RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATP9A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027546

Ensembl transcript IDs: ENSMUST00000029060.11, ENSMUST00000109175.9, ENSMUST00000109176.8, ENSMUST00000109177.8, ENSMUST00000123156.8, ENSMUST00000151610.8, ENSMUST00000156397.8, ENSMUST00000156555.2, ENSMUST00000178504.8

Found 541 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTaGACCGTCCAGCTGAGGCGGCTCGTGCGTGTGGAACTTGACCTC +
Preference number: 1 (lower is better)
Translates to: GAQCRLSEASCASHD*TVQLRRLVRVELDL
Trigger: GAGGTCAAGTTCCACACGCACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
3UTR GCA 90 bp AGAGACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTaGACAGTGACCCCACAAACCTCAGACGGGCCATCCGGTCCCACG +
Preference number: 1 (lower is better)
Translates to: RDFYHMTRGSNHKEA*TVTPQTSDGPSGPT
Trigger: CGTGGGACCGGATGGCCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
3UTR-3UTR TCA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGCTCATGTGCCAGCCATaGCTGCACCGTCCAGCTGAG +
Preference number: 2 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKLMCQP*LHRPAE
Trigger: CTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAG...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
3UTR-3UTR TCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCACTCATGTGCCAGCCATaGCTGCACCGTCCAGCTGAG +
Preference number: 2 (lower is better)
Translates to: APKVLIGTALRPLPPVPPLMCQP*LHRPAE
Trigger: CTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAG...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
3UTR-3UTR TCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCTCATGTGCCAGCCATaGCTGCACCGTCCAGCTGAG +
Preference number: 2 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSLMCQP*LHRPAE
Trigger: CTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAG...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
3UTR-3UTR TCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCACTCATGTGCCAGCCATaGCTGCACCGTCCAGCTGAG +
Preference number: 2 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSLMCQP*LHRPAE
Trigger: CTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAG...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
3UTR TCA 72 bp CACCGTCCAGCTGAGGCGGCTCGTGCGTGTGGAACTTaGCCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGC +
Preference number: 3 (lower is better)
Translates to: HRPAEAARACGT*PPPGRAPEAGG
Trigger: GCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAGCTGGACGGTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
3UTR GCA 72 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTaGACCGTCCAGCTGAGGCGGCTCGTGCGTGTGGAA +
Preference number: 3 (lower is better)
Translates to: CRLSEASCASHD*TVQLRRLVRVE
Trigger: TTCCACACGCACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
3UTR TCA 72 bp AAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTaGGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCC +
Preference number: 3 (lower is better)
Translates to: KPHVPAMTAPSS*GGSCVWNLTSS
Trigger: GGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
3UTR-3UTR CAA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCTCGTGCGTGTGGAACTaGACCTCCTCCTGGGAGAGC +
Preference number: 3 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTSCVWN*TSSWES
Trigger: GCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGA...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
3UTR-3UTR CAA 90 bp CACAGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGTCGTGCGTGTGGAACTaGACCTCCTCCTGGGAGAGC +
Preference number: 3 (lower is better)
Translates to: HSLAPKVLIGTALRPLPPSCVWN*TSSWES
Trigger: GCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGA...CGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
3UTR GCA 72 bp TCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTaGCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAG +
Preference number: 3 (lower is better)
Translates to: SLRFHQCSIPIR*PVSPQRSLMCQ
Trigger: CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
3UTR-3UTR CAA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATTCGTGCGTGTGGAACTaGACCTCCTCCTGGGAGAGC +
Preference number: 3 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHSCVWN*TSSWES
Trigger: GCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGA...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
3UTR-3UTR CAA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAATCGTGCGTGTGGAACTaGACCTCCTCCTGGGAGAGC +
Preference number: 3 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQSCVWN*TSSWES
Trigger: GCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGA...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
3UTR GCA 72 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTaGACAGTGACCCCACAAACCTCAGACGGGCCATCC +
Preference number: 3 (lower is better)
Translates to: YHMTRGSNHKEA*TVTPQTSDGPS
Trigger: GGATGGCCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGTCCACCCGCTTCTTGTaGCGCACGGGCTGCAGCGGG +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALSTRFL*RTGCSG
Trigger: CCCGCTGCAGCCCGTGCGCCACAAGAAGCGGGTGGA...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029060.11
ENSMUST00000109176.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGCGGCCGGCAAAGTGCTaGAGGGCCACCATGACCAGC +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALRPAKC*RATMTS
Trigger: GCTGGTCATGGTGGCCCTGCAGCACTTTGCCGGCCG...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGGCTGCCAGCGAGGCCTaGTTCCCTTCCTTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALAASEA*FPSLPS
Trigger: GGAGGGCAAGGAAGGGAAGCAGGCCTCGCTGGCAGC...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCAGTGCCTGATGCTATaGCGGTGCCGGCCCACAGCG +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRQCLML*RCRPTA
Trigger: CGCTGTGGGCCGGCACCGTCATAGCATCAGGCACTG...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGGGAGCAGGAAGCGGATaGTCTGCAGGTACCAGCGGC +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALGAGSG*SAGTSG
Trigger: GCCGCTGGTACCTGCAGATCATCCGCTTCCTGCTCC...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGGCTGCCAGCGAGGCCTaGTTCCCTTCCTTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRAASEA*FPSLPS
Trigger: GGAGGGCAAGGAAGGGAAGCAGGCCTCGCTGGCAGC...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGGATGGAGAAGTCCGCTaGCAGCGAGGCCTGCTTCCC +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALDGEVR*QRGLLP
Trigger: GGGAAGCAGGCCTCGCTGGCAGCGGACTTCTCCATC...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGGGCTCTCGATCACCGTaGCCACCTTCAGCGAGCGGT +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALGSRSP*PPSASG
Trigger: ACCGCTCGCTGAAGGTGGCCACGGTGATCGAGAGCC...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGCGGTCCCTCGTGACGTaGGCCGGCTGTAGACCTGGG +
Preference number: 4 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKRSLVT*AGCRPG
Trigger: CCCAGGTCTACAGCCGGCTCACGTCACGAGGGACCG...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGACCGTGGGGCCCTTCTaGGCAGGTGGATCCTGGGAT +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRTVGPF*AGGSWD
Trigger: ATCCCAGGATCCACCTGCTCAGAAGGGCCCCACGGT...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGTGTAGCAGGCCAGGCTaGGTAGCTCGGCCACTGTCA +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALCSRPG*VARPLS
Trigger: TGACAGTGGCCGAGCTACTCAGCCTGGCCTGCTACA...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCACCTCATCCGGGCTaGATGCCTGGTACACTCGGC +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRPPHPG*MPGTLG
Trigger: GCCGAGTGTACCAGGCATCCAGCCCGGATGAGGTGG...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGACCACAGCCGGGCACTaGCAGGCCAGTTCCATGAAC +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALTTAGH*QASSMN
Trigger: GTTCATGGAACTGGCCTGCCAGTGCCCGGCTGTGGT...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGACAATCTGGGCCTTCTaGGTTGGGGCACAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALTIWAF*VGAQRQ
Trigger: CTGCCGCTGTGCCCCAACCCAGAAGGCCCAGATTGT...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCTCGTGCAGTGCCTGATGCTATaGCGGTGCCGGCCCACAGCG +
Preference number: 4 (lower is better)
Translates to: SEASCASHDCTVQLRRLVQCLML*RCRPTA
Trigger: CGCTGTGGGCCGGCACCGTCATAGCATCAGGCACTG...CACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCAGCCTGCATGGTGCTaGTGCAGAGGCTCCTGTGGA +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRQPAWC*CRGSCG
Trigger: TCCACAGGAGCCTCTGCATCAGCACCATGCAGGCTG...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGGCAGCGCCCCGTACATaGTGGTGCTCCCTTGATAGA +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALAAPRT*WCSLDR
Trigger: TCTATCAAGGGAGCACCATCATGTACGGGGCGCTGC...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGGTCTCCGCAGGTACTTaGGGACATAGAGGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALVSAGT*GHRGGD
Trigger: GTCTCCCCCTCTATGTCCTCAAGTACCTGCGGAGAC...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCAGGGGTCCTCAGCTaGATGGAGGACTGGTCTCGA +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRPGVLS*MEDWSR
Trigger: TCGAGACCAGTCCTCCATGCAGCTGAGGACCCCTGG...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCGGTCCCGGGGATTTTaGAATCCCTGCGGATCACCC +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRRSRGF*NPCGSP
Trigger: GGGTGATCCGCAGGGATTCCAAAATCCCCGGGACCG...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGTCTGCACTTCGTCCATaGAGTCCAGGCCGTAGGCCA +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALSALRP*SPGRRP
Trigger: TGGCCTACGGCCTGGACTCCATGGACGAAGTGCAGA...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGACAATCTGGGCCTTCTaGGTTGGGGCACAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRTIWAF*VGAQRQ
Trigger: CTGCCGCTGTGCCCCAACCCAGAAGGCCCAGATTGT...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGGTCTCTCCATCCAGCTaGTCCGTGCGCAAGAAGCAA +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALVSPSS*SVRKKQ
Trigger: TTGCTTCTTGCGCACGGATCAGCTGGATGGAGAGAC...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGCCCCTACTGCACAGGTaGGCTTCCCGGTGCGTTCCT +
Preference number: 4 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKPLLHR*ASRCVP
Trigger: AGGAACGCACCGGGAAGCTCACCTGTGCAGTAGGGG...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGATCTCTGGGACGAACTaGGAGCAGGCGAGAAGCAGG +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRISGTN*EQARSR
Trigger: CCTGCTTCTCGCCTGCTCGCAGTTCGTCCCAGAGAT...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCCGGCAAAGTGCTaGAGGGCCACCATGACCAGC +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRRPAKC*RATMTS
Trigger: GCTGGTCATGGTGGCCCTGCAGCACTTTGCCGGCCG...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGGCTGCTCAGGAATTGTaGTGGAACGAACCACGGTCC +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALAAQEL*WNEPRS
Trigger: GGACCGTGGTTCGTTCCAGCACAATTCCTGAGCAGC...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGGTGCGTTCTTGGCTGTaGACGTGGCTGTCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRVRSWL*TWLSPA
Trigger: AGCTGGAGACAGCCACGTGCACAGCCAAGAACGCAC...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCACCTGCTTCCCTTCCTTaGCCTCCACGCCCACGCCGC +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPPASLP*PPRPRR
Trigger: GCGGCGTGGGCGTGGAGGGCAAGGAAGGGAAGCAGG...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGCCTGCTTCCCTTCCTTaGCCTCCACGCCCACGCCGC +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQPASLP*PPRPRR
Trigger: GCGGCGTGGGCGTGGAGGGCAAGGAAGGGAAGCAGG...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGACTGTCATGAGCCAGTaGCACGTCTGGATGGTGAGC +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALTVMSQ*HVWMVS
Trigger: GCTCACCATCCAGACGTGGCACTGGCTCATGACAGT...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTCCACCCGCTTCTTGTaGCGCACGGGCTGCAGCGGG +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDSTRFL*RTGCSG
Trigger: CCCGCTGCAGCCCGTGCGCCACAAGAAGCGGGTGGA...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029060.11
ENSMUST00000109176.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGGCATTCAGCTCCAGGTaGGCCTCCCCGCGGTTGGTC +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRAFSSR*ASPRLV
Trigger: GACCAACCGCGGGGAGGCCCACCTGGAGCTGAATGC...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGAGCAGCCGAACAATCTaGGCCTTCTGGGTTGGGGCA +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRSSRTI*AFWVGA
Trigger: TGCCCCAACCCAGAAGGCCCAGATTGTTCGGCTGCT...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CACAGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGCGGTCCCTCGTGACGTaGGCCGGCTGTAGACCTGGG +
Preference number: 4 (lower is better)
Translates to: HSLAPKVLIGTALRPLPPRSLVT*AGCRPG
Trigger: CCCAGGTCTACAGCCGGCTCACGTCACGAGGGACCG...CGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGCACTGTCTTCCCTGGTaGAAGTCCCCAGGAAGTTGT +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALHCLPW*KSPGSC
Trigger: ACAACTTCCTGGGGACTTTCACCAGGGAAGACAGTG...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCCAGTGCCTGATGCTATaGCGGTGCCGGCCCACAGCG +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTQCLML*RCRPTA
Trigger: CGCTGTGGGCCGGCACCGTCATAGCATCAGGCACTG...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACCAGTGCCTGATGCTATaGCGGTGCCGGCCCACAGCG +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDQCLML*RCRPTA
Trigger: CGCTGTGGGCCGGCACCGTCATAGCATCAGGCACTG...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGTTCTGGAGCAGGAAGCGGATaGTCTGCAGGTACCAGCGGC +
Preference number: 4 (lower is better)
Translates to: GPSGPTSSPSAQLSTQGSGAGSG*SAGTSG
Trigger: GCCGCTGGTACCTGCAGATCATCCGCTTCCTGCTCC...AGAACCTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGTTCTTCCGAACCTTGGTGGTaGCCGTGGGGCCCTTCTGAG +
Preference number: 4 (lower is better)
Translates to: GPSGPTSSPSAQLSTQGSSEPWW*PWGPSE
Trigger: CTCAGAAGGGCCCCACGGTCACCACCAAGGTTCGGA...AGAACCTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGATTCCTGGATCATGCTaGCGTCATTGCCTCCGTCCC +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRIPGSC*RHCLRP
Trigger: GGGACGGAGGCAATGACGTCAGCATGATCCAGGAAT...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGTCGGATCTCCTCTACTaGCTCACGGATGATGGTGAC +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALSDLLY*LTDDGD
Trigger: GTCACCATCATCCGTGAGGCAGTAGAGGAGATCCGA...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGCGGCCGGCAAAGTGCTaGAGGGCCACCATGACCAGC +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQRPAKC*RATMTS
Trigger: GCTGGTCATGGTGGCCCTGCAGCACTTTGCCGGCCG...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGAGGAAGCGGATGATCTaGAGGTACCAGCGGCCGGCA +
Preference number: 4 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKRKRMI*RYQRPA
Trigger: TGCCGGCCGCTGGTACCTGCAGATCATCCGCTTCCT...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGCTGCCAGCGAGGCCTaGTTCCCTTCCTTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPAASEA*FPSLPS
Trigger: GGAGGGCAAGGAAGGGAAGCAGGCCTCGCTGGCAGC...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACGCTGCCAGCGAGGCCTaGTTCCCTTCCTTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDAASEA*FPSLPS
Trigger: GGAGGGCAAGGAAGGGAAGCAGGCCTCGCTGGCAGC...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGGATGGAGAAGTCCGCTaGCAGCGAGGCCTGCTTCCC +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRDGEVR*QRGLLP
Trigger: GGGAAGCAGGCCTCGCTGGCAGCGGACTTCTCCATC...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCGCCTTCACAGCCTCGTaGACACGGCTGCTCATGGTC +
Preference number: 4 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSAFTAS*TRLLMV
Trigger: GACCATGAGCAGCCGTGTCCACGAGGCTGTGAAGGC...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGTTCTTCCGGGCTGGATGCCTaGTACACTCGGCAGGAGTCC +
Preference number: 4 (lower is better)
Translates to: GPSGPTSSPSAQLSTQGSSGLDA*YTRQES
Trigger: GGACTCCTGCCGAGTGTACCAGGCATCCAGCCCGGA...AGAACCTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGTCCGGGCTGGATGCCTaGTACACTCGGCAGGAGTCC +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRSGLDA*YTRQES
Trigger: GGACTCCTGCCGAGTGTACCAGGCATCCAGCCCGGA...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCTCGTGAGCTGCATGGAGGACTaGTCTCGACCCACCAGCGTC +
Preference number: 4 (lower is better)
Translates to: SEASCASHDCTVQLRRLVSCMED*SRPTSV
Trigger: GACGCTGGTGGGTCGAGACCAGTCCTCCATGCAGCT...CACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGGGTCCTCAGCTGCATaGAGGACTGGTCTCGACCCA +
Preference number: 4 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKGSSAA*RTGLDP
Trigger: TGGGTCGAGACCAGTCCTCCATGCAGCTGAGGACCC...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCTCGTGGGGCCTCCCCGCGGTTaGTCACCAGTCGGAAAACAT +
Preference number: 4 (lower is better)
Translates to: SEASCASHDCTVQLRRLVGPPRG*SPVGKH
Trigger: ATGTTTTCCGACTGGTGACCAACCGCGGGGAGGCCC...CACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACGCATTCAGCTCCAGGTaGGCCTCCCCGCGGTTGGTC +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDAFSSR*ASPRLV
Trigger: GACCAACCGCGGGGAGGCCCACCTGGAGCTGAATGC...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGGCATTCAGCTCCAGGTaGGCCTCCCCGCGGTTGGTC +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQAFSSR*ASPRLV
Trigger: GACCAACCGCGGGGAGGCCCACCTGGAGCTGAATGC...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGCATTCAGCTCCAGGTaGGCCTCCCCGCGGTTGGTC +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPAFSSR*ASPRLV
Trigger: GACCAACCGCGGGGAGGCCCACCTGGAGCTGAATGC...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCCTTCGAGTAGCTGGGTaGGGAGAACCGTCTCCGCAG +
Preference number: 4 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSLRVAG*GEPSPQ
Trigger: CTGCGGAGACGGTTCTCCCCACCCAGCTACTCGAAG...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCGGTCCCTCGTGACGTaGGCCGGCTGTAGACCTGGG +
Preference number: 4 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVRSLVT*AGCRPG
Trigger: CCCAGGTCTACAGCCGGCTCACGTCACGAGGGACCG...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAGGAGCAGGAAGCGGATaGTCTGCAGGTACCAGCGGC +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPGAGSG*SAGTSG
Trigger: GCCGCTGGTACCTGCAGATCATCCGCTTCCTGCTCC...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCGGAGCAGGAAGCGGATaGTCTGCAGGTACCAGCGGC +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTGAGSG*SAGTSG
Trigger: GCCGCTGGTACCTGCAGATCATCCGCTTCCTGCTCC...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGGGAGCAGGAAGCGGATaGTCTGCAGGTACCAGCGGC +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQGAGSG*SAGTSG
Trigger: GCCGCTGGTACCTGCAGATCATCCGCTTCCTGCTCC...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCCCAGGTGCAGCCGCTTaGACACCATCTCATTCTGGG +
Preference number: 4 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSPGAAA*TPSHSG
Trigger: CCCAGAATGAGATGGTGTTCAAGCGGCTGCACCTGG...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCTCGTGCCAGGTGCAGCCGCTTaGACACCATCTCATTCTGGG +
Preference number: 4 (lower is better)
Translates to: SEASCASHDCTVQLRRLVPGAAA*TPSHSG
Trigger: CCCAGAATGAGATGGTGTTCAAGCGGCTGCACCTGG...CACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAACCGTGGGGCCCTTCTaGGCAGGTGGATCCTGGGAT +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPTVGPF*AGGSWD
Trigger: ATCCCAGGATCCACCTGCTCAGAAGGGCCCCACGGT...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGTCCGAACCTTGGTGGTaGCCGTGGGGCCCTTCTGAG +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQSEPWW*PWGPSE
Trigger: CTCAGAAGGGCCCCACGGTCACCACCAAGGTTCGGA...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCACCCCTACTGCACAGGTaGGCTTCCCGGTGCGTTCCT +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPPLLHR*ASRCVP
Trigger: AGGAACGCACCGGGAAGCTCACCTGTGCAGTAGGGG...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACCCCCTACTGCACAGGTaGGCTTCCCGGTGCGTTCCT +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDPLLHR*ASRCVP
Trigger: AGGAACGCACCGGGAAGCTCACCTGTGCAGTAGGGG...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCAGCCTGCATGGTGCTaGTGCAGAGGCTCCTGTGGA +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRQPAWC*CRGSCG
Trigger: TCCACAGGAGCCTCTGCATCAGCACCATGCAGGCTG...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCGCAGCGCCCCGTACATaGTGGTGCTCCCTTGATAGA +
Preference number: 4 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSAAPRT*WCSLDR
Trigger: TCTATCAAGGGAGCACCATCATGTACGGGGCGCTGC...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAGCTCGGCCACTGTCATaGGCCAGTGCCACGTCTGGA +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPARPLS*ASATSG
Trigger: TCCAGACGTGGCACTGGCTCATGACAGTGGCCGAGC...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCAGCTCGGCCACTGTCATaGGCCAGTGCCACGTCTGGA +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPARPLS*ASATSG
Trigger: TCCAGACGTGGCACTGGCTCATGACAGTGGCCGAGC...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGCTCGGCCACTGTCATaGGCCAGTGCCACGTCTGGA +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPARPLS*ASATSG
Trigger: TCCAGACGTGGCACTGGCTCATGACAGTGGCCGAGC...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGGGATTTTGGAATCCCTaGGGATCACCCAGCTGTACA +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALGFWNP*GSPSCT
Trigger: TGTACAGCTGGGTGATCCGCAGGGATTCCAAAATCC...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCGTGCGTTCTTGGCTGTaGACGTGGCTGTCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSVRSWL*TWLSPA
Trigger: AGCTGGAGACAGCCACGTGCACAGCCAAGAACGCAC...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCTGCTTCCCTTCCTTaGCCTCCACGCCCACGCCGC +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSPASLP*PPRPRR
Trigger: GCGGCGTGGGCGTGGAGGGCAAGGAAGGGAAGCAGG...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGATGGAGAAGTCCGCTaGCAGCGAGGCCTGCTTCCC +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPDGEVR*QRGLLP
Trigger: GGGAAGCAGGCCTCGCTGGCAGCGGACTTCTCCATC...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCTTTCGAGGGTACCGCTaGTCCCTCTTCTCGGGGTGT +
Preference number: 4 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSFRGYR*SLFSGC
Trigger: ACACCCCGAGAAGAGGGACCAGCGGTACCCTCGAAA...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGTCAGCAGGGACCCGCTaGTTCTTTTCCACAAGGATG +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRSAGTR*FFSTRM
Trigger: CATCCTTGTGGAAAAGAACCAGCGGGTCCCTGCTGA...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGGGACACGGCTGCTCATaGTCCTCCGAACCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRGHGCS*SSEPWW
Trigger: CCACCAAGGTTCGGAGGACCATGAGCAGCCGTGTCC...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCTCCGGGCTGGATGCCTaGTACACTCGGCAGGAGTCC +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTSGLDA*YTRQES
Trigger: GGACTCCTGCCGAGTGTACCAGGCATCCAGCCCGGA...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCACCACCTCATCCGGGCTaGATGCCTGGTACACTCGGC +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPPPHPG*MPGTLG
Trigger: GCCGAGTGTACCAGGCATCCAGCCCGGATGAGGTGG...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGCCACCTCATCCGGGCTaGATGCCTGGTACACTCGGC +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQPPHPG*MPGTLG
Trigger: GCCGAGTGTACCAGGCATCCAGCCCGGATGAGGTGG...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGGGGTCCTCAGCTGCATaGAGGACTGGTCTCGACCCA +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRGSSAA*RTGLDP
Trigger: TGGGTCGAGACCAGTCCTCCATGCAGCTGAGGACCC...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGAGCCAGTCGTTGTACTaGACAATGCCAGCCATGACG +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRSQSLY*TMPAMT
Trigger: CGTCATGGCTGGCATTGTCCAGTACAACGACTGGCT...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCAGGCTCTCGATCACCGTaGCCACCTTCAGCGAGCGGT +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPGSRSP*PPSASG
Trigger: ACCGCTCGCTGAAGGTGGCCACGGTGATCGAGAGCC...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCGGCTCTCGATCACCGTaGCCACCTTCAGCGAGCGGT +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTGSRSP*PPSASG
Trigger: ACCGCTCGCTGAAGGTGGCCACGGTGATCGAGAGCC...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGGGGCCTCCCCGCGGTTaGTCACCAGTCGGAAAACAT +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRGPPRG*SPVGKH
Trigger: ATGTTTTCCGACTGGTGACCAACCGCGGGGAGGCCC...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGACCACAGCCGGGCACTaGCAGGCCAGTTCCATGAAC +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRTTAGH*QASSMN
Trigger: GTTCATGGAACTGGCCTGCCAGTGCCCGGCTGTGGT...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCTCGTGAGCAGCCGAACAATCTaGGCCTTCTGGGTTGGGGCA +
Preference number: 4 (lower is better)
Translates to: SEASCASHDCTVQLRRLVSSRTI*AFWVGA
Trigger: TGCCCCAACCCAGAAGGCCCAGATTGTTCGGCTGCT...CACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGACATCGATGAACTCATaGAGGAACACCAGGGAGGCA +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALTSMNS*RNTREA
Trigger: TGCCTCCCTGGTGTTCCTCCATGAGTTCATCGATGT...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGTTCTCTTCGAGTAGCTGGGTaGGGAGAACCGTCTCCGCAG +
Preference number: 4 (lower is better)
Translates to: GPSGPTSSPSAQLSTQGSLRVAG*GEPSPQ
Trigger: CTGCGGAGACGGTTCTCCCCACCCAGCTACTCGAAG...AGAACCTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGGCTGGGTGTAAATGCTaGAGATGTGACTCTGCACTT +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALAGCKC*RCDSAL
Trigger: AAGTGCAGAGTCACATCTTCAGCATTTACACCCAGC...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCTTCATGTAGAACGTaGTTTCCCCCGTGGACTCAT +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRPSCRT*FPPWTH
Trigger: ATGAGTCCACGGGGGAAATCACGTTCTACATGAAGG...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCGGTACTGCTCCTCTGTaGGGGACTTCTTGGCTACCA +
Preference number: 4 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSGTAPL*GTSWLP
Trigger: TGGTAGCCAAGAAGTCCCTCACAGAGGAGCAGTACC...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGCGTACTCATAGTATTTaGGGCAAACCTCCAGGGAGT +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALRTHSI*GKPPGS
Trigger: ACTCCCTGGAGGTTTGCCTCAAATACTATGAGTACG...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCCCTACTGCACAGGTaGGCTTCCCGGTGCGTTCCT +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQPLLHR*ASRCVP
Trigger: AGGAACGCACCGGGAAGCTCACCTGTGCAGTAGGGG...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCACAGCCTGCATGGTGCTaGTGCAGAGGCTCCTGTGGA +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPQPAWC*CRGSCG
Trigger: TCCACAGGAGCCTCTGCATCAGCACCATGCAGGCTG...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCCAGCCTGCATGGTGCTaGTGCAGAGGCTCCTGTGGA +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTQPAWC*CRGSCG
Trigger: TCCACAGGAGCCTCTGCATCAGCACCATGCAGGCTG...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCTGTAGCAGGCCAGGCTaGGTAGCTCGGCCACTGTCA +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTCSRPG*VARPLS
Trigger: TGACAGTGGCCGAGCTACTCAGCCTGGCCTGCTACA...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCATGTAGCAGGCCAGGCTaGGTAGCTCGGCCACTGTCA +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPCSRPG*VARPLS
Trigger: TGACAGTGGCCGAGCTACTCAGCCTGGCCTGCTACA...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGTAGCAGGCCAGGCTaGGTAGCTCGGCCACTGTCA +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPCSRPG*VARPLS
Trigger: TGACAGTGGCCGAGCTACTCAGCCTGGCCTGCTACA...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCAAGGAAGCGGATGATCTaGAGGTACCAGCGGCCGGCA +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPRKRMI*RYQRPA
Trigger: TGCCGGCCGCTGGTACCTGCAGATCATCCGCTTCCT...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCCAGGAGTCCTCAAACTaGTTCTCAGCCTCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSQESSN*FSASAW
Trigger: CCAGGCTGAGGCTGAGAAGCAGTTTGAGGACTCCTG...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGGATGGAGAAGTCCGCTaGCAGCGAGGCCTGCTTCCC +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQDGEVR*QRGLLP
Trigger: GGGAAGCAGGCCTCGCTGGCAGCGGACTTCTCCATC...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp AGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCTCGTGACTGTCATGAGCCAGTaGCACGTCTGGATGGTGAGC +
Preference number: 4 (lower is better)
Translates to: SEASCASHDCTVQLRRLVTVMSQ*HVWMVS
Trigger: GCTCACCATCCAGACGTGGCACTGGCTCATGACAGT...CACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGGGACACGGCTGCTCATaGTCCTCCGAACCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQGHGCS*SSEPWW
Trigger: CCACCAAGGTTCGGAGGACCATGAGCAGCCGTGTCC...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCGCCTTCACAGCCTCGTaGACACGGCTGCTCATGGTC +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTAFTAS*TRLLMV
Trigger: GACCATGAGCAGCCGTGTCCACGAGGCTGTGAAGGC...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAGCCTTCACAGCCTCGTaGACACGGCTGCTCATGGTC +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPAFTAS*TRLLMV
Trigger: GACCATGAGCAGCCGTGTCCACGAGGCTGTGAAGGC...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGCCTTCACAGCCTCGTaGACACGGCTGCTCATGGTC +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPAFTAS*TRLLMV
Trigger: GACCATGAGCAGCCGTGTCCACGAGGCTGTGAAGGC...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CACAGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGTCCGGGCTGGATGCCTaGTACACTCGGCAGGAGTCC +
Preference number: 4 (lower is better)
Translates to: HSLAPKVLIGTALRPLPPSGLDA*YTRQES
Trigger: GGACTCCTGCCGAGTGTACCAGGCATCCAGCCCGGA...CGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAGCTGCATGGAGGACTaGTCTCGACCCACCAGCGTC +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTSCMED*SRPTSV
Trigger: GACGCTGGTGGGTCGAGACCAGTCCTCCATGCAGCT...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCAAGCTGCATGGAGGACTaGTCTCGACCCACCAGCGTC +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPSCMED*SRPTSV
Trigger: GACGCTGGTGGGTCGAGACCAGTCCTCCATGCAGCT...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGGGTCCTCAGCTGCATaGAGGACTGGTCTCGACCCA +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPGSSAA*RTGLDP
Trigger: TGGGTCGAGACCAGTCCTCCATGCAGCTGAGGACCC...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAGGGTCCTCAGCTGCATaGAGGACTGGTCTCGACCCA +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPGSSAA*RTGLDP
Trigger: TGGGTCGAGACCAGTCCTCCATGCAGCTGAGGACCC...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGGTGAGATTCAGGACCTaGTCACCAGGGGTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRVRFRT*SPGVLS
Trigger: GCTGAGGACCCCTGGTGACCAGGTCCTGAATCTCAC...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCGGGCCTCCCCGCGGTTaGTCACCAGTCGGAAAACAT +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTGPPRG*SPVGKH
Trigger: ATGTTTTCCGACTGGTGACCAACCGCGGGGAGGCCC...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGACCACAGCCGGGCACTaGCAGGCCAGTTCCATGAAC +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQTTAGH*QASSMN
Trigger: GTTCATGGAACTGGCCTGCCAGTGCCCGGCTGTGGT...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACACCACAGCCGGGCACTaGCAGGCCAGTTCCATGAAC +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDTTAGH*QASSMN
Trigger: GTTCATGGAACTGGCCTGCCAGTGCCCGGCTGTGGT...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAACAATCTGGGCCTTCTaGGTTGGGGCACAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPTIWAF*VGAQRQ
Trigger: CTGCCGCTGTGCCCCAACCCAGAAGGCCCAGATTGT...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCGTCCCCAGGAAGTTGTaGATGTCGATGTTGGGCTCT +
Preference number: 4 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSVPRKL*MSMLGS
Trigger: AGAGCCCAACATCGACATTCACAACTTCCTGGGGAC...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGTTCCTGTCTTGTCTGTaGGCAAGTACGAAATCCTGC +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRFLSCL*ASTKSC
Trigger: GCAGGATTTCGTACTTGCTCACAGACAAGACAGGAA...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCACCAGGTGCAGCCGCTTaGACACCATCTCATTCTGGG +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPPGAAA*TPSHSG
Trigger: CCCAGAATGAGATGGTGTTCAAGCGGCTGCACCTGG...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCACCGTGGGGCCCTTCTaGGCAGGTGGATCCTGGGAT +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSTVGPF*AGGSWD
Trigger: ATCCCAGGATCCACCTGCTCAGAAGGGCCCCACGGT...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTTCCGAACCTTGGTGGTaGCCGTGGGGCCCTTCTGAG +
Preference number: 4 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVSEPWW*PWGPSE
Trigger: CTCAGAAGGGCCCCACGGTCACCACCAAGGTTCGGA...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCGGACAATGCCAGCCATaGCGACGTCTGCTCCCTTCA +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTGQCQP*RRLLPS
Trigger: TGAAGGGAGCAGACGTCGTCATGGCTGGCATTGTCC...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGGACAATGCCAGCCATaGCGACGTCTGCTCCCTTCA +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPGQCQP*RRLLPS
Trigger: TGAAGGGAGCAGACGTCGTCATGGCTGGCATTGTCC...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCGTACTCATAGTATTTaGGGCAAACCTCCAGGGAGT +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRRTHSI*GKPPGS
Trigger: ACTCCCTGGAGGTTTGCCTCAAATACTATGAGTACG...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGAGGAAGCGGATGATCTaGAGGTACCAGCGGCCGGCA +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQRKRMI*RYQRPA
Trigger: TGCCGGCCGCTGGTACCTGCAGATCATCCGCTTCCT...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGTTCTGCTGCTCAGGAATTGTaGTGGAACGAACCACGGTCC +
Preference number: 4 (lower is better)
Translates to: GPSGPTSSPSAQLSTQGSAAQEL*WNEPRS
Trigger: GGACCGTGGTTCGTTCCAGCACAATTCCTGAGCAGC...AGAACCTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCAGTGCGTTCTTGGCTGTaGACGTGGCTGTCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPVRSWL*TWLSPA
Trigger: AGCTGGAGACAGCCACGTGCACAGCCAAGAACGCAC...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGTCTGGTCACCAGATGTaGGTTCTTGGCTGTGCACGT +
Preference number: 4 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKSGHQM*VLGCAR
Trigger: ACGTGCACAGCCAAGAACGCACATCTGGTGACCAGA...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCATTTCGAGGGTACCGCTaGTCCCTCTTCTCGGGGTGT +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPFRGYR*SLFSGC
Trigger: ACACCCCGAGAAGAGGGACCAGCGGTACCCTCGAAA...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGTCAGCAGGGACCCGCTaGTTCTTTTCCACAAGGATG +
Preference number: 4 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKSAGTR*FFSTRM
Trigger: CATCCTTGTGGAAAAGAACCAGCGGGTCCCTGCTGA...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CACAGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGCGGTCCCGGGGATTTTaGAATCCCTGCGGATCACCC +
Preference number: 4 (lower is better)
Translates to: HSLAPKVLIGTALRPLPPRSRGF*NPCGSP
Trigger: GGGTGATCCGCAGGGATTCCAAAATCCCCGGGACCG...CGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGCTCAGGAATTGTGCTaGAACGAACCACGGTCCCGG +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPAQELC*NEPRSR
Trigger: CCGGGACCGTGGTTCGTTCCAGCACAATTCCTGAGC...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAGCTCAGGAATTGTGCTaGAACGAACCACGGTCCCGG +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPAQELC*NEPRSR
Trigger: CCGGGACCGTGGTTCGTTCCAGCACAATTCCTGAGC...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACGCTCAGGAATTGTGCTaGAACGAACCACGGTCCCGG +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDAQELC*NEPRSR
Trigger: CCGGGACCGTGGTTCGTTCCAGCACAATTCCTGAGC...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCTCTGCACTTCGTCCATaGAGTCCAGGCCGTAGGCCA +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTSALRP*SPGRRP
Trigger: TGGCCTACGGCCTGGACTCCATGGACGAAGTGCAGA...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGGGACACGGCTGCTCATaGTCCTCCGAACCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQGHGCS*SSEPWW
Trigger: CCACCAAGGTTCGGAGGACCATGAGCAGCCGTGTCC...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGACACTTTCTGTCCACTaGACCAGAGCCACCTCATCC +
Preference number: 4 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKTLSVH*TRATSS
Trigger: GGATGAGGTGGCTCTGGTCCAGTGGACAGAAAGTGT...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGGTGAGATTCAGGACCTaGTCACCAGGGGTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQVRFRT*SPGVLS
Trigger: GCTGAGGACCCCTGGTGACCAGGTCCTGAATCTCAC...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCCGGGCTTCAAAGTCTTaGTACTGCTCCTCTGTGAGG +
Preference number: 4 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSRASKS*YCSSVR
Trigger: CCTCACAGAGGAGCAGTACCAAGACTTTGAAGCCCG...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGTTCTCCAGATGTGCGTTCTTaGCTGTGCACGTGGCTGTCT +
Preference number: 4 (lower is better)
Translates to: GPSGPTSSPSAQLSTQGSPDVRS*LCTWLS
Trigger: AGACAGCCACGTGCACAGCCAAGAACGCACATCTGG...AGAACCTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCTCGTGCCGCAGTCGGATTCCTaGATCATGCTGACGTCATTG +
Preference number: 4 (lower is better)
Translates to: SEASCASHDCTVQLRRLVPQSDS*IMLTSL
Trigger: CAATGACGTCAGCATGATCCAGGAATCCGACTGCGG...CACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCCCGAGATGCTTGAACTaGGTGATGGAGAAGTCCGCT +
Preference number: 4 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSPRCLN*VMEKSA
Trigger: AGCGGACTTCTCCATCACCCAGTTCAAGCATCTCGG...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CACAGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGCTTCGAGTAGCTGGGTaGGGAGAACCGTCTCCGCAG +
Preference number: 4 (lower is better)
Translates to: HSLAPKVLIGTALRPLPPLRVAG*GEPSPQ
Trigger: CTGCGGAGACGGTTCTCCCCACCCAGCTACTCGAAG...CGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCTTCGAGTAGCTGGGTaGGGAGAACCGTCTCCGCAG +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQLRVAG*GEPSPQ
Trigger: CTGCGGAGACGGTTCTCCCCACCCAGCTACTCGAAG...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGCGGTCCCTCGTGACGTaGGCCGGCTGTAGACCTGGG +
Preference number: 4 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGRSLVT*AGCRPG
Trigger: CCCAGGTCTACAGCCGGCTCACGTCACGAGGGACCG...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCTCTTTTCCACAAGGATaGGGTCTCCCACCTGGATGT +
Preference number: 4 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSSFPQG*GLPPGC
Trigger: ACATCCAGGTGGGAGACCTCATCCTTGTGGAAAAGA...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCGTCTCTCCATCCAGCTaGTCCGTGCGCAAGAAGCAA +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTVSPSS*SVRKKQ
Trigger: TTGCTTCTTGCGCACGGATCAGCTGGATGGAGAGAC...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAGTCTCTCCATCCAGCTaGTCCGTGCGCAAGAAGCAA +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPVSPSS*SVRKKQ
Trigger: TTGCTTCTTGCGCACGGATCAGCTGGATGGAGAGAC...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCCCTTCATGTAGAACGTaGTTTCCCCCGTGGACTCAT +
Preference number: 4 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSPSCRT*FPPWTH
Trigger: ATGAGTCCACGGGGGAAATCACGTTCTACATGAAGG...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGGGACAATGCCAGCCATaGCGACGTCTGCTCCCTTCA +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQGQCQP*RRLLPS
Trigger: TGAAGGGAGCAGACGTCGTCATGGCTGGCATTGTCC...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACGGTACTGCTCCTCTGTaGGGGACTTCTTGGCTACCA +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDGTAPL*GTSWLP
Trigger: TGGTAGCCAAGAAGTCCCTCACAGAGGAGCAGTACC...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGATTCCTGGATCATGCTaGCGTCATTGCCTCCGTCCC +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQIPGSC*RHCLRP
Trigger: GGGACGGAGGCAATGACGTCAGCATGATCCAGGAAT...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCAATTCCTGGATCATGCTaGCGTCATTGCCTCCGTCCC +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPIPGSC*RHCLRP
Trigger: GGGACGGAGGCAATGACGTCAGCATGATCCAGGAAT...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAGCAGCGCCCCGTACATaGTGGTGCTACCTTGATAGA +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPAAPRT*WCYLDR
Trigger: TCTATCAAGGTAGCACCATCATGTACGGGGCGCTGC...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp AGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCTCGTGGGATTTTGGAATCCCTaGGGATCACCCAGCTGTACA +
Preference number: 4 (lower is better)
Translates to: SEASCASHDCTVQLRRLVGFWNP*GSPSCT
Trigger: TGTACAGCTGGGTGATCCGCAGGGATTCCAAAATCC...CACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCGAAATCCTGCCCAGCTaGTCAGGAATTGTGCTGGAA +
Preference number: 4 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSEILPS*SGIVLE
Trigger: TTCCAGCACAATTCCTGAGCAGCTGGGCAGGATTTC...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGCAAGTACGAAATCCTaGCCAGCTGCTCAGGAATTG +
Preference number: 4 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKASTKS*PAAQEL
Trigger: CAATTCCTGAGCAGCTGGGCAGGATTTCGTACTTGC...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp AGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCTCGTGGCAAGTACGAAATCCTaGCCAGCTGCTCAGGAATTG +
Preference number: 4 (lower is better)
Translates to: SEASCASHDCTVQLRRLVASTKS*PAAQEL
Trigger: CAATTCCTGAGCAGCTGGGCAGGATTTCGTACTTGC...CACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGCAGGAGTCCTCAAACTaGTTCTCAGCCTCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQQESSN*FSASAW
Trigger: CCAGGCTGAGGCTGAGAAGCAGTTTGAGGACTCCTG...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCACAGGAGTCCTCAAACTaGTTCTCAGCCTCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPQESSN*FSASAW
Trigger: CCAGGCTGAGGCTGAGAAGCAGTTTGAGGACTCCTG...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCAGGGGTCCTCAGCTaGATGGAGGACTGGTCTCGA +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSPGVLS*MEDWSR
Trigger: TCGAGACCAGTCCTCCATGCAGCTGAGGACCCCTGG...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGTCTGGTCACCAGATGTaGGTTCTTGGCTGTGCACGT +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRSGHQM*VLGCAR
Trigger: ACGTGCACAGCCAAGAACGCACATCTGGTGACCAGA...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGCCTGCTTCCCTTCCTTaGCCTCCACGCCCACGCCGC +
Preference number: 4 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGPASLP*PPRPRR
Trigger: GCGGCGTGGGCGTGGAGGGCAAGGAAGGGAAGCAGG...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGGGATGTGAAGGAGATTaGCACGATGTGTACAAACTC +
Preference number: 4 (lower is better)
Translates to: LRRLVRVELDLLLGERRRGCEGD*HDVYKL
Trigger: GAGTTTGTACACATCGTGGCAATCTCCTTCACATCC...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCGGTCCCGGGGATTTTaGAATCCCTGCGGATCACCC +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSRSRGF*NPCGSP
Trigger: GGGTGATCCGCAGGGATTCCAAAATCCCCGGGACCG...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCGGTCCCGGGGATTTTaGAATCCCTGCGGATCACCC +
Preference number: 4 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVRSRGF*NPCGSP
Trigger: GGGTGATCCGCAGGGATTCCAAAATCCCCGGGACCG...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGTCTGCACTTCGTCCATaGAGTCCAGGCCGTAGGCCA +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQSALRP*SPGRRP
Trigger: TGGCCTACGGCCTGGACTCCATGGACGAAGTGCAGA...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCGGACACGGCTGCTCATaGTCCTCCGAACCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSGHGCS*SSEPWW
Trigger: CCACCAAGGTTCGGAGGACCATGAGCAGCCGTGTCC...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTTCTCAGCCTCAGCCTaGTCCGTCACACCATTGGAC +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDFSASA*SVTPLD
Trigger: GTCCAATGGTGTGACGGACCAGGCTGAGGCTGAGAA...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCATTCTCAGCCTCAGCCTaGTCCGTCACACCATTGGAC +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPFSASA*SVTPLD
Trigger: GTCCAATGGTGTGACGGACCAGGCTGAGGCTGAGAA...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGACACTTTCTGTCCACTaGACCAGAGCCACCTCATCC +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRTLSVH*TRATSS
Trigger: GGATGAGGTGGCTCTGGTCCAGTGGACAGAAAGTGT...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTAGCTGCATGGAGGACTaGTCTCGACCCACCAGCGTC +
Preference number: 4 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVSCMED*SRPTSV
Trigger: GACGCTGGTGGGTCGAGACCAGTCCTCCATGCAGCT...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CACAGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTGAGATTCAGGACCTaGTCACCAGGGGTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: HSLAPKVLIGTALRPLPPVRFRT*SPGVLS
Trigger: GCTGAGGACCCCTGGTGACCAGGTCCTGAATCTCAC...CGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACCCAGATGTGCGTTCTTaGCTGTGCACGTGGCTGTCT +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDPDVRS*LCTWLS
Trigger: AGACAGCCACGTGCACAGCCAAGAACGCACATCTGG...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCCCAGATGTGCGTTCTTaGCTGTGCACGTGGCTGTCT +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTPDVRS*LCTWLS
Trigger: AGACAGCCACGTGCACAGCCAAGAACGCACATCTGG...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTACCACAGCCGGGCACTaGCAGGCCAGTTCCATGAAC +
Preference number: 4 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVTTAGH*QASSMN
Trigger: GTTCATGGAACTGGCCTGCCAGTGCCCGGCTGTGGT...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCTTCGAGTAGCTGGGTaGGGAGAACCGTCTCCGCAG +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSLRVAG*GEPSPQ
Trigger: CTGCGGAGACGGTTCTCCCCACCCAGCTACTCGAAG...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGTTCTTCCCACCTGGATGTTTaGACTCTTCACCTTCACGGT +
Preference number: 4 (lower is better)
Translates to: GPSGPTSSPSAQLSTQGSSHLDV*TLHLHG
Trigger: ACCGTGAAGGTGAAGAGTTCAAACATCCAGGTGGGA...AGAACCTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGTCCCACCTGGATGTTTaGACTCTTCACCTTCACGGT +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRSHLDV*TLHLHG
Trigger: ACCGTGAAGGTGAAGAGTTCAAACATCCAGGTGGGA...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGTCTTTTCCACAAGGATaGGGTCTCCCACCTGGATGT +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRSFPQG*GLPPGC
Trigger: ACATCCAGGTGGGAGACCTCATCCTTGTGGAAAAGA...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGAGAGCCGTTTTTCTCTaGCGTCCTCAGGAAGATCAT +
Preference number: 4 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKRAVFL*RPQEDH
Trigger: ATGATCTTCCTGAGGACGTCAGAGAAAAACGGCTCT...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGGTCTCTCCATCCAGCTaGTCCGTGCGCAAGAAGCAA +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQVSPSS*SVRKKQ
Trigger: TTGCTTCTTGCGCACGGATCAGCTGGATGGAGAGAC...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCAGTCCCCAGGAAGTTGTaGATGTCGATGTTGGGCTCT +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPVPRKL*MSMLGS
Trigger: AGAGCCCAACATCGACATTCACAACTTCCTGGGGAC...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCACACTGTCTTCCCTGGTaGAAGTCCCCAGGAAGTTGT +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPHCLPW*KSPGSC
Trigger: ACAACTTCCTGGGGACTTTCACCAGGGAAGACAGTG...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCCAAACAGGATCTTGGTaGGGCAGTTCACCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTQTGSW*GSSPPG
Trigger: ACCTGGAGGTGAACTGCCTCACCAAGATCCTGTTTG...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCTCGTGTTCCTGTCTTGTCTGTaGGCAAGTACGAAATCCTGC +
Preference number: 4 (lower is better)
Translates to: SEASCASHDCTVQLRRLVFLSCL*ASTKSC
Trigger: GCAGGATTTCGTACTTGCTCACAGACAAGACAGGAA...CACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGATTCCTGGATCATGCTaGCGTCATTGCCTCCGTCCC +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQIPGSC*RHCLRP
Trigger: GGGACGGAGGCAATGACGTCAGCATGATCCAGGAAT...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCAGCCTGCATGGTGCTaGTGCAGAGGCTCCTGTGGA +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHQPAWC*CRGSCG
Trigger: TCCACAGGAGCCTCTGCATCAGCACCATGCAGGCTG...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCGCAGCGCCCCGTACATaGTGGTGCTCCCTTGATAGA +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSAAPRT*WCSLDR
Trigger: TCTATCAAGGGAGCACCATCATGTACGGGGCGCTGC...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCATCTCTGGGACGAACTaGGAGCAGGCGAGAAGCAGG +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSISGTN*EQARSR
Trigger: CCTGCTTCTCGCCTGCTCGCAGTTCGTCCCAGAGAT...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATCGGATCTCCTCTACTaGCTCACGGATGATGGTGAC +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPSDLLY*LTDDGD
Trigger: GTCACCATCATCCGTGAGGCAGTAGAGGAGATCCGA...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTCGGATCTCCTCTACTaGCTCACGGATGATGGTGAC +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDSDLLY*LTDDGD
Trigger: GTCACCATCATCCGTGAGGCAGTAGAGGAGATCCGA...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGGCTGCTCAGGAATTGTaGTGGAACGAACCACGGTCC +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQAAQEL*WNEPRS
Trigger: GGACCGTGGTTCGTTCCAGCACAATTCCTGAGCAGC...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCAGGGGTCCTCAGCTaGATGGAGGACTGGTCTCGA +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHPGVLS*MEDWSR
Trigger: TCGAGACCAGTCCTCCATGCAGCTGAGGACCCCTGG...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGTCAAAGTCTTGGTACTaGTCCTCTGTGAGGGACTTC +
Preference number: 4 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKSKSWY*SSVRDF
Trigger: GAAGTCCCTCACAGAGGAGCAGTACCAAGACTTTGA...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGTCTGGTCACCAGATGTaGGTTCTTGGCTGTGCACGT +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQSGHQM*VLGCAR
Trigger: ACGTGCACAGCCAAGAACGCACATCTGGTGACCAGA...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCTCGTGAACACCATCTCATTCTaGGTCAGGGTTCCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: SEASCASHDCTVQLRRLVNTISF*VRVPVL
Trigger: CAAGACAGGAACCCTGACCCAGAATGAGATGGTGTT...CACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATAGCTGCATGGAGGACTaGTCTCGACCCACCAGCGTC +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHSCMED*SRPTSV
Trigger: GACGCTGGTGGGTCGAGACCAGTCCTCCATGCAGCT...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCGTGAGATTCAGGACCTaGTCACCAGGGGTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSVRFRT*SPGVLS
Trigger: GCTGAGGACCCCTGGTGACCAGGTCCTGAATCTCAC...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAAGCCAGTCGTTGTACTaGACAATGCCAGCCATGACG +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPSQSLY*TMPAMT
Trigger: CGTCATGGCTGGCATTGTCCAGTACAACGACTGGCT...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACCGGGCTTCAAAGTCTTaGTACTGCTCCTCTGTGAGG +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDRASKS*YCSSVR
Trigger: CCTCACAGAGGAGCAGTACCAAGACTTTGAAGCCCG...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGCGGGCTTCAAAGTCTTaGTACTGCTCCTCTGTGAGG +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQRASKS*YCSSVR
Trigger: CCTCACAGAGGAGCAGTACCAAGACTTTGAAGCCCG...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATGGGCCTCCCCGCGGTTaGTCACCAGTCGGAAAACAT +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHGPPRG*SPVGKH
Trigger: ATGTTTTCCGACTGGTGACCAACCGCGGGGAGGCCC...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCAGCAGCCGAACAATCTaGGCCTTCTGGGTTGGGGCA +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSSSRTI*AFWVGA
Trigger: TGCCCCAACCCAGAAGGCCCAGATTGTTCGGCTGCT...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGCCGCAGTCGGATTCCTaGATCATGCTGACGTCATTG +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQPQSDS*IMLTSL
Trigger: CAATGACGTCAGCATGATCCAGGAATCCGACTGCGG...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCACCGAGATGCTTGAACTaGGTGATGGAGAAGTCCGCT +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPPRCLN*VMEKSA
Trigger: AGCGGACTTCTCCATCACCCAGTTCAAGCATCTCGG...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCCGGTCCCTCGTGACGTaGGCCGGCTGTAGACCTGGG +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTRSLVT*AGCRPG
Trigger: CCCAGGTCTACAGCCGGCTCACGTCACGAGGGACCG...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTCCCACCTGGATGTTTaGACTCTTCACCTTCACGGT +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDSHLDV*TLHLHG
Trigger: ACCGTGAAGGTGAAGAGTTCAAACATCCAGGTGGGA...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCTCTTTTCCACAAGGATaGGGTCTCCCACCTGGATGT +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTSFPQG*GLPPGC
Trigger: ACATCCAGGTGGGAGACCTCATCCTTGTGGAAAAGA...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTCTTTTCCACAAGGATaGGGTCTCCCACCTGGATGT +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDSFPQG*GLPPGC
Trigger: ACATCCAGGTGGGAGACCTCATCCTTGTGGAAAAGA...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CACAGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTCCCCAGGAAGTTGTaGATGTCGATGTTGGGCTCT +
Preference number: 4 (lower is better)
Translates to: HSLAPKVLIGTALRPLPPVPRKL*MSMLGS
Trigger: AGAGCCCAACATCGACATTCACAACTTCCTGGGGAC...CGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CACAGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGCAAACAGGATCTTGGTaGGGCAGTTCACCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: HSLAPKVLIGTALRPLPPQTGSW*GSSPPG
Trigger: ACCTGGAGGTGAACTGCCTCACCAAGATCCTGTTTG...CGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACCCTTCATGTAGAACGTaGTTTCCCCCGTGGACTCAT +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDPSCRT*FPPWTH
Trigger: ATGAGTCCACGGGGGAAATCACGTTCTACATGAAGG...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTGGTACTGCTCCTCTGTaGGGGACTTCTTGGCTACCA +
Preference number: 4 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVGTAPL*GTSWLP
Trigger: TGGTAGCCAAGAAGTCCCTCACAGAGGAGCAGTACC...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGGGCAGGCCAGTTCCATaGACTCGTACTCATAGTATT +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRGRPVP*TRTHSI
Trigger: AATACTATGAGTACGAGTTCATGGAACTGGCCTGCC...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGCCCCTACTGCACAGGTaGGCTTCCCGGTGCGTTCCT +
Preference number: 4 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGPLLHR*ASRCVP
Trigger: AGGAACGCACCGGGAAGCTCACCTGTGCAGTAGGGG...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCATTCCTGGATCATGCTaGCGTCATTGCCTCCGTCCC +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSIPGSC*RHCLRP
Trigger: GGGACGGAGGCAATGACGTCAGCATGATCCAGGAAT...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGGCTCGGCCACTGTCATaGGCCAGTGCCACGTCTGGA +
Preference number: 4 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGARPLS*ASATSG
Trigger: TCCAGACGTGGCACTGGCTCATGACAGTGGCCGAGC...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATATCTCTGGGACGAACTaGGAGCAGGCGAGAAGCAGG +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHISGTN*EQARSR
Trigger: CCTGCTTCTCGCCTGCTCGCAGTTCGTCCCAGAGAT...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGTTCTAGCTGTACACGATCTTaGCCATGTCCAAGTTCACAC +
Preference number: 4 (lower is better)
Translates to: GPSGPTSSPSAQLSTQGSSCTRS*PCPSSH
Trigger: GTGTGAACTTGGACATGGGCAAGATCGTGTACAGCT...AGAACCTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACGAAATCCTGCCCAGCTaGTCAGGAATTGTGCTGGAA +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDEILPS*SGIVLE
Trigger: TTCCAGCACAATTCCTGAGCAGCTGGGCAGGATTTC...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGAAATCCTGCCCAGCTaGTCAGGAATTGTGCTGGAA +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPEILPS*SGIVLE
Trigger: TTCCAGCACAATTCCTGAGCAGCTGGGCAGGATTTC...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACAGCCATGACGACGTCTaGTCCCTTCATGTAGAACGT +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDSHDDV*SLHVER
Trigger: ACGTTCTACATGAAGGGAGCAGACGTCGTCATGGCT...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATGTGCGTTCTTGGCTGTaGACGTGGCTGTCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHVRSWL*TWLSPA
Trigger: AGCTGGAGACAGCCACGTGCACAGCCAAGAACGCAC...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCCACCCGCTTCTTGTaGCGCACGGGCTGCAGCGGG +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTSTRFL*RTGCSG
Trigger: CCCGCTGCAGCCCGTGCGCCACAAGAAGCGGGTGGA...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029060.11
ENSMUST00000109176.8
CDS-3UTR CCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGTCAGCAGGGACCCGCTaGTTCTTTTCCACAAGGATG +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQSAGTR*FFSTRM
Trigger: CATCCTTGTGGAAAAGAACCAGCGGGTCCCTGCTGA...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGTTCTAACACCATCTCATTCTaGGTCAGGGTTCCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: GPSGPTSSPSAQLSTQGSNTISF*VRVPVL
Trigger: CAAGACAGGAACCCTGACCCAGAATGAGATGGTGTT...AGAACCTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATTCTGCACTTCGTCCATaGAGTCCAGGCCGTAGGCCA +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHSALRP*SPGRRP
Trigger: TGGCCTACGGCCTGGACTCCATGGACGAAGTGCAGA...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGACACTTTCTGTCCACTaGACCAGAGCCACCTCATCC +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQTLSVH*TRATSS
Trigger: GGATGAGGTGGCTCTGGTCCAGTGGACAGAAAGTGT...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGAGCCAGTCGTTGTACTaGACAATGCCAGCCATGACG +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQSQSLY*TMPAMT
Trigger: CGTCATGGCTGGCATTGTCCAGTACAACGACTGGCT...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CACAGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGCGGGCTTCAAAGTCTTaGTACTGCTCCTCTGTGAGG +
Preference number: 4 (lower is better)
Translates to: HSLAPKVLIGTALRPLPPRASKS*YCSSVR
Trigger: CCTCACAGAGGAGCAGTACCAAGACTTTGAAGCCCG...CGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGGGCTCTCGATCACCGTaGCCACCTTCAGCGAGCGGT +
Preference number: 4 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGGSRSP*PPSASG
Trigger: ACCGCTCGCTGAAGGTGGCCACGGTGATCGAGAGCC...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGAAAACATGGATATCTTaGTTTCTGGTCACCAGATGT +
Preference number: 4 (lower is better)
Translates to: VRVELDLLLGERRRPEALKTWIS*FLVTRC
Trigger: ACATCTGGTGACCAGAAACCAAGATATCCATGTTTT...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCGAGATGCTTGAACTaGGTGATGGAGAAGTCCGCT +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQPRCLN*VMEKSA
Trigger: AGCGGACTTCTCCATCACCCAGTTCAAGCATCTCGG...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAGCTCAGGATACAACATaGCGACTTCCGACTTCACGT +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPAQDTT*RLPTSR
Trigger: ACGTGAAGTCGGAAGTCGCCATGTTGTATCCTGAGC...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCGCTCAGGATACAACATaGCGACTTCCGACTTCACGT +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTAQDTT*RLPTSR
Trigger: ACGTGAAGTCGGAAGTCGCCATGTTGTATCCTGAGC...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACACATCGATGAACTCATaGAGGAACACCAGGGAGGCA +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDTSMNS*RNTREA
Trigger: TGCCTCCCTGGTGTTCCTCCATGAGTTCATCGATGT...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACAGAGCCGTTTTTCTCTaGCGTCCTCAGGAAGATCAT +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDRAVFL*RPQEDH
Trigger: ATGATCTTCCTGAGGACGTCAGAGAAAAACGGCTCT...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCATTCCTGTCTTGTCTGTaGGCAAGTACGAAATCCTGC +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPFLSCL*ASTKSC
Trigger: GCAGGATTTCGTACTTGCTCACAGACAAGACAGGAA...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCTTCCTGTCTTGTCTGTaGGCAAGTACGAAATCCTGC +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTFLSCL*ASTKSC
Trigger: GCAGGATTTCGTACTTGCTCACAGACAAGACAGGAA...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAGCTGGGTGTAAATGCTaGAGATGTGACTCTGCACTT +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPAGCKC*RCDSAL
Trigger: AAGTGCAGAGTCACATCTTCAGCATTTACACCCAGC...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGGCTGGGTGTAAATGCTaGAGATGTGACTCTGCACTT +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQAGCKC*RCDSAL
Trigger: AAGTGCAGAGTCACATCTTCAGCATTTACACCCAGC...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCAGGCAGGCCAGTTCCATaGACTCGTACTCATAGTATT +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPGRPVP*TRTHSI
Trigger: AATACTATGAGTACGAGTTCATGGAACTGGCCTGCC...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGAGCTGTACACGATCTTaGCCATGTCCAAGTTCACAC +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQSCTRS*PCPSSH
Trigger: GTGTGAACTTGGACATGGGCAAGATCGTGTACAGCT...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCAAGCTGTACACGATCTTaGCCATGTCCAAGTTCACAC +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPSCTRS*PCPSSH
Trigger: GTGTGAACTTGGACATGGGCAAGATCGTGTACAGCT...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp CACAGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGCAAGTACGAAATCCTaGCCAGCTGCTCAGGAATTG +
Preference number: 4 (lower is better)
Translates to: HSLAPKVLIGTALRPLPPASTKS*PAAQEL
Trigger: CAATTCCTGAGCAGCTGGGCAGGATTTCGTACTTGC...CGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGAGCCATGACGACGTCTaGTCCCTTCATGTAGAACGT +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQSHDDV*SLHVER
Trigger: ACGTTCTACATGAAGGGAGCAGACGTCGTCATGGCT...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCTCAAAGTCTTGGTACTaGTCCTCTGTGAGGGACTTC +
Preference number: 4 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTSKSWY*SSVRDF
Trigger: GAAGTCCCTCACAGAGGAGCAGTACCAAGACTTTGA...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGTCAAAGTCTTGGTACTaGTCCTCTGTGAGGGACTTC +
Preference number: 4 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQSKSWY*SSVRDF
Trigger: GAAGTCCCTCACAGAGGAGCAGTACCAAGACTTTGA...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTACCAGGGCACAGTCATaGTTCCTACGGAAGGCATTC +
Preference number: 4 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVTRAQS*FLRKAF
Trigger: GAATGCCTTCCGTAGGAAGCATGACTGTGCCCTGGT...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGGGATGTGAAGGAGATTaGCACGATGTGTACAAACTC +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRGCEGD*HDVYKL
Trigger: GAGTTTGTACACATCGTGGCAATCTCCTTCACATCC...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCACGGGCTGCAGCGGGATaGTGTCCGTCATGTCGCCGC +
Preference number: 4 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSRAAAG*CPSCRR
Trigger: GCGGCGACATGACGGACAGCATCCCGCTGCAGCCCG...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109176.8
CDS-3UTR CCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCTCAGCAGGGACCCGCTaGTTCTTTTCCACAAGGATG +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSSAGTR*FFSTRM
Trigger: CATCCTTGTGGAAAAGAACCAGCGGGTCCCTGCTGA...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATTTCTCAGCCTCAGCCTaGTCCGTCACACCATTGGAC +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHFSASA*SVTPLD
Trigger: GTCCAATGGTGTGACGGACCAGGCTGAGGCTGAGAA...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTACACTTTCTGTCCACTaGACCAGAGCCACCTCATCC +
Preference number: 4 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVTLSVH*TRATSS
Trigger: GGATGAGGTGGCTCTGGTCCAGTGGACAGAAAGTGT...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGGGGCCTCCCCGCGGTTaGTCACCAGTCGGAAAACAT +
Preference number: 4 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGGPPRG*SPVGKH
Trigger: ATGTTTTCCGACTGGTGACCAACCGCGGGGAGGCCC...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCGCAGTCGGATTCCTaGATCATGCTGACGTCATTG +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSPQSDS*IMLTSL
Trigger: CAATGACGTCAGCATGATCCAGGAATCCGACTGCGG...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCGCAGTCGGATTCCTaGATCATGCTGACGTCATTG +
Preference number: 4 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVPQSDS*IMLTSL
Trigger: CAATGACGTCAGCATGATCCAGGAATCCGACTGCGG...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCAAACAGGATCTTGGTaGGGCAGTTCACCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHQTGSW*GSSPPG
Trigger: ACCTGGAGGTGAACTGCCTCACCAAGATCCTGTTTG...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCACCGTGGGGCCCTTCTaGGCAGGTGGATCCTGGGAT +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTTVGPF*AGGSWD
Trigger: ATCCCAGGATCCACCTGCTCAGAAGGGCCCCACGGT...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCTTCATGTAGAACGTaGTTTCCCCCGTGGACTCAT +
Preference number: 4 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVPSCRT*FPPWTH
Trigger: ATGAGTCCACGGGGGAAATCACGTTCTACATGAAGG...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCGTACTCATAGTATTTaGGGCAAACCTCCAGGGAGT +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQRTHSI*GKPPGS
Trigger: ACTCCCTGGAGGTTTGCCTCAAATACTATGAGTACG...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGGGCAGGCCAGTTCCATaGACTCGTACTCATAGTATT +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQGRPVP*TRTHSI
Trigger: AATACTATGAGTACGAGTTCATGGAACTGGCCTGCC...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGGCAGCGCCCCGTACATaGTGGTGCTCCCTTGATAGA +
Preference number: 4 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGAAPRT*WCSLDR
Trigger: TCTATCAAGGGAGCACCATCATGTACGGGGCGCTGC...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCGCTCGGCCACTGTCATaGGCCAGTGCCACGTCTGGA +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTARPLS*ASATSG
Trigger: TCCAGACGTGGCACTGGCTCATGACAGTGGCCGAGC...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCGAAATCCTGCCCAGCTaGTCAGGAATTGTGCTGGAA +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSEILPS*SGIVLE
Trigger: TTCCAGCACAATTCCTGAGCAGCTGGGCAGGATTTC...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCGCAAGTACGAAATCCTaGCCAGCTGCTCAGGAATTG +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSASTKS*PAAQEL
Trigger: CAATTCCTGAGCAGCTGGGCAGGATTTCGTACTTGC...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTAGCCATGACGACGTCTaGTCCCTTCATGTAGAACGT +
Preference number: 4 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVSHDDV*SLHVER
Trigger: ACGTTCTACATGAAGGGAGCAGACGTCGTCATGGCT...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGGTGCGTTCTTGGCTGTaGACGTGGCTGTCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGVRSWL*TWLSPA
Trigger: AGCTGGAGACAGCCACGTGCACAGCCAAGAACGCAC...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATACCAGGGCACAGTCATaGTTCCTACGGAAGGCATTC +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHTRAQS*FLRKAF
Trigger: GAATGCCTTCCGTAGGAAGCATGACTGTGCCCTGGT...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAACCTGCTTCCCTTCCTTaGCCTCCACGCCCACGCCGC +
Preference number: 4 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQPASLP*PPRPRR
Trigger: GCGGCGTGGGCGTGGAGGGCAAGGAAGGGAAGCAGG...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGCTGCCAGCGAGGCCTaGTTCCCTTCCTTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSAASEA*FPSLPS
Trigger: GGAGGGCAAGGAAGGGAAGCAGGCCTCGCTGGCAGC...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCGATGGAGAAGTCCGCTaGCAGCGAGGCCTGCTTCCC +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTDGEVR*QRGLLP
Trigger: GGGAAGCAGGCCTCGCTGGCAGCGGACTTCTCCATC...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGGATGTGAAGGAGATTaGCACGATGTGTACAAACTC +
Preference number: 4 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPGCEGD*HDVYKL
Trigger: GAGTTTGTACACATCGTGGCAATCTCCTTCACATCC...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAAAGAAGTATCTGAACTaGCTGAACAACACCCCAGGA +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPKKYLN*LNNTPG
Trigger: TCCTGGGGTGTTGTTCAGCCAGTTCAGATACTTCTT...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATTCAGCAGGGACCCGCTaGTTCTTTTCCACAAGGATG +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHSAGTR*FFSTRM
Trigger: CATCCTTGTGGAAAAGAACCAGCGGGTCCCTGCTGA...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATAGCCAGTCGTTGTACTaGACAATGCCAGCCATGACG +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHSQSLY*TMPAMT
Trigger: CGTCATGGCTGGCATTGTCCAGTACAACGACTGGCT...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCGGGCTTCAAAGTCTTaGTACTGCTCCTCTGTGAGG +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHRASKS*YCSSVR
Trigger: CCTCACAGAGGAGCAGTACCAAGACTTTGAAGCCCG...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCGGCTCTCGATCACCGTaGCCACCTTCAGCGAGCGGT +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTGSRSP*PPSASG
Trigger: ACCGCTCGCTGAAGGTGGCCACGGTGATCGAGAGCC...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACGGATATCTTGGTTTCTaGTCACCAGATGTGCGTTCT +
Preference number: 4 (lower is better)
Translates to: SPLGAQCRLSEASCASHDGYLGF*SPDVRS
Trigger: AGAACGCACATCTGGTGACCAGAAACCAAGATATCC...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCAGGATATCTTGGTTTCTaGTCACCAGATGTGCGTTCT +
Preference number: 4 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPGYLGF*SPDVRS
Trigger: AGAACGCACATCTGGTGACCAGAAACCAAGATATCC...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCGCAGTCGGATTCCTaGATCATGCTGACGTCATTG +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHPQSDS*IMLTSL
Trigger: CAATGACGTCAGCATGATCCAGGAATCCGACTGCGG...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCGAGATGCTTGAACTaGGTGATGGAGAAGTCCGCT +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHPRCLN*VMEKSA
Trigger: AGCGGACTTCTCCATCACCCAGTTCAAGCATCTCGG...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCACATCGATGAACTCATaGAGGAACACCAGGGAGGCA +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSTSMNS*RNTREA
Trigger: TGCCTCCCTGGTGTTCCTCCATGAGTTCATCGATGT...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATTCTTTTCCACAAGGATaGGGTCTCCCACCTGGATGT +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHSFPQG*GLPPGC
Trigger: ACATCCAGGTGGGAGACCTCATCCTTGTGGAAAAGA...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCAGAGCCGTTTTTCTCTaGCGTCCTCAGGAAGATCAT +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSRAVFL*RPQEDH
Trigger: ATGATCTTCCTGAGGACGTCAGAGAAAAACGGCTCT...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAACCGTGGGGCCCTTCTaGGCAGGTGGATCCTGGGAT +
Preference number: 4 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSTVGPF*AGGSWD
Trigger: ATCCCAGGATCCACCTGCTCAGAAGGGCCCCACGGT...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTGGCAGGCCAGTTCCATaGACTCGTACTCATAGTATT +
Preference number: 4 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVGRPVP*TRTHSI
Trigger: AATACTATGAGTACGAGTTCATGGAACTGGCCTGCC...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGTCCCTTGATAGATGCTaGTTAACACCCAAATTAAGA +
Preference number: 4 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKSLDRC*LTPKLR
Trigger: TCTTAATTTGGGTGTTAATCAGCATCTATCAAGGGA...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAACGGCCGGCAAAGTGCTaGAGGGCCACCATGACCAGC +
Preference number: 4 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQRPAKC*RATMTS
Trigger: GCTGGTCATGGTGGCCCTGCAGCACTTTGCCGGCCG...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCAGGAAGCGGATGATCTaGAGGTACCAGCGGCCGGCA +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTRKRMI*RYQRPA
Trigger: TGCCGGCCGCTGGTACCTGCAGATCATCCGCTTCCT...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCAGCTGTACACGATCTTaGCCATGTCCAAGTTCACAC +
Preference number: 4 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSSCTRS*PCPSSH
Trigger: GTGTGAACTTGGACATGGGCAAGATCGTGTACAGCT...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATGGATTTTGGAATCCCTaGGGATCACCCAGCTGTACA +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHGFWNP*GSPSCT
Trigger: TGTACAGCTGGGTGATCCGCAGGGATTCCAAAATCC...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATGAAATCCTGCCCAGCTaGTCAGGAATTGTGCTGGAA +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHEILPS*SGIVLE
Trigger: TTCCAGCACAATTCCTGAGCAGCTGGGCAGGATTTC...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGGGATGTGAAGGAGATTaGCACGATGTGTACAAACTC +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQGCEGD*HDVYKL
Trigger: GAGTTTGTACACATCGTGGCAATCTCCTTCACATCC...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCGCCTTCACAGCCTCGTaGACACGGCTGCTCATGGTC +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTAFTAS*TRLLMV
Trigger: GACCATGAGCAGCCGTGTCCACGAGGCTGTGAAGGC...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGTTCTCAGCCTCAGCCTaGTCCGTCACACCATTGGAC +
Preference number: 4 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGFSASA*SVTPLD
Trigger: GTCCAATGGTGTGACGGACCAGGCTGAGGCTGAGAA...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGCCAGATGTGCGTTCTTaGCTGTGCACGTGGCTGTCT +
Preference number: 4 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGPDVRS*LCTWLS
Trigger: AGACAGCCACGTGCACAGCCAAGAACGCACATCTGG...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp CACAGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGGATATCTTGGTTTCTaGTCACCAGATGTGCGTTCT +
Preference number: 4 (lower is better)
Translates to: HSLAPKVLIGTALRPLPPGYLGF*SPDVRS
Trigger: AGAACGCACATCTGGTGACCAGAAACCAAGATATCC...CGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATACATCGATGAACTCATaGAGGAACACCAGGGAGGCA +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHTSMNS*RNTREA
Trigger: TGCCTCCCTGGTGTTCCTCCATGAGTTCATCGATGT...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGCACTGTCTTCCCTGGTaGAAGTCCCCAGGAAGTTGT +
Preference number: 4 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGHCLPW*KSPGSC
Trigger: ACAACTTCCTGGGGACTTTCACCAGGGAAGACAGTG...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAATCCGAACCTTGGTGGTaGCCGTGGGGCCCTTCTGAG +
Preference number: 4 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQSEPWW*PWGPSE
Trigger: CTCAGAAGGGCCCCACGGTCACCACCAAGGTTCGGA...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCATCTCTGGGACGAACTaGGAGCAGGCGAGAAGCAGG +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTISGTN*EQARSR
Trigger: CCTGCTTCTCGCCTGCTCGCAGTTCGTCCCAGAGAT...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATTCAAAGTCTTGGTACTaGTCCTCTGTGAGGGACTTC +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHSKSWY*SSVRDF
Trigger: GAAGTCCCTCACAGAGGAGCAGTACCAAGACTTTGA...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGACCAGGGCACAGTCATaGTTCCTACGGAAGGCATTC +
Preference number: 4 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGTRAQS*FLRKAF
Trigger: GAATGCCTTCCGTAGGAAGCATGACTGTGCCCTGGT...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR GCA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTGGATGTGAAGGAGATTaGCACGATGTGTACAAACTC +
Preference number: 4 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVGCEGD*HDVYKL
Trigger: GAGTTTGTACACATCGTGGCAATCTCCTTCACATCC...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTAAGAAGTATCTGAACTaGCTGAACAACACCCCAGGA +
Preference number: 4 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVKKYLN*LNNTPG
Trigger: TCCTGGGGTGTTGTTCAGCCAGTTCAGATACTTCTT...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATAACACCATCTCATTCTaGGTCAGGGTTCCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHNTISF*VRVPVL
Trigger: CAAGACAGGAACCCTGACCCAGAATGAGATGGTGTT...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAATCCGGGCTGGATGCCTaGTACACTCGGCAGGAGTCC +
Preference number: 4 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQSGLDA*YTRQES
Trigger: GGACTCCTGCCGAGTGTACCAGGCATCCAGCCCGGA...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp GGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGTTCTAAAACATGGATATCTTaGTTTCTGGTCACCAGATGT +
Preference number: 4 (lower is better)
Translates to: GPSGPTSSPSAQLSTQGSKTWIS*FLVTRC
Trigger: ACATCTGGTGACCAGAAACCAAGATATCCATGTTTT...AGAACCTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGAAAACATGGATATCTTaGTTTCTGGTCACCAGATGT +
Preference number: 4 (lower is better)
Translates to: CRLSEASCASHDCTVQLRKTWIS*FLVTRC
Trigger: ACATCTGGTGACCAGAAACCAAGATATCCATGTTTT...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAACAATCTGGGCCTTCTaGGTTGGGGCACAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSTIWAF*VGAQRQ
Trigger: CTGCCGCTGTGCCCCAACCCAGAAGGCCCAGATTGT...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCAGCAGCCGAACAATCTaGGCCTTCTGGGTTGGGGCA +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTSSRTI*AFWVGA
Trigger: TGCCCCAACCCAGAAGGCCCAGATTGTTCGGCTGCT...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGTCCCACCTGGATGTTTaGACTCTTCACCTTCACGGT +
Preference number: 4 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGSHLDV*TLHLHG
Trigger: ACCGTGAAGGTGAAGAGTTCAAACATCCAGGTGGGA...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCACCAGGTGCAGCCGCTTaGACACCATCTCATTCTGGG +
Preference number: 4 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSPGAAA*TPSHSG
Trigger: CCCAGAATGAGATGGTGTTCAAGCGGCTGCACCTGG...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGGACAATGCCAGCCATaGCGACGTCTGCTCCCTTCA +
Preference number: 4 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSGQCQP*RRLLPS
Trigger: TGAAGGGAGCAGACGTCGTCATGGCTGGCATTGTCC...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCGGTACTGCTCCTCTGTaGGGGACTTCTTGGCTACCA +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTGTAPL*GTSWLP
Trigger: TGGTAGCCAAGAAGTCCCTCACAGAGGAGCAGTACC...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCATCCCTTGATAGATGCTaGTTAACACCCAAATTAAGA +
Preference number: 4 (lower is better)
Translates to: APKVLIGTALRPLPPVPPSLDRC*LTPKLR
Trigger: TCTTAATTTGGGTGTTAATCAGCATCTATCAAGGGA...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGTCTCCGCAGGTACTTaGGGACATAGAGGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSVSAGT*GHRGGD
Trigger: GTCTCCCCCTCTATGTCCTCAAGTACCTGCGGAGAC...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCGCTGCTCAGGAATTGTaGTGGAACGAACCACGGTCC +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTAAQEL*WNEPRS
Trigger: GGACCGTGGTTCGTTCCAGCACAATTCCTGAGCAGC...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCCAGGAGTCCTCAAACTaGTTCTCAGCCTCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTQESSN*FSASAW
Trigger: CCAGGCTGAGGCTGAGAAGCAGTTTGAGGACTCCTG...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAACCAGGGGTCCTCAGCTaGATGGAGGACTGGTCTCGA +
Preference number: 4 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQPGVLS*MEDWSR
Trigger: TCGAGACCAGTCCTCCATGCAGCTGAGGACCCCTGG...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCACTGTCATGAGCCAGTaGCACGTCTGGATGGTGAGC +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTTVMSQ*HVWMVS
Trigger: GCTCACCATCCAGACGTGGCACTGGCTCATGACAGT...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACCTCATCCGGGCTaGATGCCTGGTACACTCGGC +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTPPHPG*MPGTLG
Trigger: GCCGAGTGTACCAGGCATCCAGCCCGGATGAGGTGG...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCGTCCCCAGGAAGTTGTaGATGTCGATGTTGGGCTCT +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTVPRKL*MSMLGS
Trigger: AGAGCCCAACATCGACATTCACAACTTCCTGGGGAC...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGTTCCTGTCTTGTCTGTaGGCAAGTACGAAATCCTGC +
Preference number: 4 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGFLSCL*ASTKSC
Trigger: GCAGGATTTCGTACTTGCTCACAGACAAGACAGGAA...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGGTACTGCTCCTCTGTaGGGGACTTCTTGGCTACCA +
Preference number: 4 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSGTAPL*GTSWLP
Trigger: TGGTAGCCAAGAAGTCCCTCACAGAGGAGCAGTACC...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGTCCCTTGATAGATGCTaGTTAACACCCAAATTAAGA +
Preference number: 4 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQSLDRC*LTPKLR
Trigger: TCTTAATTTGGGTGTTAATCAGCATCTATCAAGGGA...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCTGTAGCAGGCCAGGCTaGGTAGCTCGGCCACTGTCA +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTCSRPG*VARPLS
Trigger: TGACAGTGGCCGAGCTACTCAGCCTGGCCTGCTACA...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAATCTCTGGGACGAACTaGGAGCAGGCGAGAAGCAGG +
Preference number: 4 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQISGTN*EQARSR
Trigger: CCTGCTTCTCGCCTGCTCGCAGTTCGTCCCAGAGAT...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCGGTCCCGGGGATTTTaGAATCCCTGCGGATCACCC +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTRSRGF*NPCGSP
Trigger: GGGTGATCCGCAGGGATTCCAAAATCCCCGGGACCG...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAGCTCAGGAATTGTGCTaGAACGAACCACGGTCCCGG +
Preference number: 4 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQAQELC*NEPRSR
Trigger: CCGGGACCGTGGTTCGTTCCAGCACAATTCCTGAGC...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCATTCTCAGCCTCAGCCTaGTCCGTCACACCATTGGAC +
Preference number: 4 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSFSASA*SVTPLD
Trigger: GTCCAATGGTGTGACGGACCAGGCTGAGGCTGAGAA...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCAGCCAGTCGTTGTACTaGACAATGCCAGCCATGACG +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTSQSLY*TMPAMT
Trigger: CGTCATGGCTGGCATTGTCCAGTACAACGACTGGCT...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCACAATCTGGGCCTTCTaGGTTGGGGCACAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTTIWAF*VGAQRQ
Trigger: CTGCCGCTGTGCCCCAACCCAGAAGGCCCAGATTGT...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCACAAACAGGATCTTGGTaGGGCAGTTCACCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSQTGSW*GSSPPG
Trigger: ACCTGGAGGTGAACTGCCTCACCAAGATCCTGTTTG...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCGGACAATGCCAGCCATaGCGACGTCTGCTCCCTTCA +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTGQCQP*RRLLPS
Trigger: TGAAGGGAGCAGACGTCGTCATGGCTGGCATTGTCC...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCGTCTCCGCAGGTACTTaGGGACATAGAGGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTVSAGT*GHRGGD
Trigger: GTCTCCCCCTCTATGTCCTCAAGTACCTGCGGAGAC...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCATCGGATCTCCTCTACTaGCTCACGGATGATGGTGAC +
Preference number: 4 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSSDLLY*LTDDGD
Trigger: GTCACCATCATCCGTGAGGCAGTAGAGGAGATCCGA...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCAGCCATGACGACGTCTaGTCCCTTCATGTAGAACGT +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTSHDDV*SLHVER
Trigger: ACGTTCTACATGAAGGGAGCAGACGTCGTCATGGCT...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACTGTCATGAGCCAGTaGCACGTCTGGATGGTGAGC +
Preference number: 4 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQTVMSQ*HVWMVS
Trigger: GCTCACCATCCAGACGTGGCACTGGCTCATGACAGT...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCAGAGCCGTTTTTCTCTaGCGTCCTCAGGAAGATCAT +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTRAVFL*RPQEDH
Trigger: ATGATCTTCCTGAGGACGTCAGAGAAAAACGGCTCT...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCGCTGGGTGTAAATGCTaGAGATGTGACTCTGCACTT +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTAGCKC*RCDSAL
Trigger: AAGTGCAGAGTCACATCTTCAGCATTTACACCCAGC...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCGCTGCTCAGGAATTGTaGTGGAACGAACCACGGTCC +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTAAQEL*WNEPRS
Trigger: GGACCGTGGTTCGTTCCAGCACAATTCCTGAGCAGC...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCAGGGCACAGTCATaGTTCCTACGGAAGGCATTC +
Preference number: 4 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQTRAQS*FLRKAF
Trigger: GAATGCCTTCCGTAGGAAGCATGACTGTGCCCTGGT...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCACTGTCATGAGCCAGTaGCACGTCTGGATGGTGAGC +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTTVMSQ*HVWMVS
Trigger: GCTCACCATCCAGACGTGGCACTGGCTCATGACAGT...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATAAAACATGGATATCTTaGTTTCTGGTCACCAGATGT +
Preference number: 4 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHKTWIS*FLVTRC
Trigger: ACATCTGGTGACCAGAAACCAAGATATCCATGTTTT...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR TCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAAGAGCCGTTTTTCTCTaGCGTCCTCAGGAAGATCAT +
Preference number: 4 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSRAVFL*RPQEDH
Trigger: ATGATCTTCCTGAGGACGTCAGAGAAAAACGGCTCT...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCAAACAGGATCTTGGTaGGGCAGTTCACCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTQTGSW*GSSPPG
Trigger: ACCTGGAGGTGAACTGCCTCACCAAGATCCTGTTTG...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAACCTTCATGTAGAACGTaGTTTCCCCCGTGGACTCAT +
Preference number: 4 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQPSCRT*FPPWTH
Trigger: ATGAGTCCACGGGGGAAATCACGTTCTACATGAAGG...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAGGATTTTGGAATCCCTaGGGATCACCCAGCTGTACA +
Preference number: 4 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQGFWNP*GSPSCT
Trigger: TGTACAGCTGGGTGATCCGCAGGGATTCCAAAATCC...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCTCTGGTCACCAGATGTaGGTTCTTGGCTGTGCACGT +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTSGHQM*VLGCAR
Trigger: ACGTGCACAGCCAAGAACGCACATCTGGTGACCAGA...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCGGATATCTTGGTTTCTaGTCACCAGATGTGCGTTCT +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTGYLGF*SPDVRS
Trigger: AGAACGCACATCTGGTGACCAGAAACCAAGATATCC...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCGAGATGCTTGAACTaGGTGATGGAGAAGTCCGCT +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTPRCLN*VMEKSA
Trigger: AGCGGACTTCTCCATCACCCAGTTCAAGCATCTCGG...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAAAGAAGTATCTGAACTaGCTGAACAACACCCCAGGA +
Preference number: 4 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSKKYLN*LNNTPG
Trigger: TCCTGGGGTGTTGTTCAGCCAGTTCAGATACTTCTT...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAAACACCATCTCATTCTaGGTCAGGGTTCCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQNTISF*VRVPVL
Trigger: CAAGACAGGAACCCTGACCCAGAATGAGATGGTGTT...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCGCTCAGGATACAACATaGCGACTTCCGACTTCACGT +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTAQDTT*RLPTSR
Trigger: ACGTGAAGTCGGAAGTCGCCATGTTGTATCCTGAGC...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCACATCGATGAACTCATaGAGGAACACCAGGGAGGCA +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTTSMNS*RNTREA
Trigger: TGCCTCCCTGGTGTTCCTCCATGAGTTCATCGATGT...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCGCTGGGTGTAAATGCTaGAGATGTGACTCTGCACTT +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTAGCKC*RCDSAL
Trigger: AAGTGCAGAGTCACATCTTCAGCATTTACACCCAGC...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR GCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCTCAAAGTCTTGGTACTaGTCCTCTGTGAGGGACTTC +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTSKSWY*SSVRDF
Trigger: GAAGTCCCTCACAGAGGAGCAGTACCAAGACTTTGA...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAAAGAAGTATCTGAACTaGCTGAACAACACCCCAGGA +
Preference number: 4 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQKKYLN*LNNTPG
Trigger: TCCTGGGGTGTTGTTCAGCCAGTTCAGATACTTCTT...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCAACACCATCTCATTCTaGGTCAGGGTTCCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTNTISF*VRVPVL
Trigger: CAAGACAGGAACCCTGACCCAGAATGAGATGGTGTT...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CCA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCAAAACATGGATATCTTaGTTTCTGGTCACCAGATGT +
Preference number: 4 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTKTWIS*FLVTRC
Trigger: ACATCTGGTGACCAGAAACCAAGATATCCATGTTTT...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR TCA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCATCCCTTGATAGATGCTaGTTAACACCCAAATTAAGA +
Preference number: 4 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSSLDRC*LTPKLR
Trigger: TCTTAATTTGGGTGTTAATCAGCATCTATCAAGGGA...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS GCA 90 bp CCCGCGCGCGGCCTACTGTCCACCCGCTTCTTGTGGCGCACGGGCTaGAGCGGGATGCTGTCCGTCATGTCGCCGCCCGCCGCGCCCCCT +
Preference number: 5 (lower is better)
Translates to: PARGLLSTRFLWRTG*SGMLSVMSPPAAPP
Trigger: AGGGGGCGCGGCGGGCGGCGACATGACGGACAGCATCCCGCTGCAGCCCGTGCGCCACAAGAAGCGGGTGGACAGTAGGCCGCGCGCGGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109176.8
CDS CCA 90 bp CACTCACAGCACCCCGCGCGCGGCCTACTGTCCACCCGCTTCTTGTaGCGCACGGGCTGCAGCGGGATGCTGTCCGTCATGTCGCCGCCC +
Preference number: 5 (lower is better)
Translates to: HSQHPARGLLSTRFL*RTGCSGMLSVMSPP
Trigger: GGGCGGCGACATGACGGACAGCATCCCGCTGCAGCCCGTGCGCCACAAGAAGCGGGTGGACAGTAGGCCGCGCGCGGGGTGCTGTGAGTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109176.8
CDS-3UTR CAA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGGCCTGCTTCCCTTCCTaGCCCTCCACGCCCACGCCG +
Preference number: 5 (lower is better)
Translates to: LRRLVRVELDLLLGERRRACFPS*PSTPTP
Trigger: CGGCGTGGGCGTGGAGGGCAAGGAAGGGAAGCAGGC...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGTGGGCCTCCCCGCGGTaGGTCACCAGTCGGAAAACA +
Preference number: 5 (lower is better)
Translates to: VRVELDLLLGERRRPEALWASPR*VTSRKT
Trigger: TGTTTTCCGACTGGTGACCAACCGCGGGGAGGCCCA...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp AGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCTCGTGGCCTGCTTCCCTTCCTaGCCCTCCACGCCCACGCCG +
Preference number: 5 (lower is better)
Translates to: SEASCASHDCTVQLRRLVACFPS*PSTPTP
Trigger: CGGCGTGGGCGTGGAGGGCAAGGAAGGGAAGCAGGC...CACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCGCCTGCTTCCCTTCCTaGCCCTCCACGCCCACGCCG +
Preference number: 5 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSACFPS*PSTPTP
Trigger: CGGCGTGGGCGTGGAGGGCAAGGAAGGGAAGCAGGC...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGCCAGCTGCTCAGGAATaGTGCTGGAACGAACCACGG +
Preference number: 5 (lower is better)
Translates to: VRVELDLLLGERRRPEALPAAQE*CWNEPR
Trigger: CCGTGGTTCGTTCCAGCACAATTCCTGAGCAGCTGG...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS TCA 90 bp CAGCCTCGTGGACACGGCTGCTCATGGTCCTCCGAACCTTGGTGGTaGCCGTGGGGCCCTTCTGAGCAGGTGGATCCTGGGATTGCTGGG +
Preference number: 5 (lower is better)
Translates to: QPRGHGCSWSSEPWW*PWGPSEQVDPGIAG
Trigger: CCCAGCAATCCCAGGATCCACCTGCTCAGAAGGGCCCCACGGTCACCACCAAGGTTCGGAGGACCATGAGCAGCCGTGTCCACGAGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGGCGGGCTTCAAAGTCTaGGTACTGCTCCTCTGTGAG +
Preference number: 5 (lower is better)
Translates to: VRVELDLLLGERRRPEALAGFKV*VLLLCE
Trigger: CTCACAGAGGAGCAGTACCAAGACTTTGAAGCCCGC...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGAAGCGGCCGAGATGCTaGAACTGGGTGATGGAGAAG +
Preference number: 5 (lower is better)
Translates to: VRVELDLLLGERRRPEALKRPRC*NWVMEK
Trigger: CTTCTCCATCACCCAGTTCAAGCATCTCGGCCGCTT...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS GCA 90 bp AGCAGGAAGCGGATGATCTGCAGGTACCAGCGGCCGGCAAAGTGCTaGAGGGCCACCATGACCAGCGACACCACCACCAGCGCACCAAAC +
Preference number: 5 (lower is better)
Translates to: SRKRMICRYQRPAKC*RATMTSDTTTSAPN
Trigger: GTTTGGTGCGCTGGTGGTGGTGTCGCTGGTCATGGTGGCCCTGCAGCACTTTGCCGGCCGCTGGTACCTGCAGATCATCCGCTTCCTGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGGCACCAAACAGGATCTaGGTGAGGCAGTTCACCTCC +
Preference number: 5 (lower is better)
Translates to: LRRLVRVELDLLLGERRRAPNRI*VRQFTS
Trigger: GGAGGTGAACTGCCTCACCAAGATCCTGTTTGGTGC...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGTGGGCCTCCCCGCGGTaGGTCACCAGTCGGAAAACA +
Preference number: 5 (lower is better)
Translates to: CRLSEASCASHDCTVQLRWASPR*VTSRKT
Trigger: TGTTTTCCGACTGGTGACCAACCGCGGGGAGGCCCA...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS GCA 90 bp AGGACCGAATCTGCAGGAGGTCAGCAGCCGTGGGAAGCCTCTGTGTaGAGGCCACCGGGAGCCGAAGCTTCCAGTCTGTCTCTCCATCCA +
Preference number: 5 (lower is better)
Translates to: RTESAGGQQPWEASV*RPPGAEASSLSLHP
Trigger: TGGATGGAGAGACAGACTGGAAGCTTCGGCTCCCGGTGGCCTGCACACAGAGGCTTCCCACGGCTGCTGACCTCCTGCAGATTCGGTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCTCCCACCTGGATGTTaGAACTCTTCACCTTCACGG +
Preference number: 5 (lower is better)
Translates to: LRRLVRVELDLLLGERRRLPPGC*NSSPSR
Trigger: CCGTGAAGGTGAAGAGTTCAAACATCCAGGTGGGAG...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGTTCTACGGTCCCGGGGATTTaGGAATCCCTGCGGATCACC +
Preference number: 5 (lower is better)
Translates to: GPSGPTSSPSAQLSTQGSTVPGI*ESLRIT
Trigger: GGTGATCCGCAGGGATTCCAAAATCCCCGGGACCGT...AGAACCTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCCCAGCTGCTCAGGAATaGTGCTGGAACGAACCACGG +
Preference number: 5 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSPAAQE*CWNEPR
Trigger: CCGTGGTTCGTTCCAGCACAATTCCTGAGCAGCTGG...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGTCCTCCAGCCAGTCGTaGTACTGGACAATGCCAGCC +
Preference number: 5 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKSSSQS*YWTMPA
Trigger: GGCTGGCATTGTCCAGTACAACGACTGGCTGGAGGA...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCACCAGATGTGCGTTCTaGGCTGTGCACGTGGCTGTC +
Preference number: 5 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSTRCAF*AVHVAV
Trigger: GACAGCCACGTGCACAGCCAAGAACGCACATCTGGT...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCATGGGCCTCCCCGCGGTaGGTCACCAGTCGGAAAACA +
Preference number: 5 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPWASPR*VTSRKT
Trigger: TGTTTTCCGACTGGTGACCAACCGCGGGGAGGCCCA...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGTGGGCCTCCCCGCGGTaGGTCACCAGTCGGAAAACA +
Preference number: 5 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQWASPR*VTSRKT
Trigger: TGTTTTCCGACTGGTGACCAACCGCGGGGAGGCCCA...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGGGCCTCCCCGCGGTaGGTCACCAGTCGGAAAACA +
Preference number: 5 (lower is better)
Translates to: SPLGAQCRLSEASCASHDWASPR*VTSRKT
Trigger: TGTTTTCCGACTGGTGACCAACCGCGGGGAGGCCCA...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 90 bp GCCTGGTCCGTCACACCATTGGACTCGTACACGGGTGTCACGTTGTaGCAGAGTGCAATGGCCTTCACAGCCTCGTGGACACGGCTGCTC +
Preference number: 5 (lower is better)
Translates to: AWSVTPLDSYTGVTL*QSAMAFTASWTRLL
Trigger: GAGCAGCCGTGTCCACGAGGCTGTGAAGGCCATTGCACTCTGCCACAACGTGACACCCGTGTACGAGTCCAATGGTGTGACGGACCAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCAGCTGTACACGATCTaGCCCATGTCCAAGTTCACA +
Preference number: 5 (lower is better)
Translates to: LRRLVRVELDLLLGERRRQLYTI*PMSKFT
Trigger: TGTGAACTTGGACATGGGCAAGATCGTGTACAGCTG...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAACGGTCCCGGGGATTTaGGAATCCCTGCGGATCACC +
Preference number: 5 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPTVPGI*ESLRIT
Trigger: GGTGATCCGCAGGGATTCCAAAATCCCCGGGACCGT...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCACGGTCCCGGGGATTTaGGAATCCCTGCGGATCACC +
Preference number: 5 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTTVPGI*ESLRIT
Trigger: GGTGATCCGCAGGGATTCCAAAATCCCCGGGACCGT...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCCCAGGTGCAGCCGCTaGAACACCATCTCATTCTGG +
Preference number: 5 (lower is better)
Translates to: CRLSEASCASHDCTVQLRPRCSR*NTISFW
Trigger: CCAGAATGAGATGGTGTTCAAGCGGCTGCACCTGGG...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGTTCTTCCTCCAGCCAGTCGTaGTACTGGACAATGCCAGCC +
Preference number: 5 (lower is better)
Translates to: GPSGPTSSPSAQLSTQGSSSSQS*YWTMPA
Trigger: GGCTGGCATTGTCCAGTACAACGACTGGCTGGAGGA...AGAACCTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGACCAGATGTGCGTTCTaGGCTGTGCACGTGGCTGTC +
Preference number: 5 (lower is better)
Translates to: CRLSEASCASHDCTVQLRTRCAF*AVHVAV
Trigger: GACAGCCACGTGCACAGCCAAGAACGCACATCTGGT...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGAAGCGGCCGAGATGCTaGAACTGGGTGATGGAGAAG +
Preference number: 5 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKKRPRC*NWVMEK
Trigger: CTTCTCCATCACCCAGTTCAAGCATCTCGGCCGCTT...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 90 bp CTTTCTGTCCACTGGACCAGAGCCACCTCATCCGGGCTGGATGCCTaGTACACTCGGCAGGAGTCCTCAAACTGCTTCTCAGCCTCAGCC +
Preference number: 5 (lower is better)
Translates to: LSVHWTRATSSGLDA*YTRQESSNCFSASA
Trigger: GGCTGAGGCTGAGAAGCAGTTTGAGGACTCCTGCCGAGTGTACCAGGCATCCAGCCCGGATGAGGTGGCTCTGGTCCAGTGGACAGAAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCCTCCCACCTGGATGTTaGAACTCTTCACCTTCACGG +
Preference number: 5 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSLPPGC*NSSPSR
Trigger: CCGTGAAGGTGAAGAGTTCAAACATCCAGGTGGGAG...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGGCACCAAACAGGATCTaGGTGAGGCAGTTCACCTCC +
Preference number: 5 (lower is better)
Translates to: CRLSEASCASHDCTVQLRAPNRI*VRQFTS
Trigger: GGAGGTGAACTGCCTCACCAAGATCCTGTTTGGTGC...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGTCCTCCAGCCAGTCGTaGTACTGGACAATGCCAGCC +
Preference number: 5 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQSSSQS*YWTMPA
Trigger: GGCTGGCATTGTCCAGTACAACGACTGGCTGGAGGA...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCATCCTCCAGCCAGTCGTaGTACTGGACAATGCCAGCC +
Preference number: 5 (lower is better)
Translates to: APKVLIGTALRPLPPVPPSSSQS*YWTMPA
Trigger: GGCTGGCATTGTCCAGTACAACGACTGGCTGGAGGA...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGGCGGGCTTCAAAGTCTaGGTACTGCTCCTCTGTGAG +
Preference number: 5 (lower is better)
Translates to: CRLSEASCASHDCTVQLRAGFKV*VLLLCE
Trigger: CTCACAGAGGAGCAGTACCAAGACTTTGAAGCCCGC...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp AGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCACCAGATGTGCGTTCTaGGCTGTGCACGTGGCTGTC +
Preference number: 5 (lower is better)
Translates to: STQGSDRYSSQAPPSGSTTRCAF*AVHVAV
Trigger: GACAGCCACGTGCACAGCCAAGAACGCACATCTGGT...GGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGAAGCGGCCGAGATGCTaGAACTGGGTGATGGAGAAG +
Preference number: 5 (lower is better)
Translates to: CRLSEASCASHDCTVQLRKRPRC*NWVMEK
Trigger: CTTCTCCATCACCCAGTTCAAGCATCTCGGCCGCTT...CCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS TCA 90 bp CAGGCCACCGGGAGCCGAAGCTTCCAGTCTGTCTCTCCATCCAGCTaGTCCGTGCGCAAGAAGCAAGAGCCGTTTTTCTCTGACGTCCTC +
Preference number: 5 (lower is better)
Translates to: QATGSRSFQSVSPSS*SVRKKQEPFFSDVL
Trigger: GAGGACGTCAGAGAAAAACGGCTCTTGCTTCTTGCGCACGGATCAGCTGGATGGAGAGACAGACTGGAAGCTTCGGCTCCCGGTGGCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS GCA 90 bp ACTTCTTGGCTACCACCAGCACACGTAGTCCCTCCCGGGCCATGTTaGCACACTCCTCCTCCAGCCAGTCGTTGTACTGGACAATGCCAG +
Preference number: 5 (lower is better)
Translates to: TSWLPPAHVVPPGPC*HTPPPASRCTGQCQ
Trigger: CTGGCATTGTCCAGTACAACGACTGGCTGGAGGAGGAGTGTGGCAACATGGCCCGGGAGGGACTACGTGTGCTGGTGGTAGCCAAGAAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGCCGGAGGCCCTGTTGTACTTCTGGTTGTaGATGACATTTCGAGGGTAC +
Preference number: 5 (lower is better)
Translates to: VRVELDLLLGERRRPEALLYFWL*MTFRGY
Trigger: GTACCCTCGAAATGTCATCAACAACCAGAAGTACAA...CAGGGCCTCCGGCCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CAGACGGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGCAGCTGTACACGATCTaGCCCATGTCCAAGTTCACA +
Preference number: 5 (lower is better)
Translates to: QTGHPVPRLPPQHSLAPKQLYTI*PMSKFT
Trigger: TGTGAACTTGGACATGGGCAAGATCGTGTACAGCTG...CTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCCGTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTACGGTCCCGGGGATTTaGGAATCCCTGCGGATCACC +
Preference number: 5 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVTVPGI*ESLRIT
Trigger: GGTGATCCGCAGGGATTCCAAAATCCCCGGGACCGT...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp AGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCTCGTGGTCAGGGTTCCTGTCTaGTCTGTGAGCAAGTACGAA +
Preference number: 5 (lower is better)
Translates to: SEASCASHDCTVQLRRLVVRVPV*SVSKYE
Trigger: TTCGTACTTGCTCACAGACAAGACAGGAACCCTGAC...CACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCAGCGGGCTTCAAAGTCTaGGTACTGCTCCTCTGTGAG +
Preference number: 5 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPAGFKV*VLLLCE
Trigger: CTCACAGAGGAGCAGTACCAAGACTTTGAAGCCCGC...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAAAGCGGCCGAGATGCTaGAACTGGGTGATGGAGAAG +
Preference number: 5 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPKRPRC*NWVMEK
Trigger: CTTCTCCATCACCCAGTTCAAGCATCTCGGCCGCTT...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 90 bp TGGTACACTCGGCAGGAGTCCTCAAACTGCTTCTCAGCCTCAGCCTaGTCCGTCACACCATTGGACTCGTACACGGGTGTCACGTTGTGG +
Preference number: 5 (lower is better)
Translates to: WYTRQESSNCFSASA*SVTPLDSYTGVTLW
Trigger: CCACAACGTGACACCCGTGTACGAGTCCAATGGTGTGACGGACCAGGCTGAGGCTGAGAAGCAGTTTGAGGACTCCTGCCGAGTGTACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CACAGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGCACCAAACAGGATCTaGGTGAGGCAGTTCACCTCC +
Preference number: 5 (lower is better)
Translates to: HSLAPKVLIGTALRPLPPAPNRI*VRQFTS
Trigger: GGAGGTGAACTGCCTCACCAAGATCCTGTTTGGTGC...CGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGTTCTAGGTGGATCCTGGGATaGCTGGGTGTAAATGCTGAA +
Preference number: 5 (lower is better)
Translates to: GPSGPTSSPSAQLSTQGSRWILG*LGVNAE
Trigger: TTCAGCATTTACACCCAGCAATCCCAGGATCCACCT...AGAACCTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCGCCTGCTTCCCTTCCTaGCCCTCCACGCCCACGCCG +
Preference number: 5 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTACFPS*PSTPTP
Trigger: CGGCGTGGGCGTGGAGGGCAAGGAAGGGAAGCAGGC...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CAA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGAAGCGGCCGAGATGCTaGAACTGGGTGATGGAGAAG +
Preference number: 5 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQKRPRC*NWVMEK
Trigger: CTTCTCCATCACCCAGTTCAAGCATCTCGGCCGCTT...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS GCA 90 bp CTGATAGGAATGATGTTGGAAAACAGGAGCAGGAAGCGGATGATCTaGAGGTACCAGCGGCCGGCAAAGTGCTGCAGGGCCACCATGACC +
Preference number: 5 (lower is better)
Translates to: LIGMMLENRSRKRMI*RYQRPAKCCRATMT
Trigger: GGTCATGGTGGCCCTGCAGCACTTTGCCGGCCGCTGGTACCTGCAGATCATCCGCTTCCTGCTCCTGTTTTCCAACATCATTCCTATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 90 bp GCTGCTCAGGAATTGTGCTGGAACGAACCACGGTCCCGGGGATTTTaGAATCCCTGCGGATCACCCAGCTGTACACGATCTTGCCCATGT +
Preference number: 5 (lower is better)
Translates to: AAQELCWNEPRSRGF*NPCGSPSCTRSCPC
Trigger: ACATGGGCAAGATCGTGTACAGCTGGGTGATCCGCAGGGATTCCAAAATCCCCGGGACCGTGGTTCGTTCCAGCACAATTCCTGAGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 90 bp TGGGCCTCCCCGCGGTTGGTCACCAGTCGGAAAACATGGATATCTTaGTTTCTGGTCACCAGATGTGCGTTCTTGGCTGTGCACGTGGCT +
Preference number: 5 (lower is better)
Translates to: WASPRLVTSRKTWIS*FLVTRCAFLAVHVA
Trigger: AGCCACGTGCACAGCCAAGAACGCACATCTGGTGACCAGAAACCAAGATATCCATGTTTTCCGACTGGTGACCAACCGCGGGGAGGCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CTGAGGCGGCTCGTGCGTGTGGAACTTGACCTCCTCCTGGGAGAGCGCCGGAGGAAATTGTACTTCTGGTaGTTGATGACATTTCGAGGG +
Preference number: 5 (lower is better)
Translates to: LRRLVRVELDLLLGERRRKLYFW*LMTFRG
Trigger: CCCTCGAAATGTCATCAACAACCAGAAGTACAATTT...CCTCCGGCGCTCTCCCAGGAGGAGGTCAAGTTCCACACGCACGAGCCGCCTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCGCACCAAACAGGATCTaGGTGAGGCAGTTCACCTCC +
Preference number: 5 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSAPNRI*VRQFTS
Trigger: GGAGGTGAACTGCCTCACCAAGATCCTGTTTGGTGC...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCCTGATAGGAATGATGTaGGAAAACAGGAGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: VPSVASAKPHVPAMTAPSLIGMM*ENRSRK
Trigger: CTTCCTGCTCCTGTTTTCCAACATCATTCCTATCAG...GGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACCAGCTGTACACGATCTaGCCCATGTCCAAGTTCACA +
Preference number: 5 (lower is better)
Translates to: SPLGAQCRLSEASCASHDQLYTI*PMSKFT
Trigger: TGTGAACTTGGACATGGGCAAGATCGTGTACAGCTG...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCACAGCTGTACACGATCTaGCCCATGTCCAAGTTCACA +
Preference number: 5 (lower is better)
Translates to: APKVLIGTALRPLPPVPPQLYTI*PMSKFT
Trigger: TGTGAACTTGGACATGGGCAAGATCGTGTACAGCTG...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGGTCAGGGTTCCTGTCTaGTCTGTGAGCAAGTACGAA +
Preference number: 5 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQVRVPV*SVSKYE
Trigger: TTCGTACTTGCTCACAGACAAGACAGGAACCCTGAC...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCAGAGGTGGATCCTGGGATaGCTGGGTGTAAATGCTGAA +
Preference number: 5 (lower is better)
Translates to: SQAPPSGSTNVPSPLGAQRWILG*LGVNAE
Trigger: TTCAGCATTTACACCCAGCAATCCCAGGATCCACCT...CTGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 90 bp CCCCGCGGTTGGTCACCAGTCGGAAAACATGGATATCTTGGTTTCTaGTCACCAGATGTGCGTTCTTGGCTGTGCACGTGGCTGTCTCCA +
Preference number: 5 (lower is better)
Translates to: PRGWSPVGKHGYLGF*SPDVRSWLCTWLSP
Trigger: TGGAGACAGCCACGTGCACAGCCAAGAACGCACATCTGGTGACCAGAAACCAAGATATCCATGTTTTCCGACTGGTGACCAACCGCGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp AGCGAAGCCTCATGTGCCAGCCATGACTGCACCGTCCAGCTGAGGCGGCTCGTGTTGTACTTCTGGTTGTaGATGACATTTCGAGGGTAC +
Preference number: 5 (lower is better)
Translates to: SEASCASHDCTVQLRRLVLYFWL*MTFRGY
Trigger: GTACCCTCGAAATGTCATCAACAACCAGAAGTACAA...CACGAGCCGCCTCAGCTGGACGGTGCAGTCATGGCTGGCACATGAGGCTTCGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCTCCCACCTGGATGTTaGAACTCTTCACCTTCACGG +
Preference number: 5 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSLPPGC*NSSPSR
Trigger: CCGTGAAGGTGAAGAGTTCAAACATCCAGGTGGGAG...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGACGGTCCCGGGGATTTaGGAATCCCTGCGGATCACC +
Preference number: 5 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGTVPGI*ESLRIT
Trigger: GGTGATCCGCAGGGATTCCAAAATCCCCGGGACCGT...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CACAGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTCAGGGTTCCTGTCTaGTCTGTGAGCAAGTACGAA +
Preference number: 5 (lower is better)
Translates to: HSLAPKVLIGTALRPLPPVRVPV*SVSKYE
Trigger: TTCGTACTTGCTCACAGACAAGACAGGAACCCTGAC...CGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGAGGTGGATCCTGGGATaGCTGGGTGTAAATGCTGAA +
Preference number: 5 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQRWILG*LGVNAE
Trigger: TTCAGCATTTACACCCAGCAATCCCAGGATCCACCT...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATGCGGGCTTCAAAGTCTaGGTACTGCTCCTCTGTGAG +
Preference number: 5 (lower is better)
Translates to: VLIGTALRPLPPVPPMFHAGFKV*VLLLCE
Trigger: CTCACAGAGGAGCAGTACCAAGACTTTGAAGCCCGC...ATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS GCA 90 bp GGAGTTCATCTCCTTGTCACGCACATAACATCGGATCTCCTCTACTaGCTCACGGATGATGGTGACAGCCAGCACGAAGCCCAGAGGAAC +
Preference number: 5 (lower is better)
Translates to: GVHLLVTHITSDLLY*LTDDGDSQHEAQRN
Trigger: GTTCCTCTGGGCTTCGTGCTGGCTGTCACCATCATCCGTGAGGCAGTAGAGGAGATCCGATGTTATGTGCGTGACAAGGAGATGAACTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000151610.8
ENSMUST00000156397.8
ENSMUST00000178504.8
CDS GCA 90 bp AGGGTTCCTGTCTTGTCTGTGAGCAAGTACGAAATCCTGCCCAGCTaGTCAGGAATTGTGCTGGAACGAACCACGGTCCCGGGGATTTTG +
Preference number: 5 (lower is better)
Translates to: RVPVLSVSKYEILPS*SGIVLERTTVPGIL
Trigger: CAAAATCCCCGGGACCGTGGTTCGTTCCAGCACAATTCCTGAGCAGCTGGGCAGGATTTCGTACTTGCTCACAGACAAGACAGGAACCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACCTGATAGGAATGATGTaGGAAAACAGGAGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: SPLGAQCRLSEASCASHDLIGMM*ENRSRK
Trigger: CTTCCTGCTCCTGTTTTCCAACATCATTCCTATCAG...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCGTCAGGGTTCCTGTCTaGTCTGTGAGCAAGTACGAA +
Preference number: 5 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSVRVPV*SVSKYE
Trigger: TTCGTACTTGCTCACAGACAAGACAGGAACCCTGAC...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCAGGTGGATCCTGGGATaGCTGGGTGTAAATGCTGAA +
Preference number: 5 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSRWILG*LGVNAE
Trigger: TTCAGCATTTACACCCAGCAATCCCAGGATCCACCT...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGACCAGATGTGCGTTCTaGGCTGTGCACGTGGCTGTC +
Preference number: 5 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGTRCAF*AVHVAV
Trigger: GACAGCCACGTGCACAGCCAAGAACGCACATCTGGT...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GGGCCATCCGGTCCCACGTCTTCCCCCTCAGCACAGCTTAGCACCCAAGGTTCTGAAAACATGGATATCTaGGTTTCTGGTCACCAGATG +
Preference number: 5 (lower is better)
Translates to: GPSGPTSSPSAQLSTQGSENMDI*VSGHQM
Trigger: CATCTGGTGACCAGAAACCAAGATATCCATGTTTTC...AGAACCTTGGGTGCTAAGCTGTGCTGAGGGGGAAGACGTGGGACCGGATGGCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS GCA 90 bp CACCAGTCGGAAAACATGGATATCTTGGTTTCTGGTCACCAGATGTaGGTTCTTGGCTGTGCACGTGGCTGTCTCCAGCTTGTCCCCTGT +
Preference number: 5 (lower is better)
Translates to: HQSENMDILVSGHQM*VLGCARGCLQLVPC
Trigger: ACAGGGGACAAGCTGGAGACAGCCACGTGCACAGCCAAGAACGCACATCTGGTGACCAGAAACCAAGATATCCATGTTTTCCGACTGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 90 bp AAGAAATTGTACTTCTGGTTGTTGATGACATTTCGAGGGTACCGCTaGTCCCTCTTCTCGGGGTGTCCCAACCAGACAGTACGGGGCCTG +
Preference number: 5 (lower is better)
Translates to: KKLYFWLLMTFRGYR*SLFSGCPNQTVRGL
Trigger: CAGGCCCCGTACTGTCTGGTTGGGACACCCCGAGAAGAGGGACCAGCGGTACCCTCGAAATGTCATCAACAACCAGAAGTACAATTTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000123156.8
ENSMUST00000156397.8
ENSMUST00000156555.2
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACTTGTACTTCTGGTTGTaGATGACATTTCGAGGGTAC +
Preference number: 5 (lower is better)
Translates to: SPLGAQCRLSEASCASHDLYFWL*MTFRGY
Trigger: GTACCCTCGAAATGTCATCAACAACCAGAAGTACAA...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCCCATTAGGTGCCCATTGTACTTCTGGTTGTaGATGACATTTCGAGGGTAC +
Preference number: 5 (lower is better)
Translates to: LSGPSLRFHQCSIPIRCPLYFWL*MTFRGY
Trigger: GTACCCTCGAAATGTCATCAACAACCAGAAGTACAA...TGGGCACCTAATGGGGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGGCACCAAACAGGATCTaGGTGAGGCAGTTCACCTCC +
Preference number: 5 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGAPNRI*VRQFTS
Trigger: GGAGGTGAACTGCCTCACCAAGATCCTGTTTGGTGC...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CACAGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGCTGATAGGAATGATGTaGGAAAACAGGAGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: HSLAPKVLIGTALRPLPPLIGMM*ENRSRK
Trigger: CTTCCTGCTCCTGTTTTCCAACATCATTCCTATCAG...CGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAGAAAACATGGATATCTaGGTTTCTGGTCACCAGATG +
Preference number: 5 (lower is better)
Translates to: APKVLIGTALRPLPPVPPENMDI*VSGHQM
Trigger: CATCTGGTGACCAGAAACCAAGATATCCATGTTTTC...TGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCAGAAAACATGGATATCTaGGTTTCTGGTCACCAGATG +
Preference number: 5 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPENMDI*VSGHQM
Trigger: CATCTGGTGACCAGAAACCAAGATATCCATGTTTTC...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCATGACGAAAACATGGATATCTaGGTTTCTGGTCACCAGATG +
Preference number: 5 (lower is better)
Translates to: SPLGAQCRLSEASCASHDENMDI*VSGHQM
Trigger: CATCTGGTGACCAGAAACCAAGATATCCATGTTTTC...GTCATGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS TCA 90 bp GGGGAGACAGCTGACCAAGGTGATGACGGACACCTTCCAGAGGAATaGCAGGGTGGCAATGAAGTAGACATCGATGAACTCATGGAGGAA +
Preference number: 5 (lower is better)
Translates to: GETADQGDDGHLPEE*QGGNEVDIDELMEE
Trigger: TTCCTCCATGAGTTCATCGATGTCTACTTCATTGCCACCCTGTCATTCCTCTGGAAGGTGTCCGTCATCACCTTGGTCAGCTGTCTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGCCAAAATTGTACTTCTGGTaGTTGATGACATTTCGAGGG +
Preference number: 5 (lower is better)
Translates to: SIPIRCPVSPQRSLMCQPKLYFW*LMTFRG
Trigger: CCCTCGAAATGTCATCAACAACCAGAAGTACAATTT...TGGCTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp AGCTTAGCACCCAAGGTTCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCTGATAGGAATGATGTaGGAAAACAGGAGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: SLAPKVLIGTALRPLPPVLIGMM*ENRSRK
Trigger: CTTCCTGCTCCTGTTTTCCAACATCATTCCTATCAG...AACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGAACCTTGGGTGCTAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCCCAGCTGCTCAGGAATaGTGCTGGAACGAACCACGG +
Preference number: 5 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTPAAQE*CWNEPR
Trigger: CCGTGGTTCGTTCCAGCACAATTCCTGAGCAGCTGG...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS TCA 90 bp CCAGGTCGAACAGGCCAATCTTACTTCTGGGGTCGGAAGTATTCATaGCACTCCGCAGTTCTCTGCCAGTGTAGAGAACAACGCCTACAA +
Preference number: 5 (lower is better)
Translates to: PGRTGQSYFWGRKYS*HSAVLCQCREQRLQ
Trigger: TTGTAGGCGTTGTTCTCTACACTGGCAGAGAACTGCGGAGTGTCATGAATACTTCCGACCCCAGAAGTAAGATTGGCCTGTTCGACCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TGTTCCATCCCCATTAGGTGCCCAGTGTCGCCTCAGCGAAGCCTCATGTGCCAGAAATTGTACTTCTGGTaGTTGATGACATTTCGAGGG +
Preference number: 5 (lower is better)
Translates to: CSIPIRCPVSPQRSLMCQKLYFW*LMTFRG
Trigger: CCCTCGAAATGTCATCAACAACCAGAAGTACAATTT...CTGGCACATGAGGCTTCGCTGAGGCGACACTGGGCACCTAATGGGGATGGAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCGCGGGCTTCAAAGTCTaGGTACTGCTCCTCTGTGAG +
Preference number: 5 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTAGFKV*VLLLCE
Trigger: CTCACAGAGGAGCAGTACCAAGACTTTGAAGCCCGC...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CAA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCGAAAACATGGATATCTaGGTTTCTGGTCACCAGATG +
Preference number: 5 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSENMDI*VSGHQM
Trigger: CATCTGGTGACCAGAAACCAAGATATCCATGTTTTC...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp TCTGATAGGTACAGCTCTCAGGCCCCTCCCTCCGGTTCCACCAATGTTCCATCCAAATTGTACTTCTGGTaGTTGATGACATTTCGAGGG +
Preference number: 5 (lower is better)
Translates to: SDRYSSQAPPSGSTNVPSKLYFW*LMTFRG
Trigger: CCCTCGAAATGTCATCAACAACCAGAAGTACAATTT...GGATGGAACATTGGTGGAACCGGAGGGAGGGGCCTGAGAGCTGTACCTATCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCCTCCCACCTGGATGTTaGAACTCTTCACCTTCACGG +
Preference number: 5 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTLPPGC*NSSPSR
Trigger: CCGTGAAGGTGAAGAGTTCAAACATCCAGGTGGGAG...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CAA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAACCAGCTGCTCAGGAATaGTGCTGGAACGAACCACGG +
Preference number: 5 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQPAAQE*CWNEPR
Trigger: CCGTGGTTCGTTCCAGCACAATTCCTGAGCAGCTGG...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CAA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAACCCAGGTGCAGCCGCTaGAACACCATCTCATTCTGG +
Preference number: 5 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQPRCSR*NTISFW
Trigger: CCAGAATGAGATGGTGTTCAAGCGGCTGCACCTGGG...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CAA 90 bp TATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCAGATGTGCGTTCTaGGCTGTGCACGTGGCTGTC +
Preference number: 5 (lower is better)
Translates to: YHMTRGSNHKEACTVTPQTRCAF*AVHVAV
Trigger: GACAGCCACGTGCACAGCCAAGAACGCACATCTGGT...TTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CAA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCACTCCCACCTGGATGTTaGAACTCTTCACCTTCACGG +
Preference number: 5 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSLPPGC*NSSPSR
Trigger: CCGTGAAGGTGAAGAGTTCAAACATCCAGGTGGGAG...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CAA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGCTGATAGGAATGATGTaGGAAAACAGGAGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGLIGMM*ENRSRK
Trigger: CTTCCTGCTCCTGTTTTCCAACATCATTCCTATCAG...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp CACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCGTCAGGGTTCCTGTCTaGTCTGTGAGCAAGTACGAA +
Preference number: 5 (lower is better)
Translates to: HMTRGSNHKEACTVTPQTVRVPV*SVSKYE
Trigger: TTCGTACTTGCTCACAGACAAGACAGGAACCCTGAC...GGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CAA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCCAGGTGCAGCCGCTaGAACACCATCTCATTCTGG +
Preference number: 5 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTPRCSR*NTISFW
Trigger: CCAGAATGAGATGGTGTTCAAGCGGCTGCACCTGGG...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CAA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGTTGTACTTCTGGTTGTaGATGACATTTCGAGGGTAC +
Preference number: 5 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGLYFWL*MTFRGY
Trigger: GTACCCTCGAAATGTCATCAACAACCAGAAGTACAA...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp ATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCACAGCTGTACACGATCTaGCCCATGTCCAAGTTCACA +
Preference number: 5 (lower is better)
Translates to: MTRGSNHKEACTVTPQTSQLYTI*PMSKFT
Trigger: TGTGAACTTGGACATGGGCAAGATCGTGTACAGCTG...TGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS-3UTR CAA 90 bp AGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCCCACAAACCTCAGACGGGAAATTGTACTTCTGGTaGTTGATGACATTTCGAGGG +
Preference number: 5 (lower is better)
Translates to: RGSNHKEACTVTPQTSDGKLYFW*LMTFRG
Trigger: CCCTCGAAATGTCATCAACAACCAGAAGTACAATTT...CCCGTCTGAGGTTTGTGGGGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS-3UTR CAA 90 bp GACTTTTATCACATGACAAGAGGTTCAAACCATAAGGAAGCTTGCACAGTGACCAGGTGGATCCTGGGATaGCTGGGTGTAAATGCTGAA +
Preference number: 5 (lower is better)
Translates to: DFYHMTRGSNHKEACTVTRWILG*LGVNAE
Trigger: TTCAGCATTTACACCCAGCAATCCCAGGATCCACCT...GGTCACTGTGCAAGCTTCCTTATGGTTTGAACCTCTTGTCATGTGATAAAAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
CDS GCA 72 bp CACTCGCGCGCACAGCCTGCCTCCTCTGCTGCAACCTaGGCCTCGCGCTGGGGTCCCCCGAGTTTCGGGCCG +
Preference number: 6 (lower is better)
Translates to: HSRAQPASSAAT*ASRWGPPSFGP
Trigger: CGGCCCGAAACTCGGGGGACCCCAGCGCGAGGCGCAGGTTGCAGCAGAGGAGGCAGGCTGTGCGCGCGAGTG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156397.8
CDS CAA 72 bp CAGCACCCCGCGCGCGGCCTACTGTCCACCCGCTTCTaGTGGCGCACGGGCTGCAGCGGGATGCTGTCCGTC +
Preference number: 6 (lower is better)
Translates to: QHPARGLLSTRF*WRTGCSGMLSV
Trigger: GACGGACAGCATCCCGCTGCAGCCCGTGCGCCACAAGAAGCGGGTGGACAGTAGGCCGCGCGCGGGGTGCTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029060.11
ENSMUST00000109176.8
ENSMUST00000178504.8
CDS GCA 72 bp GGCCTACTGTCCACCCGCTTCTTGTGGCGCACGGGCTaGAGCGGGATGCTGTCCGTCATGTCGCCGCCCGCC +
Preference number: 6 (lower is better)
Translates to: GLLSTRFLWRTG*SGMLSVMSPPA
Trigger: GGCGGGCGGCGACATGACGGACAGCATCCCGCTGCAGCCCGTGCGCCACAAGAAGCGGGTGGACAGTAGGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109176.8
CDS CCA 72 bp CACCCCGCGCGCGGCCTACTGTCCACCCGCTTCTTGTaGCGCACGGGCTGCAGCGGGATGCTGTCCGTCATG +
Preference number: 6 (lower is better)
Translates to: HPARGLLSTRFL*RTGCSGMLSVM
Trigger: CATGACGGACAGCATCCCGCTGCAGCCCGTGCGCCACAAGAAGCGGGTGGACAGTAGGCCGCGCGCGGGGTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109176.8
CDS CAA 90 bp AGCCACTCACAGCACCCCGCGCGCGGCCTACTGTCCACCCGCTTCTaGTGGCGCACGGGCTGCAGCGGGATGCTGTCCGTCATGTCGCCG +
Preference number: 6 (lower is better)
Translates to: SHSQHPARGLLSTRF*WRTGCSGMLSVMSP
Trigger: CGGCGACATGACGGACAGCATCCCGCTGCAGCCCGTGCGCCACAAGAAGCGGGTGGACAGTAGGCCGCGCGCGGGGTGCTGTGAGTGGCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109176.8
CDS TCA 72 bp GGTACCAGCGGCCGGCAAAGTGCTGCAGGGCCACCATaGCCAGCGACACCACCACCAGCGCACCAAACAGGA +
Preference number: 6 (lower is better)
Translates to: GTSGRQSAAGPP*PATPPPAHQTG
Trigger: TCCTGTTTGGTGCGCTGGTGGTGGTGTCGCTGGTCATGGTGGCCCTGCAGCACTTTGCCGGCCGCTGGTACC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS TCA 72 bp GGACACGGCTGCTCATGGTCCTCCGAACCTTGGTGGTaGCCGTGGGGCCCTTCTGAGCAGGTGGATCCTGGG +
Preference number: 6 (lower is better)
Translates to: GHGCSWSSEPWW*PWGPSEQVDPG
Trigger: CCCAGGATCCACCTGCTCAGAAGGGCCCCACGGTCACCACCAAGGTTCGGAGGACCATGAGCAGCCGTGTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS GCA 72 bp CGGATGATCTGCAGGTACCAGCGGCCGGCAAAGTGCTaGAGGGCCACCATGACCAGCGACACCACCACCAGC +
Preference number: 6 (lower is better)
Translates to: RMICRYQRPAKC*RATMTSDTTTS
Trigger: GCTGGTGGTGGTGTCGCTGGTCATGGTGGCCCTGCAGCACTTTGCCGGCCGCTGGTACCTGCAGATCATCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS GCA 72 bp TCTGCAGGAGGTCAGCAGCCGTGGGAAGCCTCTGTGTaGAGGCCACCGGGAGCCGAAGCTTCCAGTCTGTCT +
Preference number: 6 (lower is better)
Translates to: SAGGQQPWEASV*RPPGAEASSLS
Trigger: AGACAGACTGGAAGCTTCGGCTCCCGGTGGCCTGCACACAGAGGCTTCCCACGGCTGCTGACCTCCTGCAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS GCA 72 bp AAGCGGATGATCTGCAGGTACCAGCGGCCGGCAAAGTaGTGCAGGGCCACCATGACCAGCGACACCACCACC +
Preference number: 6 (lower is better)
Translates to: KRMICRYQRPAK*CRATMTSDTTT
Trigger: GGTGGTGGTGTCGCTGGTCATGGTGGCCCTGCAGCACTTTGCCGGCCGCTGGTACCTGCAGATCATCCGCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 72 bp ACACATAGGACCGAATCTGCAGGAGGTCAGCAGCCGTaGGAAGCCTCTGTGTGCAGGCCACCGGGAGCCGAA +
Preference number: 6 (lower is better)
Translates to: THRTESAGGQQP*EASVCRPPGAE
Trigger: TTCGGCTCCCGGTGGCCTGCACACAGAGGCTTCCCACGGCTGCTGACCTCCTGCAGATTCGGTCCTATGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 72 bp GATTCAGGACCTGGTCACCAGGGGTCCTCAGCTGCATaGAGGACTGGTCTCGACCCACCAGCGTCAGTCCCA +
Preference number: 6 (lower is better)
Translates to: DSGPGHQGSSAA*RTGLDPPASVP
Trigger: TGGGACTGACGCTGGTGGGTCGAGACCAGTCCTCCATGCAGCTGAGGACCCCTGGTGACCAGGTCCTGAATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CAA 72 bp GCTACCACCAGCACACGTAGTCCCTCCCGGGCCATGTaGCCACACTCCTCCTCCAGCCAGTCGTTGTACTGG +
Preference number: 6 (lower is better)
Translates to: ATTSTRSPSRAM*PHSSSSQSLYW
Trigger: CCAGTACAACGACTGGCTGGAGGAGGAGTGTGGCAACATGGCCCGGGAGGGACTACGTGTGCTGGTGGTAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS GCA 72 bp GTGAGATTCAGGACCTGGTCACCAGGGGTCCTCAGCTaGATGGAGGACTGGTCTCGACCCACCAGCGTCAGT +
Preference number: 6 (lower is better)
Translates to: VRFRTWSPGVLS*MEDWSRPTSVS
Trigger: ACTGACGCTGGTGGGTCGAGACCAGTCCTCCATGCAGCTGAGGACCCCTGGTGACCAGGTCCTGAATCTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS GCA 72 bp CTACCACCAGCACACGTAGTCCCTCCCGGGCCATGTTaGCACACTCCTCCTCCAGCCAGTCGTTGTACTGGA +
Preference number: 6 (lower is better)
Translates to: LPPAHVVPPGPC*HTPPPASRCTG
Trigger: TCCAGTACAACGACTGGCTGGAGGAGGAGTGTGGCAACATGGCCCGGGAGGGACTACGTGTGCTGGTGGTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CAA 90 bp TCAGCCTGGTCCGTCACACCATTGGACTCGTACACGGGTGTCACGTaGTGGCAGAGTGCAATGGCCTTCACAGCCTCGTGGACACGGCTG +
Preference number: 6 (lower is better)
Translates to: SAWSVTPLDSYTGVT*WQSAMAFTASWTRL
Trigger: CAGCCGTGTCCACGAGGCTGTGAAGGCCATTGCACTCTGCCACAACGTGACACCCGTGTACGAGTCCAATGGTGTGACGGACCAGGCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 72 bp ACGTTGTGGCAGAGTGCAATGGCCTTCACAGCCTCGTaGACACGGCTGCTCATGGTCCTCCGAACCTTGGTG +
Preference number: 6 (lower is better)
Translates to: TLWQSAMAFTAS*TRLLMVLRTLV
Trigger: CACCAAGGTTCGGAGGACCATGAGCAGCCGTGTCCACGAGGCTGTGAAGGCCATTGCACTCTGCCACAACGT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 72 bp CACTGGACCAGAGCCACCTCATCCGGGCTGGATGCCTaGTACACTCGGCAGGAGTCCTCAAACTGCTTCTCA +
Preference number: 6 (lower is better)
Translates to: HWTRATSSGLDA*YTRQESSNCFS
Trigger: TGAGAAGCAGTTTGAGGACTCCTGCCGAGTGTACCAGGCATCCAGCCCGGATGAGGTGGCTCTGGTCCAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CAA 72 bp ACCAGCGACACCACCACCAGCGCACCAAACAGGATCTaGGTGAGGCAGTTCACCTCCAGGTCGAACAGGCCA +
Preference number: 6 (lower is better)
Translates to: TSDTTTSAPNRI*VRQFTSRSNRP
Trigger: TGGCCTGTTCGACCTGGAGGTGAACTGCCTCACCAAGATCCTGTTTGGTGCGCTGGTGGTGGTGTCGCTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CAA 90 bp GACTTCTTGGCTACCACCAGCACACGTAGTCCCTCCCGGGCCATGTaGCCACACTCCTCCTCCAGCCAGTCGTTGTACTGGACAATGCCA +
Preference number: 6 (lower is better)
Translates to: DFLATTSTRSPSRAM*PHSSSSQSLYWTMP
Trigger: TGGCATTGTCCAGTACAACGACTGGCTGGAGGAGGAGTGTGGCAACATGGCCCGGGAGGGACTACGTGTGCTGGTGGTAGCCAAGAAGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CAA 90 bp GTGGGCCTCCCCGCGGTTGGTCACCAGTCGGAAAACATGGATATCTaGGTTTCTGGTCACCAGATGTGCGTTCTTGGCTGTGCACGTGGC +
Preference number: 6 (lower is better)
Translates to: VGLPAVGHQSENMDI*VSGHQMCVLGCARG
Trigger: GCCACGTGCACAGCCAAGAACGCACATCTGGTGACCAGAAACCAAGATATCCATGTTTTCCGACTGGTGACCAACCGCGGGGAGGCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS TCA 72 bp GCGACACCACCACCAGCGCACCAAACAGGATCTTGGTaGGGCAGTTCACCTCCAGGTCGAACAGGCCAATCT +
Preference number: 6 (lower is better)
Translates to: ATPPPAHQTGSW*GSSPPGRTGQS
Trigger: AGATTGGCCTGTTCGACCTGGAGGTGAACTGCCTCACCAAGATCCTGTTTGGTGCGCTGGTGGTGGTGTCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 72 bp AACCCAGTAGGTGTACAGGGCGCCAAGCCTCATCTCTaGGACGAACTGCGAGCAGGCGAGAAGCAGGAAGTA +
Preference number: 6 (lower is better)
Translates to: NPVGVQGAKPHL*DELRAGEKQEV
Trigger: TACTTCCTGCTTCTCGCCTGCTCGCAGTTCGTCCCAGAGATGAGGCTTGGCGCCCTGTACACCTACTGGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000123156.8
ENSMUST00000156397.8
ENSMUST00000156555.2
ENSMUST00000178504.8
CDS CAA 72 bp TCCGTCACACCATTGGACTCGTACACGGGTGTCACGTaGTGGCAGAGTGCAATGGCCTTCACAGCCTCGTGG +
Preference number: 6 (lower is better)
Translates to: SVTPLDSYTGVT*WQSAMAFTASW
Trigger: CCACGAGGCTGTGAAGGCCATTGCACTCTGCCACAACGTGACACCCGTGTACGAGTCCAATGGTGTGACGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CAA 90 bp GCCACCATGACCAGCGACACCACCACCAGCGCACCAAACAGGATCTaGGTGAGGCAGTTCACCTCCAGGTCGAACAGGCCAATCTTACTT +
Preference number: 6 (lower is better)
Translates to: ATMTSDTTTSAPNRI*VRQFTSRSNRPILL
Trigger: AAGTAAGATTGGCCTGTTCGACCTGGAGGTGAACTGCCTCACCAAGATCCTGTTTGGTGCGCTGGTGGTGGTGTCGCTGGTCATGGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CAA 90 bp AGCTGCTCAGGAATTGTGCTGGAACGAACCACGGTCCCGGGGATTTaGGAATCCCTGCGGATCACCCAGCTGTACACGATCTTGCCCATG +
Preference number: 6 (lower is better)
Translates to: SCSGIVLERTTVPGI*ESLRITQLYTILPM
Trigger: CATGGGCAAGATCGTGTACAGCTGGGTGATCCGCAGGGATTCCAAAATCCCCGGGACCGTGGTTCGTTCCAGCACAATTCCTGAGCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS TCA 72 bp TCTGCCAGTGTAGAGAACAACGCCTACAACAGTGCCTaGTGCTATGACGGTGCCGGCCCACAGCGTGTTCTC +
Preference number: 6 (lower is better)
Translates to: SASVENNAYNSA*CYDGAGPQRVL
Trigger: GAGAACACGCTGTGGGCCGGCACCGTCATAGCATCAGGCACTGTTGTAGGCGTTGTTCTCTACACTGGCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS GCA 72 bp TGGAACGAACCACGGTCCCGGGGATTTTGGAATCCCTaGGGATCACCCAGCTGTACACGATCTTGCCCATGT +
Preference number: 6 (lower is better)
Translates to: WNEPRSRGFWNP*GSPSCTRSCPC
Trigger: ACATGGGCAAGATCGTGTACAGCTGGGTGATCCGCAGGGATTCCAAAATCCCCGGGACCGTGGTTCGTTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 72 bp GTCACACCATTGGACTCGTACACGGGTGTCACGTTGTaGCAGAGTGCAATGGCCTTCACAGCCTCGTGGACA +
Preference number: 6 (lower is better)
Translates to: VTPLDSYTGVTL*QSAMAFTASWT
Trigger: TGTCCACGAGGCTGTGAAGGCCATTGCACTCTGCCACAACGTGACACCCGTGTACGAGTCCAATGGTGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CAA 72 bp GGAATTGTGCTGGAACGAACCACGGTCCCGGGGATTTaGGAATCCCTGCGGATCACCCAGCTGTACACGATC +
Preference number: 6 (lower is better)
Translates to: GIVLERTTVPGI*ESLRITQLYTI
Trigger: GATCGTGTACAGCTGGGTGATCCGCAGGGATTCCAAAATCCCCGGGACCGTGGTTCGTTCCAGCACAATTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS TCA 72 bp CTGATCCGTGCGCAAGAAGCAAGAGCCGTTTTTCTCTaGCGTCCTCAGGAAGATCATGTCAGCAGGGACCCG +
Preference number: 6 (lower is better)
Translates to: LIRAQEARAVFL*RPQEDHVSRDP
Trigger: CGGGTCCCTGCTGACATGATCTTCCTGAGGACGTCAGAGAAAAACGGCTCTTGCTTCTTGCGCACGGATCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS TCA 72 bp GGGAGCCGAAGCTTCCAGTCTGTCTCTCCATCCAGCTaGTCCGTGCGCAAGAAGCAAGAGCCGTTTTTCTCT +
Preference number: 6 (lower is better)
Translates to: GSRSFQSVSPSS*SVRKKQEPFFS
Trigger: AGAGAAAAACGGCTCTTGCTTCTTGCGCACGGATCAGCTGGATGGAGAGACAGACTGGAAGCTTCGGCTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS GCA 72 bp CTCCTTGTCACGCACATAACATCGGATCTCCTCTACTaGCTCACGGATGATGGTGACAGCCAGCACGAAGCC +
Preference number: 6 (lower is better)
Translates to: LLVTHITSDLLY*LTDDGDSQHEA
Trigger: GGCTTCGTGCTGGCTGTCACCATCATCCGTGAGGCAGTAGAGGAGATCCGATGTTATGTGCGTGACAAGGAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000123156.8
ENSMUST00000151610.8
ENSMUST00000156397.8
ENSMUST00000178504.8
CDS GCA 72 bp GTCTTGTCTGTGAGCAAGTACGAAATCCTGCCCAGCTaGTCAGGAATTGTGCTGGAACGAACCACGGTCCCG +
Preference number: 6 (lower is better)
Translates to: VLSVSKYEILPS*SGIVLERTTVP
Trigger: CGGGACCGTGGTTCGTTCCAGCACAATTCCTGAGCAGCTGGGCAGGATTTCGTACTTGCTCACAGACAAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 72 bp GAATTGTGCTGGAACGAACCACGGTCCCGGGGATTTTaGAATCCCTGCGGATCACCCAGCTGTACACGATCT +
Preference number: 6 (lower is better)
Translates to: ELCWNEPRSRGF*NPCGSPSCTRS
Trigger: AGATCGTGTACAGCTGGGTGATCCGCAGGGATTCCAAAATCCCCGGGACCGTGGTTCGTTCCAGCACAATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 72 bp AGTACGAAATCCTGCCCAGCTGCTCAGGAATTGTGCTaGAACGAACCACGGTCCCGGGGATTTTGGAATCCC +
Preference number: 6 (lower is better)
Translates to: STKSCPAAQELC*NEPRSRGFWNP
Trigger: GGGATTCCAAAATCCCCGGGACCGTGGTTCGTTCCAGCACAATTCCTGAGCAGCTGGGCAGGATTTCGTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 72 bp AACCTTGGTGGTGACCGTGGGGCCCTTCTGAGCAGGTaGATCCTGGGATTGCTGGGTGTAAATGCTGAAGAT +
Preference number: 6 (lower is better)
Translates to: NLGGDRGALLSR*ILGLLGVNAED
Trigger: ATCTTCAGCATTTACACCCAGCAATCCCAGGATCCACCTGCTCAGAAGGGCCCCACGGTCACCACCAAGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 72 bp GGATATCTTGGTTTCTGGTCACCAGATGTGCGTTCTTaGCTGTGCACGTGGCTGTCTCCAGCTTGTCCCCTG +
Preference number: 6 (lower is better)
Translates to: GYLGFWSPDVRS*LCTWLSPACPL
Trigger: CAGGGGACAAGCTGGAGACAGCCACGTGCACAGCCAAGAACGCACATCTGGTGACCAGAAACCAAGATATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 72 bp TGGGCCTCCCCGCGGTTGGTCACCAGTCGGAAAACATaGATATCTTGGTTTCTGGTCACCAGATGTGCGTTC +
Preference number: 6 (lower is better)
Translates to: WASPRLVTSRKT*ISWFLVTRCAF
Trigger: GAACGCACATCTGGTGACCAGAAACCAAGATATCCATGTTTTCCGACTGGTGACCAACCGCGGGGAGGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS TCA 72 bp TGTAGAGAACAACGCCTACAACAGTGCCTGATGCTATaGCGGTGCCGGCCCACAGCGTGTTCTCAATGCTCA +
Preference number: 6 (lower is better)
Translates to: CREQRLQQCLML*RCRPTACSQCS
Trigger: TGAGCATTGAGAACACGCTGTGGGCCGGCACCGTCATAGCATCAGGCACTGTTGTAGGCGTTGTTCTCTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS GCA 72 bp GCAAGTACGAAATCCTGCCCAGCTGCTCAGGAATTGTaGTGGAACGAACCACGGTCCCGGGGATTTTGGAAT +
Preference number: 6 (lower is better)
Translates to: ASTKSCPAAQEL*WNEPRSRGFWN
Trigger: ATTCCAAAATCCCCGGGACCGTGGTTCGTTCCAGCACAATTCCTGAGCAGCTGGGCAGGATTTCGTACTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CAA 72 bp TGGATATCTTGGTTTCTGGTCACCAGATGTGCGTTCTaGGCTGTGCACGTGGCTGTCTCCAGCTTGTCCCCT +
Preference number: 6 (lower is better)
Translates to: WISWFLVTRCAF*AVHVAVSSLSP
Trigger: AGGGGACAAGCTGGAGACAGCCACGTGCACAGCCAAGAACGCACATCTGGTGACCAGAAACCAAGATATCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS TCA 72 bp TGTCAGCAGGGACCCGCTGGTTCTTTTCCACAAGGATaGGGTCTCCCACCTGGATGTTTGAACTCTTCACCT +
Preference number: 6 (lower is better)
Translates to: CQQGPAGSFPQG*GLPPGCLNSSP
Trigger: AGGTGAAGAGTTCAAACATCCAGGTGGGAGACCTCATCCTTGTGGAAAAGAACCAGCGGGTCCCTGCTGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS TCA 72 bp GAGCAGGTGGATCCTGGGATTGCTGGGTGTAAATGCTaGAGATGTGACTCTGCACTTCGTCCATGGAGTCCA +
Preference number: 6 (lower is better)
Translates to: EQVDPGIAGCKC*RCDSALRPWSP
Trigger: TGGACTCCATGGACGAAGTGCAGAGTCACATCTTCAGCATTTACACCCAGCAATCCCAGGATCCACCTGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 72 bp TACTTCTGGTTGTTGATGACATTTCGAGGGTACCGCTaGTCCCTCTTCTCGGGGTGTCCCAACCAGACAGTA +
Preference number: 6 (lower is better)
Translates to: YFWLLMTFRGYR*SLFSGCPNQTV
Trigger: TACTGTCTGGTTGGGACACCCCGAGAAGAGGGACCAGCGGTACCCTCGAAATGTCATCAACAACCAGAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000123156.8
ENSMUST00000156397.8
ENSMUST00000156555.2
ENSMUST00000178504.8
CDS CCA 72 bp CCGCGGTTGGTCACCAGTCGGAAAACATGGATATCTTaGTTTCTGGTCACCAGATGTGCGTTCTTGGCTGTG +
Preference number: 6 (lower is better)
Translates to: PRLVTSRKTWIS*FLVTRCAFLAV
Trigger: CACAGCCAAGAACGCACATCTGGTGACCAGAAACCAAGATATCCATGTTTTCCGACTGGTGACCAACCGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CAA 72 bp CCCGCGGTTGGTCACCAGTCGGAAAACATGGATATCTaGGTTTCTGGTCACCAGATGTGCGTTCTTGGCTGT +
Preference number: 6 (lower is better)
Translates to: PAVGHQSENMDI*VSGHQMCVLGC
Trigger: ACAGCCAAGAACGCACATCTGGTGACCAGAAACCAAGATATCCATGTTTTCCGACTGGTGACCAACCGCGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CCA 72 bp TGGTCACCAGTCGGAAAACATGGATATCTTGGTTTCTaGTCACCAGATGTGCGTTCTTGGCTGTGCACGTGG +
Preference number: 6 (lower is better)
Translates to: WSPVGKHGYLGF*SPDVRSWLCTW
Trigger: CCACGTGCACAGCCAAGAACGCACATCTGGTGACCAGAAACCAAGATATCCATGTTTTCCGACTGGTGACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CAA 90 bp CTGAACAACACCCCAGGAAGAAATGTGAAGAAATTGTACTTCTGGTaGTTGATGACATTTCGAGGGTACCGCTGGTCCCTCTTCTCGGGG +
Preference number: 6 (lower is better)
Translates to: LNNTPGRNVKKLYFW*LMTFRGYRWSLFSG
Trigger: CCCCGAGAAGAGGGACCAGCGGTACCCTCGAAATGTCATCAACAACCAGAAGTACAATTTCTTCACATTTCTTCCTGGGGTGTTGTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000123156.8
ENSMUST00000156397.8
ENSMUST00000156555.2
ENSMUST00000178504.8
CDS TCA 72 bp ACAGGCCAATCTTACTTCTGGGGTCGGAAGTATTCATaGCACTCCGCAGTTCTCTGCCAGTGTAGAGAACAA +
Preference number: 6 (lower is better)
Translates to: TGQSYFWGRKYS*HSAVLCQCREQ
Trigger: TTGTTCTCTACACTGGCAGAGAACTGCGGAGTGTCATGAATACTTCCGACCCCAGAAGTAAGATTGGCCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CAA 90 bp AACAACACCCCAGGAAGAAATGTGAAGAAATTGTACTTCTGGTTGTaGATGACATTTCGAGGGTACCGCTGGTCCCTCTTCTCGGGGTGT +
Preference number: 6 (lower is better)
Translates to: NNTPGRNVKKLYFWL*MTFRGYRWSLFSGC
Trigger: ACACCCCGAGAAGAGGGACCAGCGGTACCCTCGAAATGTCATCAACAACCAGAAGTACAATTTCTTCACATTTCTTCCTGGGGTGTTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000123156.8
ENSMUST00000156397.8
ENSMUST00000156555.2
ENSMUST00000178504.8
CDS CAA 90 bp GGGAAACATCGTGTAGATGGTAGAATACCCAATGATCAGGAAGCCTaGGTAGAGAGGAACGGATGCAAAGTAGAACACAGACGAGAAGAC +
Preference number: 6 (lower is better)
Translates to: GKHRVDGRIPNDQEA*VERNGCKVEHRRED
Trigger: GTCTTCTCGTCTGTGTTCTACTTTGCATCCGTTCCTCTCTACCAAGGCTTCCTGATCATTGGGTATTCTACCATCTACACGATGTTTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8
CDS CAA 72 bp CCAGGAAGAAATGTGAAGAAATTGTACTTCTGGTTGTaGATGACATTTCGAGGGTACCGCTGGTCCCTCTTC +
Preference number: 6 (lower is better)
Translates to: PGRNVKKLYFWL*MTFRGYRWSLF
Trigger: GAAGAGGGACCAGCGGTACCCTCGAAATGTCATCAACAACCAGAAGTACAATTTCTTCACATTTCTTCCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000123156.8
ENSMUST00000156397.8
ENSMUST00000156555.2
ENSMUST00000178504.8
CDS CAA 72 bp CGTGTAGATGGTAGAATACCCAATGATCAGGAAGCCTaGGTAGAGAGGAACGGATGCAAAGTAGAACACAGA +
Preference number: 6 (lower is better)
Translates to: RVDGRIPNDQEA*VERNGCKVEHR
Trigger: TCTGTGTTCTACTTTGCATCCGTTCCTCTCTACCAAGGCTTCCTGATCATTGGGTATTCTACCATCTACACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029060.11
ENSMUST00000109175.9
ENSMUST00000109176.8
ENSMUST00000109177.8
ENSMUST00000178504.8