Pregenerated sensors for ATXN10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016541Ensembl transcript IDs: ENSMUST00000163242.3
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTaGAGAGATGAGAGGTCCGTGAGATGGAATCTGAATGTGTTCATA | + |
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Preference number: 1 (lower is better) Translates to: PSSVPYMSNTCDFIH*RDERSVRWNLNVFI Trigger: TATGAACACATTCAGATTCCATCTCACGGACCTCTCATCTCTGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| 3UTR GCA 72 bp | GTACCCTACATGTCCAATACTTGTGATTTCATACACTaGAGAGATGAGAGGTCCGTGAGATGGAATCTGAAT | + |
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Preference number: 3 (lower is better) Translates to: VPYMSNTCDFIH*RDERSVRWNLN Trigger: ATTCAGATTCCATCTCACGGACCTCTCATCTCTGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CCA 90 bp | AGGCTCCCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTGCAAAGGCCTCCAGGTCCTaGATGGGTGCGGGCACCATG | + |
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Preference number: 4 (lower is better) Translates to: RLPHLYPTCPILVISYTAKASRS*MGAGTM Trigger: CATGGTGCCCGCACCCATCCAGGACCTGGAGGCCTT...TGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGGGAGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR GCA 90 bp | CCCACAGAGACGTTTATTACTACAACAGTAAGCACAATGTATATGACGGGAAAGCAGGTCCTGGATGGGTaGGGGCACCATGATGCCCGA | + |
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Preference number: 4 (lower is better) Translates to: PTETFITTTVSTMYMTGKQVLDG*GHHDAR Trigger: TCGGGCATCATGGTGCCCGCACCCATCCAGGACCTG...CTTTCCCGTCATATACATTGTGCTTACTGTTGTAGTAATAAACGTCTCTGTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR GCA 90 bp | GCCCACAGAGACGTTTATTACTACAACAGTAAGCACAATGTATATGACGGGAAAGTTTCCCGGTTACGCTaGTCCTTGAAGAGCGCCGTG | + |
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Preference number: 4 (lower is better) Translates to: AHRDVYYYNSKHNVYDGKVSRLR*SLKSAV Trigger: CACGGCGCTCTTCAAGGAGCAGCGTAACCGGGAAAC...TTTCCCGTCATATACATTGTGCTTACTGTTGTAGTAATAAACGTCTCTGTGGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR TCA 90 bp | ACTTGTGATTTCATACACTGCAGAGATGAGAGGTCCGTGAGATGGAATCTGAATTCCTTATCCTCGGTGTaGGGCTCTGAGGTCAACTTC | + |
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Preference number: 4 (lower is better) Translates to: TCDFIHCRDERSVRWNLNSLSSV*GSEVNF Trigger: GAAGTTGACCTCAGAGCCTCACACCGAGGATAAGGA...ATTCAGATTCCATCTCACGGACCTCTCATCTCTGCAGTGTATGAAATCACAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR GCA 90 bp | TCTACCCAGAGGGACAAAGGTGAGGCAGACAGTAACACTTACTGCAAAGAAATATTCGTGAGGCAACGTTaGCTAAAAACTGCAGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: STQRDKGEADSNTYCKEIFVRQR*LKTAGH Trigger: GTGGCCTGCAGTTTTTAGGCAACGTTGCCTCACGAA...TATTTCTTTGCAGTAAGTGTTACTGTCTGCCTCACCTTTGTCCCTCTGGGTAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CCA 90 bp | CCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTGCAGAGATGAGTTCTGGGAAGGCGTaGACCCAAACAATGGACTGG | + |
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Preference number: 4 (lower is better) Translates to: PHLYPTCPILVISYTAEMSSGKA*TQTMDW Trigger: CCAGTCCATTGTTTGGGTCCACGCCTTCCCAGAACT...CATCTCTGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR TCA 90 bp | AGGCTCCCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTGCACCTCCATCTTGGCAATaGCATCTTGGTTTTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: RLPHLYPTCPILVISYTAPPSWQ*HLGFGC Trigger: ACAGCCAAAACCAAGATGTCATTGCCAAGATGGAGG...TGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGGGAGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR TCA 90 bp | AGGATTAGGAGGCTCCCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATCGTATCCAGGTTCCTaGTGGAATTCTGATTCACAG | + |
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Preference number: 4 (lower is better) Translates to: RIRRLPHLYPTCPILVISSYPGS*WNSDSQ Trigger: CTGTGAATCAGAATTCCATCAGGAACCTGGATACGA...TGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGGGAGCCTCCTAATCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR TCA 90 bp | CCCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTGCAGAGATGCCGGGTGCTTTTGGTaGGCTTCTATGACGTTAATT | + |
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Preference number: 4 (lower is better) Translates to: PSSVPYMSNTCDFIHCRDAGCFW*ASMTLI Trigger: AATTAACGTCATAGAAGCTCACCAAAAGCACCCGGC...ATCTCTGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR TCA 90 bp | ACTTGTGATTTCATACACTGCAGAGATGAGAGGTCCGTGAGATGGAATCTGAATGAGAGTCTGAGGGACTaGAGATGTTCGTGCTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: TCDFIHCRDERSVRWNLNESLRD*RCSCFL Trigger: AAGAAAGCACGAACATCTTCAGTCCCTCAGACTCTC...ATTCAGATTCCATCTCACGGACCTCTCATCTCTGCAGTGTATGAAATCACAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR TCA 90 bp | ACTTGTGATTTCATACACTGCAGAGATGAGAGGTCCGTGAGATGGAATCTGAATGGCTGTTGTCTTCAGTaGGATTTCGCACAGCATACA | + |
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Preference number: 4 (lower is better) Translates to: TCDFIHCRDERSVRWNLNGCCLQ*DFAQHT Trigger: TGTATGCTGTGCGAAATCTCACTGAAGACAACAGCC...ATTCAGATTCCATCTCACGGACCTCTCATCTCTGCAGTGTATGAAATCACAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR GCA 90 bp | CCCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTGCAGAGATCCAGGATCAGAGGAATaGCATCCAGCTCATTCACTT | + |
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Preference number: 4 (lower is better) Translates to: PSSVPYMSNTCDFIHCRDPGSEE*HPAHSL Trigger: AAGTGAATGAGCTGGATGGCATTCCTCTGATCCTGG...ATCTCTGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CCA 90 bp | CACAGAGACGTTTATTACTACAACAGTAAGCACAATGTATATGACGGGAAAGCGAGACATGAAGAGTTCTaGGAAGGCGTGGACCCAAAC | + |
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Preference number: 4 (lower is better) Translates to: HRDVYYYNSKHNVYDGKARHEEF*EGVDPN Trigger: GTTTGGGTCCACGCCTTCCCAGAACTCTTCATGTCT...CGCTTTCCCGTCATATACATTGTGCTTACTGTTGTAGTAATAAACGTCTCTGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR TCA 90 bp | CCCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTGCAGAGATGCACTGATCCATAAATaGGTTTGCAATCAACTCGGC | + |
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Preference number: 4 (lower is better) Translates to: PSSVPYMSNTCDFIHCRDALIHK*VCNQLG Trigger: GCCGAGTTGATTGCAAACTCATTTATGGATCAGTGC...ATCTCTGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR GCA 90 bp | CCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTGCAGAGATGACGTTGCCTAAAAACTaGAGGCCACATCGAAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: PHLYPTCPILVISYTAEMTLPKN*RPHRKA Trigger: AGCTTTTCGATGTGGCCTGCAGTTTTTAGGCAACGT...CATCTCTGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CCA 90 bp | AGGCTCCCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTGCAACCCAAACAATGGACTaGGATTCTTCATTTCGTGAG | + |
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Preference number: 4 (lower is better) Translates to: RLPHLYPTCPILVISYTATQTMD*DSSFRE Trigger: CTCACGAAATGAAGAATCCCAGTCCATTGTTTGGGT...TGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGGGAGCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CCA 90 bp | GAGGCTCCCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTGCTTGGCAATGACATCTTaGTTTTGGCTGTTGTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: EAPSSVPYMSNTCDFIHCLAMTS*FWLLSS Trigger: TGAAGACAACAGCCAAAACCAAGATGTCATTGCCAA...GCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGGGAGCCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR TCA 90 bp | TCCAATACTTGTGATTTCATACACTGCAGAGATGAGAGGTCCGTGAGATGGAATGCCAGCTCAACAGCATaGGTAGACTTCTTTAAGATA | + |
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Preference number: 4 (lower is better) Translates to: SNTCDFIHCRDERSVRWNASSTA*VDFFKI Trigger: TATCTTAAAGAAGTCTACTCATGCTGTTGAGCTGGC...ATTCCATCTCACGGACCTCTCATCTCTGCAGTGTATGAAATCACAAGTATTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR TCA 90 bp | GCCCACAGAGACGTTTATTACTACAACAGTAAGCACAATGTATATGACGGGAAAATCAGACGGATGAGATaGGACTTAAAGCCTTCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: AHRDVYYYNSKHNVYDGKIRRMR*DLKPSV Trigger: GACTGAAGGCTTTAAGTCTCATCTCATCCGTCTGAT...TTTCCCGTCATATACATTGTGCTTACTGTTGTAGTAATAAACGTCTCTGTGGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR GCA 90 bp | GCCCACAGAGACGTTTATTACTACAACAGTAAGCACAATGTATATGACGGGAAACATTCAGTGATTAGCTaGAGACTGGAAGCCAGATGT | + |
|
Preference number: 4 (lower is better) Translates to: AHRDVYYYNSKHNVYDGKHSVIS*RLEARC Trigger: ACATCTGGCTTCCAGTCTGCAGCTAATCACTGAATG...TTTCCCGTCATATACATTGTGCTTACTGTTGTAGTAATAAACGTCTCTGTGGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CCA 90 bp | CCCACAGAGACGTTTATTACTACAACAGTAAGCACAATGTATATGACGGGAAAGAGTGTGATCCTTTCCTaGTTGCTGAGTTTGCCATAC | + |
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Preference number: 4 (lower is better) Translates to: PTETFITTTVSTMYMTGKSVILS*LLSLPY Trigger: GTATGGCAAACTCAGCAACCAGGAAAGGATCACACT...CTTTCCCGTCATATACATTGTGCTTACTGTTGTAGTAATAAACGTCTCTGTGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR TCA 90 bp | CCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTGCAGAGATGTTTCAGAAAGTGGTCTaGAATAATCAAGAACGGCCA | + |
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Preference number: 4 (lower is better) Translates to: PHLYPTCPILVISYTAEMFQKVV*NNQERP Trigger: TGGCCGTTCTTGATTATTTCAGACCACTTTCTGAAA...CATCTCTGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CCA 90 bp | TCTACCCAGAGGGACAAAGGTGAGGCAGACAGTAACACTTACTGCAAAGAAATAAACAATCTTTTTGTCTaGATGGTTCAAGCAAGACAT | + |
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Preference number: 4 (lower is better) Translates to: STQRDKGEADSNTYCKEINNLFV*MVQARH Trigger: ATGTCTTGCTTGAACCATCCAGACAAAAAGATTGTT...TATTTCTTTGCAGTAAGTGTTACTGTCTGCCTCACCTTTGTCCCTCTGGGTAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR TCA 90 bp | CACAGAGACGTTTATTACTACAACAGTAAGCACAATGTATATGACGGGAAAGCGTTCCTGATGGAATTCTaGTTCACAGAACACTCTATA | + |
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Preference number: 4 (lower is better) Translates to: HRDVYYYNSKHNVYDGKAFLMEF*FTEHSI Trigger: TATAGAGTGTTCTGTGAATCAGAATTCCATCAGGAA...CGCTTTCCCGTCATATACATTGTGCTTACTGTTGTAGTAATAAACGTCTCTGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CCA 90 bp | TGCTCCTTGAAGAGCGCCGTGAGCGCGCGCAAGGCCTCCAGGTCCTaGATGGGTGCGGGCACCATGATGCCCGACAGCCGGGAGGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: CSLKSAVSARKASRS*MGAGTMMPDSREGG Trigger: GCCACCCTCCCGGCTGTCGGGCATCATGGTGCCCGCACCCATCCAGGACCTGGAGGCCTTGCGCGCGCTCACGGCGCTCTTCAAGGAGCA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CAA 90 bp | CTCCCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTGCAGAGCGGTTACGCTGCTCCTaGAAGAGCGCCGTGAGCGCG | + |
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Preference number: 5 (lower is better) Translates to: LPHLYPTCPILVISYTAERLRCS*KSAVSA Trigger: CGCGCTCACGGCGCTCTTCAAGGAGCAGCGTAACCG...CTCTGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS GCA 90 bp | TGGCTGTTGTCTTCAGTGAGATTTCGCACAGCATACACCACCCACTaGATCATAAAGGGGTTGTTGTCATCGATGTTGCTGCTGTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: WLLSSVRFRTAYTTH*IIKGLLSSMLLLSR Trigger: CCTGGACAGCAGCAACATCGATGACAACAACCCCTTTATGATGCAGTGGGTGGTGTATGCTGTGCGAAATCTCACTGAAGACAACAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS TCA 90 bp | AGATGTTCCACTTGGGAGGGATCCCTGCAGGCCAGCTCAACAGCATaGGTAGACTTCTTTAAGATATCCAGGACTCTCTGGAAGATCGTT | + |
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Preference number: 5 (lower is better) Translates to: RCSTWEGSLQASSTA*VDFFKISRTLWKIV Trigger: AACGATCTTCCAGAGAGTCCTGGATATCTTAAAGAAGTCTACTCATGCTGTTGAGCTGGCCTGCAGGGATCCCTCCCAAGTGGAACATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS GCA 90 bp | TCTATACAAGCATTCCGAAGACATCTGAAGCATTCAGTGATTAGCTaGAGACTGGAAGCCAGATGTTCCACTTGGGAGGGATCCCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: SIQAFRRHLKHSVIS*RLEARCSTWEGSLQ Trigger: CTGCAGGGATCCCTCCCAAGTGGAACATCTGGCTTCCAGTCTGCAGCTAATCACTGAATGCTTCAGATGTCTTCGGAATGCTTGTATAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS GCA 90 bp | AACTCGGCATGGCGCACAAAGATAGAGATGTCATCCTTTGTCAGCTaGTCCTCACCCACTAGCTTGGCTATCACTATGTCTAACAGTGTG | + |
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Preference number: 5 (lower is better) Translates to: NSAWRTKIEMSSFVS*SSPTSLAITMSNSV Trigger: CACACTGTTAGACATAGTGATAGCCAAGCTAGTGGGTGAGGAGCAGCTGACAAAGGATGACATCTCTATCTTTGTGCGCCATGCCGAGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CCA 90 bp | CAAGACATGAAGAGTTCTGGGAAGGCGTGGACCCAAACAATGGACTaGGATTCTTCATTTCGTGAGGCAACGTTGCCTAAAAACTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: QDMKSSGKAWTQTMD*DSSFREATLPKNCR Trigger: CCTGCAGTTTTTAGGCAACGTTGCCTCACGAAATGAAGAATCCCAGTCCATTGTTTGGGTCCACGCCTTCCCAGAACTCTTCATGTCTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CCA 90 bp | CCCACTAGCTTGGCTATCACTATGTCTAACAGTGTGATCCTTTCCTaGTTGCTGAGTTTGCCATACATAGCTTCCACCAGTTCCGGGCTT | + |
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Preference number: 5 (lower is better) Translates to: PTSLAITMSNSVILS*LLSLPYIASTSSGL Trigger: AAGCCCGGAACTGGTGGAAGCTATGTATGGCAAACTCAGCAACCAGGAAAGGATCACACTGTTAGACATAGTGATAGCCAAGCTAGTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS GCA 90 bp | ATGGACTGGGATTCTTCATTTCGTGAGGCAACGTTGCCTAAAAACTaGAGGCCACATCGAAAAGCTGTCAACAAGGAGTCTTGTTCCACC | + |
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Preference number: 5 (lower is better) Translates to: MDWDSSFREATLPKN*RPHRKAVNKESCST Trigger: GGTGGAACAAGACTCCTTGTTGACAGCTTTTCGATGTGGCCTGCAGTTTTTAGGCAACGTTGCCTCACGAAATGAAGAATCCCAGTCCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS GCA 90 bp | GGACCCAAACAATGGACTGGGATTCTTCATTTCGTGAGGCAACGTTaGCTAAAAACTGCAGGCCACATCGAAAAGCTGTCAACAAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: GPKQWTGILHFVRQR*LKTAGHIEKLSTRS Trigger: ACTCCTTGTTGACAGCTTTTCGATGTGGCCTGCAGTTTTTAGGCAACGTTGCCTCACGAAATGAAGAATCCCAGTCCATTGTTTGGGTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS GCA 90 bp | ATTTCAAAGCCCATTTTCTTCAGTAGGGATGCGTCTGCCAAGCCCTaGTCCTCCATCTTGGCAATGACATCTTGGTTTTGGCTGTTGTCT | + |
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Preference number: 5 (lower is better) Translates to: ISKPIFFSRDASAKP*SSILAMTSWFWLLS Trigger: AGACAACAGCCAAAACCAAGATGTCATTGCCAAGATGGAGGAGCAGGGCTTGGCAGACGCATCCCTACTGAAGAAAATGGGCTTTGAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS TCA 90 bp | GAGTCTGAGGGACTGAAGATGTTCGTGCTTTCTTTTCCAACTTCATaGATCACTCGTAAAACATCAATCACGCGTTCCATCAGGCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: ESEGLKMFVLSFPTS*ITRKTSITRSIRPG Trigger: CCCTGGCCTGATGGAACGCGTGATTGATGTTTTACGAGTGATTCATGAAGTTGGAAAAGAAAGCACGAACATCTTCAGTCCCTCAGACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CAA 90 bp | AGGATTAGGAGGCTCCCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATCCTGGTTGCTGAGTTaGCCATACATAGCTTCCACC | + |
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Preference number: 5 (lower is better) Translates to: RIRRLPHLYPTCPILVISSWLLS*PYIAST Trigger: GGTGGAAGCTATGTATGGCAAACTCAGCAACCAGGA...TGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGGGAGCCTCCTAATCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CAA 90 bp | CTCCCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTGCAGAGCCGAGAAGCTCAGTGTaGGACGTCATTTCACACAAG | + |
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Preference number: 5 (lower is better) Translates to: LPHLYPTCPILVISYTAEPRSSV*DVISHK Trigger: CTTGTGTGAAATGACGTCCAACACTGAGCTTCTCGG...CTCTGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS TCA 90 bp | TCTGAAATAATCAAGAACGGCCACTCTGACGCCGGGTGCTTTTGGTaGGCTTCTATGACGTTAATTGCAATATTGAGGTTCTCTTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: SEIIKNGHSDAGCFW*ASMTLIAILRFSSR Trigger: CCTGGAAGAGAACCTCAATATTGCAATTAACGTCATAGAAGCTCACCAAAAGCACCCGGCGTCAGAGTGGCCGTTCTTGATTATTTCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CCA 90 bp | AACAATCTTTTTGTCTGGATGGTTCAAGCAAGACATGAAGAGTTCTaGGAAGGCGTGGACCCAAACAATGGACTGGGATTCTTCATTTCG | + |
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Preference number: 5 (lower is better) Translates to: NNLFVWMVQARHEEF*EGVDPNNGLGFFIS Trigger: CGAAATGAAGAATCCCAGTCCATTGTTTGGGTCCACGCCTTCCCAGAACTCTTCATGTCTTGCTTGAACCATCCAGACAAAAAGATTGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CAA 90 bp | CCCACAGAGACGTTTATTACTACAACAGTAAGCACAATGTATATGACGGGAAAGTTTCGTGAGGCAACGTaGCCTAAAAACTGCAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: PTETFITTTVSTMYMTGKFREAT*PKNCRP Trigger: TGGCCTGCAGTTTTTAGGCAACGTTGCCTCACGAAA...CTTTCCCGTCATATACATTGTGCTTACTGTTGTAGTAATAAACGTCTCTGTGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CAA 90 bp | TCTACCCAGAGGGACAAAGGTGAGGCAGACAGTAACACTTACTGCAAAGAAATAGTGATCCTTTCCTGGTaGCTGAGTTTGCCATACATA | + |
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Preference number: 5 (lower is better) Translates to: STQRDKGEADSNTYCKEIVILSW*LSLPYI Trigger: TATGTATGGCAAACTCAGCAACCAGGAAAGGATCAC...TATTTCTTTGCAGTAAGTGTTACTGTCTGCCTCACCTTTGTCCCTCTGGGTAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS TCA 90 bp | TCATGTGTTCGATGTCACCCTCTGCTTTTAGAGAGTCTGAGGGACTaGAGATGTTCGTGCTTTCTTTTCCAACTTCATGAATCACTCGTA | + |
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Preference number: 5 (lower is better) Translates to: SCVRCHPLLLESLRD*RCSCFLFQLHESLV Trigger: TACGAGTGATTCATGAAGTTGGAAAAGAAAGCACGAACATCTTCAGTCCCTCAGACTCTCTAAAAGCAGAGGGTGACATCGAACACATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CAA 90 bp | CCCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTGCAGAGATCTTGGCAATGACATCTaGGTTTTGGCTGTTGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: PSSVPYMSNTCDFIHCRDLGNDI*VLAVVF Trigger: GAAGACAACAGCCAAAACCAAGATGTCATTGCCAAG...ATCTCTGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CAA 90 bp | GCCCACAGAGACGTTTATTACTACAACAGTAAGCACAATGTATATGACGGGAAATGCATCATAAAGGGGTaGTTGTCATCGATGTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: AHRDVYYYNSKHNVYDGKCIIKG*LSSMLL Trigger: CAGCAACATCGATGACAACAACCCCTTTATGATGCA...TTTCCCGTCATATACATTGTGCTTACTGTTGTAGTAATAAACGTCTCTGTGGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CAA 90 bp | CCTCATCTGTACCCTACATGTCCAATACTTGTGATTTCATACACTGCAGAGATGACGTTAATTGCAATATaGAGGTTCTCTTCCAGGTCT | + |
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Preference number: 5 (lower is better) Translates to: PHLYPTCPILVISYTAEMTLIAI*RFSSRS Trigger: AGACCTGGAAGAGAACCTCAATATTGCAATTAACGT...CATCTCTGCAGTGTATGAAATCACAAGTATTGGACATGTAGGGTACAGATGAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CAA 90 bp | TCTACCCAGAGGGACAAAGGTGAGGCAGACAGTAACACTTACTGCAAAGAAATATCCAGCTCATTCACTTaGTCTTGGTTTTCTTTATTC | + |
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Preference number: 5 (lower is better) Translates to: STQRDKGEADSNTYCKEISSSFT*SWFSLF Trigger: GAATAAAGAAAACCAAGACAAAGTGAATGAGCTGGA...TATTTCTTTGCAGTAAGTGTTACTGTCTGCCTCACCTTTGTCCCTCTGGGTAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS-3UTR CAA 90 bp | ACAGAGACGTTTATTACTACAACAGTAAGCACAATGTATATGACGGGAAAGCGAAATGACATCTTGGTTTaGGCTGTTGTCTTCAGTGAG | + |
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Preference number: 5 (lower is better) Translates to: TETFITTTVSTMYMTGKRNDILV*AVVFSE Trigger: CTCACTGAAGACAACAGCCAAAACCAAGATGTCATT...TCGCTTTCCCGTCATATACATTGTGCTTACTGTTGTAGTAATAAACGTCTCTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS TCA 72 bp | GCAAGGCCTCCAGGTCCTGGATGGGTGCGGGCACCATaGTGCCCGACAGCCGGGAGGGTGGCATCCTGGGCG | + |
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Preference number: 6 (lower is better) Translates to: ARPPGPGWVRAP*CPTAGRVASWA Trigger: CGCCCAGGATGCCACCCTCCCGGCTGTCGGGCATCATGGTGCCCGCACCCATCCAGGACCTGGAGGCCTTGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CCA 72 bp | AAGAGCGCCGTGAGCGCGCGCAAGGCCTCCAGGTCCTaGATGGGTGCGGGCACCATGATGCCCGACAGCCGG | + |
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Preference number: 6 (lower is better) Translates to: KSAVSARKASRS*MGAGTMMPDSR Trigger: CCGGCTGTCGGGCATCATGGTGCCCGCACCCATCCAGGACCTGGAGGCCTTGCGCGCGCTCACGGCGCTCTT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 72 bp | ATCGTTCTGGGTGCTGTTTCCCGGTTACGCTGCTCCTaGAAGAGCGCCGTGAGCGCGCGCAAGGCCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: IVLGAVSRLRCS*KSAVSARKASR Trigger: CCTGGAGGCCTTGCGCGCGCTCACGGCGCTCTTCAAGGAGCAGCGTAACCGGGAAACAGCACCCAGAACGAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS GCA 72 bp | TGGAAGATCGTTCTGGGTGCTGTTTCCCGGTTACGCTaGTCCTTGAAGAGCGCCGTGAGCGCGCGCAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: WKIVLGAVSRLR*SLKSAVSARKA Trigger: GGCCTTGCGCGCGCTCACGGCGCTCTTCAAGGAGCAGCGTAACCGGGAAACAGCACCCAGAACGATCTTCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CCA 72 bp | CAGGGAAAACCTGCAGGTAGCCGAGAAGCTCAGTGTTaGACGTCATTTCACACAAGACATCCAGGAGCCGAA | + |
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Preference number: 6 (lower is better) Translates to: QGKPAGSREAQC*TSFHTRHPGAE Trigger: TTCGGCTCCTGGATGTCTTGTGTGAAATGACGTCCAACACTGAGCTTCTCGGCTACCTGCAGGTTTTCCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 90 bp | GTCTGCCAAGCCCTGCTCCTCCATCTTGGCAATGACATCTTGGTTTaGGCTGTTGTCTTCAGTGAGATTTCGCACAGCATACACCACCCA | + |
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Preference number: 6 (lower is better) Translates to: VCQALLLHLGNDILV*AVVFSEISHSIHHP Trigger: TGGGTGGTGTATGCTGTGCGAAATCTCACTGAAGACAACAGCCAAAACCAAGATGTCATTGCCAAGATGGAGGAGCAGGGCTTGGCAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS TCA 72 bp | ACTTGGGAGGGATCCCTGCAGGCCAGCTCAACAGCATaGGTAGACTTCTTTAAGATATCCAGGACTCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: TWEGSLQASSTA*VDFFKISRTLW Trigger: CCAGAGAGTCCTGGATATCTTAAAGAAGTCTACTCATGCTGTTGAGCTGGCCTGCAGGGATCCCTCCCAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 72 bp | ACCCACTGCATCATAAAGGGGTTGTTGTCATCGATGTaGCTGCTGTCCAGGATCAGAGGAATGCCATCCAGC | + |
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Preference number: 6 (lower is better) Translates to: THCIIKGLLSSM*LLSRIRGMPSS Trigger: GCTGGATGGCATTCCTCTGATCCTGGACAGCAGCAACATCGATGACAACAACCCCTTTATGATGCAGTGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 72 bp | CGCACAGCATACACCACCCACTGCATCATAAAGGGGTaGTTGTCATCGATGTTGCTGCTGTCCAGGATCAGA | + |
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Preference number: 6 (lower is better) Translates to: RTAYTTHCIIKG*LSSMLLLSRIR Trigger: TCTGATCCTGGACAGCAGCAACATCGATGACAACAACCCCTTTATGATGCAGTGGGTGGTGTATGCTGTGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 90 bp | GCATACACCACCCACTGCATCATAAAGGGGTTGTTGTCATCGATGTaGCTGCTGTCCAGGATCAGAGGAATGCCATCCAGCTCATTCACT | + |
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Preference number: 6 (lower is better) Translates to: AYTTHCIIKGLLSSM*LLSRIRGMPSSSFT Trigger: AGTGAATGAGCTGGATGGCATTCCTCTGATCCTGGACAGCAGCAACATCGATGACAACAACCCCTTTATGATGCAGTGGGTGGTGTATGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 90 bp | AGATTTCGCACAGCATACACCACCCACTGCATCATAAAGGGGTTGTaGTCATCGATGTTGCTGCTGTCCAGGATCAGAGGAATGCCATCC | + |
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Preference number: 6 (lower is better) Translates to: RFRTAYTTHCIIKGL*SSMLLLSRIRGMPS Trigger: GGATGGCATTCCTCTGATCCTGGACAGCAGCAACATCGATGACAACAACCCCTTTATGATGCAGTGGGTGGTGTATGCTGTGCGAAATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 90 bp | GTGAGATTTCGCACAGCATACACCACCCACTGCATCATAAAGGGGTaGTTGTCATCGATGTTGCTGCTGTCCAGGATCAGAGGAATGCCA | + |
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Preference number: 6 (lower is better) Translates to: VRFRTAYTTHCIIKG*LSSMLLLSRIRGMP Trigger: TGGCATTCCTCTGATCCTGGACAGCAGCAACATCGATGACAACAACCCCTTTATGATGCAGTGGGTGGTGTATGCTGTGCGAAATCTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS GCA 72 bp | GCATTCCGAAGACATCTGAAGCATTCAGTGATTAGCTaGAGACTGGAAGCCAGATGTTCCACTTGGGAGGGA | + |
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Preference number: 6 (lower is better) Translates to: AFRRHLKHSVIS*RLEARCSTWEG Trigger: TCCCTCCCAAGTGGAACATCTGGCTTCCAGTCTGCAGCTAATCACTGAATGCTTCAGATGTCTTCGGAATGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 72 bp | ACAGCATACACCACCCACTGCATCATAAAGGGGTTGTaGTCATCGATGTTGCTGCTGTCCAGGATCAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: TAYTTHCIIKGL*SSMLLLSRIRG Trigger: TCCTCTGATCCTGGACAGCAGCAACATCGATGACAACAACCCCTTTATGATGCAGTGGGTGGTGTATGCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS GCA 72 bp | TGGCGCACAAAGATAGAGATGTCATCCTTTGTCAGCTaGTCCTCACCCACTAGCTTGGCTATCACTATGTCT | + |
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Preference number: 6 (lower is better) Translates to: WRTKIEMSSFVS*SSPTSLAITMS Trigger: AGACATAGTGATAGCCAAGCTAGTGGGTGAGGAGCAGCTGACAAAGGATGACATCTCTATCTTTGTGCGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CCA 72 bp | AAGAGTTCTGGGAAGGCGTGGACCCAAACAATGGACTaGGATTCTTCATTTCGTGAGGCAACGTTGCCTAAA | + |
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Preference number: 6 (lower is better) Translates to: KSSGKAWTQTMD*DSSFREATLPK Trigger: TTTAGGCAACGTTGCCTCACGAAATGAAGAATCCCAGTCCATTGTTTGGGTCCACGCCTTCCCAGAACTCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 90 bp | TGGACCCAAACAATGGACTGGGATTCTTCATTTCGTGAGGCAACGTaGCCTAAAAACTGCAGGCCACATCGAAAAGCTGTCAACAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: WTQTMDWDSSFREAT*PKNCRPHRKAVNKE Trigger: CTCCTTGTTGACAGCTTTTCGATGTGGCCTGCAGTTTTTAGGCAACGTTGCCTCACGAAATGAAGAATCCCAGTCCATTGTTTGGGTCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 90 bp | GCTATCACTATGTCTAACAGTGTGATCCTTTCCTGGTTGCTGAGTTaGCCATACATAGCTTCCACCAGTTCCGGGCTTTTCAGAAAGTGG | + |
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Preference number: 6 (lower is better) Translates to: AITMSNSVILSWLLS*PYIASTSSGLFRKW Trigger: CCACTTTCTGAAAAGCCCGGAACTGGTGGAAGCTATGTATGGCAAACTCAGCAACCAGGAAAGGATCACACTGTTAGACATAGTGATAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 90 bp | ACTAGCTTGGCTATCACTATGTCTAACAGTGTGATCCTTTCCTGGTaGCTGAGTTTGCCATACATAGCTTCCACCAGTTCCGGGCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: TSLAITMSNSVILSW*LSLPYIASTSSGLF Trigger: GAAAAGCCCGGAACTGGTGGAAGCTATGTATGGCAAACTCAGCAACCAGGAAAGGATCACACTGTTAGACATAGTGATAGCCAAGCTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 90 bp | AAGATAGAGATGTCATCCTTTGTCAGCTGCTCCTCACCCACTAGCTaGGCTATCACTATGTCTAACAGTGTGATCCTTTCCTGGTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: KIEMSSFVSCSSPTS*AITMSNSVILSWLL Trigger: CAGCAACCAGGAAAGGATCACACTGTTAGACATAGTGATAGCCAAGCTAGTGGGTGAGGAGCAGCTGACAAAGGATGACATCTCTATCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS TCA 72 bp | ATCAAGAACGGCCACTCTGACGCCGGGTGCTTTTGGTaGGCTTCTATGACGTTAATTGCAATATTGAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: IKNGHSDAGCFW*ASMTLIAILRF Trigger: GAACCTCAATATTGCAATTAACGTCATAGAAGCTCACCAAAAGCACCCGGCGTCAGAGTGGCCGTTCTTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS TCA 72 bp | GGTCAACTTCAGCACGTTCCTGCACTGATCCATAAATaGGTTTGCAATCAACTCGGCATGGCGCACAAAGAT | + |
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Preference number: 6 (lower is better) Translates to: GQLQHVPALIHK*VCNQLGMAHKD Trigger: ATCTTTGTGCGCCATGCCGAGTTGATTGCAAACTCATTTATGGATCAGTGCAGGAACGTGCTGAAGTTGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS GCA 72 bp | CAATGGACTGGGATTCTTCATTTCGTGAGGCAACGTTaGCTAAAAACTGCAGGCCACATCGAAAAGCTGTCA | + |
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Preference number: 6 (lower is better) Translates to: QWTGILHFVRQR*LKTAGHIEKLS Trigger: TGACAGCTTTTCGATGTGGCCTGCAGTTTTTAGGCAACGTTGCCTCACGAAATGAAGAATCCCAGTCCATTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 72 bp | ACAATGGACTGGGATTCTTCATTTCGTGAGGCAACGTaGCCTAAAAACTGCAGGCCACATCGAAAAGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: TMDWDSSFREAT*PKNCRPHRKAV Trigger: GACAGCTTTTCGATGTGGCCTGCAGTTTTTAGGCAACGTTGCCTCACGAAATGAAGAATCCCAGTCCATTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 72 bp | ATGTCTAACAGTGTGATCCTTTCCTGGTTGCTGAGTTaGCCATACATAGCTTCCACCAGTTCCGGGCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: MSNSVILSWLLS*PYIASTSSGLF Trigger: GAAAAGCCCGGAACTGGTGGAAGCTATGTATGGCAAACTCAGCAACCAGGAAAGGATCACACTGTTAGACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 72 bp | ATGTCATCCTTTGTCAGCTGCTCCTCACCCACTAGCTaGGCTATCACTATGTCTAACAGTGTGATCCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: MSSFVSCSSPTS*AITMSNSVILS Trigger: GGAAAGGATCACACTGTTAGACATAGTGATAGCCAAGCTAGTGGGTGAGGAGCAGCTGACAAAGGATGACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS TCA 72 bp | CAACAATCTTTTTGTCTGGATGGTTCAAGCAAGACATaGAGAGTTCTGGGAAGGCGTGGACCCAAACAATGG | + |
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Preference number: 6 (lower is better) Translates to: QQSFCLDGSSKT*RVLGRRGPKQW Trigger: CCATTGTTTGGGTCCACGCCTTCCCAGAACTCTTCATGTCTTGCTTGAACCATCCAGACAAAAAGATTGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS GCA 72 bp | TGTCATCGATGTTGCTGCTGTCCAGGATCAGAGGAATaGCATCCAGCTCATTCACTTTGTCTTGGTTTTCTT | + |
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Preference number: 6 (lower is better) Translates to: CHRCCCCPGSEE*HPAHSLCLGFL Trigger: AAGAAAACCAAGACAAAGTGAATGAGCTGGATGGCATTCCTCTGATCCTGGACAGCAGCAACATCGATGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 72 bp | GCTATCACTATGTCTAACAGTGTGATCCTTTCCTGGTaGCTGAGTTTGCCATACATAGCTTCCACCAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: AITMSNSVILSW*LSLPYIASTSS Trigger: GGAACTGGTGGAAGCTATGTATGGCAAACTCAGCAACCAGGAAAGGATCACACTGTTAGACATAGTGATAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS TCA 72 bp | CGATGTCACCCTCTGCTTTTAGAGAGTCTGAGGGACTaGAGATGTTCGTGCTTTCTTTTCCAACTTCATGAA | + |
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Preference number: 6 (lower is better) Translates to: RCHPLLLESLRD*RCSCFLFQLHE Trigger: TTCATGAAGTTGGAAAAGAAAGCACGAACATCTTCAGTCCCTCAGACTCTCTAAAAGCAGAGGGTGACATCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CCA 72 bp | TTGGCTATCACTATGTCTAACAGTGTGATCCTTTCCTaGTTGCTGAGTTTGCCATACATAGCTTCCACCAGT | + |
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Preference number: 6 (lower is better) Translates to: LAITMSNSVILS*LLSLPYIASTS Trigger: ACTGGTGGAAGCTATGTATGGCAAACTCAGCAACCAGGAAAGGATCACACTGTTAGACATAGTGATAGCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS TCA 72 bp | GGACTGAAGATGTTCGTGCTTTCTTTTCCAACTTCATaGATCACTCGTAAAACATCAATCACGCGTTCCATC | + |
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Preference number: 6 (lower is better) Translates to: GLKMFVLSFPTS*ITRKTSITRSI Trigger: GATGGAACGCGTGATTGATGTTTTACGAGTGATTCATGAAGTTGGAAAAGAAAGCACGAACATCTTCAGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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| CDS CAA 72 bp | GATCAGAGGAATGCCATCCAGCTCATTCACTTTGTCTaGGTTTTCTTTATTCTTGTAGCACAGATTTCCAAT | + |
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Preference number: 6 (lower is better) Translates to: DQRNAIQLIHFV*VFFILVAQISN Trigger: ATTGGAAATCTGTGCTACAAGAATAAAGAAAACCAAGACAAAGTGAATGAGCTGGATGGCATTCCTCTGATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163242.3 |
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