Pregenerated sensors for ATPAF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042709Ensembl transcript IDs: ENSMUST00000108721.9, ENSMUST00000145532.9, ENSMUST00000239016.2
Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCTCACTTCTGGTCAGACCAAGGGCGCCTGCATCGGAAGCTATCTaGCCTCAAGTCAGGCACACTGTGTCTTCAGGGCTTCTCAGGATG | + |
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Preference number: 1 (lower is better) Translates to: PSLLVRPRAPASEAI*PQVRHTVSSGLLRM Trigger: CATCCTGAGAAGCCCTGAAGACACAGTGTGCCTGACTTGAGGTCAGATAGCTTCCGATGCAGGCGCCCTTGGTCTGACCAGAAGTGAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| 3UTR TCA 90 bp | CAGTCAGGCGCAAGTCAATCAGGCCCAAAGTCAGCAACATGGATTTaGGCTGGGCCACTACAAACTCAATCCCTTGCAGAGCCCACATGT | + |
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Preference number: 1 (lower is better) Translates to: QSGASQSGPKSATWI*AGPLQTQSLAEPTC Trigger: ACATGTGGGCTCTGCAAGGGATTGAGTTTGTAGTGGCCCAGCTCAAATCCATGTTGCTGACTTTGGGCCTGATTGACTTGCGCCTGACTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| 3UTR GCA 90 bp | TCTGACCTCAAGTCAGGCACACTGTGTCTTCAGGGCTTCTCAGGATaGTTCTTTATAAGGTCAAACCACACAGGTCAGGGAAGACCCAGG | + |
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Preference number: 1 (lower is better) Translates to: SDLKSGTLCLQGFSG*FFIRSNHTGQGRPR Trigger: CCTGGGTCTTCCCTGACCTGTGTGGTTTGACCTTATAAAGAAGCATCCTGAGAAGCCCTGAAGACACAGTGTGCCTGACTTGAGGTCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| 3UTR TCA 90 bp | TGGAGGAGCCGATCTCCATACCGTACCTTTTCTCAGCCCACTCTATaGCGGGATCCCATTCGTTCTTCTGAAGTTCCACTAATGTCTCTG | + |
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Preference number: 1 (lower is better) Translates to: WRSRSPYRTFSQPTL*RDPIRSSEVPLMSL Trigger: CAGAGACATTAGTGGAACTTCAGAAGAACGAATGGGATCCCGTCATAGAGTGGGCTGAGAAAAGGTACGGTATGGAGATCGGCTCCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| 3UTR-3UTR CCA 90 bp | TCCTCCAGGCGTGACAGAAGCACAGCTTGTTCCACAGTCAGGCGCAAGTCAATCAGCACCTCTCGGGTCTaGGTAGGGATGCTGGGTCCC | + |
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Preference number: 2 (lower is better) Translates to: SSRRDRSTACSTVRRKSISTSRV*VGMLGP Trigger: GGGACCCAGCATCCCTACCCAGACCCGAGAGGTGCT...GATTGACTTGCGCCTGACTGTGGAACAAGCTGTGCTTCTGTCACGCCTGGAGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| 3UTR-3UTR GCA 90 bp | GGTACCGGCCAACAGAGTATCACAGGATCCAGAGGTCCAACAGCCAAGGAGGCCGGGAGCCTGTGTCTGTaGAATTCCTTCCAGACAGCG | + |
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Preference number: 2 (lower is better) Translates to: GTGQQSITGSRGPTAKEAGSLCL*NSFQTA Trigger: CGCTGTCTGGAAGGAATTGCACAGACACAGGCTCCC...GGCCTCCTTGGCTGTTGGACCTCTGGATCCTGTGATACTCTGTTGGCCGGTACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| 3UTR-3UTR GCA 90 bp | CCACTTGTCTTCCTCCCTCACTTCTGGTCAGACCAAGGGCGCCTGCATCGGAAGGGGAGCCTGTGTCTGTaGAATTCCTTCCAGACAGCG | + |
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Preference number: 2 (lower is better) Translates to: PLVFLPHFWSDQGRLHRKGSLCL*NSFQTA Trigger: CGCTGTCTGGAAGGAATTGCACAGACACAGGCTCCC...CTTCCGATGCAGGCGCCCTTGGTCTGACCAGAAGTGAGGGAGGAAGACAAGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| 3UTR-3UTR CCA 90 bp | GAGCTCATAGTCGTGGGCCCACTCAATGTTGCCCCACTTCTGGATCTGGTACTCTGGGTCCCATTATGCTaGTGGAGGAGCCGATCTCCA | + |
|
Preference number: 2 (lower is better) Translates to: ELIVVGPLNVAPLLDLVLWVPLC*WRSRSP Trigger: TGGAGATCGGCTCCTCCACCAGCATAATGGGACCCA...GAGTACCAGATCCAGAAGTGGGGCAACATTGAGTGGGCCCACGACTATGAGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| 3UTR-3UTR TCA 90 bp | TCCTCCAGGCGTGACAGAAGCACAGCTTGTTCCACAGTCAGGCGCAAGTCAATCTCTCAGCCCACTCTATaGCGGGATCCCATTCGTTCT | + |
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Preference number: 2 (lower is better) Translates to: SSRRDRSTACSTVRRKSISQPTL*RDPIRS Trigger: AGAACGAATGGGATCCCGTCATAGAGTGGGCTGAGA...GATTGACTTGCGCCTGACTGTGGAACAAGCTGTGCTTCTGTCACGCCTGGAGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| 3UTR-3UTR CCA 90 bp | TCCTCCAGGCGTGACAGAAGCACAGCTTGTTCCACAGTCAGGCGCAAGTCAATCGTCCCATTATGCTGGTaGAGGAGCCGATCTCCATAC | + |
|
Preference number: 2 (lower is better) Translates to: SSRRDRSTACSTVRRKSIVPLCW*RSRSPY Trigger: GTATGGAGATCGGCTCCTCCACCAGCATAATGGGAC...GATTGACTTGCGCCTGACTGTGGAACAAGCTGTGCTTCTGTCACGCCTGGAGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| 3UTR CAA 90 bp | ACAGTCAGGCGCAAGTCAATCAGGCCCAAAGTCAGCAACATGGATTaGAGCTGGGCCACTACAAACTCAATCCCTTGCAGAGCCCACATG | + |
|
Preference number: 2 (lower is better) Translates to: TVRRKSIRPKVSNMD*SWATTNSIPCRAHM Trigger: CATGTGGGCTCTGCAAGGGATTGAGTTTGTAGTGGCCCAGCTCAAATCCATGTTGCTGACTTTGGGCCTGATTGACTTGCGCCTGACTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| 3UTR-3UTR TCA 90 bp | GTGACAGAAGCACAGCTTGTTCCACAGTCAGGCGCAAGTCAATCAGGCCCAAAGTCAGCAACATGGATTTaGGCTGGGCCACTACAAACT | + |
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Preference number: 2 (lower is better) Translates to: VTEAQLVPQSGASQSGPKSATWI*AGPLQT Trigger: AGTTTGTAGTGGCCCAGCTCAAATCCATGTTGCTGA...CTTTGGGCCTGATTGACTTGCGCCTGACTGTGGAACAAGCTGTGCTTCTGTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| 3UTR CAA 90 bp | AGTCAGCAACATGGATTTGAGCTGGGCCACTACAAACTCAATCCCTaGCAGAGCCCACATGTTGTAAGAGGACAAGTGGCTGGTAAGCAC | + |
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Preference number: 2 (lower is better) Translates to: SQQHGFELGHYKLNP*QSPHVVRGQVAGKH Trigger: GTGCTTACCAGCCACTTGTCCTCTTACAACATGTGGGCTCTGCAAGGGATTGAGTTTGTAGTGGCCCAGCTCAAATCCATGTTGCTGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| 3UTR GCA 72 bp | GCTCCTGGAGCTCATAGTCGTGGGCCCACTCAATGTTaGCCCACTTCTGGATCTGGTACTCTTCCTCCAGGC | + |
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Preference number: 3 (lower is better) Translates to: APGAHSRGPTQC*PTSGSGTLPPG Trigger: GCCTGGAGGAAGAGTACCAGATCCAGAAGTGGGGCAACATTGAGTGGGCCCACGACTATGAGCTCCAGGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| 3UTR TCA 72 bp | GCCCCACTTCTGGATCTGGTACTCTTCCTCCAGGCGTaGCAGAAGCACAGCTTGTTCCACAGTCAGGCGCAA | + |
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Preference number: 3 (lower is better) Translates to: APLLDLVLFLQA*QKHSLFHSQAQ Trigger: TTGCGCCTGACTGTGGAACAAGCTGTGCTTCTGTCACGCCTGGAGGAAGAGTACCAGATCCAGAAGTGGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| 3UTR GCA 72 bp | TCTTCCTCCCTCACTTCTGGTCAGACCAAGGGCGCCTaGATCGGAAGCTATCTGACCTCAAGTCAGGCACAC | + |
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Preference number: 3 (lower is better) Translates to: SSSLTSGQTKGA*IGSYLTSSQAH Trigger: GTGTGCCTGACTTGAGGTCAGATAGCTTCCGATGCAGGCGCCCTTGGTCTGACCAGAAGTGAGGGAGGAAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| 3UTR TCA 72 bp | CCACCATGTGGCTGCTGGGAATTGAACTCACGACCTTaGGAAGAGCAGTCAGTGCTCGTAACCGCTGAGCCA | + |
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Preference number: 3 (lower is better) Translates to: PPCGCWELNSRP*EEQSVLVTAEP Trigger: TGGCTCAGCGGTTACGAGCACTGACTGCTCTTCTCAAGGTCGTGAGTTCAATTCCCAGCAGCCACATGGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| 3UTR TCA 72 bp | CAGATGGTTGTGAGCCACCATGTGGCTGCTGGGAATTaGACTCACGACCTTGAGAAGAGCAGTCAGTGCTCG | + |
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Preference number: 3 (lower is better) Translates to: QMVVSHHVAAGN*THDLEKSSQCS Trigger: CGAGCACTGACTGCTCTTCTCAAGGTCGTGAGTTCAATTCCCAGCAGCCACATGGTGGCTCACAACCATCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| 3UTR TCA 72 bp | ACGACCTTGAGAAGAGCAGTCAGTGCTCGTAACCGCTaGGCCATCTCTCCAGCCCTCCAAAGATTCACTTTT | + |
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Preference number: 3 (lower is better) Translates to: TTLRRAVSARNR*AISPALQRFTF Trigger: AAAAGTGAATCTTTGGAGGGCTGGAGAGATGGCTCAGCGGTTACGAGCACTGACTGCTCTTCTCAAGGTCGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| 3UTR CCA 72 bp | TCAATCAGGCCCAAAGTCAGCAACATGGATTTGAGCTaGGCCACTACAAACTCAATCCCTTGCAGAGCCCAC | + |
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Preference number: 3 (lower is better) Translates to: SIRPKVSNMDLS*ATTNSIPCRAH Trigger: GTGGGCTCTGCAAGGGATTGAGTTTGTAGTGGCCCAGCTCAAATCCATGTTGCTGACTTTGGGCCTGATTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| 3UTR GCA 72 bp | AAGTCAGGCACACTGTGTCTTCAGGGCTTCTCAGGATaGTTCTTTATAAGGTCAAACCACACAGGTCAGGGA | + |
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Preference number: 3 (lower is better) Translates to: KSGTLCLQGFSG*FFIRSNHTGQG Trigger: TCCCTGACCTGTGTGGTTTGACCTTATAAAGAAGCATCCTGAGAAGCCCTGAAGACACAGTGTGCCTGACTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| 3UTR-3UTR CAA 90 bp | CTCGTAACCGCTGAGCCATCTCTCCAGCCCTCCAAAGATTCACTTTTAAAAGATAAGTCCCTATACCACTaGTCTTCCTCCCTCACTTCT | + |
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Preference number: 3 (lower is better) Translates to: LVTAEPSLQPSKDSLLKDKSLYH*SSSLTS Trigger: AGAAGTGAGGGAGGAAGACAAGTGGTATAGGGACTT...ATCTTTTAAAAGTGAATCTTTGGAGGGCTGGAGAGATGGCTCAGCGGTTACGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR CCA 90 bp | ACCACTTGTCTTCCTCCCTCACTTCTGGTCAGACCAAGGGCGCCTGCATCGGAAAGCACCTCTCGGGTCTaGGTAGGGATGCTGGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: TTCLPPSLLVRPRAPASESTSRV*VGMLGP Trigger: GGGACCCAGCATCCCTACCCAGACCCGAGAGGTGCT...TTCCGATGCAGGCGCCCTTGGTCTGACCAGAAGTGAGGGAGGAAGACAAGTGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR CCA 90 bp | ATAGGGCTGAGGGAGCCCAGTAGGTACCGGCCAACAGAGTATCACAGGATCCAGAGCACCTCTCGGGTCTaGGTAGGGATGCTGGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: IGLREPSRYRPTEYHRIQSTSRV*VGMLGP Trigger: GGGACCCAGCATCCCTACCCAGACCCGAGAGGTGCT...CTGGATCCTGTGATACTCTGTTGGCCGGTACCTACTGGGCTCCCTCAGCCCTAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR GCA 90 bp | GGCCAACAGAGTATCACAGGATCCAGAGGTCCAACAGCCAAGGAGGCCCACATCCCATTCAGTGGCCACTaGGATGGCCAGGGCTTCGCT | + |
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Preference number: 4 (lower is better) Translates to: GQQSITGSRGPTAKEAHIPFSGH*DGQGFA Trigger: AGCGAAGCCCTGGCCATCGCAGTGGCCACTGAATGG...GATGTGGGCCTCCTTGGCTGTTGGACCTCTGGATCCTGTGATACTCTGTTGGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR CCA 90 bp | ATAGGGCTGAGGGAGCCCAGTAGGTACCGGCCAACAGAGTATCACAGGATCCAGGAGAGTCCCATTCAGTaGCCACTGCGATGGCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: IGLREPSRYRPTEYHRIQESPIQ*PLRWPG Trigger: CCCTGGCCATCGCAGTGGCCACTGAATGGGACTCTC...CTGGATCCTGTGATACTCTGTTGGCCGGTACCTACTGGGCTCCCTCAGCCCTAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR CCA 90 bp | GGTAGGGATGCTGGGTCCCATTATGCTGGTGGAGGAGCCGATCTCCATACCGTAGAGAGTCCCATTCAGTaGCCACTGCGATGGCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: GRDAGSHYAGGGADLHTVESPIQ*PLRWPG Trigger: CCCTGGCCATCGCAGTGGCCACTGAATGGGACTCTC...TACGGTATGGAGATCGGCTCCTCCACCAGCATAATGGGACCCAGCATCCCTACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| CDS-3UTR GCA 90 bp | GGTACCGGCCAACAGAGTATCACAGGATCCAGAGGTCCAACAGCCAAGGAGGCCGGGCCCACTCAATGTTaGCCCACTTCTGGATCTGGT | + |
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Preference number: 4 (lower is better) Translates to: GTGQQSITGSRGPTAKEAGPTQC*PTSGSG Trigger: ACCAGATCCAGAAGTGGGGCAACATTGAGTGGGCCC...GGCCTCCTTGGCTGTTGGACCTCTGGATCCTGTGATACTCTGTTGGCCGGTACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR GCA 90 bp | GTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCCCCAGATCTTGTTACAGGGTGCCAGCAGCAGTaGGAGCCCGCAGCTCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: VHCSCLQTHQKRAPDLVTGCQQQ*EPAAPG Trigger: TCCAGGAGCTGCGGGCTCGCACTGCTGCTGGCACCC...TGTAACAAGATCTGGGGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR CCA 90 bp | CGTGGGCCCACTCAATGTTGCCCCACTTCTGGATCTGGTACTCTTCCTCCAGGCGCTGCCCGGATCAGCTaGTCTTTACTTCGCTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: RGPTQCCPTSGSGTLPPGAARIS*SLLRWV Trigger: AACCCAGCGAAGTAAAGACCAGCTGATCCGGGCAGC...GCCTGGAGGAAGAGTACCAGATCCAGAAGTGGGGCAACATTGAGTGGGCCCACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| CDS-3UTR GCA 90 bp | CCGATCTCCATACCGTACCTTTTCTCAGCCCACTCTATGACGGGATCCCATTCGCCATTCAGTGGCCACTaGGATGGCCAGGGCTTCGCT | + |
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Preference number: 4 (lower is better) Translates to: PISIPYLFSAHSMTGSHSPFSGH*DGQGFA Trigger: AGCGAAGCCCTGGCCATCGCAGTGGCCACTGAATGG...CGAATGGGATCCCGTCATAGAGTGGGCTGAGAAAAGGTACGGTATGGAGATCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
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| CDS-3UTR GCA 90 bp | ATAGGGCTGAGGGAGCCCAGTAGGTACCGGCCAACAGAGTATCACAGGATCCAGGGGCCCACTCAATGTTaGCCCACTTCTGGATCTGGT | + |
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Preference number: 4 (lower is better) Translates to: IGLREPSRYRPTEYHRIQGPTQC*PTSGSG Trigger: ACCAGATCCAGAAGTGGGGCAACATTGAGTGGGCCC...CTGGATCCTGTGATACTCTGTTGGCCGGTACCTACTGGGCTCCCTCAGCCCTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR GCA 90 bp | TCAAGAGAAAGTCCCTATACCACTTGTCTTCCTCCCTCACTTCTGGTCAGACCAGGGTGCCAGCAGCAGTaGGAGCCCGCAGCTCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: SRESPYTTCLPPSLLVRPGCQQQ*EPAAPG Trigger: TCCAGGAGCTGCGGGCTCGCACTGCTGCTGGCACCC...TGGTCTGACCAGAAGTGAGGGAGGAAGACAAGTGGTATAGGGACTTTCTCTTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR CCA 90 bp | GGCCAACAGAGTATCACAGGATCCAGAGGTCCAACAGCCAAGGAGGCCCACATCGCTGCCCGGATCAGCTaGTCTTTACTTCGCTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: GQQSITGSRGPTAKEAHIAARIS*SLLRWV Trigger: AACCCAGCGAAGTAAAGACCAGCTGATCCGGGCAGC...GATGTGGGCCTCCTTGGCTGTTGGACCTCTGGATCCTGTGATACTCTGTTGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR CCA 90 bp | AGGGAGCCCAGTAGGTACCGGCCAACAGAGTATCACAGGATCCAGAGGTCCAACGCTGCCCGGATCAGCTaGTCTTTACTTCGCTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: REPSRYRPTEYHRIQRSNAARIS*SLLRWV Trigger: AACCCAGCGAAGTAAAGACCAGCTGATCCGGGCAGC...GTTGGACCTCTGGATCCTGTGATACTCTGTTGGCCGGTACCTACTGGGCTCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR CCA 90 bp | CCACTTGTCTTCCTCCCTCACTTCTGGTCAGACCAAGGGCGCCTGCATCGGAAGGTCCCATTATGCTGGTaGAGGAGCCGATCTCCATAC | + |
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Preference number: 4 (lower is better) Translates to: PLVFLPHFWSDQGRLHRKVPLCW*RSRSPY Trigger: GTATGGAGATCGGCTCCTCCACCAGCATAATGGGAC...CTTCCGATGCAGGCGCCCTTGGTCTGACCAGAAGTGAGGGAGGAAGACAAGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR CCA 90 bp | GGCCAACAGAGTATCACAGGATCCAGAGGTCCAACAGCCAAGGAGGCCCACATCTGGGTCCCATTATGCTaGTGGAGGAGCCGATCTCCA | + |
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Preference number: 4 (lower is better) Translates to: GQQSITGSRGPTAKEAHIWVPLC*WRSRSP Trigger: TGGAGATCGGCTCCTCCACCAGCATAATGGGACCCA...GATGTGGGCCTCCTTGGCTGTTGGACCTCTGGATCCTGTGATACTCTGTTGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR CCA 90 bp | ACCACTTGTCTTCCTCCCTCACTTCTGGTCAGACCAAGGGCGCCTGCATCGGAATGGGTCCCATTATGCTaGTGGAGGAGCCGATCTCCA | + |
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Preference number: 4 (lower is better) Translates to: TTCLPPSLLVRPRAPASEWVPLC*WRSRSP Trigger: TGGAGATCGGCTCCTCCACCAGCATAATGGGACCCA...TTCCGATGCAGGCGCCCTTGGTCTGACCAGAAGTGAGGGAGGAAGACAAGTGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR TCA 90 bp | ACCACTTGTCTTCCTCCCTCACTTCTGGTCAGACCAAGGGCGCCTGCATCGGAATCTCAGCCCACTCTATaGCGGGATCCCATTCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: TTCLPPSLLVRPRAPASESQPTL*RDPIRS Trigger: AGAACGAATGGGATCCCGTCATAGAGTGGGCTGAGA...TTCCGATGCAGGCGCCCTTGGTCTGACCAGAAGTGAGGGAGGAAGACAAGTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR CCA 90 bp | GGTACCGGCCAACAGAGTATCACAGGATCCAGAGGTCCAACAGCCAAGGAGGCCATGTTGCCCCACTTCTaGATCTGGTACTCTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: GTGQQSITGSRGPTAKEAMLPHF*IWYSSS Trigger: GGAGGAAGAGTACCAGATCCAGAAGTGGGGCAACAT...GGCCTCCTTGGCTGTTGGACCTCTGGATCCTGTGATACTCTGTTGGCCGGTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR GCA 90 bp | TCAGGGTCAAGAGAAAGTCCCTATACCACTTGTCTTCCTCCCTCACTTCTGGTCGGTGGACAAAAAGGGTaGCAGCAGCAGTGCGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: SGSRESPYTTCLPPSLLVGGQKG*QQQCEP Trigger: GGGCTCGCACTGCTGCTGGCACCCTTTTTGTCCACC...GACCAGAAGTGAGGGAGGAAGACAAGTGGTATAGGGACTTTCTCTTGACCCTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR CCA 90 bp | GGCCAACAGAGTATCACAGGATCCAGAGGTCCAACAGCCAAGGAGGCCCACATCATGTTGCCCCACTTCTaGATCTGGTACTCTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: GQQSITGSRGPTAKEAHIMLPHF*IWYSSS Trigger: GGAGGAAGAGTACCAGATCCAGAAGTGGGGCAACAT...GATGTGGGCCTCCTTGGCTGTTGGACCTCTGGATCCTGTGATACTCTGTTGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR CCA 90 bp | GGCCAACAGAGTATCACAGGATCCAGAGGTCCAACAGCCAAGGAGGCCCACATCCTTTCTGAGCAGAGGTaGACAAAAAGGGTGCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: GQQSITGSRGPTAKEAHILSEQR*TKRVPA Trigger: TGCTGGCACCCTTTTTGTCCACCTCTGCTCAGAAAG...GATGTGGGCCTCCTTGGCTGTTGGACCTCTGGATCCTGTGATACTCTGTTGGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR GCA 90 bp | GACCTCAAGTCAGGCACACTGTGTCTTCAGGGCTTCTCAGGATGCTTCTTTATACCATTCAGTGGCCACTaGGATGGCCAGGGCTTCGCT | + |
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Preference number: 4 (lower is better) Translates to: DLKSGTLCLQGFSGCFFIPFSGH*DGQGFA Trigger: AGCGAAGCCCTGGCCATCGCAGTGGCCACTGAATGG...TATAAAGAAGCATCCTGAGAAGCCCTGAAGACACAGTGTGCCTGACTTGAGGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR GCA 90 bp | ATAGGGCTGAGGGAGCCCAGTAGGTACCGGCCAACAGAGTATCACAGGATCCAGTGTCCAAGGATGTGTTaGACAATGTGGTCAGGTGCA | + |
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Preference number: 4 (lower is better) Translates to: IGLREPSRYRPTEYHRIQCPRMC*TMWSGA Trigger: TGCACCTGACCACATTGTGCAACACATCCTTGGACA...CTGGATCCTGTGATACTCTGTTGGCCGGTACCTACTGGGCTCCCTCAGCCCTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
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| CDS-3UTR GCA 90 bp | CAAGAGAAAGTCCCTATACCACTTGTCTTCCTCCCTCACTTCTGGTCAGACCAAGGTGGACAAAAAGGGTaGCAGCAGCAGTGCGAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: QEKVPIPLVFLPHFWSDQGGQKG*QQQCEP Trigger: GGGCTCGCACTGCTGCTGGCACCCTTTTTGTCCACC...TTGGTCTGACCAGAAGTGAGGGAGGAAGACAAGTGGTATAGGGACTTTCTCTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR GCA 90 bp | GGAGCCGATCTCCATACCGTACCTTTTCTCAGCCCACTCTATGACGGGATCCCATGTCCAAGGATGTGTTaGACAATGTGGTCAGGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: GADLHTVPFLSPLYDGIPCPRMC*TMWSGA Trigger: TGCACCTGACCACATTGTGCAACACATCCTTGGACA...TGGGATCCCGTCATAGAGTGGGCTGAGAAAAGGTACGGTATGGAGATCGGCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
||
| CDS-3UTR CCA 90 bp | GGATCCAGAGGTCCAACAGCCAAGGAGGCCCACATCAGGGAGCCTGTGTCTGTGGTTTTCAGCTTTCTGTaGTCCAGGTTTATCTCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: GSRGPTAKEAHIREPVSVVFSFL*SRFISK Trigger: CTTTGAGATAAACCTGGACCACAGAAAGCTGAAAAC...CACAGACACAGGCTCCCTGATGTGGGCCTCCTTGGCTGTTGGACCTCTGGATCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR CCA 90 bp | GGAGCCGATCTCCATACCGTACCTTTTCTCAGCCCACTCTATGACGGGATCCCATTTACTTCGCTGGGTTaGGTTGTCCAAGGATGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: GADLHTVPFLSPLYDGIPFTSLG*VVQGCV Trigger: AACACATCCTTGGACAACCCAACCCAGCGAAGTAAA...TGGGATCCCGTCATAGAGTGGGCTGAGAAAAGGTACGGTATGGAGATCGGCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
||
| CDS-3UTR CCA 90 bp | ATAGGGCTGAGGGAGCCCAGTAGGTACCGGCCAACAGAGTATCACAGGATCCAGAACATGGATTTGAGCTaGGCCACTACAAACTCAATC | + |
|
Preference number: 4 (lower is better) Translates to: IGLREPSRYRPTEYHRIQNMDLS*ATTNSI Trigger: GATTGAGTTTGTAGTGGCCCAGCTCAAATCCATGTT...CTGGATCCTGTGATACTCTGTTGGCCGGTACCTACTGGGCTCCCTCAGCCCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR TCA 90 bp | GCTGGGCCACTACAAACTCAATCCCTTGCAGAGCCCACATGTTGTAAGAGGACAGCATGGTGTAGAACTTaGTGGTATCCTGCTGAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: AGPLQTQSLAEPTCCKRTAWCRT*WYPAES Trigger: ACTCTCAGCAGGATACCATCAAGTTCTACACCATGC...TGTCCTCTTACAACATGTGGGCTCTGCAAGGGATTGAGTTTGTAGTGGCCCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
||
| CDS-3UTR CCA 90 bp | GGCCAACAGAGTATCACAGGATCCAGAGGTCCAACAGCCAAGGAGGCCCACATCGTTTTCAGCTTTCTGTaGTCCAGGTTTATCTCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: GQQSITGSRGPTAKEAHIVFSFL*SRFISK Trigger: CTTTGAGATAAACCTGGACCACAGAAAGCTGAAAAC...GATGTGGGCCTCCTTGGCTGTTGGACCTCTGGATCCTGTGATACTCTGTTGGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR CCA 90 bp | TGGGCCCACTCAATGTTGCCCCACTTCTGGATCTGGTACTCTTCCTCCAGGCGTGTTTTCAGCTTTCTGTaGTCCAGGTTTATCTCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: WAHSMLPHFWIWYSSSRRVFSFL*SRFISK Trigger: CTTTGAGATAAACCTGGACCACAGAAAGCTGAAAAC...ACGCCTGGAGGAAGAGTACCAGATCCAGAAGTGGGGCAACATTGAGTGGGCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
||
| CDS-3UTR CCA 90 bp | GACCTCAAGTCAGGCACACTGTGTCTTCAGGGCTTCTCAGGATGCTTCTTTATAGTCCCATTATGCTGGTaGAGGAGCCGATCTCCATAC | + |
|
Preference number: 4 (lower is better) Translates to: DLKSGTLCLQGFSGCFFIVPLCW*RSRSPY Trigger: GTATGGAGATCGGCTCCTCCACCAGCATAATGGGAC...TATAAAGAAGCATCCTGAGAAGCCCTGAAGACACAGTGTGCCTGACTTGAGGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR CCA 90 bp | GTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCCCCAGATCTTGTTACACTTTCTGAGCAGAGGTaGACAAAAAGGGTGCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: VHCSCLQTHQKRAPDLVTLSEQR*TKRVPA Trigger: TGCTGGCACCCTTTTTGTCCACCTCTGCTCAGAAAG...TGTAACAAGATCTGGGGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| 3UTR CAA 72 bp | CATGGATTTGAGCTGGGCCACTACAAACTCAATCCCTaGCAGAGCCCACATGTTGTAAGAGGACAAGTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: HGFELGHYKLNP*QSPHVVRGQVA Trigger: AGCCACTTGTCCTCTTACAACATGTGGGCTCTGCAAGGGATTGAGTTTGTAGTGGCCCAGCTCAAATCCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
||
| CDS-3UTR TCA 90 bp | GTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCCCCAGATCTTGTTACACACCCTGTGAGATGCTaGCATTCTGATAAAACCTCT | + |
|
Preference number: 4 (lower is better) Translates to: VHCSCLQTHQKRAPDLVTHPVRC*HSDKTS Trigger: AGAGGTTTTATCAGAATGTCAGCATCTCACAGGGTG...TGTAACAAGATCTGGGGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR TCA 90 bp | GGGTCAAGAGAAAGTCCCTATACCACTTGTCTTCCTCCCTCACTTCTGGTCAGACACCCTGTGAGATGCTaGCATTCTGATAAAACCTCT | + |
|
Preference number: 4 (lower is better) Translates to: GSRESPYTTCLPPSLLVRHPVRC*HSDKTS Trigger: AGAGGTTTTATCAGAATGTCAGCATCTCACAGGGTG...TCTGACCAGAAGTGAGGGAGGAAGACAAGTGGTATAGGGACTTTCTCTTGACCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR TCA 90 bp | CCTCAAGTCAGGCACACTGTGTCTTCAGGGCTTCTCAGGATGCTTCTTTATAAGTCAGCAACATGGATTTaGGCTGGGCCACTACAAACT | + |
|
Preference number: 4 (lower is better) Translates to: PQVRHTVSSGLLRMLLYKSATWI*AGPLQT Trigger: AGTTTGTAGTGGCCCAGCTCAAATCCATGTTGCTGA...CTTATAAAGAAGCATCCTGAGAAGCCCTGAAGACACAGTGTGCCTGACTTGAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR GCA 90 bp | ATGAGGTTCCTAGCCATTAGTAGCAGATGTAATAATGGTGACAGAGCTCAGATAAGATTCGCCACATCCTaGCCAAGGACCTGGGTGGAC | + |
|
Preference number: 4 (lower is better) Translates to: MRFLAISSRCNNGDRAQIRFATS*PRTWVD Trigger: GTCCACCCAGGTCCTTGGGCAGGATGTGGCGAATCT...TATCTGAGCTCTGTCACCATTATTACATCTGCTACTAATGGCTAGGAACCTCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239016.2 |
||
| CDS-3UTR TCA 90 bp | TTTGAGCTGGGCCACTACAAACTCAATCCCTTGCAGAGCCCACATGTTGTAAGACACCCTGTGAGATGCTaGCATTCTGATAAAACCTCT | + |
|
Preference number: 4 (lower is better) Translates to: FELGHYKLNPLQSPHVVRHPVRC*HSDKTS Trigger: AGAGGTTTTATCAGAATGTCAGCATCTCACAGGGTG...TCTTACAACATGTGGGCTCTGCAAGGGATTGAGTTTGTAGTGGCCCAGCTCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
||
| CDS-3UTR TCA 90 bp | CTCGTAACCGCTGAGCCATCTCTCCAGCCCTCCAAAGATTCACTTTTAAAAGATGCATGGTGTAGAACTTaGTGGTATCCTGCTGAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: LVTAEPSLQPSKDSLLKDAWCRT*WYPAES Trigger: ACTCTCAGCAGGATACCATCAAGTTCTACACCATGC...ATCTTTTAAAAGTGAATCTTTGGAGGGCTGGAGAGATGGCTCAGCGGTTACGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR TCA 90 bp | CTCGTAACCGCTGAGCCATCTCTCCAGCCCTCCAAAGATTCACTTTTAAAAGATTCAGCAACATGGATTTaGGCTGGGCCACTACAAACT | + |
|
Preference number: 4 (lower is better) Translates to: LVTAEPSLQPSKDSLLKDSATWI*AGPLQT Trigger: AGTTTGTAGTGGCCCAGCTCAAATCCATGTTGCTGA...ATCTTTTAAAAGTGAATCTTTGGAGGGCTGGAGAGATGGCTCAGCGGTTACGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR CCA 90 bp | GACCTCAAGTCAGGCACACTGTGTCTTCAGGGCTTCTCAGGATGCTTCTTTATATTTACTTCGCTGGGTTaGGTTGTCCAAGGATGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: DLKSGTLCLQGFSGCFFIFTSLG*VVQGCV Trigger: AACACATCCTTGGACAACCCAACCCAGCGAAGTAAA...TATAAAGAAGCATCCTGAGAAGCCCTGAAGACACAGTGTGCCTGACTTGAGGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR TCA 90 bp | ATGAGGTTCCTAGCCATTAGTAGCAGATGTAATAATGGTGACAGAGCTCAGATATCTCAGCCCACTCTATaGCGGGATCCCATTCGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: MRFLAISSRCNNGDRAQISQPTL*RDPIRS Trigger: AGAACGAATGGGATCCCGTCATAGAGTGGGCTGAGA...TATCTGAGCTCTGTCACCATTATTACATCTGCTACTAATGGCTAGGAACCTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR CCA 90 bp | CTCGTAACCGCTGAGCCATCTCTCCAGCCCTCCAAAGATTCACTTTTAAAAGATTTTACTTCGCTGGGTTaGGTTGTCCAAGGATGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: LVTAEPSLQPSKDSLLKDFTSLG*VVQGCV Trigger: AACACATCCTTGGACAACCCAACCCAGCGAAGTAAA...ATCTTTTAAAAGTGAATCTTTGGAGGGCTGGAGAGATGGCTCAGCGGTTACGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR CCA 90 bp | CTCGTAACCGCTGAGCCATCTCTCCAGCCCTCCAAAGATTCACTTTTAAAAGATAACATGGATTTGAGCTaGGCCACTACAAACTCAATC | + |
|
Preference number: 4 (lower is better) Translates to: LVTAEPSLQPSKDSLLKDNMDLS*ATTNSI Trigger: GATTGAGTTTGTAGTGGCCCAGCTCAAATCCATGTT...ATCTTTTAAAAGTGAATCTTTGGAGGGCTGGAGAGATGGCTCAGCGGTTACGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR CCA 90 bp | AAAGTCAGCAACATGGATTTGAGCTGGGCCACTACAAACTCAATCCCTTGCAGAGTAAAAACCACCAGATaGTGTCAGTGTCTAGAAACT | + |
|
Preference number: 4 (lower is better) Translates to: KVSNMDLSWATTNSIPCRVKTTR*CQCLET Trigger: AGTTTCTAGACACTGACACCATCTGGTGGTTTTTAC...TCTGCAAGGGATTGAGTTTGTAGTGGCCCAGCTCAAATCCATGTTGCTGACTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
||
| CDS-3UTR CAA 90 bp | GGTACTCTTCCTCCAGGCGTGACAGAAGCACAGCTTGTTCCACAGTCAGGCGCACTTCGCTGGGTTGGGTaGTCCAAGGATGTGTTGCAC | + |
|
Preference number: 5 (lower is better) Translates to: GTLPPGVTEAQLVPQSGALRWVG*SKDVLH Trigger: GTGCAACACATCCTTGGACAACCCAACCCAGCGAAG...TGCGCCTGACTGTGGAACAAGCTGTGCTTCTGTCACGCCTGGAGGAAGAGTACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
||
| CDS-3UTR CAA 90 bp | GGTACCGGCCAACAGAGTATCACAGGATCCAGAGGTCCAACAGCCAAGGAGGCCCTTTACTTCGCTGGGTaGGGTTGTCCAAGGATGTGT | + |
|
Preference number: 5 (lower is better) Translates to: GTGQQSITGSRGPTAKEALYFAG*GCPRMC Trigger: ACACATCCTTGGACAACCCAACCCAGCGAAGTAAAG...GGCCTCCTTGGCTGTTGGACCTCTGGATCCTGTGATACTCTGTTGGCCGGTACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS GCA 90 bp | GTAGAACTTGATGGTATCCTGCTGAGAGTCCCATTCAGTGGCCACTaGGATGGCCAGGGCTTCGCTGGGGACAGTAAAAAGCTTGGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: VELDGILLRVPFSGH*DGQGFAGDSKKLGL Trigger: CAAGCCAAGCTTTTTACTGTCCCCAGCGAAGCCCTGGCCATCGCAGTGGCCACTGAATGGGACTCTCAGCAGGATACCATCAAGTTCTAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000108721.9 ENSMUST00000145532.9 ENSMUST00000239016.2 |
||
| CDS-3UTR CAA 90 bp | ATAGGGCTGAGGGAGCCCAGTAGGTACCGGCCAACAGAGTATCACAGGATCCAGTTGTCCAAGGATGTGTaGCACAATGTGGTCAGGTGC | + |
|
Preference number: 5 (lower is better) Translates to: IGLREPSRYRPTEYHRIQLSKDV*HNVVRC Trigger: GCACCTGACCACATTGTGCAACACATCCTTGGACAA...CTGGATCCTGTGATACTCTGTTGGCCGGTACCTACTGGGCTCCCTCAGCCCTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR CAA 90 bp | GGCCAACAGAGTATCACAGGATCCAGAGGTCCAACAGCCAAGGAGGCCCACATCCTTTACTTCGCTGGGTaGGGTTGTCCAAGGATGTGT | + |
|
Preference number: 5 (lower is better) Translates to: GQQSITGSRGPTAKEAHILYFAG*GCPRMC Trigger: ACACATCCTTGGACAACCCAACCCAGCGAAGTAAAG...GATGTGGGCCTCCTTGGCTGTTGGACCTCTGGATCCTGTGATACTCTGTTGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS CCA 90 bp | AAACTTCACAGCTGCCCGGATCAGCTGGTCTTTACTTCGCTGGGTTaGGTTGTCCAAGGATGTGTTGCACAATGTGGTCAGGTGCATGGT | + |
|
Preference number: 5 (lower is better) Translates to: KLHSCPDQLVFTSLG*VVQGCVAQCGQVHG Trigger: ACCATGCACCTGACCACATTGTGCAACACATCCTTGGACAACCCAACCCAGCGAAGTAAAGACCAGCTGATCCGGGCAGCTGTGAAGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108721.9 ENSMUST00000145532.9 ENSMUST00000239016.2 |
||
| CDS CCA 90 bp | TCTAGAAACTTCACAGCTGCCCGGATCAGCTGGTCTTTACTTCGCTaGGTTGGGTTGTCCAAGGATGTGTTGCACAATGTGGTCAGGTGC | + |
|
Preference number: 5 (lower is better) Translates to: SRNFTAARISWSLLR*VGLSKDVLHNVVRC Trigger: GCACCTGACCACATTGTGCAACACATCCTTGGACAACCCAACCCAGCGAAGTAAAGACCAGCTGATCCGGGCAGCTGTGAAGTTTCTAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108721.9 ENSMUST00000145532.9 ENSMUST00000239016.2 |
||
| CDS CCA 90 bp | CAGATGGTGTCAGTGTCTAGAAACTTCACAGCTGCCCGGATCAGCTaGTCTTTACTTCGCTGGGTTGGGTTGTCCAAGGATGTGTTGCAC | + |
|
Preference number: 5 (lower is better) Translates to: QMVSVSRNFTAARIS*SLLRWVGLSKDVLH Trigger: GTGCAACACATCCTTGGACAACCCAACCCAGCGAAGTAAAGACCAGCTGATCCGGGCAGCTGTGAAGTTTCTAGACACTGACACCATCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108721.9 ENSMUST00000145532.9 ENSMUST00000239016.2 |
||
| CDS-3UTR CAA 90 bp | CCTCAAGTCAGGCACACTGTGTCTTCAGGGCTTCTCAGGATGCTTCTTTATAAGCTTCGCTGGGTTGGGTaGTCCAAGGATGTGTTGCAC | + |
|
Preference number: 5 (lower is better) Translates to: PQVRHTVSSGLLRMLLYKLRWVG*SKDVLH Trigger: GTGCAACACATCCTTGGACAACCCAACCCAGCGAAG...CTTATAAAGAAGCATCCTGAGAAGCCCTGAAGACACAGTGTGCCTGACTTGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR CAA 90 bp | TGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCCCCAGATCTTGTTGTCCAAGGATGTGTaGCACAATGTGGTCAGGTGC | + |
|
Preference number: 5 (lower is better) Translates to: CKYTVAVFRHTRRGPQILLSKDV*HNVVRC Trigger: GCACCTGACCACATTGTGCAACACATCCTTGGACAA...CAAGATCTGGGGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR CAA 90 bp | GATCTCCATACCGTACCTTTTCTCAGCCCACTCTATGACGGGATCCCATTCGTTTTGTCCAAGGATGTGTaGCACAATGTGGTCAGGTGC | + |
|
Preference number: 5 (lower is better) Translates to: DLHTVPFLSPLYDGIPFVLSKDV*HNVVRC Trigger: GCACCTGACCACATTGTGCAACACATCCTTGGACAA...AACGAATGGGATCCCGTCATAGAGTGGGCTGAGAAAAGGTACGGTATGGAGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
||
| CDS-3UTR CAA 90 bp | TGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCCCCAGATCTTGGTCAGCAACATGGATTaGAGCTGGGCCACTACAAAC | + |
|
Preference number: 5 (lower is better) Translates to: CKYTVAVFRHTRRGPQILVSNMD*SWATTN Trigger: GTTTGTAGTGGCCCAGCTCAAATCCATGTTGCTGAC...CAAGATCTGGGGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR CAA 90 bp | CCTCAAGTCAGGCACACTGTGTCTTCAGGGCTTCTCAGGATGCTTCTTTATAAGGTCAGCAACATGGATTaGAGCTGGGCCACTACAAAC | + |
|
Preference number: 5 (lower is better) Translates to: PQVRHTVSSGLLRMLLYKVSNMD*SWATTN Trigger: GTTTGTAGTGGCCCAGCTCAAATCCATGTTGCTGAC...CTTATAAAGAAGCATCCTGAGAAGCCCTGAAGACACAGTGTGCCTGACTTGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS-3UTR CAA 90 bp | AATCAGGCCCAAAGTCAGCAACATGGATTTGAGCTGGGCCACTACAAACTCAATCTTTACTTCGCTGGGTaGGGTTGTCCAAGGATGTGT | + |
|
Preference number: 5 (lower is better) Translates to: NQAQSQQHGFELGHYKLNLYFAG*GCPRMC Trigger: ACACATCCTTGGACAACCCAACCCAGCGAAGTAAAG...ATTGAGTTTGTAGTGGCCCAGCTCAAATCCATGTTGCTGACTTTGGGCCTGATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145532.9 |
||
| CDS TCA 72 bp | CCGGGCCGGAGGCTGCGGAGCTGGCCCCGGCCATACTaGGACGGTGGGGTCACTGAGACGCCGGTCCAAGAG | + |
|
Preference number: 6 (lower is better) Translates to: PGRRLRSWPRPY*DGGVTETPVQE Trigger: CTCTTGGACCGGCGTCTCAGTGACCCCACCGTCTCAGTATGGCCGGGGCCAGCTCCGCAGCCTCCGGCCCGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000108721.9 ENSMUST00000145532.9 ENSMUST00000239016.2 |
||
| CDS CCA 72 bp | AGCTTGTGCTTGACTGTAGAGCTTTCTGAGCAGAGGTaGACAAAAAGGGTGCCAGCAGCAGTGCGAGCCCGC | + |
|
Preference number: 6 (lower is better) Translates to: SLCLTVELSEQR*TKRVPAAVRAR Trigger: GCGGGCTCGCACTGCTGCTGGCACCCTTTTTGTCCACCTCTGCTCAGAAAGCTCTACAGTCAAGCACAAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108721.9 ENSMUST00000239016.2 |
||
| CDS CAA 72 bp | GCCCGGATCAGCTGGTCTTTACTTCGCTGGGTTGGGTaGTCCAAGGATGTGTTGCACAATGTGGTCAGGTGC | + |
|
Preference number: 6 (lower is better) Translates to: ARISWSLLRWVG*SKDVLHNVVRC Trigger: GCACCTGACCACATTGTGCAACACATCCTTGGACAACCCAACCCAGCGAAGTAAAGACCAGCTGATCCGGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108721.9 ENSMUST00000145532.9 ENSMUST00000239016.2 |
||
| CDS CCA 72 bp | AGCTGCCCGGATCAGCTGGTCTTTACTTCGCTGGGTTaGGTTGTCCAAGGATGTGTTGCACAATGTGGTCAG | + |
|
Preference number: 6 (lower is better) Translates to: SCPDQLVFTSLG*VVQGCVAQCGQ Trigger: CTGACCACATTGTGCAACACATCCTTGGACAACCCAACCCAGCGAAGTAAAGACCAGCTGATCCGGGCAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108721.9 ENSMUST00000145532.9 ENSMUST00000239016.2 |
||
| CDS CAA 90 bp | GAAACTTCACAGCTGCCCGGATCAGCTGGTCTTTACTTCGCTGGGTaGGGTTGTCCAAGGATGTGTTGCACAATGTGGTCAGGTGCATGG | + |
|
Preference number: 6 (lower is better) Translates to: ETSQLPGSAGLYFAG*GCPRMCCTMWSGAW Trigger: CCATGCACCTGACCACATTGTGCAACACATCCTTGGACAACCCAACCCAGCGAAGTAAAGACCAGCTGATCCGGGCAGCTGTGAAGTTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108721.9 ENSMUST00000145532.9 ENSMUST00000239016.2 |
||
| CDS CCA 72 bp | TCAGTGTCTAGAAACTTCACAGCTGCCCGGATCAGCTaGTCTTTACTTCGCTGGGTTGGGTTGTCCAAGGAT | + |
|
Preference number: 6 (lower is better) Translates to: SVSRNFTAARIS*SLLRWVGLSKD Trigger: ATCCTTGGACAACCCAACCCAGCGAAGTAAAGACCAGCTGATCCGGGCAGCTGTGAAGTTTCTAGACACTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108721.9 ENSMUST00000145532.9 ENSMUST00000239016.2 |
||
| CDS TCA 72 bp | TGTTGCACAATGTGGTCAGGTGCATGGTGTAGAACTTaGTGGTATCCTGCTGAGAGTCCCATTCAGTGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: CCTMWSGAWCRT*WYPAESPIQWP Trigger: TGGCCACTGAATGGGACTCTCAGCAGGATACCATCAAGTTCTACACCATGCACCTGACCACATTGTGCAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108721.9 ENSMUST00000145532.9 ENSMUST00000239016.2 |
||