAGGTGGAAGAGAGTT +
Preference number: 4 (lower is better)
Translates to: GTATSPYMPLLGPKHPPLPCRGG*PRWKRV
Trigger: AACTCTCTTCCACCTCGGGCAGCCACCCCTACACGG...CAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR GCA 90 bp CACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGGGACCACGTTCCCCCTaGAGGACTGGTCCTTGCCAC +
Preference number: 4 (lower is better)
Translates to: HKSLHASTRSKTSSTASEGPRSP*RTGPCH
Trigger: GTGGCAAGGACCAGTCCTGCAGGGGGAACGTGGTCC...CTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGGACCACGTTCCCCCTaGAGGACTGGTCCTTGCCAC +
Preference number: 4 (lower is better)
Translates to: AGYLQDPATAHGIMEQPQGPRSP*RTGPCH
Trigger: GTGGCAAGGACCAGTCCTGCAGGGGGAACGTGGTCC...TTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTACGATGGGTGGCCCTaGCGCGGAGGCTGGGTGCAT +
Preference number: 4 (lower is better)
Translates to: QQHMELWNSHKSLHASTRYDGWP*RGGWVH
Trigger: ATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTA...CCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCATACGATGGGTGGCCCTaGCGCGGAGGCTGGGTGCAT +
Preference number: 4 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPYDGWP*RGGWVH
Trigger: ATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTA...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGGAAGTCTGCACCCCTTaGGATGTGACCTCAGGCCCC +
Preference number: 4 (lower is better)
Translates to: GTATSPYMPLLGPKHPPLEVCTP*DVTSGP
Trigger: GGGGCCTGAGGTCACATCCCAAGGGGTGCAGACTTC...CAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TCATTGGCGCATGGGCAGTTGGATGAGAAGGAACCATTCCTGACTGTACATGAGGCTGTCCGGTGGGAGTaGCCGAAGGCTGAGGATGGG +
Preference number: 4 (lower is better)
Translates to: SLAHGQLDEKEPFLTVHEAVRWE*PKAEDG
Trigger: CCCATCCTCAGCCTTCGGCCACTCCCACCGGACAGC...CTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
CDS-3UTR CCA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCAGCTGTCCGGTGGGAGTaGCCGAAGGCTGAGGATGGG +
Preference number: 4 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPAVRWE*PKAEDG
Trigger: CCCATCCTCAGCCTTCGGCCACTCCCACCGGACAGC...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACGCTGTCCGGTGGGAGTaGCCGAAGGCTGAGGATGGG +
Preference number: 4 (lower is better)
Translates to: PATAHGIMEQPQVPTCLYAVRWE*PKAEDG
Trigger: CCCATCCTCAGCCTTCGGCCACTCCCACCGGACAGC...GTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCGCATGGGCAGTTGGATGAGAAGGAACCATTCCTGACTGTACATGAGCCTGAGTTTGCTGCTGTCCGGTaGGAGTGGCCGAAGGCTGAG +
Preference number: 4 (lower is better)
Translates to: AHGQLDEKEPFLTVHEPEFAAVR*EWPKAE
Trigger: CTCAGCCTTCGGCCACTCCCACCGGACAGCAGCAAA...CTCAGGCTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
CDS-3UTR CCA 90 bp CAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCTTTGCTGCTGTCCGGTaGGAGTGGCCGAAGGCTGAG +
Preference number: 4 (lower is better)
Translates to: QSWVLAGPCNSTWNYGTAFAAVR*EWPKAE
Trigger: CTCAGCCTTCGGCCACTCCCACCGGACAGCAGCAAA...GGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACGTGGGCCATGTGGGGTaGGGTGGTGTATGCCGGCTG +
Preference number: 4 (lower is better)
Translates to: PATAHGIMEQPQVPTCLYVGHVG*GGVCRL
Trigger: CAGCCGGCATACACCACCCCACCCCACATGGCCCAC...GTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp AGCAAGCAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAGGTACGTGGGCCATGTaGGGTGGGGTGGTGTATGCC +
Preference number: 4 (lower is better)
Translates to: SKQSWVLAGPCNSTWNYGGTWAM*GGVVYA
Trigger: GGCATACACCACCCCACCCCACATGGCCCACGTACC...TCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTGCTTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCGGTACGTGGGCCATGTaGGGTGGGGTGGTGTATGCC +
Preference number: 4 (lower is better)
Translates to: GYLQDPATAHGIMEQPQVGTWAM*GGVVYA
Trigger: GGCATACACCACCCCACCCCACATGGCCCACGTACC...GACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp GCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGCTGGCCCATCCGTGGTaGGCTCTGTCTCCCACTTCC +
Preference number: 4 (lower is better)
Translates to: ATAHGIMEQPQVPTCLYSLAHPW*ALSPTS
Trigger: GGAAGTGGGAGACAGAGCTCACCACGGATGGGCCAG...CGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp ACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCGTGAGAAGCAGCTCTTaGCGGCATGGAGCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: TAHGIMEQPQVPTCLYSVVRSSS*RHGAWP
Trigger: GGGCCAGGCTCCATGCCGTCAAGAGCTGCTTCTCAC...GACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp TGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTAACCCCACTGACCACTaGGGACCACGTTCCCCCTGC +
Preference number: 4 (lower is better)
Translates to: WVLAGPCNSTWNYGTATSNPTDH*GPRSPC
Trigger: GCAGGGGGAACGTGGTCCTCAGTGGTCAGTGGGGTT...ACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTAAACCCCACTGACCACTaGGGACCACGTTCCCCCTGC +
Preference number: 4 (lower is better)
Translates to: PCNSTWNYGTATSPYMPLNPTDH*GPRSPC
Trigger: GCAGGGGGAACGTGGTCCTCAGTGGTCAGTGGGGTT...TAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCAGCACCCCTTGGGATGTaGCCTCAGGCCCCCTCTTGT +
Preference number: 4 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPAPLGM*PQAPSC
Trigger: ACAAGAGGGGGCCTGAGGTCACATCCCAAGGGGTGC...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGGGATGTGCATACTGCTaGGCGAGGGAGCCGGTGGAA +
Preference number: 4 (lower is better)
Translates to: LGTCRTLQQHMELWNSHKGCAYC*AREPVE
Trigger: TTCCACCGGCTCCCTCGCTCAGCAGTATGCACATCC...CTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTGGAGTGGCCGAAGGCTaGGGATGGGGAGTATGTGGA +
Preference number: 4 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCGVAEG*GWGVCG
Trigger: TCCACATACTCCCCATCCTCAGCCTTCGGCCACTCC...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp GTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCGGACTGGGTGCAGGGTaGCTTCCACCATGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: VLAGPCNSTWNYGTATSPGLGAG*LPPCWL
Trigger: AAGCCAGCATGGTGGAAGTCACCCTGCACCCAGTCC...GGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGGGACTGGGTGCAGGGTaGCTTCCACCATGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: LGTCRTLQQHMELWNSHKGLGAG*LPPCWL
Trigger: AAGCCAGCATGGTGGAAGTCACCCTGCACCCAGTCC...CTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTCCGTGTAGGGGTGGCTaGCCGAGGTGGAAGAGAGTT +
Preference number: 4 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCPCRGG*PRWKRV
Trigger: AACTCTCTTCCACCTCGGGCAGCCACCCCTACACGG...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR GCA 90 bp ACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTAGGACCACGTTCCCCCTaGAGGACTGGTCCTTGCCAC +
Preference number: 4 (lower is better)
Translates to: TCRTLQQHMELWNSHKSLGPRSP*RTGPCH
Trigger: GTGGCAAGGACCAGTCCTGCAGGGGGAACGTGGTCC...TAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp ACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCGGCAGGAGTCGGAGATaGGGCGGGAACAGGCATGGA +
Preference number: 4 (lower is better)
Translates to: TAHGIMEQPQVPTCLYSVGRSRR*GGNRHG
Trigger: TCCATGCCTGTTCCCGCCGCATCTCCGACTCCTGCC...GACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGCAGTGCTCTGTTGGATaGAGGGCTGGCAGGAGTCGG +
Preference number: 4 (lower is better)
Translates to: LGTCRTLQQHMELWNSHKQCSVG*RAGRSR
Trigger: CCGACTCCTGCCAGCCCTGCATCCAACAGAGCACTG...CTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCCAGTGCTCTGTTGGATaGAGGGCTGGCAGGAGTCGG +
Preference number: 4 (lower is better)
Translates to: VLAGPCNSTWNYGTATSPQCSVG*RAGRSR
Trigger: CCGACTCCTGCCAGCCCTGCATCCAACAGAGCACTG...GGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCCAGTGCTCTGTTGGATaGAGGGCTGGCAGGAGTCGG +
Preference number: 4 (lower is better)
Translates to: RTLQQHMELWNSHKSLHAQCSVG*RAGRSR
Trigger: CCGACTCCTGCCAGCCCTGCATCCAACAGAGCACTG...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGGCTGGGCTGGAAGTCTaGACCCCTTGGGATGTGACC +
Preference number: 4 (lower is better)
Translates to: LGTCRTLQQHMELWNSHKAGLEV*TPWDVT
Trigger: GGTCACATCCCAAGGGGTGCAGACTTCCAGCCCAGC...CTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCCAGCTCTTGACGGCATaGAGCCTGGCCCAGGCTGGC +
Preference number: 4 (lower is better)
Translates to: CNSTWNYGTATSPYMPLLQLLTA*SLAQAG
Trigger: GCCAGCCTGGGCCAGGCTCCATGCCGTCAAGAGCTG...GAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp CACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCGGCGGGAACAGGCATaGAAACGGCTTCTGCAGGGA +
Preference number: 4 (lower is better)
Translates to: HKSLHASTRSKTSSTASERREQA*KRLLQG
Trigger: TCCCTGCAGAAGCCGTTTCCATGCCTGTTCCCGCCG...CTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTTGTTGGATGCAGGGCTaGCAGGAGTCGGAGATGCGG +
Preference number: 4 (lower is better)
Translates to: WNSHKSLHASTRSKTSSTCWMQG*QESEMR
Trigger: CCGCATCTCCGACTCCTGCCAGCCCTGCATCCAACA...AGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGGAAGTCTGCACCCCTTaGGATGTGACCTCAGGCCCC +
Preference number: 4 (lower is better)
Translates to: LGTCRTLQQHMELWNSHKEVCTP*DVTSGP
Trigger: GGGGCCTGAGGTCACATCCCAAGGGGTGCAGACTTC...CTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGTTTGCAGGCTGGGCTaGAAGTCTGCACCCCTTGGG +
Preference number: 4 (lower is better)
Translates to: WNSHKSLHASTRSKTSSTVCRLG*KSAPLG
Trigger: CCCAAGGGGTGCAGACTTCCAGCCCAGCCTGCAAAC...AGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTTTGCTGCTGTCCGGTaGGAGTGGCCGAAGGCTGAG +
Preference number: 4 (lower is better)
Translates to: VLAGPCNSTWNYGTATSPFAAVR*EWPKAE
Trigger: CTCAGCCTTCGGCCACTCCCACCGGACAGCAGCAAA...GGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCGGTGCTGAACAGGACTaGGTGCAGGGTGACTTCCAC +
Preference number: 4 (lower is better)
Translates to: EQPQVPTCLYSVQNILHCGAEQD*VQGDFH
Trigger: GTGGAAGTCACCCTGCACCCAGTCCTGTTCAGCACC...GCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGGCCGACTGCTGCTGTaGACTGGCCAGATGAAGAGC +
Preference number: 4 (lower is better)
Translates to: AGYLQDPATAHGIMEQPQGRLLL*TGQMKS
Trigger: GCTCTTCATCTGGCCAGTCCACAGCAGCAGTCGGCC...TTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCCCATGTGGGGTGGGGTaGTGTATGCCGGCTGAACAT +
Preference number: 4 (lower is better)
Translates to: EQPQVPTCLYSVQNILHCPCGVG*CMPAEH
Trigger: ATGTTCAGCCGGCATACACCACCCCACCCCACATGG...GCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACAGGTACGTGGGCCATGTaGGGTGGGGTGGTGTATGCC +
Preference number: 4 (lower is better)
Translates to: LQDPATAHGIMEQPQVPTGTWAM*GGVVYA
Trigger: GGCATACACCACCCCACCCCACATGGCCCACGTACC...TGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCAAGAGAGTTGGGACCTaGCTGGTAGCGAGAAGGTGG +
Preference number: 4 (lower is better)
Translates to: QSWVLAGPCNSTWNYGTAKRVGT*LVARRW
Trigger: CCACCTTCTCGCTACCAGTCAGGTCCCAACTCTCTT...GGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp GGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGAAGAGAGTTGGGACCTaGCTGGTAGCGAGAAGGTGG +
Preference number: 4 (lower is better)
Translates to: GTATSPYMPLLGPKHPPLKRVGT*LVARRW
Trigger: CCACCTTCTCGCTACCAGTCAGGTCCCAACTCTCTT...CAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp GGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCTGCTTGAGGCCGAGGTaGCGTTGGGGTAGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: GTCRTLQQHMELWNSHKSCLRPR*RWGSRR
Trigger: CCTTCTACTACCCCAACGTCACCTCGGCCTCAAGCA...GGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTGCTTGAGGCCGAGGTaGCGTTGGGGTAGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCCLRPR*RWGSRR
Trigger: CCTTCTACTACCCCAACGTCACCTCGGCCTCAAGCA...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCGACACTAAACCAGGCTaGGCATGTGCTGGTGGTGCC +
Preference number: 4 (lower is better)
Translates to: RTLQQHMELWNSHKSLHADTKPG*ACAGGA
Trigger: GGCACCACCAGCACATGCTCAGCCTGGTTTAGTGTC...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTAGGATGTGCATACTGCTaGGCGAGGGAGCCGGTGGAA +
Preference number: 4 (lower is better)
Translates to: PCNSTWNYGTATSPYMPLGCAYC*AREPVE
Trigger: TTCCACCGGCTCCCTCGCTCAGCAGTATGCACATCC...TAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp ACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCGGATGTGCATACTGCTaGGCGAGGGAGCCGGTGGAA +
Preference number: 4 (lower is better)
Translates to: TAHGIMEQPQVPTCLYSVGCAYC*AREPVE
Trigger: TTCCACCGGCTCCCTCGCTCAGCAGTATGCACATCC...GACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp GCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGGAGTGGCCGAAGGCTaGGGATGGGGAGTATGTGGA +
Preference number: 4 (lower is better)
Translates to: ATAHGIMEQPQVPTCLYSGVAEG*GWGVCG
Trigger: TCCACATACTCCCCATCCTCAGCCTTCGGCCACTCC...CGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTAGGAGTGGCCGAAGGCTaGGGATGGGGAGTATGTGGA +
Preference number: 4 (lower is better)
Translates to: PCNSTWNYGTATSPYMPLGVAEG*GWGVCG
Trigger: TCCACATACTCCCCATCCTCAGCCTTCGGCCACTCC...TAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp TCATTGGCGCATGGGCAGTTGGATGAGAAGGAACCATTCCTGACTGTACATGAGGGACTGGGTGCAGGGTaGCTTCCACCATGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: SLAHGQLDEKEPFLTVHEGLGAG*LPPCWL
Trigger: AAGCCAGCATGGTGGAAGTCACCCTGCACCCAGTCC...CTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
CDS-3UTR TCA 90 bp CAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGGGACTGGGTGCAGGGTaGCTTCCACCATGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: QQHMELWNSHKSLHASTRGLGAG*LPPCWL
Trigger: AAGCCAGCATGGTGGAAGTCACCCTGCACCCAGTCC...CCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGGTGGTGGGCTTGTACTaGGGTACGTGGGCCATGTGG +
Preference number: 4 (lower is better)
Translates to: QQHMELWNSHKSLHASTRVVGLY*GTWAMW
Trigger: CCACATGGCCCACGTACCTCAGTACAAGCCCACCAC...CCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS-3UTR GCA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACCGAGGGTGGCGCTGTaGCTTTGGAGACATCCTTGG +
Preference number: 4 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPPRVAL*LWRHPW
Trigger: CCAAGGATGTCTCCAAAGGCACAGCGCCACCCTCGG...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR GCA 90 bp GGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGGAGAGTTTCCAATGCTaGTCTGCCTGGGAGACCTGG +
Preference number: 4 (lower is better)
Translates to: GTATSPYMPLLGPKHPPLESFQC*SAWETW
Trigger: CCAGGTCTCCCAGGCAGAGCAGCATTGGAAACTCTC...CAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGCAGGAGTCGGAGATaGGGCGGGAACAGGCATGGA +
Preference number: 4 (lower is better)
Translates to: CNSTWNYGTATSPYMPLLGRSRR*GGNRHG
Trigger: TCCATGCCTGTTCCCGCCGCATCTCCGACTCCTGCC...GAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTGCTGGGCTGGAAGTCTaGACCCCTTGGGATGTGACC +
Preference number: 4 (lower is better)
Translates to: WVLAGPCNSTWNYGTATSAGLEV*TPWDVT
Trigger: GGTCACATCCCAAGGGGTGCAGACTTCCAGCCCAGC...ACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTGGTAGCGAGAAGGTaGGCGAGAGGAAGGAGATGG +
Preference number: 4 (lower is better)
Translates to: GTCRTLQQHMELWNSHKSLVARR*ARGRRW
Trigger: CCATCTCCTTCCTCTCGCCCACCTTCTCGCTACCAG...GGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCCAATGCTGCTCTGCCTaGGAGACCTGGGTCTGTGAG +
Preference number: 4 (lower is better)
Translates to: RTLQQHMELWNSHKSLHAQCCSA*ETWVCE
Trigger: CTCACAGACCCAGGTCTCCCAGGCAGAGCAGCATTG...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAACAAGCACAGGCCCGCTaGGAGAGTTTCCAATGCTGC +
Preference number: 4 (lower is better)
Translates to: AGYLQDPATAHGIMEQPQQAQAR*ESFQCC
Trigger: GCAGCATTGGAAACTCTCCCAGCGGGCCTGTGCTTG...TTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTCAAGCACAGGCCCGCTaGGAGAGTTTCCAATGCTGC +
Preference number: 4 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCQAQAR*ESFQCC
Trigger: GCAGCATTGGAAACTCTCCCAGCGGGCCTGTGCTTG...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGGGGATGATGCCAGCTTaGGGAGAAGCAAGCACAGGC +
Preference number: 4 (lower is better)
Translates to: LGTCRTLQQHMELWNSHKGMMPA*GEASTG
Trigger: GCCTGTGCTTGCTTCTCCCCAAGCTGGCATCATCCC...CTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTGTTGGATGCAGGGCTaGCAGGAGTCGGAGATGCGG +
Preference number: 4 (lower is better)
Translates to: PATAHGIMEQPQVPTCLYCWMQG*QESEMR
Trigger: CCGCATCTCCGACTCCTGCCAGCCCTGCATCCAACA...GTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTTGTTGGATGCAGGGCTaGCAGGAGTCGGAGATGCGG +
Preference number: 4 (lower is better)
Translates to: WVLAGPCNSTWNYGTATSCWMQG*QESEMR
Trigger: CCGCATCTCCGACTCCTGCCAGCCCTGCATCCAACA...ACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACAGAAGTCTGCACCCCTTaGGATGTGACCTCAGGCCCC +
Preference number: 4 (lower is better)
Translates to: LQDPATAHGIMEQPQVPTEVCTP*DVTSGP
Trigger: GGGGCCTGAGGTCACATCCCAAGGGGTGCAGACTTC...TGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTTTGCAGGCTGGGCTaGAAGTCTGCACCCCTTGGG +
Preference number: 4 (lower is better)
Translates to: ATAHGIMEQPQVPTCLYSVCRLG*KSAPLG
Trigger: CCCAAGGGGTGCAGACTTCCAGCCCAGCCTGCAAAC...CGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTCTCTTGTTTGCAGGCTaGGCTGGAAGTCTGCACCCC +
Preference number: 4 (lower is better)
Translates to: WNSHKSLHASTRSKTSSTLLFAG*AGSLHP
Trigger: GGGGTGCAGACTTCCAGCCCAGCCTGCAAACAAGAG...AGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGAGGCTGAGCATGTGCTaGTGGTGCCATCATCCTGGC +
Preference number: 4 (lower is better)
Translates to: LGTCRTLQQHMELWNSHKRLSMC*WCHHPG
Trigger: GCCAGGATGATGGCACCACCAGCACATGCTCAGCCT...CTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCAGGCTGAGCATGTGCTaGTGGTGCCATCATCCTGGC +
Preference number: 4 (lower is better)
Translates to: RTLQQHMELWNSHKSLHARLSMC*WCHHPG
Trigger: GCCAGGATGATGGCACCACCAGCACATGCTCAGCCT...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GAGAAGGAACCATTCCTGACTGTACATGAGCCTGAGGTACGTGGGCCATGTGGGGAGCGAGGGAGCCGGTaGAAATGGCAAAGTAGAAAG +
Preference number: 4 (lower is better)
Translates to: EKEPFLTVHEPEVRGPCGERGSR*KWQSRK
Trigger: CTTTCTACTTTGCCATTTCCACCGGCTCCCTCGCTC...CCCACATGGCCCACGTACCTCAGGCTCATGTACAGTCAGGAATGGTTCCTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
CDS-3UTR CCA 90 bp TGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATTTTGCTGCTGTCCGGTaGGAGTGGCCGAAGGCTGAG +
Preference number: 4 (lower is better)
Translates to: CRTLQQHMELWNSHKSLHFAAVR*EWPKAE
Trigger: CTCAGCCTTCGGCCACTCCCACCGGACAGCAGCAAA...ATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATTTGCTGCTGTCCGGTaGGAGTGGCCGAAGGCTGAG +
Preference number: 4 (lower is better)
Translates to: ASTRSKTSSTASELLAFLFAAVR*EWPKAE
Trigger: CTCAGCCTTCGGCCACTCCCACCGGACAGCAGCAAA...TAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTACTGCTGCTGTGGACTaGCCAGATGAAGAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: WNSHKSLHASTRSKTSSTTAAVD*PDEEPG
Trigger: CCCAGGCTCTTCATCTGGCCAGTCCACAGCAGCAGT...AGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCAGGCCGACTGCTGCTGTaGACTGGCCAGATGAAGAGC +
Preference number: 4 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPGRLLL*TGQMKS
Trigger: GCTCTTCATCTGGCCAGTCCACAGCAGCAGTCGGCC...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCAGGCCGACTGCTGCTGTaGACTGGCCAGATGAAGAGC +
Preference number: 4 (lower is better)
Translates to: LHASTRSKTSSTASELLAGRLLL*TGQMKS
Trigger: GCTCTTCATCTGGCCAGTCCACAGCAGCAGTCGGCC...TGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGGCCGACTGCTGCTGTaGACTGGCCAGATGAAGAGC +
Preference number: 4 (lower is better)
Translates to: ATAHGIMEQPQVPTCLYSGRLLL*TGQMKS
Trigger: GCTCTTCATCTGGCCAGTCCACAGCAGCAGTCGGCC...CGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTGCCCCGCATGATAAATaGCCGACTGCTGCTGTGGAC +
Preference number: 4 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCAPHDK*PTAAVD
Trigger: GTCCACAGCAGCAGTCGGCCATTTATCATGCGGGGC...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCCCCGCATGATAAATaGCCGACTGCTGCTGTGGAC +
Preference number: 4 (lower is better)
Translates to: WNSHKSLHASTRSKTSSTAPHDK*PTAAVD
Trigger: GTCCACAGCAGCAGTCGGCCATTTATCATGCGGGGC...AGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCAAGCAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACCATGTGGGGTGGGGTaGTGTATGCCGGCTGAACAT +
Preference number: 4 (lower is better)
Translates to: ASRAGYLQDPATAHGIMEPCGVG*CMPAEH
Trigger: ATGTTCAGCCGGCATACACCACCCCACCCCACATGG...TTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTGCTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp ACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTGGGCCATGTGGGGTaGGGTGGTGTATGCCGGCTG +
Preference number: 4 (lower is better)
Translates to: TRSKTSSTASELLAFLSDVGHVG*GGVCRL
Trigger: CAGCCGGCATACACCACCCCACCCCACATGGCCCAC...ATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp ACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCTGCTTGAGGCCGAGGTaGCGTTGGGGTAGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: TAHGIMEQPQVPTCLYSVCLRPR*RWGSRR
Trigger: CCTTCTACTACCCCAACGTCACCTCGGCCTCAAGCA...GACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCAGACACTAAACCAGGCTaGGCATGTGCTGGTGGTGCC +
Preference number: 4 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPDTKPG*ACAGGA
Trigger: GGCACCACCAGCACATGCTCAGCCTGGTTTAGTGTC...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACGGACTGGGTGCAGGGTaGCTTCCACCATGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: HGIMEQPQVPTCLYSVQNGLGAG*LPPCWL
Trigger: AAGCCAGCATGGTGGAAGTCACCCTGCACCCAGTCC...GTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCGAGAAGGGTGGATGGTaGAGACTGTCTGTTGTGCTG +
Preference number: 4 (lower is better)
Translates to: QSWVLAGPCNSTWNYGTAEKGGW*RLSVVL
Trigger: CAGCACAACAGACAGTCTTCACCATCCACCCTTCTC...GGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp GAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCGTGGTGGGCTTGTACTaGAGGGTGCGTCATATAAGG +
Preference number: 4 (lower is better)
Translates to: EQPQVPTCLYSVQNILHCVVGLY*RVRHIR
Trigger: CCTTATATGACGCACCCTTCAGTACAAGCCCACCAC...GCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCACGCGCCGTGGCCGTTaGTACCAAAACAGTCTGAGG +
Preference number: 4 (lower is better)
Translates to: HASTRSKTSSTASELLAFTRRGR*YQNSLR
Trigger: CCTCAGACTGTTTTGGTAGCAACGGCCACGGCGCGT...GAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR GCA 90 bp AGCAAGCAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAGCTGAGGCAGTCCTTTaGTACTGTTCCGACCTCTGC +
Preference number: 4 (lower is better)
Translates to: SKQSWVLAGPCNSTWNYGAEAVL*YCSDLC
Trigger: GCAGAGGTCGGAACAGTAGCAAAGGACTGCCTCAGC...TCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTGCTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR GCA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTGCCACTGGTACAGTTaGTGCTGCTGCTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCCHWYS*CCCCCC
Trigger: ACAGCAGCAGCAGCAGCAGCAACTGTACCAGTGGCA...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GCGCATGGGCAGTTGGATGAGAAGGAACCATTCCTGACTGTACATGAGCCTGAGTGGGGAGTATGTGGATaGAGGGCGGCATTAGGATGT +
Preference number: 4 (lower is better)
Translates to: AHGQLDEKEPFLTVHEPEWGVCG*RAALGC
Trigger: ACATCCTAATGCCGCCCTGCATCCACATACTCCCCA...CTCAGGCTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
CDS-3UTR GCA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCCTGAACAGGACTGGGTaGAGGGTGACTTCCACCATG +
Preference number: 4 (lower is better)
Translates to: RTLQQHMELWNSHKSLHALNRTG*RVTSTM
Trigger: CATGGTGGAAGTCACCCTGCACCCAGTCCTGTTCAG...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGAGATGGGCAAGGCGATaGCCAGGGAACACCTCCATT +
Preference number: 4 (lower is better)
Translates to: HKSLHASTRSKTSSTASERWARR*PGNTSI
Trigger: AATGGAGGTGTTCCCTGGCCATCGCCTTGCCCATCT...CTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp AGCAAGCAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAAGATGGGCAAGGCGATaGCCAGGGAACACCTCCATT +
Preference number: 4 (lower is better)
Translates to: SKQSWVLAGPCNSTWNYGRWARR*PGNTSI
Trigger: AATGGAGGTGTTCCCTGGCCATCGCCTTGCCCATCT...TCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTGCTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp GCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTACTGGTAGCGAGAAGGTaGGCGAGAGGAAGGAGATGG +
Preference number: 4 (lower is better)
Translates to: ASTRSKTSSTASELLAFLLVARR*ARGRRW
Trigger: CCATCTCCTTCCTCTCGCCCACCTTCTCGCTACCAG...TAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp ACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCGAGGTGGAAGAGAGTTaGGACCTGACTGGTAGCGAG +
Preference number: 4 (lower is better)
Translates to: TSPYMPLLGPKHPPLQVSEVEES*DLTGSE
Trigger: CTCGCTACCAGTCAGGTCCCAACTCTCTTCCACCTC...GCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp CAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCTCTGCCTGGGAGACCTaGGTCTGTGAGTTTTGGGAG +
Preference number: 4 (lower is better)
Translates to: QHMELWNSHKSLHASTRSSAWET*VCEFWE
Trigger: CTCCCAAAACTCACAGACCCAGGTCTCCCAGGCAGA...GGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp ACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTCTGCCTGGGAGACCTaGGTCTGTGAGTTTTGGGAG +
Preference number: 4 (lower is better)
Translates to: TSPYMPLLGPKHPPLQVSSAWET*VCEFWE
Trigger: CTCCCAAAACTCACAGACCCAGGTCTCCCAGGCAGA...GCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACAATGCTGCTCTGCCTaGGAGACCTGGGTCTGTGAG +
Preference number: 4 (lower is better)
Translates to: PCNSTWNYGTATSPYMPLQCCSA*ETWVCE
Trigger: CTCACAGACCCAGGTCTCCCAGGCAGAGCAGCATTG...TAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTGGGATGATGCCAGCTTaGGGAGAAGCAAGCACAGGC +
Preference number: 4 (lower is better)
Translates to: WVLAGPCNSTWNYGTATSGMMPA*GEASTG
Trigger: GCCTGTGCTTGCTTCTCCCCAAGCTGGCATCATCCC...ACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACCGGCGGGAACAGGCATaGAAACGGCTTCTGCAGGGA +
Preference number: 4 (lower is better)
Translates to: HGIMEQPQVPTCLYSVQNRREQA*KRLLQG
Trigger: TCCCTGCAGAAGCCGTTTCCATGCCTGTTCCCGCCG...GTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTACTCTTGTTTGCAGGCTaGGCTGGAAGTCTGCACCCC +
Preference number: 4 (lower is better)
Translates to: ASTRSKTSSTASELLAFLLLFAG*AGSLHP
Trigger: GGGGTGCAGACTTCCAGCCCAGCCTGCAAACAAGAG...TAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCATGACCCACCATAGATaGGCTGGGTTGTGCTTGAGG +
Preference number: 4 (lower is better)
Translates to: QSWVLAGPCNSTWNYGTAMTHHR*AGLCLR
Trigger: CCTCAAGCACAACCCAGCCCATCTATGGTGGGTCAT...GGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGTACGCCCGGGCTCACTaGGACGGGATACATCATATT +
Preference number: 4 (lower is better)
Translates to: GTATSPYMPLLGPKHPPLYARAH*DGIHHI
Trigger: AATATGATGTATCCCGTCCCAGTGAGCCCGGGCGTA...CAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCGGACCAAAGGCTGATTaGGAAACTGCTGAGGGCTGT +
Preference number: 4 (lower is better)
Translates to: EQPQVPTCLYSVQNILHCGPKAD*ETAEGC
Trigger: ACAGCCCTCAGCAGTTTCCCAATCAGCCTTTGGTCC...GCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCAAGGCTGAGCATGTGCTaGTGGTGCCATCATCCTGGC +
Preference number: 4 (lower is better)
Translates to: LHASTRSKTSSTASELLARLSMC*WCHHPG
Trigger: GCCAGGATGATGGCACCACCAGCACATGCTCAGCCT...TGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCGGTGCTGAACAGGACTaGGTGCAGGGTGACTTCCAC +
Preference number: 4 (lower is better)
Translates to: HASTRSKTSSTASELLAFGAEQD*VQGDFH
Trigger: GTGGAAGTCACCCTGCACCCAGTCCTGTTCAGCACC...GAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACACTGCTGCTGTGGACTaGCCAGATGAAGAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: PATAHGIMEQPQVPTCLYTAAVD*PDEEPG
Trigger: CCCAGGCTCTTCATCTGGCCAGTCCACAGCAGCAGT...GTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAACTGCTGCTGTGGACTaGCCAGATGAAGAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: SLHASTRSKTSSTASELLTAAVD*PDEEPG
Trigger: CCCAGGCTCTTCATCTGGCCAGTCCACAGCAGCAGT...TAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCAGCCCCGCATGATAAATaGCCGACTGCTGCTGTGGAC +
Preference number: 4 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPAPHDK*PTAAVD
Trigger: GTCCACAGCAGCAGTCGGCCATTTATCATGCGGGGC...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACCATGTGGGGTGGGGTaGTGTATGCCGGCTGAACAT +
Preference number: 4 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPPCGVG*CMPAEH
Trigger: ATGTTCAGCCGGCATACACCACCCCACCCCACATGG...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp ACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAAGGTACGTGGGCCATGTaGGGTGGGGTGGTGTATGCC +
Preference number: 4 (lower is better)
Translates to: TWNYGTATSPYMPLLGPKGTWAM*GGVVYA
Trigger: GGCATACACCACCCCACCCCACATGGCCCACGTACC...TTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp TGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTCCTTGGGGGTCCTTCTaGAGACATGCGTTTAGGCAT +
Preference number: 4 (lower is better)
Translates to: WNSHKSLHASTRSKTSSTPWGSF*RHAFRH
Trigger: ATGCCTAAACGCATGTCTTCAGAAGGACCCCCAAGG...AGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp CAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCGGAGACCTGGGTCTGTaGGTTTTGGGAGATAACCTT +
Preference number: 4 (lower is better)
Translates to: QSWVLAGPCNSTWNYGTAGDLGL*VLGDNL
Trigger: AAGGTTATCTCCCAAAACTCACAGACCCAGGTCTCC...GGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGGAGAAGGGTGGATGGTaGAGACTGTCTGTTGTGCTG +
Preference number: 4 (lower is better)
Translates to: HKSLHASTRSKTSSTASEEKGGW*RLSVVL
Trigger: CAGCACAACAGACAGTCTTCACCATCCACCCTTCTC...CTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp GCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGCATGGGCAGTTGGATaGGAAGGAACCATTCCTGAC +
Preference number: 4 (lower is better)
Translates to: AGYLQDPATAHGIMEQPQAWAVG*EGTIPD
Trigger: GTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGC...TTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp AATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTGTGGTGGGCTTGTACTaGGGTACGTGGGCCATGTGG +
Preference number: 4 (lower is better)
Translates to: NYGTATSPYMPLLGPKHPVVGLY*GTWAMW
Trigger: CCACATGGCCCACGTACCTCAGTACAAGCCCACCAC...AGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS-3UTR GCA 90 bp CAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCCTCACCATTCACCTTTaGGCTGAGAGCAGAGTCAGT +
Preference number: 4 (lower is better)
Translates to: QSWVLAGPCNSTWNYGTALTIHL*AESRVS
Trigger: ACTGACTCTGCTCTCAGCGCAAAGGTGAATGGTGAG...GGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR GCA 90 bp CTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTGTTGGTCTTGCTGCTaGCACTGGTACAGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: LGTCRTLQQHMELWNSHKCWSCC*HWYSCC
Trigger: GCAGCAACTGTACCAGTGGCAGCAGCAAGACCAACA...CTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTAGGCTGTTGGTCTTGCTaGTGCCACTGGTACAGTTGC +
Preference number: 4 (lower is better)
Translates to: ASTRSKTSSTASELLAFLGCWSC*CHWYSC
Trigger: GCAACTGTACCAGTGGCAGCAGCAAGACCAACAGCC...TAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCCCCCTCTTGTGCTCTaGATTACTAAGCATGGAAGG +
Preference number: 4 (lower is better)
Translates to: GTATSPYMPLLGPKHPPLPPLVL*ITKHGR
Trigger: CCTTCCATGCTTAGTAATGCAGAGCACAAGAGGGGG...CAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTGCTGGGCTGGAAGTCTaGACCCCTTGGGATGTGACC +
Preference number: 4 (lower is better)
Translates to: RSKTSSTASELLAFLSDVAGLEV*TPWDVT
Trigger: GGTCACATCCCAAGGGGTGCAGACTTCCAGCCCAGC...AACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCATCCTTCTCTTGTTTaGAGGCTGGGCTGGAAGTCT +
Preference number: 4 (lower is better)
Translates to: GTATSPYMPLLGPKHPPLHPSLV*RLGWKS
Trigger: AGACTTCCAGCCCAGCCTGCAAACAAGAGAAGGATG...CAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGACCAGGCTGAGCATGTaGTGGTGGTGCCATCATCCT +
Preference number: 4 (lower is better)
Translates to: QQHMELWNSHKSLHASTRTRLSM*WWCHHP
Trigger: AGGATGATGGCACCACCAGCACATGCTCAGCCTGGT...CCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp AGCAAGCAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGATGGGGAGTATGTGGATaGAGGGCGGCATTAGGATGT +
Preference number: 4 (lower is better)
Translates to: SKQSWVLAGPCNSTWNYGWGVCG*RAALGC
Trigger: ACATCCTAATGCCGCCCTGCATCCACATACTCCCCA...TCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTGCTTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGAACAGGACTGGGTaGAGGGTGACTTCCACCATG +
Preference number: 4 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPLNRTG*RVTSTM
Trigger: CATGGTGGAAGTCACCCTGCACCCAGTCCTGTTCAG...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTACTGAACAGGACTGGGTaGAGGGTGACTTCCACCATG +
Preference number: 4 (lower is better)
Translates to: ASTRSKTSSTASELLAFLLNRTG*RVTSTM
Trigger: CATGGTGGAAGTCACCCTGCACCCAGTCCTGTTCAG...TAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACCTGAACAGGACTGGGTaGAGGGTGACTTCCACCATG +
Preference number: 4 (lower is better)
Translates to: PATAHGIMEQPQVPTCLYLNRTG*RVTSTM
Trigger: CATGGTGGAAGTCACCCTGCACCCAGTCCTGTTCAG...GTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCGACTGTCTGTTGTGCTaGTGGGAAACTGCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: GTCRTLQQHMELWNSHKSDCLLC*WETALW
Trigger: CCACAGAGCAGTTTCCCAGCAGCACAACAGACAGTC...GGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGACTGTCTGTTGTGCTaGTGGGAAACTGCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: WNSHKSLHASTRSKTSSTDCLLC*WETALW
Trigger: CCACAGAGCAGTTTCCCAGCAGCACAACAGACAGTC...AGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACAGGGCAGCCTTACAACTaGTGTTGGTGGTGGGCTTGT +
Preference number: 4 (lower is better)
Translates to: LQDPATAHGIMEQPQVPTGQPYN*CWWWAC
Trigger: ACAAGCCCACCACCAACAGCAGTTGTAAGGCTGCCC...TGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp ACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCAGTAGAGACAGGAGCTaGAGAACCATGAGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: TSPYMPLLGPKHPPLQVSSRDRS*RTMSRG
Trigger: CCCTCTGCTCATGGTTCTCCAGCTCCTGTCTCTACT...GCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp TGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATGTGGCGCTGTGCCTTTaGAGACATCCTTGGGGGTCC +
Preference number: 4 (lower is better)
Translates to: WNYGTATSPYMPLLGPKHVALCL*RHPWGS
Trigger: GGACCCCCAAGGATGTCTCCAAAGGCACAGCGCCAC...ATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp CGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTGTGGCGCTGTGCCTTTaGAGACATCCTTGGGGGTCC +
Preference number: 4 (lower is better)
Translates to: RSKTSSTASELLAFLSDVVALCL*RHPWGS
Trigger: GGACCCCCAAGGATGTCTCCAAAGGCACAGCGCCAC...AACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp TACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACTGGTCCTTGCCACTaGAGGAGCAGCTGCTTCACT +
Preference number: 4 (lower is better)
Translates to: YLQDPATAHGIMEQPQVPTGPCH*RSSCFT
Trigger: AGTGAAGCAGCTGCTCCTCCAGTGGCAAGGACCAGT...AGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTAACTGGTCCTTGCCACTaGAGGAGCAGCTGCTTCACT +
Preference number: 4 (lower is better)
Translates to: ASTRSKTSSTASELLAFLTGPCH*RSSCFT
Trigger: AGTGAAGCAGCTGCTCCTCCAGTGGCAAGGACCAGT...TAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTATCTGCCTGGGAGACCTaGGTCTGTGAGTTTTGGGAG +
Preference number: 4 (lower is better)
Translates to: SLHASTRSKTSSTASELLSAWET*VCEFWE
Trigger: CTCCCAAAACTCACAGACCCAGGTCTCCCAGGCAGA...TAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp AATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCGGCGGGAACAGGCATaGAAACGGCTTCTGCAGGGA +
Preference number: 4 (lower is better)
Translates to: NYGTATSPYMPLLGPKHPRREQA*KRLLQG
Trigger: TCCCTGCAGAAGCCGTTTCCATGCCTGTTCCCGCCG...AGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp AATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTGTTTGCAGGCTGGGCTaGAAGTCTGCACCCCTTGGG +
Preference number: 4 (lower is better)
Translates to: NYGTATSPYMPLLGPKHPVCRLG*KSAPLG
Trigger: CCCAAGGGGTGCAGACTTCCAGCCCAGCCTGCAAAC...AGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTGGACCAAAGGCTGATTaGGAAACTGCTGAGGGCTGT +
Preference number: 4 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCGPKAD*ETAEGC
Trigger: ACAGCCCTCAGCAGTTTCCCAATCAGCCTTTGGTCC...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp AACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTAGGCTGAGCATGTGCTaGTGGTGCCATCATCCTGGC +
Preference number: 4 (lower is better)
Translates to: NSTWNYGTATSPYMPLLGRLSMC*WCHHPG
Trigger: GCCAGGATGATGGCACCACCAGCACATGCTCAGCCT...ACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTGGGACATGCATACATaGCGTGCGTCTGCTCGTGAG +
Preference number: 4 (lower is better)
Translates to: QQHMELWNSHKSLHASTRWDMHT*RASARE
Trigger: CTCACGAGCAGACGCACGCCATGTATGCATGTCCCA...CCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCGGGAGCCGGTGGAAATaGCAAAGTAGAAAGAAGGGC +
Preference number: 4 (lower is better)
Translates to: RTLQQHMELWNSHKSLHAGSRWK*QSRKKG
Trigger: GCCCTTCTTTCTACTTTGCCATTTCCACCGGCTCCC...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp TGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCACTGCTGCTGTGGACTaGCCAGATGAAGAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: CNSTWNYGTATSPYMPLLTAAVD*PDEEPG
Trigger: CCCAGGCTCTTCATCTGGCCAGTCCACAGCAGCAGT...GAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACCCATGTGGGGTGGGGTaGTGTATGCCGGCTGAACAT +
Preference number: 4 (lower is better)
Translates to: HGIMEQPQVPTCLYSVQNPCGVG*CMPAEH
Trigger: ATGTTCAGCCGGCATACACCACCCCACCCCACATGG...GTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCTGGCGCATGGGCAGTTaGATGAGAAGGAACCATTCC +
Preference number: 4 (lower is better)
Translates to: GYLQDPATAHGIMEQPQVWRMGS*MRRNHS
Trigger: GGAATGGTTCCTTCTCATCCAACTGCCCATGCGCCA...GACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGAACTGCTGTTGGTGGTaGGCTTGTACTGAAGGGTGC +
Preference number: 4 (lower is better)
Translates to: LGTCRTLQQHMELWNSHKNCCWW*ACTEGC
Trigger: GCACCCTTCAGTACAAGCCCACCACCAACAGCAGTT...CTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACACGGTGGAAACATACATaGCGTGCGTCTGCTCGTGAG +
Preference number: 4 (lower is better)
Translates to: LQDPATAHGIMEQPQVPTRWKHT*RASARE
Trigger: CTCACGAGCAGACGCACGCCATGTATGTTTCCACCG...TGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp AAAATCAATGAAGTTCTAGTTTTCTGTGCTTCCGGTTGGCAGAAGCAGGAGAAGGCTACCAAAACAGTCTaGGGCGCAGGGTGGCGAGCG +
Preference number: 4 (lower is better)
Translates to: KINEVLVFCASGWQKQEKATKTV*GAGWRA
Trigger: CGCTCGCCACCCTGCGCCTCAGACTGTTTTGGTAGC...CTTCTCCTGCTTCTGCCAACCGGAAGCACAGAAAACTAGAACTTCATTGATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR TCA 90 bp GTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCAGCCAGCGTTCGGGTTaGAATCTGAAGTGTGAGAAG +
Preference number: 4 (lower is better)
Translates to: VLAGPCNSTWNYGTATSPSQRSG*NLKCEK
Trigger: CTTCTCACACTTCAGATTTCAACCCGAACGCTGGCT...GGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp ACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACCTTGGGGGTCCTTCTaGAGACATGCGTTTAGGCAT +
Preference number: 4 (lower is better)
Translates to: TCRTLQQHMELWNSHKSLPWGSF*RHAFRH
Trigger: ATGCCTAAACGCATGTCTTCAGAAGGACCCCCAAGG...TAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp ACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAAGACACTAAACCAGGCTaGGCATGTGCTGGTGGTGCC +
Preference number: 4 (lower is better)
Translates to: TWNYGTATSPYMPLLGPKDTKPG*ACAGGA
Trigger: GGCACCACCAGCACATGCTCAGCCTGGTTTAGTGTC...TTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCGAGAAGGGTGGATGGTaGAGACTGTCTGTTGTGCTG +
Preference number: 4 (lower is better)
Translates to: HASTRSKTSSTASELLAFEKGGW*RLSVVL
Trigger: CAGCACAACAGACAGTCTTCACCATCCACCCTTCTC...GAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTCTCACCATTCACCTTTaGGCTGAGAGCAGAGTCAGT +
Preference number: 4 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCLTIHL*AESRVS
Trigger: ACTGACTCTGCTCTCAGCGCAAAGGTGAATGGTGAG...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR GCA 90 bp CATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACGAGAGTTTCCAATGCTaGTCTGCCTGGGAGACCTGG +
Preference number: 4 (lower is better)
Translates to: HGIMEQPQVPTCLYSVQNESFQC*SAWETW
Trigger: CCAGGTCTCCCAGGCAGAGCAGCATTGGAAACTCTC...GTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp AACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTTGCCACTGGTACAGTTaGTGCTGCTGCTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: NSTWNYGTATSPYMPLLGCHWYS*CCCCCC
Trigger: ACAGCAGCAGCAGCAGCAGCAACTGTACCAGTGGCA...ACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCTGCCACTGGTACAGTTaGTGCTGCTGCTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: CNSTWNYGTATSPYMPLLCHWYS*CCCCCC
Trigger: ACAGCAGCAGCAGCAGCAGCAACTGTACCAGTGGCA...GAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTATGTTGGTCTTGCTGCTaGCACTGGTACAGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: SLHASTRSKTSSTASELLCWSCC*HWYSCC
Trigger: GCAGCAACTGTACCAGTGGCAGCAGCAAGACCAACA...TAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGTGTTGGTCTTGCTGCTaGCACTGGTACAGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: ATAHGIMEQPQVPTCLYSCWSCC*HWYSCC
Trigger: GCAGCAACTGTACCAGTGGCAGCAGCAAGACCAACA...CGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp AACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTGGCTGTTGGTCTTGCTaGTGCCACTGGTACAGTTGC +
Preference number: 4 (lower is better)
Translates to: NSTWNYGTATSPYMPLLGGCWSC*CHWYSC
Trigger: GCAACTGTACCAGTGGCAGCAGCAAGACCAACAGCC...ACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACGGCTGTTGGTCTTGCTaGTGCCACTGGTACAGTTGC +
Preference number: 4 (lower is better)
Translates to: HGIMEQPQVPTCLYSVQNGCWSC*CHWYSC
Trigger: GCAACTGTACCAGTGGCAGCAGCAAGACCAACAGCC...GTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCCCCCCTCTTGTGCTCTaGATTACTAAGCATGGAAGG +
Preference number: 4 (lower is better)
Translates to: VLAGPCNSTWNYGTATSPPPLVL*ITKHGR
Trigger: CCTTCCATGCTTAGTAATGCAGAGCACAAGAGGGGG...GGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTAC
51% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp AACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTACCAGGCTGAGCATGTaGTGGTGGTGCCATCATCCT +
Preference number: 4 (lower is better)
Translates to: NSTWNYGTATSPYMPLLGTRLSM*WWCHHP
Trigger: AGGATGATGGCACCACCAGCACATGCTCAGCCTGGT...ACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACACCAGGCTGAGCATGTaGTGGTGGTGCCATCATCCT +
Preference number: 4 (lower is better)
Translates to: HGIMEQPQVPTCLYSVQNTRLSM*WWCHHP
Trigger: AGGATGATGGCACCACCAGCACATGCTCAGCCTGGT...GTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTATGGGGAGTATGTGGATaGAGGGCGGCATTAGGATGT +
Preference number: 4 (lower is better)
Translates to: PCNSTWNYGTATSPYMPLWGVCG*RAALGC
Trigger: ACATCCTAATGCCGCCCTGCATCCACATACTCCCCA...TAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTTGGGGAGTATGTGGATaGAGGGCGGCATTAGGATGT +
Preference number: 4 (lower is better)
Translates to: YLQDPATAHGIMEQPQVPWGVCG*RAALGC
Trigger: ACATCCTAATGCCGCCCTGCATCCACATACTCCCCA...AGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GCAAGCAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAAGTGCTGCTGGGAAACTaGTCTGTGGAGACTGTGTAT +
Preference number: 4 (lower is better)
Translates to: ASRAGYLQDPATAHGIMEVLLGN*SVETVY
Trigger: ATACACAGTCTCCACAGAGCAGTTTCCCAGCAGCAC...TTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTGCTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCAGACTGTCTGTTGTGCTaGTGGGAAACTGCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPDCLLC*WETALW
Trigger: CCACAGAGCAGTTTCCCAGCAGCACAACAGACAGTC...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAATCAGTGTATGGCCGGGACGCGCCGTaGCCGTTGCTACCAAAACAG +
Preference number: 4 (lower is better)
Translates to: SSTASELLAFLSDVKSVYGRDAP*PLLPKQ
Trigger: CTGTTTTGGTAGCAACGGCCACGGCGCGTCCCGGCC...ATACACTGATTTAACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR CCA 90 bp TCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAATCAGTGTATCAGCTCTTGACGGCATaGAGCCTGGCCCAGGCTGGC +
Preference number: 4 (lower is better)
Translates to: SSTASELLAFLSDVKSVYQLLTA*SLAQAG
Trigger: GCCAGCCTGGGCCAGGCTCCATGCCGTCAAGAGCTG...ATACACTGATTTAACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp AACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTGAGGTGGAAGAGAGTTaGGACCTGACTGGTAGCGAG +
Preference number: 4 (lower is better)
Translates to: NSTWNYGTATSPYMPLLGEVEES*DLTGSE
Trigger: CTCGCTACCAGTCAGGTCCCAACTCTCTTCCACCTC...ACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp TACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTAGTAGAGACAGGAGCTaGAGAACCATGAGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: YLQDPATAHGIMEQPQVPSRDRS*RTMSRG
Trigger: CCCTCTGCTCATGGTTCTCCAGCTCCTGTCTCTACT...AGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp GAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAGCAGCTGCTTCACTTaGGGGATTGTGGGATACAAA +
Preference number: 4 (lower is better)
Translates to: EQPQVPTCLYSVQNILHCSSCFT*GIVGYK
Trigger: TTTGTATCCCACAATCCCCCAAGTGAAGCAGCTGCT...GCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCTGGGTCTGTGAGTTTTaGGAGATAACCTTGGAACCC +
Preference number: 4 (lower is better)
Translates to: EQPQVPTCLYSVQNILHCWVCEF*EITLEP
Trigger: GGGTTCCAAGGTTATCTCCCAAAACTCACAGACCCA...GCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTCAAGCACAGGCCCGCTaGGAGAGTTTCCAATGCTGC +
Preference number: 4 (lower is better)
Translates to: RSKTSSTASELLAFLSDVQAQAR*ESFQCC
Trigger: GCAGCATTGGAAACTCTCCCAGCGGGCCTGTGCTTG...AACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCAATGACCCACCATAGATaGGCTGGGTTGTGCTTGAGG +
Preference number: 4 (lower is better)
Translates to: LHASTRSKTSSTASELLAMTHHR*AGLCLR
Trigger: CCTCAAGCACAACCCAGCCCATCTATGGTGGGTCAT...TGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTAATGACCCACCATAGATaGGCTGGGTTGTGCTTGAGG +
Preference number: 4 (lower is better)
Translates to: PCNSTWNYGTATSPYMPLMTHHR*AGLCLR
Trigger: CCTCAAGCACAACCCAGCCCATCTATGGTGGGTCAT...TAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCAAGTGTACACTGGAGCTaGCTGCTGATGACCCACCAT +
Preference number: 4 (lower is better)
Translates to: LHASTRSKTSSTASELLASVHWS*LLMTHH
Trigger: ATGGTGGGTCATCAGCAGCCAGCTCCAGTGTACACT...TGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp ACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCCGGGATACATCATATTaGGTGCGAAGCACACAGGCT +
Preference number: 4 (lower is better)
Translates to: TSPYMPLLGPKHPPLQVSRDTSY*VRSTQA
Trigger: AGCCTGTGTGCTTCGCACCCAATATGATGTATCCCG...GCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGTACGCCCGGGCTCACTaGGACGGGATACATCATATT +
Preference number: 4 (lower is better)
Translates to: ATAHGIMEQPQVPTCLYSYARAH*DGIHHI
Trigger: AATATGATGTATCCCGTCCCAGTGAGCCCGGGCGTA...CGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGGGAGCCGGTGGAAATaGCAAAGTAGAAAGAAGGGC +
Preference number: 4 (lower is better)
Translates to: ATAHGIMEQPQVPTCLYSGSRWK*QSRKKG
Trigger: GCCCTTCTTTCTACTTTGCCATTTCCACCGGCTCCC...CGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp ACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTAGAGCGAGGGAGCCGGTaGAAATGGCAAAGTAGAAAG +
Preference number: 4 (lower is better)
Translates to: TCRTLQQHMELWNSHKSLERGSR*KWQSRK
Trigger: CTTTCTACTTTGCCATTTCCACCGGCTCCCTCGCTC...TAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp CGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTGGTGCTGAACAGGACTaGGTGCAGGGTGACTTCCAC +
Preference number: 4 (lower is better)
Translates to: RSKTSSTASELLAFLSDVGAEQD*VQGDFH
Trigger: GTGGAAGTCACCCTGCACCCAGTCCTGTTCAGCACC...AACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp ACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAAGGTGCTGAACAGGACTaGGTGCAGGGTGACTTCCAC +
Preference number: 4 (lower is better)
Translates to: TWNYGTATSPYMPLLGPKGAEQD*VQGDFH
Trigger: GTGGAAGTCACCCTGCACCCAGTCCTGTTCAGCACC...TTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCTGTCTGTTGTGCTGCTaGGAAACTGCTCTGTGGAGA +
Preference number: 4 (lower is better)
Translates to: QHMELWNSHKSLHASTRSCLLCC*ETALWR
Trigger: TCTCCACAGAGCAGTTTCCCAGCAGCACAACAGACA...GGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCATGGCGCATGGGCAGTTaGATGAGAAGGAACCATTCC +
Preference number: 4 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPWRMGS*MRRNHS
Trigger: GGAATGGTTCCTTCTCATCCAACTGCCCATGCGCCA...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGAACTGCTGTTGGTGGTaGGCTTGTACTGAAGGGTGC +
Preference number: 4 (lower is better)
Translates to: ATAHGIMEQPQVPTCLYSNCCWW*ACTEGC
Trigger: GCACCCTTCAGTACAAGCCCACCACCAACAGCAGTT...CGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACAACTGCTGTTGGTaGTGGGCTTGTACTGAAGGG +
Preference number: 4 (lower is better)
Translates to: VLAGPCNSTWNYGTATSPYNCCW*WACTEG
Trigger: CCCTTCAGTACAAGCCCACCACCAACAGCAGTTGTA...GGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCCGGTGGAAACATACATaGCGTGCGTCTGCTCGTGAG +
Preference number: 4 (lower is better)
Translates to: CNSTWNYGTATSPYMPLLRWKHT*RASARE
Trigger: CTCACGAGCAGACGCACGCCATGTATGTTTCCACCG...GAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAACTGCTGTTGGTGGTaGGCTTGTACTGAGGTACGT +
Preference number: 4 (lower is better)
Translates to: QHMELWNSHKSLHASTRSNCCWW*ACTEVR
Trigger: ACGTACCTCAGTACAAGCCCACCACCAACAGCAGTT...GGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp GGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCAACTGCTGTTGGTGGTaGGCTTGTACTGAGGTACGT +
Preference number: 4 (lower is better)
Translates to: GTCRTLQQHMELWNSHKSNCCWW*ACTEVR
Trigger: ACGTACCTCAGTACAAGCCCACCACCAACAGCAGTT...GGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp CACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCCTTACAACTGCTGTTaGTGGTGGGCTTGTACTGAG +
Preference number: 4 (lower is better)
Translates to: HKSLHASTRSKTSSTASEPYNCC*WWACTE
Trigger: CTCAGTACAAGCCCACCACCAACAGCAGTTGTAAGG...CTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp ATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACAAGGGAGGAGGGGATTTaGCCTTTCGGTTCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: MELWNSHKSLHASTRSKTREEGI*PFGSSR
Trigger: CCTGGAGGAACCGAAAGGCCAAATCCCCTCCTCCCT...TGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp ACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAAAGGGAGGAGGGGATTTaGCCTTTCGGTTCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: TWNYGTATSPYMPLLGPKREEGI*PFGSSR
Trigger: CCTGGAGGAACCGAAAGGCCAAATCCCCTCCTCCCT...TTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS-3UTR TCA 90 bp GGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCTTGAAATCTGAAGTGTaGGAAGCAGCTCTTGACGGC +
Preference number: 4 (lower is better)
Translates to: GYLQDPATAHGIMEQPQVLKSEV*EAALDG
Trigger: GCCGTCAAGAGCTGCTTCTCACACTTCAGATTTCAA...GACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp GTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTTGAAATCTGAAGTGTaGGAAGCAGCTCTTGACGGC +
Preference number: 4 (lower is better)
Translates to: VLAGPCNSTWNYGTATSPLKSEV*EAALDG
Trigger: GCCGTCAAGAGCTGCTTCTCACACTTCAGATTTCAA...GGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp CACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGGTTCGGGTTGAAATCTaGAGTGTGAGAAGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: HKSLHASTRSKTSSTASEVRVEI*SVRSSS
Trigger: AGAGCTGCTTCTCACACTTCAGATTTCAACCCGAAC...CTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp CTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGGTTCGGGTTGAAATCTaGAGTGTGAGAAGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: LGTCRTLQQHMELWNSHKVRVEI*SVRSSS
Trigger: AGAGCTGCTTCTCACACTTCAGATTTCAACCCGAAC...CTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp TACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTAGCCAGCGTTCGGGTTaGAATCTGAAGTGTGAGAAG +
Preference number: 4 (lower is better)
Translates to: YLQDPATAHGIMEQPQVPSQRSG*NLKCEK
Trigger: CTTCTCACACTTCAGATTTCAACCCGAACGCTGGCT...AGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp CATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCAACTACTCTTTGGTCTaGGCCAGCGTTCGGGTTGAA +
Preference number: 4 (lower is better)
Translates to: HASTRSKTSSTASELLAFNYSLV*ASVRVE
Trigger: TTCAACCCGAACGCTGGCTCAGACCAAAGAGTAGTT...GAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp ACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCGGAGACCTGGGTCTGTaGGTTTTGGGAGATAACCTT +
Preference number: 4 (lower is better)
Translates to: TAHGIMEQPQVPTCLYSVGDLGL*VLGDNL
Trigger: AAGGTTATCTCCCAAAACTCACAGACCCAGGTCTCC...GACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp AACAAAATCAATGAAGTTCTAGTTTTCTGTGCTTCCGGTTGGCAGAAGCAGGAGGGAGTGGCCGAAGGCTaGGGATGGGGAGTATGTGGA +
Preference number: 4 (lower is better)
Translates to: NKINEVLVFCASGWQKQEGVAEG*GWGVCG
Trigger: TCCACATACTCCCCATCCTCAGCCTTCGGCCACTCC...CTCCTGCTTCTGCCAACCGGAAGCACAGAAAACTAGAACTTCATTGATTTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp TGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGAGAAGGGTGGATGGTaGAGACTGTCTGTTGTGCTG +
Preference number: 4 (lower is better)
Translates to: CNSTWNYGTATSPYMPLLEKGGW*RLSVVL
Trigger: CAGCACAACAGACAGTCTTCACCATCCACCCTTCTC...GAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp AACAAAATCAATGAAGTTCTAGTTTTCTGTGCTTCCGGTTGGCAGAAGCAGGAGCCGAGGGTGGCGCTGTaGCTTTGGAGACATCCTTGG +
Preference number: 4 (lower is better)
Translates to: NKINEVLVFCASGWQKQEPRVAL*LWRHPW
Trigger: CCAAGGATGTCTCCAAAGGCACAGCGCCACCCTCGG...CTCCTGCTTCTGCCAACCGGAAGCACAGAAAACTAGAACTTCATTGATTTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR GCA 90 bp AATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTGAGAGTTTCCAATGCTaGTCTGCCTGGGAGACCTGG +
Preference number: 4 (lower is better)
Translates to: NYGTATSPYMPLLGPKHPESFQC*SAWETW
Trigger: CCAGGTCTCCCAGGCAGAGCAGCATTGGAAACTCTC...AGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAATCAGTGTATGGCAGGAGTCGGAGATaGGGCGGGAACAGGCATGGA +
Preference number: 4 (lower is better)
Translates to: SSTASELLAFLSDVKSVYGRSRR*GGNRHG
Trigger: TCCATGCCTGTTCCCGCCGCATCTCCGACTCCTGCC...ATACACTGATTTAACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCATTTTCTTTACTCCCTaGAGGAGAGTTCTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: QSWVLAGPCNSTWNYGTAIFFTP*RRVLPL
Trigger: CAGAGGCAGAACTCTCCTGCAGGGAGTAAAGAAAAT...GGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTACCCCCTCTTGTGCTCTaGATTACTAAGCATGGAAGG +
Preference number: 4 (lower is better)
Translates to: ASTRSKTSSTASELLAFLPPLVL*ITKHGR
Trigger: CCTTCCATGCTTAGTAATGCAGAGCACAAGAGGGGG...TAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACATCCTTCTCTTGTTTaGAGGCTGGGCTGGAAGTCT +
Preference number: 4 (lower is better)
Translates to: PCNSTWNYGTATSPYMPLHPSLV*RLGWKS
Trigger: AGACTTCCAGCCCAGCCTGCAAACAAGAGAAGGATG...TAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTACCAGGCTGAGCATGTaGTGGTGGTGCCATCATCCT +
Preference number: 4 (lower is better)
Translates to: RSKTSSTASELLAFLSDVTRLSM*WWCHHP
Trigger: AGGATGATGGCACCACCAGCACATGCTCAGCCTGGT...AACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGTGCTGCTGGGAAACTaGTCTGTGGAGACTGTGTAT +
Preference number: 4 (lower is better)
Translates to: CRTLQQHMELWNSHKSLHVLLGN*SVETVY
Trigger: ATACACAGTCTCCACAGAGCAGTTTCCCAGCAGCAC...ATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTGTGCTGCTGGGAAACTaGTCTGTGGAGACTGTGTAT +
Preference number: 4 (lower is better)
Translates to: YLQDPATAHGIMEQPQVPVLLGN*SVETVY
Trigger: ATACACAGTCTCCACAGAGCAGTTTCCCAGCAGCAC...AGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACAGTGCTGCTGGGAAACTaGTCTGTGGAGACTGTGTAT +
Preference number: 4 (lower is better)
Translates to: LQDPATAHGIMEQPQVPTVLLGN*SVETVY
Trigger: ATACACAGTCTCCACAGAGCAGTTTCCCAGCAGCAC...TGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTAGAAGACTGTCTGTTGTaGTGCTGGGAAACTGCTCTG +
Preference number: 4 (lower is better)
Translates to: PCNSTWNYGTATSPYMPLEDCLL*CWETAL
Trigger: CAGAGCAGTTTCCCAGCAGCACAACAGACAGTCTTC...TAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATGGGCAGCCTTACAACTaGTGTTGGTGGTGGGCTTGT +
Preference number: 4 (lower is better)
Translates to: WNYGTATSPYMPLLGPKHGQPYN*CWWWAC
Trigger: ACAAGCCCACCACCAACAGCAGTTGTAAGGCTGCCC...ATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp TGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATCCATTAACTACTCTTTaGTCTGAGCCAGCGTTCGGG +
Preference number: 4 (lower is better)
Translates to: CRTLQQHMELWNSHKSLHPLTTL*SEPAFG
Trigger: CCCGAACGCTGGCTCAGACCAAAGAGTAGTTAATGG...ATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACCATTAACTACTCTTTaGTCTGAGCCAGCGTTCGGG +
Preference number: 4 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPPLTTL*SEPAFG
Trigger: CCCGAACGCTGGCTCAGACCAAAGAGTAGTTAATGG...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp AATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTACTGGTCCTTGCCACTaGAGGAGCAGCTGCTTCACT +
Preference number: 4 (lower is better)
Translates to: NYGTATSPYMPLLGPKHPTGPCH*RSSCFT
Trigger: AGTGAAGCAGCTGCTCCTCCAGTGGCAAGGACCAGT...AGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACAGTGTACACTGGAGCTaGCTGCTGATGACCCACCAT +
Preference number: 4 (lower is better)
Translates to: HGIMEQPQVPTCLYSVQNSVHWS*LLMTHH
Trigger: ATGGTGGGTCATCAGCAGCCAGCTCCAGTGTACACT...GTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp ACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCGGGATACATCATATTaGGTGCGAAGCACACAGGCT +
Preference number: 4 (lower is better)
Translates to: TAHGIMEQPQVPTCLYSVRDTSY*VRSTQA
Trigger: AGCCTGTGTGCTTCGCACCCAATATGATGTATCCCG...GACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGAGGCTGGGTGCATCATaGTGCTTTGATGATGTTGGT +
Preference number: 4 (lower is better)
Translates to: HKSLHASTRSKTSSTASERLGAS*CFDDVG
Trigger: ACCAACATCATCAAAGCACCATGATGCACCCAGCCT...CTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAAGGCTGGGTGCATCATaGTGCTTTGATGATGTTGGT +
Preference number: 4 (lower is better)
Translates to: AGYLQDPATAHGIMEQPQRLGAS*CFDDVG
Trigger: ACCAACATCATCAAAGCACCATGATGCACCCAGCCT...TTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp AATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTTGGGACATGCATACATaGCGTGCGTCTGCTCGTGAG +
Preference number: 4 (lower is better)
Translates to: NYGTATSPYMPLLGPKHPWDMHT*RASARE
Trigger: CTCACGAGCAGACGCACGCCATGTATGCATGTCCCA...AGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp GTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTGGGAAACTGCTCTGTaGAGACTGTGTATTAGAGGC +
Preference number: 4 (lower is better)
Translates to: VLAGPCNSTWNYGTATSPWETAL*RLCIRG
Trigger: GCCTCTAATACACAGTCTCCACAGAGCAGTTTCCCA...GGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGTCTGTTGTGCTGCTaGGAAACTGCTCTGTGGAGA +
Preference number: 4 (lower is better)
Translates to: LQDPATAHGIMEQPQVPTCLLCC*ETALWR
Trigger: TCTCCACAGAGCAGTTTCCCAGCAGCACAACAGACA...TGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTATACAACTGCTGTTGGTaGTGGGCTTGTACTGAAGGG +
Preference number: 4 (lower is better)
Translates to: SLHASTRSKTSSTASELLYNCCW*WACTEG
Trigger: CCCTTCAGTACAAGCCCACCACCAACAGCAGTTGTA...TAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAATGGTCTTGTCGCTGTTaGGGCATATTTGGTACTGCT +
Preference number: 4 (lower is better)
Translates to: AGYLQDPATAHGIMEQPQWSCRC*GIFGTA
Trigger: AGCAGTACCAAATATGCCCCAACAGCGACAAGACCA...TTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp GAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCACACGAGCTTTGTACTaGGCACTGGATTCAATTTCT +
Preference number: 4 (lower is better)
Translates to: EQPQVPTCLYSVQNILHCTRALY*ALDSIS
Trigger: AGAAATTGAATCCAGTGCTCAGTACAAAGCTCGTGT...GCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp TGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCAACTACTCTTTGGTCTaGGCCAGCGTTCGGGTTGAA +
Preference number: 4 (lower is better)
Translates to: CNSTWNYGTATSPYMPLLNYSLV*ASVRVE
Trigger: TTCAACCCGAACGCTGGCTCAGACCAAAGAGTAGTT...GAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR TCA 90 bp GCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAAGAAAGAACGAGGGTTaGACTCCTTTGCATTGGGAT +
Preference number: 4 (lower is better)
Translates to: AGYLQDPATAHGIMEQPQRKNEG*TPLHWD
Trigger: ATCCCAATGCAAAGGAGTTCAACCCTCGTTCTTTCT...TTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTGGCATTACCTTGTATaGCAGGACTGTACACATGAG +
Preference number: 4 (lower is better)
Translates to: LGTCRTLQQHMELWNSHKWHYLV*QDCTHE
Trigger: CTCATGTGTACAGTCCTGTCATACAAGGTAATGCCA...CTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp TCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAATCAGTGTATGGATGTGCATACTGCTaGGCGAGGGAGCCGGTGGAA +
Preference number: 4 (lower is better)
Translates to: SSTASELLAFLSDVKSVYGCAYC*AREPVE
Trigger: TTCCACCGGCTCCCTCGCTCAGCAGTATGCACATCC...ATACACTGATTTAACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp ATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACAGCATGGGCAGTTGGATaGGAAGGAACCATTCCTGAC +
Preference number: 4 (lower is better)
Translates to: MELWNSHKSLHASTRSKTAWAVG*EGTIPD
Trigger: GTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGC...TGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp ATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACAGTGGTGGGCTTGTACTaGAGGGTGCGTCATATAAGG +
Preference number: 4 (lower is better)
Translates to: MELWNSHKSLHASTRSKTVVGLY*RVRHIR
Trigger: CCTTATATGACGCACCCTTCAGTACAAGCCCACCAC...TGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCAAGCCTGGAATCTTTTaGCTCAATAGATGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: VLAGPCNSTWNYGTATSPKPGIF*LNRWGQ
Trigger: CTGACCCCATCTATTGAGGCAAAAGATTCCAGGCTT...GGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCAAGCCTGGAATCTTTTaGCTCAATAGATGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: GYLQDPATAHGIMEQPQVKPGIF*LNRWGQ
Trigger: CTGACCCCATCTATTGAGGCAAAAGATTCCAGGCTT...GACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAGGGTTGAACTCCTTTaGATTGGGATTCAATGTCGA +
Preference number: 4 (lower is better)
Translates to: EQPQVPTCLYSVQNILHCRVELL*IGIQCR
Trigger: TCGACATTGAATCCCAATGCAAAGGAGTTCAACCCT...GCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTATACATCATATTGGGTaGGAAGCACACAGGCTGAGT +
Preference number: 4 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCIHHIG*EAHRLS
Trigger: ACTCAGCCTGTGTGCTTCGCACCCAATATGATGTAT...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp GGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCATACATCATATTGGGTaGGAAGCACACAGGCTGAGT +
Preference number: 4 (lower is better)
Translates to: GTCRTLQQHMELWNSHKSIHHIG*EAHRLS
Trigger: ACTCAGCCTGTGTGCTTCGCACCCAATATGATGTAT...GGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATGACTGTCTGTTGTGCTaGTGGGAAACTGCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: WNYGTATSPYMPLLGPKHDCLLC*WETALW
Trigger: CCACAGAGCAGTTTCCCAGCAGCACAACAGACAGTC...ATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACGAAGACTGTCTGTTGTaGTGCTGGGAAACTGCTCTG +
Preference number: 4 (lower is better)
Translates to: HGIMEQPQVPTCLYSVQNEDCLL*CWETAL
Trigger: CAGAGCAGTTTCCCAGCAGCACAACAGACAGTCTTC...GTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp GCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGATTTCTTCTGCTAACTaGTTTGCCCTTGCCTCCCGT +
Preference number: 4 (lower is better)
Translates to: ATAHGIMEQPQVPTCLYSISSAN*FALASR
Trigger: ACGGGAGGCAAGGGCAAACCAGTTAGCAGAAGAAAT...CGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp CTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCAAGCAGCTGCTTCACTTaGGGGATTGTGGGATACAAA +
Preference number: 4 (lower is better)
Translates to: LHASTRSKTSSTASELLASSCFT*GIVGYK
Trigger: TTTGTATCCCACAATCCCCCAAGTGAAGCAGCTGCT...TGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTGGGTCTGTGAGTTTTaGGAGATAACCTTGGAACCC +
Preference number: 4 (lower is better)
Translates to: PATAHGIMEQPQVPTCLYWVCEF*EITLEP
Trigger: GGGTTCCAAGGTTATCTCCCAAAACTCACAGACCCA...GTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp AACAAAATCAATGAAGTTCTAGTTTTCTGTGCTTCCGGTTGGCAGAAGCAGGAGCTCTTGTTTGCAGGCTaGGCTGGAAGTCTGCACCCC +
Preference number: 4 (lower is better)
Translates to: NKINEVLVFCASGWQKQELLFAG*AGSLHP
Trigger: GGGGTGCAGACTTCCAGCCCAGCCTGCAAACAAGAG...CTCCTGCTTCTGCCAACCGGAAGCACAGAAAACTAGAACTTCATTGATTTTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp ATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATACGCCCGGGCTCACTaGGACGGGATACATCATATT +
Preference number: 4 (lower is better)
Translates to: MELWNSHKSLHASTRSKTYARAH*DGIHHI
Trigger: AATATGATGTATCCCGTCCCAGTGAGCCCGGGCGTA...TGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCTCTATATGTCTTaGCTTGGTTCACAGGCATGG +
Preference number: 4 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPLLYMS*LGSQAW
Trigger: CCATGCCTGTGAACCAAGCCAAGACATATAGAGCAG...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCTGCTCTATATGTCTTaGCTTGGTTCACAGGCATGG +
Preference number: 4 (lower is better)
Translates to: WVLAGPCNSTWNYGTATSLLYMS*LGSQAW
Trigger: CCATGCCTGTGAACCAAGCCAAGACATATAGAGCAG...ACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp AATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTGAGCGAGGGAGCCGGTaGAAATGGCAAAGTAGAAAG +
Preference number: 4 (lower is better)
Translates to: NYGTATSPYMPLLGPKHPERGSR*KWQSRK
Trigger: CTTTCTACTTTGCCATTTCCACCGGCTCCCTCGCTC...AGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp TGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATTGGGAAACTGCTCTGTaGAGACTGTGTATTAGAGGC +
Preference number: 4 (lower is better)
Translates to: CRTLQQHMELWNSHKSLHWETAL*RLCIRG
Trigger: GCCTCTAATACACAGTCTCCACAGAGCAGTTTCCCA...ATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCATGGGAAACTGCTCTGTaGAGACTGTGTATTAGAGGC +
Preference number: 4 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPWETAL*RLCIRG
Trigger: GCCTCTAATACACAGTCTCCACAGAGCAGTTTCCCA...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTATGGGAAACTGCTCTGTaGAGACTGTGTATTAGAGGC +
Preference number: 4 (lower is better)
Translates to: PCNSTWNYGTATSPYMPLWETAL*RLCIRG
Trigger: GCCTCTAATACACAGTCTCCACAGAGCAGTTTCCCA...TAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTTGTCGAGACTGGAATaGGCTGTAGTGCACTTTGAG +
Preference number: 4 (lower is better)
Translates to: PATAHGIMEQPQVPTCLYLSRLE*AVVHFE
Trigger: CTCAAAGTGCACTACAGCCCATTCCAGTCTCGACAA...GTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATACAACTGCTGTTGGTaGTGGGCTTGTACTGAGGTA +
Preference number: 4 (lower is better)
Translates to: LHASTRSKTSSTASELLAYNCCW*WACTEV
Trigger: TACCTCAGTACAAGCCCACCACCAACAGCAGTTGTA...TGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp GCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATACAACTGCTGTTGGTaGTGGGCTTGTACTGAGGTA +
Preference number: 4 (lower is better)
Translates to: ASTRSKTSSTASELLAFLYNCCW*WACTEV
Trigger: TACCTCAGTACAAGCCCACCACCAACAGCAGTTGTA...TAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp CGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTTTCTGTGCTTCCGGTTaGCAGAAGCAGGAGAAGGGA +
Preference number: 4 (lower is better)
Translates to: RSKTSSTASELLAFLSDVFCASG*QKQEKG
Trigger: TCCCTTCTCCTGCTTCTGCCAACCGGAAGCACAGAA...AACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS-3UTR TCA 90 bp AATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTGGAGACCTGGGTCTGTaGGTTTTGGGAGATAACCTT +
Preference number: 4 (lower is better)
Translates to: NYGTATSPYMPLLGPKHPGDLGL*VLGDNL
Trigger: AAGGTTATCTCCCAAAACTCACAGACCCAGGTCTCC...AGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTTCAGAAACAACTGGTaGCATACCTTTGTTGTCAGC +
Preference number: 4 (lower is better)
Translates to: RTLQQHMELWNSHKSLHAFRNNW*HTFVVS
Trigger: GCTGACAACAAAGGTATGTCACCAGTTGTTTCTGAA...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp TCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAAGAAAGAACGAGGGTTaGACTCCTTTGCATTGGGAT +
Preference number: 4 (lower is better)
Translates to: SLHASTRSKTSSTASELLRKNEG*TPLHWD
Trigger: ATCCCAATGCAAAGGAGTTCAACCCTCGTTCTTTCT...TAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCAAGAAAGAACGAGGGTTaGACTCCTTTGCATTGGGAT +
Preference number: 4 (lower is better)
Translates to: LHASTRSKTSSTASELLARKNEG*TPLHWD
Trigger: ATCCCAATGCAAAGGAGTTCAACCCTCGTTCTTTCT...TGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp TCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTATGGCATTACCTTGTATaGCAGGACTGTACACATGAG +
Preference number: 4 (lower is better)
Translates to: SLHASTRSKTSSTASELLWHYLV*QDCTHE
Trigger: CTCATGTGTACAGTCCTGTCATACAAGGTAATGCCA...TAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp CTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATGGCATTACCTTGTATaGCAGGACTGTACACATGAG +
Preference number: 4 (lower is better)
Translates to: LHASTRSKTSSTASELLAWHYLV*QDCTHE
Trigger: CTCATGTGTACAGTCCTGTCATACAAGGTAATGCCA...TGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp TCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAATCAGTGTATGACACTAAACCAGGCTaGGCATGTGCTGGTGGTGCC +
Preference number: 4 (lower is better)
Translates to: SSTASELLAFLSDVKSVYDTKPG*ACAGGA
Trigger: GGCACCACCAGCACATGCTCAGCCTGGTTTAGTGTC...ATACACTGATTTAACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTATTTTCTTTACTCCCTaGAGGAGAGTTCTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: YLQDPATAHGIMEQPQVPIFFTP*RRVLPL
Trigger: CAGAGGCAGAACTCTCCTGCAGGGAGTAAAGAAAAT...AGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACAATTTTCTTTACTCCCTaGAGGAGAGTTCTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: LQDPATAHGIMEQPQVPTIFFTP*RRVLPL
Trigger: CAGAGGCAGAACTCTCCTGCAGGGAGTAAAGAAAAT...TGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp AATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTGAAGACTGTCTGTTGTaGTGCTGGGAAACTGCTCTG +
Preference number: 4 (lower is better)
Translates to: NYGTATSPYMPLLGPKHPEDCLL*CWETAL
Trigger: CAGAGCAGTTTCCCAGCAGCACAACAGACAGTCTTC...AGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp ACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGAAGACTGTCTGTTGTaGTGCTGGGAAACTGCTCTG +
Preference number: 4 (lower is better)
Translates to: TRSKTSSTASELLAFLSDEDCLL*CWETAL
Trigger: CAGAGCAGTTTCCCAGCAGCACAACAGACAGTCTTC...ATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAATCAGTGTATCAATGCTGCTCTGCCTaGGAGACCTGGGTCTGTGAG +
Preference number: 4 (lower is better)
Translates to: SSTASELLAFLSDVKSVYQCCSA*ETWVCE
Trigger: CTCACAGACCCAGGTCTCCCAGGCAGAGCAGCATTG...ATACACTGATTTAACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAATCAGTGTATGCCCCGCATGATAAATaGCCGACTGCTGCTGTGGAC +
Preference number: 4 (lower is better)
Translates to: SSTASELLAFLSDVKSVYAPHDK*PTAAVD
Trigger: GTCCACAGCAGCAGTCGGCCATTTATCATGCGGGGC...ATACACTGATTTAACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp AATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTTGTCTGTTGTGCTGCTaGGAAACTGCTCTGTGGAGA +
Preference number: 4 (lower is better)
Translates to: NYGTATSPYMPLLGPKHPCLLCC*ETALWR
Trigger: TCTCCACAGAGCAGTTTCCCAGCAGCACAACAGACA...AGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp ACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATCCTTACAACTGCTGTTaGTGGTGGGCTTGTACTGAG +
Preference number: 4 (lower is better)
Translates to: TRSKTSSTASELLAFLSDPYNCC*WWACTE
Trigger: CTCAGTACAAGCCCACCACCAACAGCAGTTGTAAGG...ATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS-3UTR TCA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCCGAAGTCTGAGCATTTaGACAAAACACTCTCCATTA +
Preference number: 4 (lower is better)
Translates to: RTLQQHMELWNSHKSLHARSLSI*TKHSPL
Trigger: TAATGGAGAGTGTTTTGTTCAAATGCTCAGACTTCG...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR TCA 90 bp TGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCTGGCATTACCTTGTATaGCAGGACTGTACACATGAG +
Preference number: 4 (lower is better)
Translates to: CNSTWNYGTATSPYMPLLWHYLV*QDCTHE
Trigger: CTCATGTGTACAGTCCTGTCATACAAGGTAATGCCA...GAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp CATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATACATCATATTGGGTaGGAAGCACACAGGCTGAGT +
Preference number: 4 (lower is better)
Translates to: HGIMEQPQVPTCLYSVQNIHHIG*EAHRLS
Trigger: ACTCAGCCTGTGTGCTTCGCACCCAATATGATGTAT...GTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp AAAATCAATGAAGTTCTAGTTTTCTGTGCTTCCGGTTGGCAGAAGCAGGAGAAGTGGGGAGTATGTGGATaGAGGGCGGCATTAGGATGT +
Preference number: 4 (lower is better)
Translates to: KINEVLVFCASGWQKQEKWGVCG*RAALGC
Trigger: ACATCCTAATGCCGCCCTGCATCCACATACTCCCCA...CTTCTCCTGCTTCTGCCAACCGGAAGCACAGAAAACTAGAACTTCATTGATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp ACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATAGCAGCTGCTTCACTTaGGGGATTGTGGGATACAAA +
Preference number: 4 (lower is better)
Translates to: TRSKTSSTASELLAFLSDSSCFT*GIVGYK
Trigger: TTTGTATCCCACAATCCCCCAAGTGAAGCAGCTGCT...ATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTTGGGTCTGTGAGTTTTaGGAGATAACCTTGGAACCC +
Preference number: 4 (lower is better)
Translates to: RSKTSSTASELLAFLSDVWVCEF*EITLEP
Trigger: GGGTTCCAAGGTTATCTCCCAAAACTCACAGACCCA...AACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTCTGCTCTATATGTCTTaGCTTGGTTCACAGGCATGG +
Preference number: 4 (lower is better)
Translates to: RSKTSSTASELLAFLSDVLLYMS*LGSQAW
Trigger: CCATGCCTGTGAACCAAGCCAAGACATATAGAGCAG...AACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp CAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCCTGTTGGGGCATATTTaGTACTTTACCTGCTCTATA +
Preference number: 4 (lower is better)
Translates to: QHMELWNSHKSLHASTRSLLGHI*YFTCSI
Trigger: TATAGAGCAGGTAAAGTACCAAATATGCCCCAACAG...GGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp ACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATAGGCTGGGTGCATCATaGTGCTTTGATGATGTTGGT +
Preference number: 4 (lower is better)
Translates to: TRSKTSSTASELLAFLSDRLGAS*CFDDVG
Trigger: ACCAACATCATCAAAGCACCATGATGCACCCAGCCT...ATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATTTGTCGAGACTGGAATaGGCTGTAGTGCACTTTGAG +
Preference number: 4 (lower is better)
Translates to: WNYGTATSPYMPLLGPKHLSRLE*AVVHFE
Trigger: CTCAAAGTGCACTACAGCCCATTCCAGTCTCGACAA...ATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp GTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTTTCGATCCAACAACTaGCGTAAGTATATGAACCAT +
Preference number: 4 (lower is better)
Translates to: VLAGPCNSTWNYGTATSPFRSNN*RKYMNH
Trigger: ATGGTTCATATACTTACGTCAGTTGTTGGATCGAAA...GGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR TCA 90 bp AACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTACACGAGCTTTGTACTaGGCACTGGATTCAATTTCT +
Preference number: 4 (lower is better)
Translates to: NSTWNYGTATSPYMPLLGTRALY*ALDSIS
Trigger: AGAAATTGAATCCAGTGCTCAGTACAAAGCTCGTGT...ACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR GCA 90 bp CGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAGCCTGGAATCTTTTaGCTCAATAGATGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: RSKTSSTASELLAFLSDVKPGIF*LNRWGQ
Trigger: CTGACCCCATCTATTGAGGCAAAAGATTCCAGGCTT...AACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp AACAAAATCAATGAAGTTCTAGTTTTCTGTGCTTCCGGTTGGCAGAAGCAGGAGCATCCTTCTCTTGTTTaGAGGCTGGGCTGGAAGTCT +
Preference number: 4 (lower is better)
Translates to: NKINEVLVFCASGWQKQEHPSLV*RLGWKS
Trigger: AGACTTCCAGCCCAGCCTGCAAACAAGAGAAGGATG...CTCCTGCTTCTGCCAACCGGAAGCACAGAAAACTAGAACTTCATTGATTTTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAATCAGTGTATAGTGTACACTGGAGCTaGCTGCTGATGACCCACCAT +
Preference number: 4 (lower is better)
Translates to: SSTASELLAFLSDVKSVYSVHWS*LLMTHH
Trigger: ATGGTGGGTCATCAGCAGCCAGCTCCAGTGTACACT...ATACACTGATTTAACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp AACAAAATCAATGAAGTTCTAGTTTTCTGTGCTTCCGGTTGGCAGAAGCAGGAGCGGGATACATCATATTaGGTGCGAAGCACACAGGCT +
Preference number: 4 (lower is better)
Translates to: NKINEVLVFCASGWQKQERDTSY*VRSTQA
Trigger: AGCCTGTGTGCTTCGCACCCAATATGATGTATCCCG...CTCCTGCTTCTGCCAACCGGAAGCACAGAAAACTAGAACTTCATTGATTTTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp TGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCTGTTGGGGCATATTTaGTACTTTACCTGCTCTATA +
Preference number: 4 (lower is better)
Translates to: WVLAGPCNSTWNYGTATSLLGHI*YFTCSI
Trigger: TATAGAGCAGGTAAAGTACCAAATATGCCCCAACAG...ACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp TCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAATCAGTGTATGGACCAAAGGCTGATTaGGAAACTGCTGAGGGCTGT +
Preference number: 4 (lower is better)
Translates to: SSTASELLAFLSDVKSVYGPKAD*ETAEGC
Trigger: ACAGCCCTCAGCAGTTTCCCAATCAGCCTTTGGTCC...ATACACTGATTTAACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp ACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTATGTTGTATGGTAATTTaGGACATGCATACATGGCGT +
Preference number: 4 (lower is better)
Translates to: TCRTLQQHMELWNSHKSLCCMVI*DMHTWR
Trigger: ACGCCATGTATGCATGTCCCAAATTACCATACAACA...TAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS-3UTR TCA 90 bp ACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAATTCAGAAACAACTGGTaGCATACCTTTGTTGTCAGC +
Preference number: 4 (lower is better)
Translates to: TWNYGTATSPYMPLLGPKFRNNW*HTFVVS
Trigger: GCTGACAACAAAGGTATGTCACCAGTTGTTTCTGAA...TTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR TCA 90 bp TGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATTTCAGAAACAACTGGTaGCATACCTTTGTTGTCAGC +
Preference number: 4 (lower is better)
Translates to: WNYGTATSPYMPLLGPKHFRNNW*HTFVVS
Trigger: GCTGACAACAAAGGTATGTCACCAGTTGTTTCTGAA...ATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp ACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATAGGGTTGAACTCCTTTaGATTGGGATTCAATGTCGA +
Preference number: 4 (lower is better)
Translates to: TRSKTSSTASELLAFLSDRVELL*IGIQCR
Trigger: TCGACATTGAATCCCAATGCAAAGGAGTTCAACCCT...ATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp AATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTAGGGTTGAACTCCTTTaGATTGGGATTCAATGTCGA +
Preference number: 4 (lower is better)
Translates to: NYGTATSPYMPLLGPKHPRVELL*IGIQCR
Trigger: TCGACATTGAATCCCAATGCAAAGGAGTTCAACCCT...AGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CCA 90 bp ACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATTATTTCTTCACGTTTTaGCCCCGAACTGGATTCTGT +
Preference number: 4 (lower is better)
Translates to: TRSKTSSTASELLAFLSDYFFTF*PRTGFC
Trigger: ACAGAATCCAGTTCGGGGCCAAAACGTGAAGAAATA...ATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR CCA 90 bp CATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACTGTTGTATGGTAATTTaGGACATGCATACATGGCGT +
Preference number: 4 (lower is better)
Translates to: HGIMEQPQVPTCLYSVQNCCMVI*DMHTWR
Trigger: ACGCCATGTATGCATGTCCCAAATTACCATACAACA...GTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS-3UTR CCA 90 bp TCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAATCAGTGTATTGTCTGTTGTGCTGCTaGGAAACTGCTCTGTGGAGA +
Preference number: 4 (lower is better)
Translates to: SSTASELLAFLSDVKSVYCLLCC*ETALWR
Trigger: TCTCCACAGAGCAGTTTCCCAGCAGCACAACAGACA...ATACACTGATTTAACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR GCA 90 bp TGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCAACCATCCTCACGTTTaGATAGATTCCATCAAAAGA +
Preference number: 4 (lower is better)
Translates to: CNSTWNYGTATSPYMPLLNHPHV*IDSIKR
Trigger: TCTTTTGATGGAATCTATGCAAACGTGAGGATGGTT...GAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR CCA 90 bp TCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAATCAGTGTATATTTCTTCTGCTAACTaGTTTGCCCTTGCCTCCCGT +
Preference number: 4 (lower is better)
Translates to: SSTASELLAFLSDVKSVYISSAN*FALASR
Trigger: ACGGGAGGCAAGGGCAAACCAGTTAGCAGAAGAAAT...ATACACTGATTTAACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CCA 90 bp TGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATTCACTGCAGTTTCTCTaGACTGCTGTGTATTTTTCT +
Preference number: 4 (lower is better)
Translates to: WNYGTATSPYMPLLGPKHSLQFL*TAVYFS
Trigger: AGAAAAATACACAGCAGTCCAGAGAAACTGCAGTGA...ATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR GCA 90 bp AATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTAAACTCCTTCATATATaGCTCCGTTTTTCACTTGTA +
Preference number: 4 (lower is better)
Translates to: NYGTATSPYMPLLGPKHPKLLHI*LRFSLV
Trigger: TACAAGTGAAAAACGGAGGCATATATGAAGGAGTTT...AGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR CCA 90 bp AAAATCAATGAAGTTCTAGTTTTCTGTGCTTCCGGTTGGCAGAAGCAGGAGAAGCTGTTGGGGCATATTTaGTACTGCTCTATATGTCTT +
Preference number: 4 (lower is better)
Translates to: KINEVLVFCASGWQKQEKLLGHI*YCSICL
Trigger: AAGACATATAGAGCAGTACCAAATATGCCCCAACAG...CTTCTCCTGCTTCTGCCAACCGGAAGCACAGAAAACTAGAACTTCATTGATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162327.8
CDS GCA 90 bp CACCGAGCAGCCGCCGGGAGCCGGGCCGGGACGCGCCGTGGCCGTTaGTACCAAAACAGTCTGAGGCGCAGGGTGGCGAGCGCGGCCCGC +
Preference number: 5 (lower is better)
Translates to: HRAAAGSRAGTRRGR*YQNSLRRRVASAAR
Trigger: GCGGGCCGCGCTCGCCACCCTGCGCCTCAGACTGTTTTGGTAGCAACGGCCACGGCGCGTCCCGGCCCGGCTCCCGGCGGCTGCTCGGTG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS CCA 90 bp CCGCAGACACCGAGCAGCCGCCGGGAGCCGGGCCGGGACGCGCCGTaGCCGTTGCTACCAAAACAGTCTGAGGCGCAGGGTGGCGAGCGC +
Preference number: 5 (lower is better)
Translates to: PQTPSSRREPGRDAP*PLLPKQSEAQGGER
Trigger: GCGCTCGCCACCCTGCGCCTCAGACTGTTTTGGTAGCAACGGCCACGGCGCGTCCCGGCCCGGCTCCCGGCGGCTGCTCGGTGTCTGCGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS CCA 90 bp GCTGAGGGCTGTAGGCAACGTACTGAGTGGAGTAAGCGGGCGGGGTaGCTACGATGGGTGGCCCTGCCGCGGAGGCTGGGTGCATCATGG +
Preference number: 5 (lower is better)
Translates to: AEGCRQRTEWSKRAG*LRWVALPRRLGASW
Trigger: CCATGATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTAGCCACCCCGCCCGCTTACTCCACTCAGTACGTTGCCTACAGCCCTCAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 90 bp GGCAGGAGTCGGAGATGCGGCGGGAACAGGCATGGAAACGGCTTCTaGAGGGATGATGCCAGCTTGGGGAGAAGCAAGCACAGGCCCGCT +
Preference number: 5 (lower is better)
Translates to: GRSRRCGGNRHGNGF*RDDASLGRSKHRPA
Trigger: AGCGGGCCTGTGCTTGCTTCTCCCCAAGCTGGCATCATCCCTGCAGAAGCCGTTTCCATGCCTGTTCCCGCCGCATCTCCGACTCCTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 90 bp GGCAACGTACTGAGTGGAGTAAGCGGGCGGGGTGGCTACGATGGGTaGCCCTGCCGCGGAGGCTGGGTGCATCATGGTGCTTTGATGATG +
Preference number: 5 (lower is better)
Translates to: GNVLSGVSGRGGYDG*PCRGGWVHHGALMM
Trigger: CATCATCAAAGCACCATGATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTAGCCACCCCGCCCGCTTACTCCACTCAGTACGTTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 90 bp AAGGCTGATTGGGAAACTGCTGAGGGCTGTAGGCAACGTACTGAGTaGAGTAAGCGGGCGGGGTGGCTACGATGGGTGGCCCTGCCGCGG +
Preference number: 5 (lower is better)
Translates to: KADWETAEGCRQRTE*SKRAGWLRWVALPR
Trigger: CCGCGGCAGGGCCACCCATCGTAGCCACCCCGCCCGCTTACTCCACTCAGTACGTTGCCTACAGCCCTCAGCAGTTTCCCAATCAGCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS TCA 90 bp TCGGAGATGCGGCGGGAACAGGCATGGAAACGGCTTCTGCAGGGATaGTGCCAGCTTGGGGAGAAGCAAGCACAGGCCCGCTGGGAGAGT +
Preference number: 5 (lower is better)
Translates to: SEMRREQAWKRLLQG*CQLGEKQAQARWES
Trigger: ACTCTCCCAGCGGGCCTGTGCTTGCTTCTCCCCAAGCTGGCATCATCCCTGCAGAAGCCGTTTCCATGCCTGTTCCCGCCGCATCTCCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS TCA 90 bp GGGAAATGCGCTGTTGTCGAGACTGGAATGGGCTGTAGTGCACTTTaGGCGAGGGCGGCCTGGGGACCGCCGGGTGGCTGTGTCGTCATT +
Preference number: 5 (lower is better)
Translates to: GKCAVVETGMGCSAL*ARAAWGPPGGCVVI
Trigger: AATGACGACACAGCCACCCGGCGGTCCCCAGGCCGCCCTCGCTCAAAGTGCACTACAGCCCATTCCAGTCTCGACAACAGCGCATTTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS CCA 90 bp GTAAGCGGGCGGGGTGGCTACGATGGGTGGCCCTGCCGCGGAGGCTaGGTGCATCATGGTGCTTTGATGATGTTGGTCTTGTCGCTGTTG +
Preference number: 5 (lower is better)
Translates to: VSGRGGYDGWPCRGG*VHHGALMMLVLSLL
Trigger: CAACAGCGACAAGACCAACATCATCAAAGCACCATGATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTAGCCACCCCGCCCGCTTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 90 bp TGTAGGCAACGTACTGAGTGGAGTAAGCGGGCGGGGTGGCTACGATaGGTGGCCCTGCCGCGGAGGCTGGGTGCATCATGGTGCTTTGAT +
Preference number: 5 (lower is better)
Translates to: CRQRTEWSKRAGWLR*VALPRRLGASWCFD
Trigger: ATCAAAGCACCATGATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTAGCCACCCCGCCCGCTTACTCCACTCAGTACGTTGCCTACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS TCA 90 bp CCACCATGCTGGCTTTGCTGCTGTCCGGTGGGAGTGGCCGAAGGCTaGGGATGGGGAGTATGTGGATGCAGGGCGGCATTAGGATGTGCA +
Preference number: 5 (lower is better)
Translates to: PPCWLCCCPVGVAEG*GWGVCGCRAALGCA
Trigger: TGCACATCCTAATGCCGCCCTGCATCCACATACTCCCCATCCTCAGCCTTCGGCCACTCCCACCGGACAGCAGCAAAGCCAGCATGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000051950.14
ENSMUST00000160462.2
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS CCA 90 bp CTGCTGTCCGGTGGGAGTGGCCGAAGGCTGAGGATGGGGAGTATGTaGATGCAGGGCGGCATTAGGATGTGCATACTGCTGAGCGAGGGA +
Preference number: 5 (lower is better)
Translates to: LLSGGSGRRLRMGSM*MQGGIRMCILLSEG
Trigger: TCCCTCGCTCAGCAGTATGCACATCCTAATGCCGCCCTGCATCCACATACTCCCCATCCTCAGCCTTCGGCCACTCCCACCGGACAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000051950.14
ENSMUST00000160462.2
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS CCA 90 bp TGGTGTTGGTGCCAGCCCCGCATGATAAATGGCCGACTGCTGCTGTaGACTGGCCAGATGAAGAGCCTGGGCAGCCTGGTGCTGATGGTG +
Preference number: 5 (lower is better)
Translates to: WCWCQPRMINGRLLL*TGQMKSLGSLVLMV
Trigger: CACCATCAGCACCAGGCTGCCCAGGCTCTTCATCTGGCCAGTCCACAGCAGCAGTCGGCCATTTATCATGCGGGGCTGGCACCAACACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS CCA 90 bp GCGGGAACAGGCATGGAAACGGCTTCTGCAGGGATGATGCCAGCTTaGGGAGAAGCAAGCACAGGCCCGCTGGGAGAGTTTCCAATGCTG +
Preference number: 5 (lower is better)
Translates to: AGTGMETASAGMMPA*GEASTGPLGEFPML
Trigger: CAGCATTGGAAACTCTCCCAGCGGGCCTGTGCTTGCTTCTCCCCAAGCTGGCATCATCCCTGCAGAAGCCGTTTCCATGCCTGTTCCCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 90 bp CAGGTGTCATGGAAGGTGGTGTTGGTGCCAGCCCCGCATGATAAATaGCCGACTGCTGCTGTGGACTGGCCAGATGAAGAGCCTGGGCAG +
Preference number: 5 (lower is better)
Translates to: QVSWKVVLVPAPHDK*PTAAVDWPDEEPGQ
Trigger: CTGCCCAGGCTCTTCATCTGGCCAGTCCACAGCAGCAGTCGGCCATTTATCATGCGGGGCTGGCACCAACACCACCTTCCATGACACCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS CCA 90 bp AAGGGTGCGTCATATAAGGGAAATGCGCTGTTGTCGAGACTGGAATaGGCTGTAGTGCACTTTGAGCGAGGGCGGCCTGGGGACCGCCGG +
Preference number: 5 (lower is better)
Translates to: KGASYKGNALLSRLE*AVVHFERGRPGDRR
Trigger: CCGGCGGTCCCCAGGCCGCCCTCGCTCAAAGTGCACTACAGCCCATTCCAGTCTCGACAACAGCGCATTTCCCTTATATGACGCACCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS TCA 90 bp TGGGGAGTATGTGGATGCAGGGCGGCATTAGGATGTGCATACTGCTaGGCGAGGGAGCCGGTGGAAACATACATGGCGTGCGTCTGCTCG +
Preference number: 5 (lower is better)
Translates to: WGVCGCRAALGCAYC*AREPVETYMACVCS
Trigger: CGAGCAGACGCACGCCATGTATGTTTCCACCGGCTCCCTCGCTCAGCAGTATGCACATCCTAATGCCGCCCTGCATCCACATACTCCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 90 bp AGGAGGGGATTTGGCCTTTCGGTTCCTCCAGGGCAGCCTTACAACTaGTGTTGGTGGTGGGCTTGTACTGAGGTACGTGGGCCATGTGGG +
Preference number: 5 (lower is better)
Translates to: RRGFGLSVPPGQPYN*CWWWACTEVRGPCG
Trigger: CCCACATGGCCCACGTACCTCAGTACAAGCCCACCACCAACAGCAGTTGTAAGGCTGCCCTGGAGGAACCGAAAGGCCAAATCCCCTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS CCA 90 bp GGGTGGCTACGATGGGTGGCCCTGCCGCGGAGGCTGGGTGCATCATaGTGCTTTGATGATGTTGGTCTTGTCGCTGTTGGGGCATATTTG +
Preference number: 5 (lower is better)
Translates to: GWLRWVALPRRLGAS*CFDDVGLVAVGAYL
Trigger: CAAATATGCCCCAACAGCGACAAGACCAACATCATCAAAGCACCATGATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTAGCCACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 90 bp CTTGGGGAGAAGCAAGCACAGGCCCGCTGGGAGAGTTTCCAATGCTaGTCTGCCTGGGAGACCTGGGTCTGTGAGTTTTGGGAGATAACC +
Preference number: 5 (lower is better)
Translates to: LGEKQAQARWESFQC*SAWETWVCEFWEIT
Trigger: GGTTATCTCCCAAAACTCACAGACCCAGGTCTCCCAGGCAGAGCAGCATTGGAAACTCTCCCAGCGGGCCTGTGCTTGCTTCTCCCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 90 bp CAGCTTGGGGAGAAGCAAGCACAGGCCCGCTGGGAGAGTTTCCAATaGTGCTCTGCCTGGGAGACCTGGGTCTGTGAGTTTTGGGAGATA +
Preference number: 5 (lower is better)
Translates to: QLGEKQAQARWESFQ*CSAWETWVCEFWEI
Trigger: TATCTCCCAAAACTCACAGACCCAGGTCTCCCAGGCAGAGCAGCATTGGAAACTCTCCCAGCGGGCCTGTGCTTGCTTCTCCCCAAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 90 bp AGGTTGTACGCCCGGGCTCACTGGGACGGGATACATCATATTGGGTaGGAAGCACACAGGCTGAGTGTACACTGGAGCTGGCTGCTGATG +
Preference number: 5 (lower is better)
Translates to: RLYARAHWDGIHHIG*EAHRLSVHWSWLLM
Trigger: CATCAGCAGCCAGCTCCAGTGTACACTCAGCCTGTGTGCTTCGCACCCAATATGATGTATCCCGTCCCAGTGAGCCCGGGCGTACAACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 90 bp GAGCCAGAACTGAGGTACGTGGGCCATGTGGGGTGGGGTGGTGTATaGCGGCTGAACATGAGAAGGGTGGATGGTGAAGACTGTCTGTTG +
Preference number: 5 (lower is better)
Translates to: EPELRYVGHVGWGGV*RLNMRRVDGEDCLL
Trigger: CAACAGACAGTCTTCACCATCCACCCTTCTCATGTTCAGCCGGCATACACCACCCCACCCCACATGGCCCACGTACCTCAGTTCTGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160220.2
CDS GCA 90 bp AGGCTGAGGATGGGGAGTATGTGGATGCAGGGCGGCATTAGGATGTaGATACTGCTGAGCGAGGGAGCCGGTGGAAACATACATGGCGTG +
Preference number: 5 (lower is better)
Translates to: RLRMGSMWMQGGIRM*ILLSEGAGGNIHGV
Trigger: CACGCCATGTATGTTTCCACCGGCTCCCTCGCTCAGCAGTATGCACATCCTAATGCCGCCCTGCATCCACATACTCCCCATCCTCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 90 bp GGGCTTGTACTGAGGTACGTGGGCCATGTGGGGTGGGGTGGTGTATaGCGGCTGAACATGAGAAGGGTGGATGGTGAAGACTGTCTGTTG +
Preference number: 5 (lower is better)
Translates to: GLVLRYVGHVGWGGV*RLNMRRVDGEDCLL
Trigger: CAACAGACAGTCTTCACCATCCACCCTTCTCATGTTCAGCCGGCATACACCACCCCACCCCACATGGCCCACGTACCTCAGTACAAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS TCA 90 bp AATTCTAGGCCACTAGACATGGAGCCTCTCCCAGCAGAGACTCTGTaGTTCCGAGGGTGGCGCTGTGCCTTTGGAGACATCCTTGGGGGT +
Preference number: 5 (lower is better)
Translates to: NSRPLDMEPLPAETL*FRGWRCAFGDILGG
Trigger: ACCCCCAAGGATGTCTCCAAAGGCACAGCGCCACCCTCGGAATCACAGAGTCTCTGCTGGGAGAGGCTCCATGTCTAGTGGCCTAGAATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
CDS GCA 90 bp CTGATCTTGAAGCCTGGAATCTTTTGCCTCAATAGATGGGGTCAGTaGTCTGTTGGATGCAGGGCTGGCAGGAGTCGGAGATGCGGCGGG +
Preference number: 5 (lower is better)
Translates to: LILKPGIFCLNRWGQ*SVGCRAGRSRRCGG
Trigger: CCCGCCGCATCTCCGACTCCTGCCAGCCCTGCATCCAACAGAGCACTGACCCCATCTATTGAGGCAAAAGATTCCAGGCTTCAAGATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 90 bp TCTTCTCTGTCATCCTTCTCTTGTTTGCAGGCTGGGCTGGAAGTCTaGACCCCTTGGGATGTGACCTCAGGCCCCCTCTTGTGCTCTGCA +
Preference number: 5 (lower is better)
Translates to: SSLSSFSCLQAGLEV*TPWDVTSGPLLCSA
Trigger: TGCAGAGCACAAGAGGGGGCCTGAGGTCACATCCCAAGGGGTGCAGACTTCCAGCCCAGCCTGCAAACAAGAGAAGGATGACAGAGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 90 bp TGGCTACGATGGGTGGCCCTGCCGCGGAGGCTGGGTGCATCATGGTaGTTTGATGATGTTGGTCTTGTCGCTGTTGGGGCATATTTGGTA +
Preference number: 5 (lower is better)
Translates to: WLRWVALPRRLGASW*FDDVGLVAVGAYLV
Trigger: TACCAAATATGCCCCAACAGCGACAAGACCAACATCATCAAAGCACCATGATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 90 bp TGGAGACTGTGTATTAGAGGCAGGTGTCATGGAAGGTGGTGTTGGTaGCAGCCCCGCATGATAAATGGCCGACTGCTGCTGTGGACTGGC +
Preference number: 5 (lower is better)
Translates to: WRLCIRGRCHGRWCW*QPRMINGRLLLWTG
Trigger: GCCAGTCCACAGCAGCAGTCGGCCATTTATCATGCGGGGCTGGCACCAACACCACCTTCCATGACACCTGCCTCTAATACACAGTCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS GCA 90 bp GCTTGCAGATGTGGACTTTTGAACGCTGCCCACCTCTGGCCAGCCTaGCTTCTGCTGAAGCCAACTGCTAATCCACCCGAGAGGGAATCA +
Preference number: 5 (lower is better)
Translates to: ACRCGLLNAAHLWPA*LLLKPTANPPERES
Trigger: TGATTCCCTCTCGGGTGGATTAGCAGTTGGCTTCAGCAGAAGGCAGGCTGGCCAGAGGTGGGCAGCGTTCAAAAGTCCACATCTGCAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160220.2
CDS GCA 90 bp GGAGCCTCTCCCAGCAGAGACTCTGTGATTCCGAGGGTGGCGCTGTaGCTTTGGAGACATCCTTGGGGGTCCTCCATTAACTACTCTTTG +
Preference number: 5 (lower is better)
Translates to: GASPSRDSVIPRVAL*LWRHPWGSSINYSL
Trigger: CAAAGAGTAGTTAATGGAGGACCCCCAAGGATGTCTCCAAAGGCACAGCGCCACCCTCGGAATCACAGAGTCTCTGCTGGGAGAGGCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160821.6
CDS-3UTR CAA 90 bp GGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGTTATTGTCCCTAGTGTaGGGGCCATGCCCCTCCCGG +
Preference number: 5 (lower is better)
Translates to: GTATSPYMPLLGPKHPPLLLSLV*GPCPSR
Trigger: CCGGGAGGGGCATGGCCCCAACACTAGGGACAATAA...CAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CAA 90 bp GCAAGCAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACTGCAGGACTGGTCCTaGCCACTGGAGGAGCAGCTG +
Preference number: 5 (lower is better)
Translates to: ASRAGYLQDPATAHGIMELQDWS*PLEEQL
Trigger: CAGCTGCTCCTCCAGTGGCAAGGACCAGTCCTGCAG...TTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTGCTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp GCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAACTGCAGGACTGGTCCTaGCCACTGGAGGAGCAGCTG +
Preference number: 5 (lower is better)
Translates to: AGYLQDPATAHGIMEQPQLQDWS*PLEEQL
Trigger: CAGCTGCTCCTCCAGTGGCAAGGACCAGTCCTGCAG...TTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGGGAAGTCTGCACCCCTaGGGATGTGACCTCAGGCCC +
Preference number: 5 (lower is better)
Translates to: LGTCRTLQQHMELWNSHKGSLHP*GCDLRP
Trigger: GGGCCTGAGGTCACATCCCAAGGGGTGCAGACTTCC...CTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp GGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCGGAAGTCTGCACCCCTaGGGATGTGACCTCAGGCCC +
Preference number: 5 (lower is better)
Translates to: GYLQDPATAHGIMEQPQVGSLHP*GCDLRP
Trigger: GGGCCTGAGGTCACATCCCAAGGGGTGCAGACTTCC...GACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp GCGCATGGGCAGTTGGATGAGAAGGAACCATTCCTGACTGTACATGAGCCTGAGTCCACCATGCTGGCTTaGCTGCTGTCCGGTGGGAGT +
Preference number: 5 (lower is better)
Translates to: AHGQLDEKEPFLTVHEPESTMLA*LLSGGS
Trigger: ACTCCCACCGGACAGCAGCAAAGCCAGCATGGTGGA...CTCAGGCTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
CDS TCA 90 bp CTGATGACCCACCATAGATGGGCTGGGTTGTGCTTGAGGCCGAGGTaGCGTTGGGGTAGTAGAAGGCTTTGGCTGAGAGAAAGAACGAGG +
Preference number: 5 (lower is better)
Translates to: LMTHHRWAGLCLRPR*RWGSRRLWLRERTR
Trigger: CCTCGTTCTTTCTCTCAGCCAAAGCCTTCTACTACCCCAACGTCACCTCGGCCTCAAGCACAACCCAGCCCATCTATGGTGGGTCATCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 90 bp AGGCTGAGGATGGGGAGTATGTGGATGCAGGGCGGCATTAGGATGTaGATACTGCTGAGCGAGGGAGCCGGTGGAAATGGCAAAGTAGAA +
Preference number: 5 (lower is better)
Translates to: RLRMGSMWMQGGIRM*ILLSEGAGGNGKVE
Trigger: TTCTACTTTGCCATTTCCACCGGCTCCCTCGCTCAGCAGTATGCACATCCTAATGCCGCCCTGCATCCACATACTCCCCATCCTCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000160462.2
ENSMUST00000161159.8
CDS CCA 90 bp TCATCCTTCTCTTGTTTGCAGGCTGGGCTGGAAGTCTGCACCCCTTaGGATGTGACCTCAGGCCCCCTCTTGTGCTCTGCATTACTAAGC +
Preference number: 5 (lower is better)
Translates to: SSFSCLQAGLEVCTP*DVTSGPLLCSALLS
Trigger: GCTTAGTAATGCAGAGCACAAGAGGGGGCCTGAGGTCACATCCCAAGGGGTGCAGACTTCCAGCCCAGCCTGCAAACAAGAGAAGGATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 90 bp CATCATATTGGGTGCGAAGCACACAGGCTGAGTGTACACTGGAGCTaGCTGCTGATGACCCACCATAGATGGGCTGGGTTGTGCTTGAGG +
Preference number: 5 (lower is better)
Translates to: HHIGCEAHRLSVHWS*LLMTHHRWAGLCLR
Trigger: CCTCAAGCACAACCCAGCCCATCTATGGTGGGTCATCAGCAGCCAGCTCCAGTGTACACTCAGCCTGTGTGCTTCGCACCCAATATGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 90 bp GGGATACATCATATTGGGTGCGAAGCACACAGGCTGAGTGTACACTaGAGCTGGCTGCTGATGACCCACCATAGATGGGCTGGGTTGTGC +
Preference number: 5 (lower is better)
Translates to: GIHHIGCEAHRLSVH*SWLLMTHHRWAGLC
Trigger: GCACAACCCAGCCCATCTATGGTGGGTCATCAGCAGCCAGCTCCAGTGTACACTCAGCCTGTGTGCTTCGCACCCAATATGATGTATCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 90 bp ATAAAGGTTGTACGCCCGGGCTCACTGGGACGGGATACATCATATTaGGTGCGAAGCACACAGGCTGAGTGTACACTGGAGCTGGCTGCT +
Preference number: 5 (lower is better)
Translates to: IKVVRPGSLGRDTSY*VRSTQAECTLELAA
Trigger: AGCAGCCAGCTCCAGTGTACACTCAGCCTGTGTGCTTCGCACCCAATATGATGTATCCCGTCCCAGTGAGCCCGGGCGTACAACCTTTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCAGGGGTCAGTGCTCTGTaGGATGCAGGGCTGGCAGGA +
Preference number: 5 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPGVSAL*DAGLAG
Trigger: TCCTGCCAGCCCTGCATCCAACAGAGCACTGACCCC...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGGGGTCAGTGCTCTGTaGGATGCAGGGCTGGCAGGA +
Preference number: 5 (lower is better)
Translates to: SLHASTRSKTSSTASELLGVSAL*DAGLAG
Trigger: TCCTGCCAGCCCTGCATCCAACAGAGCACTGACCCC...TAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp AGCAAGCAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGACTGCCACTGGTACAGTaGCTGCTGCTGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: SKQSWVLAGPCNSTWNYGLPLVQ*LLLLLL
Trigger: CAGCAGCAGCAGCAGCAGCAACTGTACCAGTGGCAG...TCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTGCTTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp GGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCTCCACCATGCTGGCTTaGCTGCTGTCCGGTGGGAGT +
Preference number: 5 (lower is better)
Translates to: GYLQDPATAHGIMEQPQVSTMLA*LLSGGS
Trigger: ACTCCCACCGGACAGCAGCAAAGCCAGCATGGTGGA...GACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS GCA 90 bp CCCTGCAGGAGAGTTCTGCCTCTGATCTTGAAGCCTGGAATCTTTTaGCTCAATAGATGGGGTCAGTGCTCTGTTGGATGCAGGGCTGGC +
Preference number: 5 (lower is better)
Translates to: PCRRVLPLILKPGIF*LNRWGQCSVGCRAG
Trigger: GCCAGCCCTGCATCCAACAGAGCACTGACCCCATCTATTGAGGCAAAAGATTCCAGGCTTCAAGATCAGAGGCAGAACTCTCCTGCAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp ACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTATTATTGTCCCTAGTGTaGGGGCCATGCCCCTCCCGG +
Preference number: 5 (lower is better)
Translates to: TCRTLQQHMELWNSHKSLLLSLV*GPCPSR
Trigger: CCGGGAGGGGCATGGCCCCAACACTAGGGACAATAA...TAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CAA 90 bp GTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCAGGGATGATGCCAGCTaGGGGAGAAGCAAGCACAGG +
Preference number: 5 (lower is better)
Translates to: VLAGPCNSTWNYGTATSPRDDAS*GRSKHR
Trigger: CCTGTGCTTGCTTCTCCCCAAGCTGGCATCATCCCT...GGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp AACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTGGGGTCAGTGCTCTGTaGGATGCAGGGCTGGCAGGA +
Preference number: 5 (lower is better)
Translates to: NSTWNYGTATSPYMPLLGGVSAL*DAGLAG
Trigger: TCCTGCCAGCCCTGCATCCAACAGAGCACTGACCCC...ACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATCCACCATGCTGGCTTaGCTGCTGTCCGGTGGGAGT +
Preference number: 5 (lower is better)
Translates to: LQDPATAHGIMEQPQVPTSTMLA*LLSGGS
Trigger: ACTCCCACCGGACAGCAGCAAAGCCAGCATGGTGGA...TGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp GTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTCATGGAAGGTGGTGTaGGTGCCAGCCCCGCATGAT +
Preference number: 5 (lower is better)
Translates to: VLAGPCNSTWNYGTATSPSWKVV*VPAPHD
Trigger: ATCATGCGGGGCTGGCACCAACACCACCTTCCATGA...GGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp GAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCTTTCTGTGCTTCCGGTaGGCAGAAGCAGGAGAAGGG +
Preference number: 5 (lower is better)
Translates to: EQPQVPTCLYSVQNILHCFLCFR*AEAGEG
Trigger: CCCTTCTCCTGCTTCTGCCAACCGGAAGCACAGAAA...GCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS CCA 90 bp GTTCTGCCTCTGATCTTGAAGCCTGGAATCTTTTGCCTCAATAGATaGGGTCAGTGCTCTGTTGGATGCAGGGCTGGCAGGAGTCGGAGA +
Preference number: 5 (lower is better)
Translates to: VLPLILKPGIFCLNR*GQCSVGCRAGRSRR
Trigger: TCTCCGACTCCTGCCAGCCCTGCATCCAACAGAGCACTGACCCCATCTATTGAGGCAAAAGATTCCAGGCTTCAAGATCAGAGGCAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTGGTGGCGCTGTGCCTTaGGAGACATCCTTGGGGGTC +
Preference number: 5 (lower is better)
Translates to: RSKTSSTASELLAFLSDVGGAVP*ETSLGV
Trigger: GACCCCCAAGGATGTCTCCAAAGGCACAGCGCCACC...AACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CAA 90 bp TGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATAGGGATGATGCCAGCTaGGGGAGAAGCAAGCACAGG +
Preference number: 5 (lower is better)
Translates to: CRTLQQHMELWNSHKSLHRDDAS*GRSKHR
Trigger: CCTGTGCTTGCTTCTCCCCAAGCTGGCATCATCCCT...ATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTGGAAGTCTGCACCCCTaGGGATGTGACCTCAGGCCC +
Preference number: 5 (lower is better)
Translates to: RSKTSSTASELLAFLSDVGSLHP*GCDLRP
Trigger: GGGCCTGAGGTCACATCCCAAGGGGTGCAGACTTCC...AACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp GAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCGGTGCTTTGATGATGTaGGTCTTGTCGCTGTTGGGG +
Preference number: 5 (lower is better)
Translates to: EQPQVPTCLYSVQNILHCGALMM*VLSLLG
Trigger: CCCCAACAGCGACAAGACCAACATCATCAAAGCACC...GCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATCATGGAAGGTGGTGTaGGTGCCAGCCCCGCATGAT +
Preference number: 5 (lower is better)
Translates to: LHASTRSKTSSTASELLASWKVV*VPAPHD
Trigger: ATCATGCGGGGCTGGCACCAACACCACCTTCCATGA...TGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCTCATGGAAGGTGGTGTaGGTGCCAGCCCCGCATGAT +
Preference number: 5 (lower is better)
Translates to: HASTRSKTSSTASELLAFSWKVV*VPAPHD
Trigger: ATCATGCGGGGCTGGCACCAACACCACCTTCCATGA...GAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp GGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGGGTGAAGACTGTCTGTaGTGCTGCTGGGAAACTGCT +
Preference number: 5 (lower is better)
Translates to: GTATSPYMPLLGPKHPPLGEDCL*CCWETA
Trigger: AGCAGTTTCCCAGCAGCACAACAGACAGTCTTCACC...CAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCAAGGGAAATGCGCTGTaGTCGAGACTGGAATGGGCT +
Preference number: 5 (lower is better)
Translates to: QSWVLAGPCNSTWNYGTAKGNAL*SRLEWA
Trigger: AGCCCATTCCAGTCTCGACAACAGCGCATTTCCCTT...GGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTAAGGGAGGAGGGGATTaGGCCTTTCGGTTCCTCCAG +
Preference number: 5 (lower is better)
Translates to: YLQDPATAHGIMEQPQVPKGGGD*AFRFLQ
Trigger: CTGGAGGAACCGAAAGGCCAAATCCCCTCCTCCCTT...AGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS-3UTR CAA 90 bp TGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTAAGGGAGGAGGGGATTaGGCCTTTCGGTTCCTCCAG +
Preference number: 5 (lower is better)
Translates to: WVLAGPCNSTWNYGTATSKGGGD*AFRFLQ
Trigger: CTGGAGGAACCGAAAGGCCAAATCCCCTCCTCCCTT...ACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS CCA 90 bp GATGCTGAGACTGATAATGCGGCACATGCTGGACCAAAGGCTGATTaGGAAACTGCTGAGGGCTGTAGGCAACGTACTGAGTGGAGTAAG +
Preference number: 5 (lower is better)
Translates to: DAETDNAAHAGPKAD*ETAEGCRQRTEWSK
Trigger: CTTACTCCACTCAGTACGTTGCCTACAGCCCTCAGCAGTTTCCCAATCAGCCTTTGGTCCAGCATGTGCCGCATTATCAGTCTCAGCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp GCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGAGCAGCTGCTTCACTaGGGGGATTGTGGGATACAA +
Preference number: 5 (lower is better)
Translates to: AGYLQDPATAHGIMEQPQEQLLH*GDCGIQ
Trigger: TTGTATCCCACAATCCCCCAAGTGAAGCAGCTGCTC...TTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp ACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACTGCCACTGGTACAGTaGCTGCTGCTGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: TWNYGTATSPYMPLLGPKLPLVQ*LLLLLL
Trigger: CAGCAGCAGCAGCAGCAGCAACTGTACCAGTGGCAG...TTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp ATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACACTGCCACTGGTACAGTaGCTGCTGCTGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: MELWNSHKSLHASTRSKTLPLVQ*LLLLLL
Trigger: CAGCAGCAGCAGCAGCAGCAACTGTACCAGTGGCAG...TGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp GCAAGCAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAATCATCCTTCTCTTGTTaGCAGGCTGGGCTGGAAGTC +
Preference number: 5 (lower is better)
Translates to: ASRAGYLQDPATAHGIMESSFSC*QAGLEV
Trigger: GACTTCCAGCCCAGCCTGCAAACAAGAGAAGGATGA...TTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTGCTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATTCCACCATGCTGGCTTaGCTGCTGTCCGGTGGGAGT +
Preference number: 5 (lower is better)
Translates to: WNYGTATSPYMPLLGPKHSTMLA*LLSGGS
Trigger: ACTCCCACCGGACAGCAGCAAAGCCAGCATGGTGGA...ATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp ACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAATCCACCATGCTGGCTTaGCTGCTGTCCGGTGGGAGT +
Preference number: 5 (lower is better)
Translates to: TWNYGTATSPYMPLLGPKSTMLA*LLSGGS
Trigger: ACTCCCACCGGACAGCAGCAAAGCCAGCATGGTGGA...TTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp GCAAGCAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAAGGTGAAGACTGTCTGTaGTGCTGCTGGGAAACTGCT +
Preference number: 5 (lower is better)
Translates to: ASRAGYLQDPATAHGIMEGEDCL*CCWETA
Trigger: AGCAGTTTCCCAGCAGCACAACAGACAGTCTTCACC...TTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTGCTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTGGTGAAGACTGTCTGTaGTGCTGCTGGGAAACTGCT +
Preference number: 5 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCGEDCL*CCWETA
Trigger: AGCAGTTTCCCAGCAGCACAACAGACAGTCTTCACC...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp ACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTTGGCGCATGGGCAGTaGGATGAGAAGGAACCATTC +
Preference number: 5 (lower is better)
Translates to: TSPYMPLLGPKHPPLQVSLAHGQ*DEKEPF
Trigger: GAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAA...GCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS TCA 90 bp GCTGAGCATGTGCTGGTGGTGCCATCATCCTGGCATTACCTTGTATaGCAGGACTGTACACATGAGGATGCTGAGACTGATAATGCGGCA +
Preference number: 5 (lower is better)
Translates to: AEHVLVVPSSWHYLV*QDCTHEDAETDNAA
Trigger: TGCCGCATTATCAGTCTCAGCATCCTCATGTGTACAGTCCTGTCATACAAGGTAATGCCAGGATGATGGCACCACCAGCACATGCTCAGC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGAGCAGCTGCTTCACTaGGGGGATTGTGGGATACAA +
Preference number: 5 (lower is better)
Translates to: CRTLQQHMELWNSHKSLHEQLLH*GDCGIQ
Trigger: TTGTATCCCACAATCCCCCAAGTGAAGCAGCTGCTC...ATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp ATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACAAGGGATGATGCCAGCTaGGGGAGAAGCAAGCACAGG +
Preference number: 5 (lower is better)
Translates to: MELWNSHKSLHASTRSKTRDDAS*GRSKHR
Trigger: CCTGTGCTTGCTTCTCCCCAAGCTGGCATCATCCCT...TGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp ACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGAGATGCTAGGGCTGTaGGTCTTGCTGCTGCCACTG +
Preference number: 5 (lower is better)
Translates to: TRSKTSSTASELLAFLSDEMLGL*VLLLPL
Trigger: CAGTGGCAGCAGCAAGACCAACAGCCCTAGCATCTC...ATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp ACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAAGAGATGCTAGGGCTGTaGGTCTTGCTGCTGCCACTG +
Preference number: 5 (lower is better)
Translates to: TWNYGTATSPYMPLLGPKEMLGL*VLLLPL
Trigger: CAGTGGCAGCAGCAAGACCAACAGCCCTAGCATCTC...TTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATGAGATGCTAGGGCTGTaGGTCTTGCTGCTGCCACTG +
Preference number: 5 (lower is better)
Translates to: WNYGTATSPYMPLLGPKHEMLGL*VLLLPL
Trigger: CAGTGGCAGCAGCAAGACCAACAGCCCTAGCATCTC...ATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATTCATCCTTCTCTTGTTaGCAGGCTGGGCTGGAAGTC +
Preference number: 5 (lower is better)
Translates to: CRTLQQHMELWNSHKSLHSSFSC*QAGLEV
Trigger: GACTTCCAGCCCAGCCTGCAAACAAGAGAAGGATGA...ATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCATCATCCTTCTCTTGTTaGCAGGCTGGGCTGGAAGTC +
Preference number: 5 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPSSFSC*QAGLEV
Trigger: GACTTCCAGCCCAGCCTGCAAACAAGAGAAGGATGA...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTTCTGTCATCCTTCTCTaGTTTGCAGGCTGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: WVLAGPCNSTWNYGTATSSVILL*FAGWAG
Trigger: TCCAGCCCAGCCTGCAAACAAGAGAAGGATGACAGA...ACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp ACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTATCTGTCATCCTTCTCTaGTTTGCAGGCTGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: TCRTLQQHMELWNSHKSLSVILL*FAGWAG
Trigger: TCCAGCCCAGCCTGCAAACAAGAGAAGGATGACAGA...TAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCAACGGGATACATCATATaGGGTGCGAAGCACACAGGC +
Preference number: 5 (lower is better)
Translates to: LHASTRSKTSSTASELLATGYII*GAKHTG
Trigger: GCCTGTGTGCTTCGCACCCAATATGATGTATCCCGT...TGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp ACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTAACGGGATACATCATATaGGGTGCGAAGCACACAGGC +
Preference number: 5 (lower is better)
Translates to: TCRTLQQHMELWNSHKSLTGYII*GAKHTG
Trigger: GCCTGTGTGCTTCGCACCCAATATGATGTATCCCGT...TAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCAGGTGCTTTGATGATGTaGGTCTTGTCGCTGTTGGGG +
Preference number: 5 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPGALMM*VLSLLG
Trigger: CCCCAACAGCGACAAGACCAACATCATCAAAGCACC...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp ATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCATGGAAGGTGGTGTaGGTGCCAGCCCCGCATGAT +
Preference number: 5 (lower is better)
Translates to: MELWNSHKSLHASTRSKTSWKVV*VPAPHD
Trigger: ATCATGCGGGGCTGGCACCAACACCACCTTCCATGA...TGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGGTGAAGACTGTCTGTaGTGCTGCTGGGAAACTGCT +
Preference number: 5 (lower is better)
Translates to: SLHASTRSKTSSTASELLGEDCL*CCWETA
Trigger: AGCAGTTTCCCAGCAGCACAACAGACAGTCTTCACC...TAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCATTGGCGCATGGGCAGTaGGATGAGAAGGAACCATTC +
Preference number: 5 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPLAHGQ*DEKEPF
Trigger: GAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAA...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp GGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCTCGTCATTAGCATCATaGGCGCATGGGCAGTTGGAT +
Preference number: 5 (lower is better)
Translates to: GTCRTLQQHMELWNSHKSSSLAS*AHGQLD
Trigger: ATCCAACTGCCCATGCGCCAATGATGCTAATGACGA...GGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCTTTCTGTGCTTCCGGTaGGCAGAAGCAGGAGAAGGG +
Preference number: 5 (lower is better)
Translates to: CNSTWNYGTATSPYMPLLFLCFR*AEAGEG
Trigger: CCCTTCTCCTGCTTCTGCCAACCGGAAGCACAGAAA...GAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS TCA 90 bp TCCTCACTCCGGTCATCATTCTCAAGGGCGACACGAGCTTTGTACTaGGCACTGGATTCAATTTCTTCTGCTAACTGGTTTGCCCTTGCC +
Preference number: 5 (lower is better)
Translates to: SSLRSSFSRATRALY*ALDSISSANWFALA
Trigger: GGCAAGGGCAAACCAGTTAGCAGAAGAAATTGAATCCAGTGCTCAGTACAAAGCTCGTGTCGCCCTTGAGAATGATGACCGGAGTGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000225761.2
CDS-3UTR CAA 90 bp GGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGGCCTCCGTTTTTCACTaGTACTTCACATTTCGATCC +
Preference number: 5 (lower is better)
Translates to: GTATSPYMPLLGPKHPPLASVFH*YFTFRS
Trigger: GGATCGAAATGTGAAGTACAAGTGAAAAACGGAGGC...CAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR CAA 90 bp CATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACCCTTTGGAGACATCCTaGGGGGTCCTTCTGAAGACA +
Preference number: 5 (lower is better)
Translates to: HGIMEQPQVPTCLYSVQNPLETS*GVLLKT
Trigger: TGTCTTCAGAAGGACCCCCAAGGATGTCTCCAAAGG...GTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CAA 90 bp TCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAATCAGTGTATGGTGGCGCTGTGCCTTaGGAGACATCCTTGGGGGTC +
Preference number: 5 (lower is better)
Translates to: SSTASELLAFLSDVKSVYGGAVP*ETSLGV
Trigger: GACCCCCAAGGATGTCTCCAAAGGCACAGCGCCACC...ATACACTGATTTAACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CAA 90 bp CTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGGTTCTGCCTCTGATCTaGAAGCCTGGAATCTTTTGC +
Preference number: 5 (lower is better)
Translates to: LGTCRTLQQHMELWNSHKVLPLI*KPGIFC
Trigger: GCAAAAGATTCCAGGCTTCAAGATCAGAGGCAGAAC...CTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCGAGAAAGAACGAGGGTaGAACTCCTTTGCATTGGGA +
Preference number: 5 (lower is better)
Translates to: RTLQQHMELWNSHKSLHAEKERG*NSFALG
Trigger: TCCCAATGCAAAGGAGTTCAACCCTCGTTCTTTCTC...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCTATATGTCTTGGCTaGGTTCACAGGCATGGGCGT +
Preference number: 5 (lower is better)
Translates to: QQHMELWNSHKSLHASTRSICLG*VHRHGR
Trigger: ACGCCCATGCCTGTGAACCAAGCCAAGACATATAGA...CCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CAGAGCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCTTGGTCTTGTCGCTGTaGGGGCATATTTGGTACTTT +
Preference number: 5 (lower is better)
Translates to: QSWVLAGPCNSTWNYGTALVLSL*GHIWYF
Trigger: AAAGTACCAAATATGCCCCAACAGCGACAAGACCAA...GGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CAA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCGTGCATCATGGTGCTTaGATGATGTTGGTCTTGTCG +
Preference number: 5 (lower is better)
Translates to: RTLQQHMELWNSHKSLHAVHHGA*MMLVLS
Trigger: CGACAAGACCAACATCATCAAAGCACCATGATGCAC...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCTCGTCATTAGCATCATaGGCGCATGGGCAGTTGGAT +
Preference number: 5 (lower is better)
Translates to: HASTRSKTSSTASELLAFSSLAS*AHGQLD
Trigger: ATCCAACTGCCCATGCGCCAATGATGCTAATGACGA...GAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp ACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCTTGGTCTTGTCGCTGTaGGGGCATATTTGGTACTGC +
Preference number: 5 (lower is better)
Translates to: TAHGIMEQPQVPTCLYSVLVLSL*GHIWYC
Trigger: GCAGTACCAAATATGCCCCAACAGCGACAAGACCAA...GACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAATCAGTGTATGACGCGCCGTGGCCGTaGCTACCAAAACAGTCTGAG +
Preference number: 5 (lower is better)
Translates to: SSTASELLAFLSDVKSVYDAPWP*LPKQSE
Trigger: CTCAGACTGTTTTGGTAGCAACGGCCACGGCGCGTC...ATACACTGATTTAACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR CAA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCGGAGGAATATATTTATaGTCCCTAGTGTTGGGGCCA +
Preference number: 5 (lower is better)
Translates to: RTLQQHMELWNSHKSLHAGGIYL*SLVLGP
Trigger: TGGCCCCAACACTAGGGACAATAAATATATTCCTCC...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CAA 90 bp ATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACACCTTTGGAGACATCCTaGGGGGTCCTTCTGAAGACA +
Preference number: 5 (lower is better)
Translates to: MELWNSHKSLHASTRSKTPLETS*GVLLKT
Trigger: TGTCTTCAGAAGGACCCCCAAGGATGTCTCCAAAGG...TGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CAA 90 bp CAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGGCTTCACTTGGGGGATaGTGGGATACAAATTCTAGG +
Preference number: 5 (lower is better)
Translates to: QQHMELWNSHKSLHASTRASLGG*WDTNSR
Trigger: CCTAGAATTTGTATCCCACAATCCCCCAAGTGAAGC...CCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCAGCTTCACTTGGGGGATaGTGGGATACAAATTCTAGG +
Preference number: 5 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPASLGG*WDTNSR
Trigger: CCTAGAATTTGTATCCCACAATCCCCCAAGTGAAGC...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTGAGCAGCTGCTTCACTaGGGGGATTGTGGGATACAA +
Preference number: 5 (lower is better)
Translates to: RSKTSSTASELLAFLSDVEQLLH*GDCGIQ
Trigger: TTGTATCCCACAATCCCCCAAGTGAAGCAGCTGCTC...AACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCGTTCTGCCTCTGATCTaGAAGCCTGGAATCTTTTGC +
Preference number: 5 (lower is better)
Translates to: HASTRSKTSSTASELLAFVLPLI*KPGIFC
Trigger: GCAAAAGATTCCAGGCTTCAAGATCAGAGGCAGAAC...GAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCGAGAAAGAACGAGGGTaGAACTCCTTTGCATTGGGA +
Preference number: 5 (lower is better)
Translates to: HASTRSKTSSTASELLAFEKERG*NSFALG
Trigger: TCCCAATGCAAAGGAGTTCAACCCTCGTTCTTTCTC...GAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATACGGGATACATCATATaGGGTGCGAAGCACACAGGC +
Preference number: 5 (lower is better)
Translates to: WNYGTATSPYMPLLGPKHTGYII*GAKHTG
Trigger: GCCTGTGTGCTTCGCACCCAATATGATGTATCCCGT...ATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCTCTATATGTCTTGGCTaGGTTCACAGGCATGGGCGT +
Preference number: 5 (lower is better)
Translates to: CNSTWNYGTATSPYMPLLSICLG*VHRHGR
Trigger: ACGCCCATGCCTGTGAACCAAGCCAAGACATATAGA...GAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGGCTGTTGGGGCATATTaGGTACTTTACCTGCTCTAT +
Preference number: 5 (lower is better)
Translates to: HKSLHASTRSKTSSTASEAVGAY*VLYLLY
Trigger: ATAGAGCAGGTAAAGTACCAAATATGCCCCAACAGC...CTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CAA 90 bp GGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCTTGATGATGTTGGTCTaGTCGCTGTTGGGGCATATT +
Preference number: 5 (lower is better)
Translates to: GTCRTLQQHMELWNSHKSLMMLV*SLLGHI
Trigger: AATATGCCCCAACAGCGACAAGACCAACATCATCAA...GGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp AGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTTGATGATGTTGGTCTaGTCGCTGTTGGGGCATATT +
Preference number: 5 (lower is better)
Translates to: RTLQQHMELWNSHKSLHALMMLV*SLLGHI
Trigger: AATATGCCCCAACAGCGACAAGACCAACATCATCAA...GGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp ACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGGTGCTTTGATGATGTaGGTCTTGTCGCTGTTGGGG +
Preference number: 5 (lower is better)
Translates to: TRSKTSSTASELLAFLSDGALMM*VLSLLG
Trigger: CCCCAACAGCGACAAGACCAACATCATCAAAGCACC...ATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGTGCATCATGGTGCTTaGATGATGTTGGTCTTGTCG +
Preference number: 5 (lower is better)
Translates to: SLHASTRSKTSSTASELLVHHGA*MMLVLS
Trigger: CGACAAGACCAACATCATCAAAGCACCATGATGCAC...TAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp AGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTGGGCTTGTCTCCTTGTaGTATGGTAATTTGGGACAT +
Preference number: 5 (lower is better)
Translates to: SPYMPLLGPKHPPLQVSCGLVSL*YGNLGH
Trigger: ATGTCCCAAATTACCATACAACAAGGAGACAAGCCC...ACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS-3UTR CAA 90 bp ACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATAAGGGAAATGCGCTGTaGTCGAGACTGGAATGGGCT +
Preference number: 5 (lower is better)
Translates to: TRSKTSSTASELLAFLSDKGNAL*SRLEWA
Trigger: AGCCCATTCCAGTCTCGACAACAGCGCATTTCCCTT...ATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTTTATTTCTTCACGTTTaGGCCCCGAACTGGATTCTG +
Preference number: 5 (lower is better)
Translates to: WVLAGPCNSTWNYGTATSLFLHV*APNWIL
Trigger: CAGAATCCAGTTCGGGGCCAAAACGTGAAGAAATAA...ACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR CAA 90 bp ATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCTATATGTCTTGGCTaGGTTCACAGGCATGGGCGT +
Preference number: 5 (lower is better)
Translates to: MELWNSHKSLHASTRSKTSICLG*VHRHGR
Trigger: ACGCCCATGCCTGTGAACCAAGCCAAGACATATAGA...TGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp ACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATCCTGCTCTATATGTCTaGGCTTGGTTCACAGGCATG +
Preference number: 5 (lower is better)
Translates to: TRSKTSSTASELLAFLSDPALYV*AWFTGM
Trigger: CATGCCTGTGAACCAAGCCAAGACATATAGAGCAGG...ATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CAA 90 bp ATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACACCTGCTCTATATGTCTaGGCTTGGTTCACAGGCATG +
Preference number: 5 (lower is better)
Translates to: MELWNSHKSLHASTRSKTPALYV*AWFTGM
Trigger: CATGCCTGTGAACCAAGCCAAGACATATAGAGCAGG...TGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CAA 90 bp TCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTATTGGTCTTGTCGCTGTaGGGGCATATTTGGTACTTT +
Preference number: 5 (lower is better)
Translates to: SLHASTRSKTSSTASELLLVLSL*GHIWYF
Trigger: AAAGTACCAAATATGCCCCAACAGCGACAAGACCAA...TAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CAA 90 bp ACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTTGTTGTATGGTAATTaGGGACATGCATACATGGCG +
Preference number: 5 (lower is better)
Translates to: TSPYMPLLGPKHPPLQVSLLYGN*GHAYMA
Trigger: CGCCATGTATGCATGTCCCAAATTACCATACAACAA...GCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS-3UTR CAA 90 bp GGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCTTGTTGTATGGTAATTaGGGACATGCATACATGGCG +
Preference number: 5 (lower is better)
Translates to: GYLQDPATAHGIMEQPQVLLYGN*GHAYMA
Trigger: CGCCATGTATGCATGTCCCAAATTACCATACAACAA...GACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS-3UTR CAA 90 bp CCCTGCAACAGCACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTAGGGCTTGTCTCCTTGTaGTATGGTAATTTGGGACAT +
Preference number: 5 (lower is better)
Translates to: PCNSTWNYGTATSPYMPLGLVSL*YGNLGH
Trigger: ATGTCCCAAATTACCATACAACAAGGAGACAAGCCC...TAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS-3UTR CAA 90 bp GCTGGGTACTTGCAGGACCCTGCAACAGCACATGGAATTATGGAACAGCCACAAAGTAGAAAGAAGGGCTaGTCTCCTTGTTGTATGGTA +
Preference number: 5 (lower is better)
Translates to: AGYLQDPATAHGIMEQPQSRKKG*SPCCMV
Trigger: TACCATACAACAAGGAGACAAGCCCTTCTTTCTACT...TTGTGGCTGTTCCATAATTCCATGTGCTGTTGCAGGGTCCTGCAAGTACCCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS-3UTR CAA 90 bp TGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTAGTAGAAAGAAGGGCTaGTCTCCTTGTTGTATGGTA +
Preference number: 5 (lower is better)
Translates to: WNSHKSLHASTRSKTSSTSRKKG*SPCCMV
Trigger: TACCATACAACAAGGAGACAAGCCCTTCTTTCTACT...AGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS-3UTR CAA 90 bp CATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACACTGCTCTATATGTCTaGGCTTGGTTCACAGGCATG +
Preference number: 5 (lower is better)
Translates to: HGIMEQPQVPTCLYSVQNTALYV*AWFTGM
Trigger: CATGCCTGTGAACCAAGCCAAGACATATAGAGCAGT...GTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGAACCATCCTCACGTTaGCATAGATTCCATCAAAAG +
Preference number: 5 (lower is better)
Translates to: SLHASTRSKTSSTASELLEPSSR*HRFHQK
Trigger: CTTTTGATGGAATCTATGCAAACGTGAGGATGGTTC...TAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR CAA 90 bp AAAATCAATGAAGTTCTAGTTTTCTGTGCTTCCGGTTGGCAGAAGCAGGAGAAGTCTGTCATCCTTCTCTaGTTTGCAGGCTGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: KINEVLVFCASGWQKQEKSVILL*FAGWAG
Trigger: TCCAGCCCAGCCTGCAAACAAGAGAAGGATGACAGA...CTTCTCCTGCTTCTGCCAACCGGAAGCACAGAAAACTAGAACTTCATTGATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTGAGAAAGAACGAGGGTaGAACTCCTTTGCATTGGGA +
Preference number: 5 (lower is better)
Translates to: RSKTSSTASELLAFLSDVEKERG*NSFALG
Trigger: TCCCAATGCAAAGGAGTTCAACCCTCGTTCTTTCTC...AACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp CATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACGCTGTTGGGGCATATTaGGTACTTTACCTGCTCTAT +
Preference number: 5 (lower is better)
Translates to: HGIMEQPQVPTCLYSVQNAVGAY*VLYLLY
Trigger: ATAGAGCAGGTAAAGTACCAAATATGCCCCAACAGC...GTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CAA 90 bp ACATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAAGTGCATCATGGTGCTTaGATGATGTTGGTCTTGTCG +
Preference number: 5 (lower is better)
Translates to: TWNYGTATSPYMPLLGPKVHHGA*MMLVLS
Trigger: CGACAAGACCAACATCATCAAAGCACCATGATGCAC...TTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACATCCTCCAACGAAGTCTGAGCATTaGAACAAAACACTCTCCATT +
Preference number: 5 (lower is better)
Translates to: YGTATSPYMPLLGPKHPPTKSEH*NKTLSI
Trigger: AATGGAGAGTGTTTTGTTCAAATGCTCAGACTTCGT...TGGAGGATGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS-3UTR CAA 90 bp ATGGAATTATGGAACAGCCACAAGTCCCTACATGCCTCTACTCGGTCCAAAACAGGAGGAATATATTTATaGTCCCTAGTGTTGGGGCCA +
Preference number: 5 (lower is better)
Translates to: MELWNSHKSLHASTRSKTGGIYL*SLVLGP
Trigger: TGGCCCCAACACTAGGGACAATAAATATATTCCTCC...TGTTTTGGACCGAGTAGAGGCATGTAGGGACTTGTGGCTGTTCCATAATTCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS-3UTR CAA 90 bp CGGTCCAAAACATCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTTTGATGATGTTGGTCTaGTCGCTGTTGGGGCATATT +
Preference number: 5 (lower is better)
Translates to: RSKTSSTASELLAFLSDVLMMLV*SLLGHI
Trigger: AATATGCCCCAACAGCGACAAGACCAACATCATCAA...AACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGATGTTTTGGACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp AACAAAATCAATGAAGTTCTAGTTTTCTGTGCTTCCGGTTGGCAGAAGCAGGAGGCTTCACTTGGGGGATaGTGGGATACAAATTCTAGG +
Preference number: 5 (lower is better)
Translates to: NKINEVLVFCASGWQKQEASLGG*WDTNSR
Trigger: CCTAGAATTTGTATCCCACAATCCCCCAAGTGAAGC...CTCCTGCTTCTGCCAACCGGAAGCACAGAAAACTAGAACTTCATTGATTTTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp TCCTCCACTGCAAGTGAGCTGTTAGCATTCCTATCAGATGTTAAATCAGTGTATGTTCTGCCTCTGATCTaGAAGCCTGGAATCTTTTGC +
Preference number: 5 (lower is better)
Translates to: SSTASELLAFLSDVKSVYVLPLI*KPGIFC
Trigger: GCAAAAGATTCCAGGCTTCAAGATCAGAGGCAGAAC...ATACACTGATTTAACATCTGATAGGAATGCTAACAGCTCACTTGCAGTGGAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS-3UTR CAA 90 bp AAAATCAATGAAGTTCTAGTTTTCTGTGCTTCCGGTTGGCAGAAGCAGGAGAAGGCTGTTGGGGCATATTaGGTACTGCTCTATATGTCT +
Preference number: 5 (lower is better)
Translates to: KINEVLVFCASGWQKQEKAVGAY*VLLYMS
Trigger: AGACATATAGAGCAGTACCAAATATGCCCCAACAGC...CTTCTCCTGCTTCTGCCAACCGGAAGCACAGAAAACTAGAACTTCATTGATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162327.8
CDS TCA 72 bp GCGCGGGCGGCTGCGGCTGCGGCTTCAGCGACATGGTaGGCGGCCCATACACCGGCTCGCACGCCGGGCGGG +
Preference number: 6 (lower is better)
Translates to: ARAAAAAASATW*AAHTPARTPGG
Trigger: CCCGCCCGGCGTGCGAGCCGGTGTATGGGCCGCTCACCATGTCGCTGAAGCCGCAGCCGCAGCCGCCCGCGC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS CAA 90 bp ACACCGAGCAGCCGCCGGGAGCCGGGCCGGGACGCGCCGTGGCCGTaGCTACCAAAACAGTCTGAGGCGCAGGGTGGCGAGCGCGGCCCG +
Preference number: 6 (lower is better)
Translates to: TPSSRREPGRDAPWP*LPKQSEAQGGERGP
Trigger: CGGGCCGCGCTCGCCACCCTGCGCCTCAGACTGTTTTGGTAGCAACGGCCACGGCGCGTCCCGGCCCGGCTCCCGGCGGCTGCTCGGTGT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS GCA 72 bp GCCGCCGGGAGCCGGGCCGGGACGCGCCGTGGCCGTTaGTACCAAAACAGTCTGAGGCGCAGGGTGGCGAGC +
Preference number: 6 (lower is better)
Translates to: AAGSRAGTRRGR*YQNSLRRRVAS
Trigger: GCTCGCCACCCTGCGCCTCAGACTGTTTTGGTAGCAACGGCCACGGCGCGTCCCGGCCCGGCTCCCGGCGGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS CAA 72 bp AGCCGCCGGGAGCCGGGCCGGGACGCGCCGTGGCCGTaGCTACCAAAACAGTCTGAGGCGCAGGGTGGCGAG +
Preference number: 6 (lower is better)
Translates to: SRREPGRDAPWP*LPKQSEAQGGE
Trigger: CTCGCCACCCTGCGCCTCAGACTGTTTTGGTAGCAACGGCCACGGCGCGTCCCGGCCCGGCTCCCGGCGGCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051950.14
CDS CCA 72 bp CTGAGTGGAGTAAGCGGGCGGGGTGGCTACGATGGGTaGCCCTGCCGCGGAGGCTGGGTGCATCATGGTGCT +
Preference number: 6 (lower is better)
Translates to: LSGVSGRGGYDG*PCRGGWVHHGA
Trigger: AGCACCATGATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTAGCCACCCCGCCCGCTTACTCCACTCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp CGTACTGAGTGGAGTAAGCGGGCGGGGTGGCTACGATaGGTGGCCCTGCCGCGGAGGCTGGGTGCATCATGG +
Preference number: 6 (lower is better)
Translates to: RTEWSKRAGWLR*VALPRRLGASW
Trigger: CCATGATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTAGCCACCCCGCCCGCTTACTCCACTCAGTACG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp TGTAGGCAACGTACTGAGTGGAGTAAGCGGGCGGGGTaGCTACGATGGGTGGCCCTGCCGCGGAGGCTGGGT +
Preference number: 6 (lower is better)
Translates to: CRQRTEWSKRAG*LRWVALPRRLG
Trigger: ACCCAGCCTCCGCGGCAGGGCCACCCATCGTAGCCACCCCGCCCGCTTACTCCACTCAGTACGTTGCCTACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp GAAGCAGCTCTTGACGGCATGGAGCCTGGCCCAGGCTaGCCCATCCGTGGTGAGCTCTGTCTCCCACTTCCC +
Preference number: 6 (lower is better)
Translates to: EAALDGMEPGPG*PIRGELCLPLP
Trigger: GGGAAGTGGGAGACAGAGCTCACCACGGATGGGCCAGCCTGGGCCAGGCTCCATGCCGTCAAGAGCTGCTTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000225761.2
CDS CAA 72 bp AGGACTGGGTGCAGGGTGACTTCCACCATGCTGGCTTaGCTGCTGTCCGGTGGGAGTGGCCGAAGGCTGAGG +
Preference number: 6 (lower is better)
Translates to: RTGCRVTSTMLA*LLSGGSGRRLR
Trigger: CCTCAGCCTTCGGCCACTCCCACCGGACAGCAGCAAAGCCAGCATGGTGGAAGTCACCCTGCACCCAGTCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000051950.14
ENSMUST00000160462.2
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS CAA 90 bp GTGCTGAACAGGACTGGGTGCAGGGTGACTTCCACCATGCTGGCTTaGCTGCTGTCCGGTGGGAGTGGCCGAAGGCTGAGGATGGGGAGT +
Preference number: 6 (lower is better)
Translates to: VLNRTGCRVTSTMLA*LLSGGSGRRLRMGS
Trigger: ACTCCCCATCCTCAGCCTTCGGCCACTCCCACCGGACAGCAGCAAAGCCAGCATGGTGGAAGTCACCCTGCACCCAGTCCTGTTCAGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000051950.14
ENSMUST00000160462.2
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS TCA 72 bp AGGGGTGGCTGCCCGAGGTGGAAGAGAGTTGGGACCTaGCTGGTAGCGAGAAGGTGGGCGAGAGGAAGGAGA +
Preference number: 6 (lower is better)
Translates to: RGGCPRWKRVGT*LVARRWARGRR
Trigger: TCTCCTTCCTCTCGCCCACCTTCTCGCTACCAGTCAGGTCCCAACTCTCTTCCACCTCGGGCAGCCACCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000225761.2
CDS GCA 72 bp TGCTCTGTTGGATGCAGGGCTGGCAGGAGTCGGAGATaGGGCGGGAACAGGCATGGAAACGGCTTCTGCAGG +
Preference number: 6 (lower is better)
Translates to: CSVGCRAGRSRR*GGNRHGNGFCR
Trigger: CCTGCAGAAGCCGTTTCCATGCCTGTTCCCGCCGCATCTCCGACTCCTGCCAGCCCTGCATCCAACAGAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp GGACCACGTTCCCCCTGCAGGACTGGTCCTTGCCACTaGAGGAGCAGCTGCTTCACTTGGGGGATTGTGGGA +
Preference number: 6 (lower is better)
Translates to: GPRSPCRTGPCH*RSSCFTWGIVG
Trigger: TCCCACAATCCCCCAAGTGAAGCAGCTGCTCCTCCAGTGGCAAGGACCAGTCCTGCAGGGGGAACGTGGTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp CGGGGTGGCTACGATGGGTGGCCCTGCCGCGGAGGCTaGGTGCATCATGGTGCTTTGATGATGTTGGTCTTG +
Preference number: 6 (lower is better)
Translates to: RGGYDGWPCRGG*VHHGALMMLVL
Trigger: CAAGACCAACATCATCAAAGCACCATGATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTAGCCACCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp TGCCAGCCCCGCATGATAAATGGCCGACTGCTGCTGTaGACTGGCCAGATGAAGAGCCTGGGCAGCCTGGTG +
Preference number: 6 (lower is better)
Translates to: CQPRMINGRLLL*TGQMKSLGSLV
Trigger: CACCAGGCTGCCCAGGCTCTTCATCTGGCCAGTCCACAGCAGCAGTCGGCCATTTATCATGCGGGGCTGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS GCA 72 bp CGGAGATGCGGCGGGAACAGGCATGGAAACGGCTTCTaGAGGGATGATGCCAGCTTGGGGAGAAGCAAGCAC +
Preference number: 6 (lower is better)
Translates to: RRCGGNRHGNGF*RDDASLGRSKH
Trigger: GTGCTTGCTTCTCCCCAAGCTGGCATCATCCCTGCAGAAGCCGTTTCCATGCCTGTTCCCGCCGCATCTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 72 bp GGCAGCCTGGTGCTGATGGTGCTGAACAGGACTGGGTaGAGGGTGACTTCCACCATGCTGGCTTTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: GSLVLMVLNRTG*RVTSTMLALLL
Trigger: CAGCAGCAAAGCCAGCATGGTGGAAGTCACCCTGCACCCAGTCCTGTTCAGCACCATCAGCACCAGGCTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS CCA 72 bp CGATGGGTGGCCCTGCCGCGGAGGCTGGGTGCATCATaGTGCTTTGATGATGTTGGTCTTGTCGCTGTTGGG +
Preference number: 6 (lower is better)
Translates to: RWVALPRRLGAS*CFDDVGLVAVG
Trigger: CCCAACAGCGACAAGACCAACATCATCAAAGCACCATGATGCACCCAGCCTCCGCGGCAGGGCCACCCATCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp GCCCCGCATGATAAATGGCCGACTGCTGCTGTGGACTaGCCAGATGAAGAGCCTGGGCAGCCTGGTGCTGAT +
Preference number: 6 (lower is better)
Translates to: APHDKWPTAAVD*PDEEPGQPGAD
Trigger: ATCAGCACCAGGCTGCCCAGGCTCTTCATCTGGCCAGTCCACAGCAGCAGTCGGCCATTTATCATGCGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS CCA 72 bp GGTGGGCTTGTACTGAGGTACGTGGGCCATGTGGGGTaGGGTGGTGTATGCCGGCTGAACATGAGAAGGGTG +
Preference number: 6 (lower is better)
Translates to: GGLVLRYVGHVG*GGVCRLNMRRV
Trigger: CACCCTTCTCATGTTCAGCCGGCATACACCACCCCACCCCACATGGCCCACGTACCTCAGTACAAGCCCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS CCA 72 bp ACTTGCAGGACCCTGAGGTACGTGGGCCATGTGGGGTaGGGTGGTGTATGCCGGCTGAACATGAGAAGGGTG +
Preference number: 6 (lower is better)
Translates to: TCRTLRYVGHVG*GGVCRLNMRRV
Trigger: CACCCTTCTCATGTTCAGCCGGCATACACCACCCCACCCCACATGGCCCACGTACCTCAGGGTCCTGCAAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199864.2
CDS CAA 90 bp GGCGGGAACAGGCATGGAAACGGCTTCTGCAGGGATGATGCCAGCTaGGGGAGAAGCAAGCACAGGCCCGCTGGGAGAGTTTCCAATGCT +
Preference number: 6 (lower is better)
Translates to: GGNRHGNGFCRDDAS*GRSKHRPAGRVSNA
Trigger: AGCATTGGAAACTCTCCCAGCGGGCCTGTGCTTGCTTCTCCCCAAGCTGGCATCATCCCTGCAGAAGCCGTTTCCATGCCTGTTCCCGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CAA 90 bp GGGCGGCCTGGGGACCGCCGGGTGGCTGTGTCGTCATTAGCATCATaGGCGCATGGGCAGTTGGATGAGAAGGAACCATTCCTGACTGTA +
Preference number: 6 (lower is better)
Translates to: GRPGDRRVAVSSLAS*AHGQLDEKEPFLTV
Trigger: TACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAATGATGCTAATGACGACACAGCCACCCGGCGGTCCCCAGGCCGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS GCA 72 bp GCCCGGGCTCACTGGGACGGGATACATCATATTGGGTaGGAAGCACACAGGCTGAGTGTACACTGGAGCTGG +
Preference number: 6 (lower is better)
Translates to: ARAHWDGIHHIG*EAHRLSVHWSW
Trigger: CCAGCTCCAGTGTACACTCAGCCTGTGTGCTTCGCACCCAATATGATGTATCCCGTCCCAGTGAGCCCGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp GGCATGGAAACGGCTTCTGCAGGGATGATGCCAGCTTaGGGAGAAGCAAGCACAGGCCCGCTGGGAGAGTTT +
Preference number: 6 (lower is better)
Translates to: GMETASAGMMPA*GEASTGPLGEF
Trigger: AAACTCTCCCAGCGGGCCTGTGCTTGCTTCTCCCCAAGCTGGCATCATCCCTGCAGAAGCCGTTTCCATGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp GGGTGCGAAGCACACAGGCTGAGTGTACACTGGAGCTaGCTGCTGATGACCCACCATAGATGGGCTGGGTTG +
Preference number: 6 (lower is better)
Translates to: GCEAHRLSVHWS*LLMTHHRWAGL
Trigger: CAACCCAGCCCATCTATGGTGGGTCATCAGCAGCCAGCTCCAGTGTACACTCAGCCTGTGTGCTTCGCACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp GGTGGGAGTGGCCGAAGGCTGAGGATGGGGAGTATGTaGATGCAGGGCGGCATTAGGATGTGCATACTGCTG +
Preference number: 6 (lower is better)
Translates to: GGSGRRLRMGSM*MQGGIRMCILL
Trigger: CAGCAGTATGCACATCCTAATGCCGCCCTGCATCCACATACTCCCCATCCTCAGCCTTCGGCCACTCCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000051950.14
ENSMUST00000160462.2
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS CCA 72 bp CTTGAGCCAGAACTGAGGTACGTGGGCCATGTGGGGTaGGGTGGTGTATGCCGGCTGAACATGAGAAGGGTG +
Preference number: 6 (lower is better)
Translates to: LEPELRYVGHVG*GGVCRLNMRRV
Trigger: CACCCTTCTCATGTTCAGCCGGCATACACCACCCCACCCCACATGGCCCACGTACCTCAGTTCTGGCTCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160220.2
CDS CCA 72 bp TCGGTTCCTCCAGGGCAGCCTTACAACTGCTGTTGGTaGTGGGCTTGTACTGAGGTACGTGGGCCATGTGGG +
Preference number: 6 (lower is better)
Translates to: SVPPGQPYNCCW*WACTEVRGPCG
Trigger: CCCACATGGCCCACGTACCTCAGTACAAGCCCACCACCAACAGCAGTTGTAAGGCTGCCCTGGAGGAACCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS TCA 72 bp CCACTAGACATGGAGCCTCTCCCAGCAGAGACTCTGTaGTTCCGAGGGTGGCGCTGTGCCTTTGGAGACATC +
Preference number: 6 (lower is better)
Translates to: PLDMEPLPAETL*FRGWRCAFGDI
Trigger: GATGTCTCCAAAGGCACAGCGCCACCCTCGGAATCACAGAGTCTCTGCTGGGAGAGGCTCCATGTCTAGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
CDS TCA 72 bp TGTGGATGCAGGGCGGCATTAGGATGTGCATACTGCTaGGCGAGGGAGCCGGTGGAAACATACATGGCGTGC +
Preference number: 6 (lower is better)
Translates to: CGCRAALGCAYC*AREPVETYMAC
Trigger: GCACGCCATGTATGTTTCCACCGGCTCCCTCGCTCAGCAGTATGCACATCCTAATGCCGCCCTGCATCCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 72 bp AAGCAAGCACAGGCCCGCTGGGAGAGTTTCCAATGCTaGTCTGCCTGGGAGACCTGGGTCTGTGAGTTTTGG +
Preference number: 6 (lower is better)
Translates to: KQAQARWESFQC*SAWETWVCEFW
Trigger: CCAAAACTCACAGACCCAGGTCTCCCAGGCAGAGCAGCATTGGAAACTCTCCCAGCGGGCCTGTGCTTGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 72 bp TTTTGCCTCAATAGATGGGGTCAGTGCTCTGTTGGATaGAGGGCTGGCAGGAGTCGGAGATGCGGCGGGAAC +
Preference number: 6 (lower is better)
Translates to: FCLNRWGQCSVG*RAGRSRRCGGN
Trigger: GTTCCCGCCGCATCTCCGACTCCTGCCAGCCCTGCATCCAACAGAGCACTGACCCCATCTATTGAGGCAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 72 bp ATGGGGAGTATGTGGATGCAGGGCGGCATTAGGATGTaGATACTGCTGAGCGAGGGAGCCGGTGGAAATGGC +
Preference number: 6 (lower is better)
Translates to: MGSMWMQGGIRM*ILLSEGAGGNG
Trigger: GCCATTTCCACCGGCTCCCTCGCTCAGCAGTATGCACATCCTAATGCCGCCCTGCATCCACATACTCCCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000160462.2
ENSMUST00000161159.8
CDS CCA 72 bp GTACGCCCGGGCTCACTGGGACGGGATACATCATATTaGGTGCGAAGCACACAGGCTGAGTGTACACTGGAG +
Preference number: 6 (lower is better)
Translates to: VRPGSLGRDTSY*VRSTQAECTLE
Trigger: CTCCAGTGTACACTCAGCCTGTGTGCTTCGCACCCAATATGATGTATCCCGTCCCAGTGAGCCCGGGCGTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp TGGAAGGTGGTGTTGGTGCCAGCCCCGCATGATAAATaGCCGACTGCTGCTGTGGACTGGCCAGATGAAGAG +
Preference number: 6 (lower is better)
Translates to: WKVVLVPAPHDK*PTAAVDWPDEE
Trigger: CTCTTCATCTGGCCAGTCCACAGCAGCAGTCGGCCATTTATCATGCGGGGCTGGCACCAACACCACCTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS CAA 72 bp GGGGACCGCCGGGTGGCTGTGTCGTCATTAGCATCATaGGCGCATGGGCAGTTGGATGAGAAGGAACCATTC +
Preference number: 6 (lower is better)
Translates to: GDRRVAVSSLAS*AHGQLDEKEPF
Trigger: GAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAATGATGCTAATGACGACACAGCCACCCGGCGGTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS CAA 90 bp TACGATGGGTGGCCCTGCCGCGGAGGCTGGGTGCATCATGGTGCTTaGATGATGTTGGTCTTGTCGCTGTTGGGGCATATTTGGTACTGC +
Preference number: 6 (lower is better)
Translates to: YDGWPCRGGWVHHGA*MMLVLSLLGHIWYC
Trigger: GCAGTACCAAATATGCCCCAACAGCGACAAGACCAACATCATCAAAGCACCATGATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162327.8
CDS GCA 72 bp TCATGGAAGGTGGTGTTGGTGCTGAACAGGACTGGGTaGAGGGTGACTTCCACCATGCTGGCTTTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: SWKVVLVLNRTG*RVTSTMLALLL
Trigger: CAGCAGCAAAGCCAGCATGGTGGAAGTCACCCTGCACCCAGTCCTGTTCAGCACCAACACCACCTTCCATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160462.2
CDS GCA 72 bp TTTGGCCTTTCGGTTCCTCCAGGGCAGCCTTACAACTaGTGTTGGTGGTGGGCTTGTACTGAGGTACGTGGG +
Preference number: 6 (lower is better)
Translates to: FGLSVPPGQPYN*CWWWACTEVRG
Trigger: CCCACGTACCTCAGTACAAGCCCACCACCAACAGCAGTTGTAAGGCTGCCCTGGAGGAACCGAAAGGCCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS CCA 72 bp CTTTCGGTTCCTCCAGGGCAGCCTTACAACTGCTGTTaGTGGTGGGCTTGTACTGAGGTACGTGGGCCATGT +
Preference number: 6 (lower is better)
Translates to: LSVPPGQPYNCC*WWACTEVRGPC
Trigger: ACATGGCCCACGTACCTCAGTACAAGCCCACCACCAACAGCAGTTGTAAGGCTGCCCTGGAGGAACCGAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000161159.8
CDS CAA 72 bp CAGAGACTCTGTGATTCCGAGGGTGGCGCTGTGCCTTaGGAGACATCCTTGGGGGTCCTTCTGAAGACATGC +
Preference number: 6 (lower is better)
Translates to: QRLCDSEGGAVP*ETSLGVLLKTC
Trigger: GCATGTCTTCAGAAGGACCCCCAAGGATGTCTCCAAAGGCACAGCGCCACCCTCGGAATCACAGAGTCTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS CAA 72 bp GAATCTTTTGCCTCAATAGATGGGGTCAGTGCTCTGTaGGATGCAGGGCTGGCAGGAGTCGGAGATGCGGCG +
Preference number: 6 (lower is better)
Translates to: ESFASIDGVSAL*DAGLAGVGDAA
Trigger: CGCCGCATCTCCGACTCCTGCCAGCCCTGCATCCAACAGAGCACTGACCCCATCTATTGAGGCAAAAGATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CAA 90 bp GTCATCCTTCTCTTGTTTGCAGGCTGGGCTGGAAGTCTGCACCCCTaGGGATGTGACCTCAGGCCCCCTCTTGTGCTCTGCATTACTAAG +
Preference number: 6 (lower is better)
Translates to: VILLLFAGWAGSLHP*GCDLRPPLVLCITK
Trigger: CTTAGTAATGCAGAGCACAAGAGGGGGCCTGAGGTCACATCCCAAGGGGTGCAGACTTCCAGCCCAGCCTGCAAACAAGAGAAGGATGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CAA 90 bp GGTGGGCTTGTACTGAAGGGTGCGTCATATAAGGGAAATGCGCTGTaGTCGAGACTGGAATGGGCTGTAGTGCACTTTGAGCGAGGGCGG +
Preference number: 6 (lower is better)
Translates to: GGLVLKGASYKGNAL*SRLEWAVVHFERGR
Trigger: CCGCCCTCGCTCAAAGTGCACTACAGCCCATTCCAGTCTCGACAACAGCGCATTTCCCTTATATGACGCACCCTTCAGTACAAGCCCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS TCA 72 bp CACCATAGATGGGCTGGGTTGTGCTTGAGGCCGAGGTaGCGTTGGGGTAGTAGAAGGCTTTGGCTGAGAGAA +
Preference number: 6 (lower is better)
Translates to: HHRWAGLCLRPR*RWGSRRLWLRE
Trigger: TTCTCTCAGCCAAAGCCTTCTACTACCCCAACGTCACCTCGGCCTCAAGCACAACCCAGCCCATCTATGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS GCA 72 bp ATGGGGAGTATGTGGATGCAGGGCGGCATTAGGATGTaGATACTGCTGAGCGAGGGAGCCGGTGGAAACATA +
Preference number: 6 (lower is better)
Translates to: MGSMWMQGGIRM*ILLSEGAGGNI
Trigger: TATGTTTCCACCGGCTCCCTCGCTCAGCAGTATGCACATCCTAATGCCGCCCTGCATCCACATACTCCCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp CATATTGGGTGCGAAGCACACAGGCTGAGTGTACACTaGAGCTGGCTGCTGATGACCCACCATAGATGGGCT +
Preference number: 6 (lower is better)
Translates to: HIGCEAHRLSVH*SWLLMTHHRWA
Trigger: AGCCCATCTATGGTGGGTCATCAGCAGCCAGCTCCAGTGTACACTCAGCCTGTGTGCTTCGCACCCAATATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp CTGTGTATTAGAGGCAGGTGTCATGGAAGGTGGTGTTaGTGCCAGCCCCGCATGATAAATGGCCGACTGCTG +
Preference number: 6 (lower is better)
Translates to: LCIRGRCHGRWC*CQPRMINGRLL
Trigger: CAGCAGTCGGCCATTTATCATGCGGGGCTGGCACCAACACCACCTTCCATGACACCTGCCTCTAATACACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS CCA 72 bp TCATATAAGGGAAATGCGCTGTTGTCGAGACTGGAATaGGCTGTAGTGCACTTTGAGCGAGGGCGGCCTGGG +
Preference number: 6 (lower is better)
Translates to: SYKGNALLSRLE*AVVHFERGRPG
Trigger: CCCAGGCCGCCCTCGCTCAAAGTGCACTACAGCCCATTCCAGTCTCGACAACAGCGCATTTCCCTTATATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS CAA 90 bp TCTGCATTACTAAGCATGGAAGGGGAGATGCTAGGGCTGTTGGTCTaGCTGCTGCCACTGGTACAGTTGCTGCTGCTGCTGCTGCTGTCA +
Preference number: 6 (lower is better)
Translates to: SALLSMEGEMLGLLV*LLPLVQLLLLLLLS
Trigger: TGACAGCAGCAGCAGCAGCAGCAACTGTACCAGTGGCAGCAGCAAGACCAACAGCCCTAGCATCTCCCCTTCCATGCTTAGTAATGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CAA 90 bp TGGCCCTGCCGCGGAGGCTGGGTGCATCATGGTGCTTTGATGATGTaGGTCTTGTCGCTGTTGGGGCATATTTGGTACTTTACCTGCTCT +
Preference number: 6 (lower is better)
Translates to: WPCRGGWVHHGALMM*VLSLLGHIWYFTCS
Trigger: AGAGCAGGTAAAGTACCAAATATGCCCCAACAGCGACAAGACCAACATCATCAAAGCACCATGATGCACCCAGCCTCCGCGGCAGGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS CAA 90 bp TACGATGGGTGGCCCTGCCGCGGAGGCTGGGTGCATCATGGTGCTTaGATGATGTTGGTCTTGTCGCTGTTGGGGCATATTTGGTACTTT +
Preference number: 6 (lower is better)
Translates to: YDGWPCRGGWVHHGA*MMLVLSLLGHIWYF
Trigger: AAAGTACCAAATATGCCCCAACAGCGACAAGACCAACATCATCAAAGCACCATGATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS CAA 90 bp CGCCGGGTGGCTGTGTCGTCATTAGCATCATTGGCGCATGGGCAGTaGGATGAGAAGGAACCATTCCTGACTGTACATGAGCCTGAGGTA +
Preference number: 6 (lower is better)
Translates to: RRVAVSSLASLAHGQ*DEKEPFLTVHEPEV
Trigger: TACCTCAGGCTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAATGATGCTAATGACGACACAGCCACCCGGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS GCA 72 bp AAGCCTGGAATCTTTTGCCTCAATAGATGGGGTCAGTaGTCTGTTGGATGCAGGGCTGGCAGGAGTCGGAGA +
Preference number: 6 (lower is better)
Translates to: KPGIFCLNRWGQ*SVGCRAGRSRR
Trigger: TCTCCGACTCCTGCCAGCCCTGCATCCAACAGAGCACTGACCCCATCTATTGAGGCAAAAGATTCCAGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp GCCACTGGAGGAGCAGCTGCTTCACTTGGGGGATTGTaGGATACAAATTCTAGGCCACTAGACATGGAGCCT +
Preference number: 6 (lower is better)
Translates to: ATGGAAASLGGL*DTNSRPLDMEP
Trigger: AGGCTCCATGTCTAGTGGCCTAGAATTTGTATCCCACAATCCCCCAAGTGAAGCAGCTGCTCCTCCAGTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp AGAGACTCTGTGATTCCGAGGGTGGCGCTGTGCCTTTaGAGACATCCTTGGGGGTCCTCCATTAACTACTCT +
Preference number: 6 (lower is better)
Translates to: RDSVIPRVALCL*RHPWGSSINYS
Trigger: AGAGTAGTTAATGGAGGACCCCCAAGGATGTCTCCAAAGGCACAGCGCCACCCTCGGAATCACAGAGTCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160821.6
CDS CAA 72 bp CTAGGGCTGTTGGTCTTGCTGCTGCCACTGGTACAGTaGCTGCTGCTGCTGCTGCTGTCAATGAAACTATCC +
Preference number: 6 (lower is better)
Translates to: LGLLVLLLPLVQ*LLLLLLSMKLS
Trigger: GGATAGTTTCATTGACAGCAGCAGCAGCAGCAGCAACTGTACCAGTGGCAGCAGCAAGACCAACAGCCCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CAA 72 bp GCATTACTAAGCATGGAAGGGGAGATGCTAGGGCTGTaGGTCTTGCTGCTGCCACTGGTACAGTTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: ALLSMEGEMLGL*VLLLPLVQLLL
Trigger: CAGCAGCAACTGTACCAGTGGCAGCAGCAAGACCAACAGCCCTAGCATCTCCCCTTCCATGCTTAGTAATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CAA 72 bp CGCGGAGGCTGGGTGCATCATGGTGCTTTGATGATGTaGGTCTTGTCGCTGTTGGGGCATATTTGGTACTGC +
Preference number: 6 (lower is better)
Translates to: RGGWVHHGALMM*VLSLLGHIWYC
Trigger: GCAGTACCAAATATGCCCCAACAGCGACAAGACCAACATCATCAAAGCACCATGATGCACCCAGCCTCCGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162327.8
CDS CAA 90 bp GGGGAGATGCTAGGGCTGTTGGTCTTGCTGCTGCCACTGGTACAGTaGCTGCTGCTGCTGCTGCTGTCAATGAAACTATCCTTAGCACTT +
Preference number: 6 (lower is better)
Translates to: GEMLGLLVLLLPLVQ*LLLLLLSMKLSLAL
Trigger: AAGTGCTAAGGATAGTTTCATTGACAGCAGCAGCAGCAGCAGCAACTGTACCAGTGGCAGCAGCAAGACCAACAGCCCTAGCATCTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CAA 90 bp TGGCCCTGCCGCGGAGGCTGGGTGCATCATGGTGCTTTGATGATGTaGGTCTTGTCGCTGTTGGGGCATATTTGGTACTGCTCTATATGT +
Preference number: 6 (lower is better)
Translates to: WPCRGGWVHHGALMM*VLSLLGHIWYCSIC
Trigger: ACATATAGAGCAGTACCAAATATGCCCCAACAGCGACAAGACCAACATCATCAAAGCACCATGATGCACCCAGCCTCCGCGGCAGGGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162327.8
CDS GCA 72 bp GGAGGAATATATTTATTGTCCCTAGTGTTGGGGCCATaGCCCTCCCGGTCACTGCAGTTTCTCTGGACTGCT +
Preference number: 6 (lower is better)
Translates to: GGIYLLSLVLGP*PSRSLQFLWTA
Trigger: AGCAGTCCAGAGAAACTGCAGTGACCGGGAGGGGCATGGCCCCAACACTAGGGACAATAAATATATTCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000225761.2
CDS CCA 72 bp GGCGATGGCCAGGGAACACCTCCATTAACTACTCTTTaGTCTGAGCCAGCGTTCGGGTTGAAATCTGAAGTG +
Preference number: 6 (lower is better)
Translates to: GDGQGTPPLTTL*SEPAFGLKSEV
Trigger: CACTTCAGATTTCAACCCGAACGCTGGCTCAGACCAAAGAGTAGTTAATGGAGGTGTTCCCTGGCCATCGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000225761.2
CDS CCA 72 bp CTGATCTTGAAGCCTGGAATCTTTTGCCTCAATAGATaGGGTCAGTGCTCTGTTGGATGCAGGGCTGGCAGG +
Preference number: 6 (lower is better)
Translates to: LILKPGIFCLNR*GQCSVGCRAGR
Trigger: CCTGCCAGCCCTGCATCCAACAGAGCACTGACCCCATCTATTGAGGCAAAAGATTCCAGGCTTCAAGATCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CCA 72 bp ACTGATAATGCGGCACATGCTGGACCAAAGGCTGATTaGGAAACTGCTGAGGGCTGTAGGCAACGTACTGAG +
Preference number: 6 (lower is better)
Translates to: TDNAAHAGPKAD*ETAEGCRQRTE
Trigger: CTCAGTACGTTGCCTACAGCCCTCAGCAGTTTCCCAATCAGCCTTTGGTCCAGCATGTGCCGCATTATCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000162327.8
CDS CAA 90 bp TGCCGCGGAGGCTGGGTGCATCATGGTGCTTTGATGATGTTGGTCTaGTCGCTGTTGGGGCATATTTGGTACTGCTCTATATGTCTTGGC +
Preference number: 6 (lower is better)
Translates to: CRGGWVHHGALMMLV*SLLGHIWYCSICLG
Trigger: GCCAAGACATATAGAGCAGTACCAAATATGCCCCAACAGCGACAAGACCAACATCATCAAAGCACCATGATGCACCCAGCCTCCGCGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162327.8
CDS CCA 72 bp GGAGACATCCTTGGGGGTCCTCCATTAACTACTCTTTaGTCTGAGCCAGCGTTCGGGTTGAAATCTGAAGTG +
Preference number: 6 (lower is better)
Translates to: GDILGGPPLTTL*SEPAFGLKSEV
Trigger: CACTTCAGATTTCAACCCGAACGCTGGCTCAGACCAAAGAGTAGTTAATGGAGGACCCCCAAGGATGTCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160821.6
CDS CAA 72 bp CTTTGTCCAGGAGGAATATATTTATTGTCCCTAGTGTaGGGGCCATGCCCCTCCCGGTCACTGCAGTTTCTC +
Preference number: 6 (lower is better)
Translates to: LCPGGIYLLSLV*GPCPSRSLQFL
Trigger: GAGAAACTGCAGTGACCGGGAGGGGCATGGCCCCAACACTAGGGACAATAAATATATTCCTCCTGGACAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000225761.2
CDS CAA 72 bp CGCGGAGGCTGGGTGCATCATGGTGCTTTGATGATGTaGGTCTTGTCGCTGTTGGGGCATATTTGGTACTTT +
Preference number: 6 (lower is better)
Translates to: RGGWVHHGALMM*VLSLLGHIWYF
Trigger: AAAGTACCAAATATGCCCCAACAGCGACAAGACCAACATCATCAAAGCACCATGATGCACCCAGCCTCCGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS CAA 90 bp TCTCTGTTTCTTTGTCCAGGAGGAATATATTTATTGTCCCTAGTGTaGGGGCCATGCCCCTCCCGGTCACTGCAGTTTCTCTGGACTGCT +
Preference number: 6 (lower is better)
Translates to: SLFLCPGGIYLLSLV*GPCPSRSLQFLWTA
Trigger: AGCAGTCCAGAGAAACTGCAGTGACCGGGAGGGGCATGGCCCCAACACTAGGGACAATAAATATATTCCTCCTGGACAAAGAAACAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000225761.2
CDS CAA 90 bp TGCCGCGGAGGCTGGGTGCATCATGGTGCTTTGATGATGTTGGTCTaGTCGCTGTTGGGGCATATTTGGTACTTTACCTGCTCTATATGT +
Preference number: 6 (lower is better)
Translates to: CRGGWVHHGALMMLV*SLLGHIWYFTCSIC
Trigger: ACATATAGAGCAGGTAAAGTACCAAATATGCCCCAACAGCGACAAGACCAACATCATCAAAGCACCATGATGCACCCAGCCTCCGCGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS CAA 90 bp ACCAGGCTGAGCATGTGCTGGTGGTGCCATCATCCTGGCATTACCTaGTATGACAGGACTGTACACATGAGGATGCTGAGACTGATAATG +
Preference number: 6 (lower is better)
Translates to: TRLSMCWWCHHPGIT*YDRTVHMRMLRLIM
Trigger: CATTATCAGTCTCAGCATCCTCATGTGTACAGTCCTGTCATACAAGGTAATGCCAGGATGATGGCACCACCAGCACATGCTCAGCCTGGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS CAA 90 bp GCTGAGCGAGGGAGCCGGTGGAAATGGCAAAGTAGAAAGAAGGGCTaGTCTCCTTGTTGTATGGTAATTTGGGACATGCATACATGGCGT +
Preference number: 6 (lower is better)
Translates to: AERGSRWKWQSRKKG*SPCCMVIWDMHTWR
Trigger: ACGCCATGTATGCATGTCCCAAATTACCATACAACAAGGAGACAAGCCCTTCTTTCTACTTTGCCATTTCCACCGGCTCCCTCGCTCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS TCA 72 bp GTGCTGGTGGTGCCATCATCCTGGCATTACCTTGTATaGCAGGACTGTACACATGAGGATGCTGAGACTGAT +
Preference number: 6 (lower is better)
Translates to: VLVVPSSWHYLV*QDCTHEDAETD
Trigger: ATCAGTCTCAGCATCCTCATGTGTACAGTCCTGTCATACAAGGTAATGCCAGGATGATGGCACCACCAGCAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS CAA 72 bp AGCATGTGCTGGTGGTGCCATCATCCTGGCATTACCTaGTATGACAGGACTGTACACATGAGGATGCTGAGA +
Preference number: 6 (lower is better)
Translates to: SMCWWCHHPGIT*YDRTVHMRMLR
Trigger: TCTCAGCATCCTCATGTGTACAGTCCTGTCATACAAGGTAATGCCAGGATGATGGCACCACCAGCACATGCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000161159.8
ENSMUST00000162327.8
CDS CAA 72 bp GCTGTGTCGTCATTAGCATCATTGGCGCATGGGCAGTaGGATGAGAAGGAACCATTCCTGACTGTACATGAG +
Preference number: 6 (lower is better)
Translates to: AVSSLASLAHGQ*DEKEPFLTVHE
Trigger: CTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAATGATGCTAATGACGACACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS CAA 72 bp GTACTGAAGGGTGCGTCATATAAGGGAAATGCGCTGTaGTCGAGACTGGAATGGGCTGTAGTGCACTTTGAG +
Preference number: 6 (lower is better)
Translates to: VLKGASYKGNAL*SRLEWAVVHFE
Trigger: CTCAAAGTGCACTACAGCCCATTCCAGTCTCGACAACAGCGCATTTCCCTTATATGACGCACCCTTCAGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000162327.8
CDS CCA 72 bp AGAAAGAAGGGCTTGTCTCCTTGTTGTATGGTAATTTaGGACATGCATACATGGCGTGCGTCTGCTCGTGAG +
Preference number: 6 (lower is better)
Translates to: RKKGLSPCCMVI*DMHTWRASARE
Trigger: CTCACGAGCAGACGCACGCCATGTATGCATGTCCCAAATTACCATACAACAAGGAGACAAGCCCTTCTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS CAA 72 bp GGGAGCCGGTGGAAATGGCAAAGTAGAAAGAAGGGCTaGTCTCCTTGTTGTATGGTAATTTGGGACATGCAT +
Preference number: 6 (lower is better)
Translates to: GSRWKWQSRKKG*SPCCMVIWDMH
Trigger: ATGCATGTCCCAAATTACCATACAACAAGGAGACAAGCCCTTCTTTCTACTTTGCCATTTCCACCGGCTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161159.8
CDS CAA 72 bp TTGGGGCATATTTGGTACTGCTCTATATGTCTTGGCTaGGTTCACAGGCATGGGCGTCATAGGTATTGGGTA +
Preference number: 6 (lower is better)
Translates to: LGHIWYCSICLG*VHRHGRHRYWV
Trigger: TACCCAATACCTATGACGCCCATGCCTGTGAACCAAGCCAAGACATATAGAGCAGTACCAAATATGCCCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162327.8
CDS TCA 72 bp CGGTCATCATTCTCAAGGGCGACACGAGCTTTGTACTaGGCACTGGATTCAATTTCTTCTGCTAACTGGTTT +
Preference number: 6 (lower is better)
Translates to: RSSFSRATRALY*ALDSISSANWF
Trigger: AAACCAGTTAGCAGAAGAAATTGAATCCAGTGCTCAGTACAAAGCTCGTGTCGCCCTTGAGAATGATGACCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000051950.14
ENSMUST00000160821.6
ENSMUST00000161064.8
ENSMUST00000225761.2
CDS CAA 72 bp TGGGGCATATTTGGTACTTTACCTGCTCTATATGTCTaGGCTTGGTTCACAGGCATGGGCGTCATAGGTATT +
Preference number: 6 (lower is better)
Translates to: WGIFGTLPALYV*AWFTGMGVIGI
Trigger: AATACCTATGACGCCCATGCCTGTGAACCAAGCCAAGACATATAGAGCAGGTAAAGTACCAAATATGCCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS CAA 72 bp CATCATGGTGCTTTGATGATGTTGGTCTTGTCGCTGTaGGGGCATATTTGGTACTGCTCTATATGTCTTGGC +
Preference number: 6 (lower is better)
Translates to: HHGALMMLVLSL*GHIWYCSICLG
Trigger: GCCAAGACATATAGAGCAGTACCAAATATGCCCCAACAGCGACAAGACCAACATCATCAAAGCACCATGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162327.8
CDS CAA 72 bp CATATTTGGTACTTTACCTGCTCTATATGTCTTGGCTaGGTTCACAGGCATGGGCGTCATAGGTATTGGGTA +
Preference number: 6 (lower is better)
Translates to: HIWYFTCSICLG*VHRHGRHRYWV
Trigger: TACCCAATACCTATGACGCCCATGCCTGTGAACCAAGCCAAGACATATAGAGCAGGTAAAGTACCAAATATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS CAA 72 bp CATCATGGTGCTTTGATGATGTTGGTCTTGTCGCTGTaGGGGCATATTTGGTACTTTACCTGCTCTATATGT +
Preference number: 6 (lower is better)
Translates to: HHGALMMLVLSL*GHIWYFTCSIC
Trigger: ACATATAGAGCAGGTAAAGTACCAAATATGCCCCAACAGCGACAAGACCAACATCATCAAAGCACCATGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
CDS CAA 90 bp GCTAACTGGTTTGCCCTTGCCTCCCGTTTAAGAAATTCTTCTGAGTaGTCCCTTTCTAAAGGAACCGTATATGAAGATAAACTGCTATCA +
Preference number: 6 (lower is better)
Translates to: ANWFALASRLRNSSE*SLSKGTVYEDKLLS
Trigger: TGATAGCAGTTTATCTTCATATACGGTTCCTTTAGAAAGGGACAACTCAGAAGAATTTCTTAAACGGGAGGCAAGGGCAAACCAGTTAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000225761.2
CDS CAA 72 bp TTTGCCCTTGCCTCCCGTTTAAGAAATTCTTCTGAGTaGTCCCTTTCTAAAGGAACCGTATATGAAGATAAA +
Preference number: 6 (lower is better)
Translates to: FALASRLRNSSE*SLSKGTVYEDK
Trigger: TTTATCTTCATATACGGTTCCTTTAGAAAGGGACAACTCAGAAGAATTTCTTAAACGGGAGGCAAGGGCAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051950.14
ENSMUST00000161064.8
ENSMUST00000225761.2
CDS CAA 72 bp GTATCTTTAAACTGTACCACAACGAAGTCTGAGCATTaGAACAAAACACTCTCCATTATTTCTTCACGTTTT +
Preference number: 6 (lower is better)
Translates to: VSLNCTTTKSEH*NKTLSIISSRF
Trigger: AAAACGTGAAGAAATAATGGAGAGTGTTTTGTTCAAATGCTCAGACTTCGTTGTGGTACAGTTTAAAGATAC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051950.14
ENSMUST00000225761.2