RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATPIF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054428

Ensembl transcript IDs: ENSMUST00000067496.7, ENSMUST00000152993.8

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp CAAAGCCATGTGTCTACAGACGTGGGGAGTGATACGGGCCACTCTGTGAGGGACTTATGGCGTTCAATTTaGTTCTGCAGACGCTCTATC +
Preference number: 4 (lower is better)
Translates to: QSHVSTDVGSDTGHSVRDLWRSI*FCRRSI
Trigger: GATAGAGCGTCTGCAGAAGCAAATTGAACGCCATAA...GTCCCTCACAGAGTGGCCCGTATCACTCCCCACGTCTGTAGACACATGGCTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067496.7
ENSMUST00000152993.8
CDS-3UTR CCA 90 bp CATGTGTCTACAGACGTGGGGAGTGATACGGGCCACTCTGTGAGGGACCGACTGTGGATCTTCTTCTTATaGCGTTCAATTTGCTTCTGC +
Preference number: 4 (lower is better)
Translates to: HVSTDVGSDTGHSVRDRLWIFFL*RSICFC
Trigger: GCAGAAGCAAATTGAACGCCATAAGAAGAAGATCCA...CAGTCGGTCCCTCACAGAGTGGCCCGTATCACTCCCCACGTCTGTAGACACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067496.7
ENSMUST00000152993.8
CDS-3UTR CCA 90 bp ACAGACCAAATAGTAATCATTCAAAGCCATGTGTCTACAGACGTGGGGAGTGATTCAATCTCATCTTCATaGTGTTTCCTCAGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: TDQIVIIQSHVSTDVGSDSISSS*CFLRAA
Trigger: GGCTGCCCTGAGGAAACACCATGAAGATGAGATTGA...ATCACTCCCCACGTCTGTAGACACATGGCTTTGAATGATTACTATTTGGTCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067496.7
ENSMUST00000152993.8
CDS-3UTR CCA 90 bp GCACACAGACCAAATAGTAATCATTCAAAGCCATGTGTCTACAGACGTGGGGAGTGGATCTTCTTCTTATaGCGTTCAATTTGCTTCTGC +
Preference number: 4 (lower is better)
Translates to: AHRPNSNHSKPCVYRRGEWIFFL*RSICFC
Trigger: GCAGAAGCAAATTGAACGCCATAAGAAGAAGATCCA...CTCCCCACGTCTGTAGACACATGGCTTTGAATGATTACTATTTGGTCTGTGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067496.7
ENSMUST00000152993.8
CDS-3UTR CCA 90 bp AGTTTCCTGGTGATCGTTTATTATCTGTTAGTAGCACACAGACCAAATAGTAATTCAATCTCATCTTCATaGTGTTTCCTCAGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: SFLVIVYYLLVAHRPNSNSISSS*CFLRAA
Trigger: GGCTGCCCTGAGGAAACACCATGAAGATGAGATTGA...ATTACTATTTGGTCTGTGTGCTACTAACAGATAATAAACGATCACCAGGAAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067496.7
ENSMUST00000152993.8
CDS-3UTR GCA 90 bp AGTTTCCTGGTGATCGTTTATTATCTGTTAGTAGCACACAGACCAAATAGTAATTTATGGCGTTCAATTTaGTTCTGCAGACGCTCTATC +
Preference number: 4 (lower is better)
Translates to: SFLVIVYYLLVAHRPNSNLWRSI*FCRRSI
Trigger: GATAGAGCGTCTGCAGAAGCAAATTGAACGCCATAA...ATTACTATTTGGTCTGTGTGCTACTAACAGATAATAAACGATCACCAGGAAACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067496.7
ENSMUST00000152993.8
CDS GCA 90 bp CGAAGGCTCCACCAGCTTCTCGGATGGAGCCAGCGCCCGTATCCATaGTATCCGACGAGTCCGAGACGAAGCCTCGGGTTTGCAGGACCT +
Preference number: 5 (lower is better)
Translates to: RRLHQLLGWSQRPYP*YPTSPRRSLGFAGP
Trigger: AGGTCCTGCAAACCCGAGGCTTCGTCTCGGACTCGTCGGATAGCATGGATACGGGCGCTGGCTCCATCCGAGAAGCTGGTGGAGCCTTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067496.7
CDS CCA 90 bp CTTCAGCCTTTTCTCGTTTTCCGAAGGCTCCACCAGCTTCTCGGATaGAGCCAGCGCCCGTATCCATGCTATCCGACGAGTCCGAGACGA +
Preference number: 5 (lower is better)
Translates to: LQPFLVFRRLHQLLG*SQRPYPCYPTSPRR
Trigger: TCGTCTCGGACTCGTCGGATAGCATGGATACGGGCGCTGGCTCCATCCGAGAAGCTGGTGGAGCCTTCGGAAAACGAGAAAAGGCTGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067496.7
CDS-3UTR CAA 90 bp TCTACAGACGTGGGGAGTGATACGGGCCACTCTGTGAGGGACCGACTGCGCGCACTTATGGCGTTCAATTaGCTTCTGCAGACGCTCTAT +
Preference number: 5 (lower is better)
Translates to: STDVGSDTGHSVRDRLRALMAFN*LLQTLY
Trigger: ATAGAGCGTCTGCAGAAGCAAATTGAACGCCATAAG...TGCGCGCAGTCGGTCCCTCACAGAGTGGCCCGTATCACTCCCCACGTCTGTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067496.7
ENSMUST00000152993.8
CDS CCA 90 bp TGGCGTTCAATTTGCTTCTGCAGACGCTCTATCTCCTTCGAATGGTaGTCAATCTCATCTTCATGGTGTTTCCTCAGGGCAGCCAGCTGT +
Preference number: 5 (lower is better)
Translates to: WRSICFCRRSISFEW*SISSSWCFLRAASC
Trigger: ACAGCTGGCTGCCCTGAGGAAACACCATGAAGATGAGATTGACCACCATTCGAAGGAGATAGAGCGTCTGCAGAAGCAAATTGAACGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067496.7
ENSMUST00000152993.8
CDS CCA 90 bp TTATGGCGTTCAATTTGCTTCTGCAGACGCTCTATCTCCTTCGAATaGTGGTCAATCTCATCTTCATGGTGTTTCCTCAGGGCAGCCAGC +
Preference number: 5 (lower is better)
Translates to: LWRSICFCRRSISFE*WSISSSWCFLRAAS
Trigger: GCTGGCTGCCCTGAGGAAACACCATGAAGATGAGATTGACCACCATTCGAAGGAGATAGAGCGTCTGCAGAAGCAAATTGAACGCCATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067496.7
ENSMUST00000152993.8
CDS-3UTR CAA 90 bp AGTTTCCTGGTGATCGTTTATTATCTGTTAGTAGCACACAGACCAAATAGTAATCTTATGGCGTTCAATTaGCTTCTGCAGACGCTCTAT +
Preference number: 5 (lower is better)
Translates to: SFLVIVYYLLVAHRPNSNLMAFN*LLQTLY
Trigger: ATAGAGCGTCTGCAGAAGCAAATTGAACGCCATAAG...ATTACTATTTGGTCTGTGTGCTACTAACAGATAATAAACGATCACCAGGAAACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067496.7
ENSMUST00000152993.8
CDS GCA 72 bp CACCAGCTTCTCGGATGGAGCCAGCGCCCGTATCCATaGTATCCGACGAGTCCGAGACGAAGCCTCGGGTTT +
Preference number: 6 (lower is better)
Translates to: HQLLGWSQRPYP*YPTSPRRSLGF
Trigger: AAACCCGAGGCTTCGTCTCGGACTCGTCGGATAGCATGGATACGGGCGCTGGCTCCATCCGAGAAGCTGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067496.7
CDS CCA 72 bp TTTCTCGTTTTCCGAAGGCTCCACCAGCTTCTCGGATaGAGCCAGCGCCCGTATCCATGCTATCCGACGAGT +
Preference number: 6 (lower is better)
Translates to: FLVFRRLHQLLG*SQRPYPCYPTS
Trigger: ACTCGTCGGATAGCATGGATACGGGCGCTGGCTCCATCCGAGAAGCTGGTGGAGCCTTCGGAAAACGAGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067496.7
CDS CCA 72 bp ATTTGCTTCTGCAGACGCTCTATCTCCTTCGAATGGTaGTCAATCTCATCTTCATGGTGTTTCCTCAGGGCA +
Preference number: 6 (lower is better)
Translates to: ICFCRRSISFEW*SISSSWCFLRA
Trigger: TGCCCTGAGGAAACACCATGAAGATGAGATTGACCACCATTCGAAGGAGATAGAGCGTCTGCAGAAGCAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067496.7
ENSMUST00000152993.8
CDS CCA 72 bp TCAATTTGCTTCTGCAGACGCTCTATCTCCTTCGAATaGTGGTCAATCTCATCTTCATGGTGTTTCCTCAGG +
Preference number: 6 (lower is better)
Translates to: SICFCRRSISFE*WSISSSWCFLR
Trigger: CCTGAGGAAACACCATGAAGATGAGATTGACCACCATTCGAAGGAGATAGAGCGTCTGCAGAAGCAAATTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067496.7
ENSMUST00000152993.8
CDS GCA 72 bp TTTAGTTGTTGGATCTTCTTCTTATGGCGTTCAATTTaGTTCTGCAGACGCTCTATCTCCTTCGAATGGTGG +
Preference number: 6 (lower is better)
Translates to: FSCWIFFLWRSI*FCRRSISFEWW
Trigger: CCACCATTCGAAGGAGATAGAGCGTCTGCAGAAGCAAATTGAACGCCATAAGAAGAAGATCCAACAACTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067496.7
ENSMUST00000152993.8