RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATP8B3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000003341

Ensembl transcript IDs: ENSMUST00000020383.6, ENSMUST00000219648.2, ENSMUST00000220326.2

Found 284 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCTCGGATGCGGACGGCAGCAGCTTCCCCGACGTGGCACTTGTGGTaGTGGGTAGCTTCTGGGTCTCAGAGTCTCTGTGAATGGTGGGCT +
Preference number: 1 (lower is better)
Translates to: PRMRTAAASPTWHLW*WVASGSQSLCEWWA
Trigger: AGCCCACCATTCACAGAGACTCTGAGACCCAGAAGCTACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGTCCGCATCCGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CCA 90 bp CGGATGCGGACGGCAGCAGCTTCCCCGACGTGGCACTTGTGGTGGTaGGTAGCTTCTGGGTCTCAGAGTCTCTGTGAATGGTGGGCTGTT +
Preference number: 1 (lower is better)
Translates to: RMRTAAASPTWHLWW*VASGSQSLCEWWAV
Trigger: AACAGCCCACCATTCACAGAGACTCTGAGACCCAGAAGCTACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGTCCGCATCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CCA 90 bp CATCCTCGGATGCGGACGGCAGCAGCTTCCCCGACGTGGCACTTGTaGTGGTGGGTAGCTTCTGGGTCTCAGAGTCTCTGTGAATGGTGG +
Preference number: 1 (lower is better)
Translates to: HPRMRTAAASPTWHL*WWVASGSQSLCEWW
Trigger: CCACCATTCACAGAGACTCTGAGACCCAGAAGCTACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGTCCGCATCCGAGGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR GCA 90 bp GGGTTCAGGGATTCACAGACTGTGCCCCCATCGGAATCATCCACGTaGGTTTGCCTGCGCAGGATGGTGCCCTGGGTGATGAGGTTTGCG +
Preference number: 1 (lower is better)
Translates to: GFRDSQTVPPSESST*VCLRRMVPWVMRFA
Trigger: CGCAAACCTCATCACCCAGGGCACCATCCTGCGCAGGCAAACGCACGTGGATGATTCCGATGGGGGCACAGTCTGTGAATCCCTGAACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CCA 90 bp AGAAAGCCTCATCCTCGGATGCGGACGGCAGCAGCTTCCCCGACGTaGCACTTGTGGTGGTGGGTAGCTTCTGGGTCTCAGAGTCTCTGT +
Preference number: 1 (lower is better)
Translates to: RKPHPRMRTAAASPT*HLWWWVASGSQSLC
Trigger: ACAGAGACTCTGAGACCCAGAAGCTACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGTCCGCATCCGAGGATGAGGCTTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR TCA 90 bp GTGGCACTTGTGGTGGTGGGTAGCTTCTGGGTCTCAGAGTCTCTGTaGATGGTGGGCTGTTTCTCCATGGTCTGGGAGCTAGTGTTGGGG +
Preference number: 1 (lower is better)
Translates to: VALVVVGSFWVSESL*MVGCFSMVWELVLG
Trigger: CCCCAACACTAGCTCCCAGACCATGGAGAAACAGCCCACCATTCACAGAGACTCTGAGACCCAGAAGCTACCCACCACCACAAGTGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CCA 90 bp GAAGAGGCTGAATCCCTCCAGAGGGGGCTCTTCCAGAATGAGGAGTaGACATCCGTGTGTTTTGGCTGGCTTGCCAGAGTGTACTGTGAA +
Preference number: 1 (lower is better)
Translates to: EEAESLQRGLFQNEE*TSVCFGWLARVYCE
Trigger: TTCACAGTACACTCTGGCAAGCCAGCCAAAACACACGGATGTCCACTCCTCATTCTGGAAGAGCCCCCTCTGGAGGGATTCAGCCTCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR TCA 90 bp GGATTGTGCGCAAAGCCAGCATGGGCAGAACGTTCAGGGCCACATTaGGTACAATCAACAGCAGACTGCAAGGCTCGAAGAGCACGTTGT +
Preference number: 1 (lower is better)
Translates to: GLCAKPAWAERSGPH*VQSTADCKARRARC
Trigger: ACAACGTGCTCTTCGAGCCTTGCAGTCTGCTGTTGATTGTACTCAATGTGGCCCTGAACGTTCTGCCCATGCTGGCTTTGCGCACAATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR TCA 90 bp CTAGTGTTGGGGTGGACCTCTTCCTGGGACCCCTTTCCAAAGAAATaGCGTCTCTTCTTGGCCAGGATGGAGATCTTCCGCGGATTAAAT +
Preference number: 1 (lower is better)
Translates to: LVLGWTSSWDPFPKK*RLFLARMEIFRGLN
Trigger: ATTTAATCCGCGGAAGATCTCCATCCTGGCCAAGAAGAGACGTCATTTCTTTGGAAAGGGGTCCCAGGAAGAGGTCCACCCCAACACTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CCA 90 bp CTTTACCACAAGCATGACCTGCTCAAACAGGCCAATATACAGGACTaGAAGCGTGGAATACAGCAGGTTAAAGAGAGCCAGGAACCAGCC +
Preference number: 1 (lower is better)
Translates to: LYHKHDLLKQANIQD*KRGIQQVKESQEPA
Trigger: GGCTGGTTCCTGGCTCTCTTTAACCTGCTGTATTCCACGCTTCCAGTCCTGTATATTGGCCTGTTTGAGCAGGTCATGCTTGTGGTAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR TCA 90 bp ACGTCTCTTCTTGGCCAGGATGGAGATCTTCCGCGGATTAAATACTaGATCTTTGTTTTGCAAGGGAATGTCTTCTTCGGGTGGGTTCAG +
Preference number: 1 (lower is better)
Translates to: TSLLGQDGDLPRIKY*IFVLQGNVFFGWVQ
Trigger: CTGAACCCACCCGAAGAAGACATTCCCTTGCAAAACAAAGATTCAGTATTTAATCCGCGGAAGATCTCCATCCTGGCCAAGAAGAGACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR-3UTR CCA 90 bp GCCGGCTCCACGGCTACTTCTTCACTCGGGGCCTCCTCTTCCCCCTTAGGGCGCATTGTCCTGGATGACTaGGAATCTCCCAGCGATGGG +
Preference number: 2 (lower is better)
Translates to: AGSTATSSLGASSSPLGRIVLDD*ESPSDG
Trigger: CCCATCGCTGGGAGATTCCCAGTCATCCAGGACAAT...GCGCCCTAAGGGGGAAGAGGAGGCCCCGAGTGAAGAAGTAGCCGTGGAGCCGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CAA 90 bp CCTCATCCTCGGATGCGGACGGCAGCAGCTTCCCCGACGTGGCACTaGTGGTGGTGGGTAGCTTCTGGGTCTCAGAGTCTCTGTGAATGG +
Preference number: 2 (lower is better)
Translates to: PHPRMRTAAASPTWH*WWWVASGSQSLCEW
Trigger: CCATTCACAGAGACTCTGAGACCCAGAAGCTACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGTCCGCATCCGAGGATGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CAA 90 bp CAGGGATTCACAGACTGTGCCCCCATCGGAATCATCCACGTGCGTTaGCCTGCGCAGGATGGTGCCCTGGGTGATGAGGTTTGCGTAGCC +
Preference number: 2 (lower is better)
Translates to: QGFTDCAPIGIIHVR*PAQDGALGDEVCVA
Trigger: GGCTACGCAAACCTCATCACCCAGGGCACCATCCTGCGCAGGCAAACGCACGTGGATGATTCCGATGGGGGCACAGTCTGTGAATCCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CAA 90 bp CTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATaGTCCTGGATGACTGGGAATCTCCCAGCGATGGGCCTCTGGTCA +
Preference number: 2 (lower is better)
Translates to: LAPLQGSAHSPVTVA*SWMTGNLPAMGLWS
Trigger: TGACCAGAGGCCCATCGCTGGGAGATTCCCAGTCATCCAGGACAATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR-3UTR TCA 90 bp AAGATGCCTCATGGCCGGCTCCACGGCTACTTCTTCACTCGGGGCCTCCTCTTCGACACGCACTCCATGTaGGATGGTGCCTTGCTCCAC +
Preference number: 2 (lower is better)
Translates to: KMPHGRLHGYFFTRGLLFDTHSM*DGALLH
Trigger: GTGGAGCAAGGCACCATCTCACATGGAGTGCGTGTC...GAAGAGGAGGCCCCGAGTGAAGAAGTAGCCGTGGAGCCGGCCATGAGGCATCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR-3UTR GCA 90 bp GGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGATCCACTCCAGGGCTCTaGTCACTCCCCCGTGACTGT +
Preference number: 2 (lower is better)
Translates to: GYACCFKGRGSCALELHGSTPGL*SLPRDC
Trigger: ACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGA...TCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
3UTR-3UTR CCA 90 bp ACGGTGGGAGAAGGCATAGCTGGAACGGCGAGCTGGGATGCCACGGCGAAGATGGCACTCCATGTGAGATaGTGCCTTGCTCCACTCCAG +
Preference number: 2 (lower is better)
Translates to: TVGEGIAGTASWDATAKMALHVR*CLAPLQ
Trigger: CTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGC...CATCTTCGCCGTGGCATCCCAGCTCGCCGTTCCAGCTATGCCTTCTCCCACCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR-3UTR TCA 90 bp GGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGACACGCACTCCATGTaGGATGGTGCCTTGCTCCAC +
Preference number: 2 (lower is better)
Translates to: GYACCFKGRGSCALELHGDTHSM*DGALLH
Trigger: GTGGAGCAAGGCACCATCTCACATGGAGTGCGTGTC...TCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
3UTR-3UTR CCA 90 bp GCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTGGCACTCCATGTGAGATaGTGCCTTGCTCCACTCCAG +
Preference number: 2 (lower is better)
Translates to: ACCFKGRGSCALELHGALALHVR*CLAPLQ
Trigger: CTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGC...CAGAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
3UTR-3UTR GCA 90 bp ACTGGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATTGTGAGATGGTGCCTTaGTCCACTCCAGGGCTCTGC +
Preference number: 2 (lower is better)
Translates to: TGYACCFKGRGSCALELHCEMVP*STPGLC
Trigger: GCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACA...ATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
3UTR-3UTR CCA 90 bp GCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTGATTGTCCTGGATGACTaGGAATCTCCCAGCGATGGG +
Preference number: 2 (lower is better)
Translates to: ACCFKGRGSCALELHGALIVLDD*ESPSDG
Trigger: CCCATCGCTGGGAGATTCCCAGTCATCCAGGACAAT...CAGAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
3UTR-3UTR GCA 90 bp CATCCGTGTGTTTTGGCTGGCTTGCCAGAGTGTACTGTGAAGCCACACTGTAGATCATCCACGTGCGTTTaGCTGCGCAGGATGGTGCCC +
Preference number: 2 (lower is better)
Translates to: HPCVLAGLPECTVKPHCRSSTCV*LRRMVP
Trigger: GGGCACCATCCTGCGCAGGCAAACGCACGTGGATGA...TCTACAGTGTGGCTTCACAGTACACTCTGGCAAGCCAGCCAAAACACACGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR-3UTR CCA 90 bp GCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTGGCCAATATACAGGACTaGAAGCGTGGAATACAGCAG +
Preference number: 2 (lower is better)
Translates to: ACCFKGRGSCALELHGALANIQD*KRGIQQ
Trigger: CTGCTGTATTCCACGCTTCCAGTCCTGTATATTGGC...CAGAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR-3UTR CCA 90 bp ACTGGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATTGTTTCTCCATGGTCTaGGAGCTAGTGTTGGGGTGG +
Preference number: 2 (lower is better)
Translates to: TGYACCFKGRGSCALELHCFSMV*ELVLGW
Trigger: CCACCCCAACACTAGCTCCCAGACCATGGAGAAACA...ATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR-3UTR CCA 90 bp ACTGGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGACATCCGTGTGTTTTaGCTGGCTTGCCAGAGTGTA +
Preference number: 2 (lower is better)
Translates to: TGYACCFKGRGSCALELHDIRVF*LACQSV
Trigger: TACACTCTGGCAAGCCAGCCAAAACACACGGATGTC...ATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CAA 90 bp TGGATTGTGCGCAAAGCCAGCATGGGCAGAACGTTCAGGGCCACATaGAGTACAATCAACAGCAGACTGCAAGGCTCGAAGAGCACGTTG +
Preference number: 2 (lower is better)
Translates to: WIVRKASMGRTFRAT*STINSRLQGSKSTL
Trigger: CAACGTGCTCTTCGAGCCTTGCAGTCTGCTGTTGATTGTACTCAATGTGGCCCTGAACGTTCTGCCCATGCTGGCTTTGCGCACAATCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CCA 72 bp CTCACGGTGGGAGAAGGCATAGCTGGAACGGCGAGCTaGGATGCCACGGCGAAGATGCCTCATGGCCGGCTC +
Preference number: 3 (lower is better)
Translates to: LTVGEGIAGTAS*DATAKMPHGRL
Trigger: GAGCCGGCCATGAGGCATCTTCGCCGTGGCATCCCAGCTCGCCGTTCCAGCTATGCCTTCTCCCACCGTGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CCA 72 bp CATCCTCGGATGCGGACGGCAGCAGCTTCCCCGACGTaGCACTTGTGGTGGTGGGTAGCTTCTGGGTCTCAG +
Preference number: 3 (lower is better)
Translates to: HPRMRTAAASPT*HLWWWVASGSQ
Trigger: CTGAGACCCAGAAGCTACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGTCCGCATCCGAGGATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CCA 72 bp CGGACGGCAGCAGCTTCCCCGACGTGGCACTTGTGGTaGTGGGTAGCTTCTGGGTCTCAGAGTCTCTGTGAA +
Preference number: 3 (lower is better)
Translates to: RTAAASPTWHLW*WVASGSQSLCE
Trigger: TTCACAGAGACTCTGAGACCCAGAAGCTACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CCA 72 bp ATGCGGACGGCAGCAGCTTCCCCGACGTGGCACTTGTaGTGGTGGGTAGCTTCTGGGTCTCAGAGTCTCTGT +
Preference number: 3 (lower is better)
Translates to: MRTAAASPTWHL*WWVASGSQSLC
Trigger: ACAGAGACTCTGAGACCCAGAAGCTACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGTCCGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CCA 72 bp ACGGCAGCAGCTTCCCCGACGTGGCACTTGTGGTGGTaGGTAGCTTCTGGGTCTCAGAGTCTCTGTGAATGG +
Preference number: 3 (lower is better)
Translates to: TAAASPTWHLWW*VASGSQSLCEW
Trigger: CCATTCACAGAGACTCTGAGACCCAGAAGCTACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR TCA 72 bp GCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTaGCTTGAAAGGGCACTGACACGCACTCCATGTGAG +
Preference number: 3 (lower is better)
Translates to: AGAAVHLSCMEL*LERALTRTPCE
Trigger: CTCACATGGAGTGCGTGTCAGTGCCCTTTCAAGTCAGAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
3UTR GCA 72 bp CCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTaGTCACTCCCCCGTGACTGTTGCATTGTCCTGGAT +
Preference number: 3 (lower is better)
Translates to: PCEMVPCSTPGL*SLPRDCCIVLD
Trigger: ATCCAGGACAATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
3UTR-3UTR CAA 90 bp GGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGACCCGTGACTGTTGCATaGTCCTGGATGACTGGGAAT +
Preference number: 3 (lower is better)
Translates to: GYACCFKGRGSCALELHGPVTVA*SWMTGN
Trigger: ATTCCCAGTCATCCAGGACAATGCAACAGTCACGGG...TCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
3UTR-3UTR CAA 90 bp ATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCCCCGTGACTGTTGCATaGTCCTGGATGACTGGGAAT +
Preference number: 3 (lower is better)
Translates to: MPAALRAGAAVHLSCMELPVTVA*SWMTGN
Trigger: ATTCCCAGTCATCCAGGACAATGCAACAGTCACGGG...GAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
3UTR TCA 72 bp GTGGTGGTGGGTAGCTTCTGGGTCTCAGAGTCTCTGTaGATGGTGGGCTGTTTCTCCATGGTCTGGGAGCTA +
Preference number: 3 (lower is better)
Translates to: VVVGSFWVSESL*MVGCFSMVWEL
Trigger: TAGCTCCCAGACCATGGAGAAACAGCCCACCATTCACAGAGACTCTGAGACCCAGAAGCTACCCACCACCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR GCA 72 bp GTCTTTGGATGCTGTTTGCTGACTGGCTATGCCTGCTaGTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTG +
Preference number: 3 (lower is better)
Translates to: VFGCCLLTGYAC*FKGRGSCALEL
Trigger: CAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCCAGTCAGCAAACAGCATCCAAAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
3UTR GCA 72 bp CTTGTCTTTGGATGCTGTTTGCTGACTGGCTATGCCTaGTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAG +
Preference number: 3 (lower is better)
Translates to: LVFGCCLLTGYA*CFKGRGSCALE
Trigger: CTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCCAGTCAGCAAACAGCATCCAAAGACAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
3UTR TCA 72 bp GCAAAGCCAGCATGGGCAGAACGTTCAGGGCCACATTaGGTACAATCAACAGCAGACTGCAAGGCTCGAAGA +
Preference number: 3 (lower is better)
Translates to: AKPAWAERSGPH*VQSTADCKARR
Trigger: TCTTCGAGCCTTGCAGTCTGCTGTTGATTGTACTCAATGTGGCCCTGAACGTTCTGCCCATGCTGGCTTTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR TCA 72 bp ATCCGTGTGTTTTGGCTGGCTTGCCAGAGTGTACTGTaGAGCCACACTGTAGAAAGCCTCATCCTCGGATGC +
Preference number: 3 (lower is better)
Translates to: IRVFWLACQSVL*SHTVESLILGC
Trigger: GCATCCGAGGATGAGGCTTTCTACAGTGTGGCTTCACAGTACACTCTGGCAAGCCAGCCAAAACACACGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CCA 72 bp AAGCATGACCTGCTCAAACAGGCCAATATACAGGACTaGAAGCGTGGAATACAGCAGGTTAAAGAGAGCCAG +
Preference number: 3 (lower is better)
Translates to: KHDLLKQANIQD*KRGIQQVKESQ
Trigger: CTGGCTCTCTTTAACCTGCTGTATTCCACGCTTCCAGTCCTGTATATTGGCCTGTTTGAGCAGGTCATGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR TCA 72 bp CTTGGCCAGGATGGAGATCTTCCGCGGATTAAATACTaGATCTTTGTTTTGCAAGGGAATGTCTTCTTCGGG +
Preference number: 3 (lower is better)
Translates to: LGQDGDLPRIKY*IFVLQGNVFFG
Trigger: CCCGAAGAAGACATTCCCTTGCAAAACAAAGATTCAGTATTTAATCCGCGGAAGATCTCCATCCTGGCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR GCA 72 bp GAGATCTTCCGCGGATTAAATACTGAATCTTTGTTTTaGAAGGGAATGTCTTCTTCGGGTGGGTTCAGGGAT +
Preference number: 3 (lower is better)
Translates to: EIFRGLNTESLF*KGMSSSGGFRD
Trigger: ATCCCTGAACCCACCCGAAGAAGACATTCCCTTGCAAAACAAAGATTCAGTATTTAATCCGCGGAAGATCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp TCCTCGGATGCGGACGGCAGCAGCTTCCCCGACGTGGCACTTGTGGTGGTGGGTGGCCCAGCTGGTCGTTaGGACTGGTGCTGCGGGCCT +
Preference number: 4 (lower is better)
Translates to: SSDADGSSFPDVALVVVGGPAGR*DWCCGP
Trigger: AGGCCCGCAGCACCAGTCTCAACGACCAGCTGGGCC...ACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGTCCGCATCCGAGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp ACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGGCCCAGCTGGTCGTTaGGACTGGTGCTGCGGGCCT +
Preference number: 4 (lower is better)
Translates to: TPCEMVPCSTPGLCSLPRGPAGR*DWCCGP
Trigger: AGGCCCGCAGCACCAGTCTCAACGACCAGCTGGGCC...ACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp GCACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGGGCTCGGGGCTCCTTaGGCAAGGACAGGAGGAGCT +
Preference number: 4 (lower is better)
Translates to: ALHVRWCLAPLQGSAHSPGLGAP*ARTGGA
Trigger: AGCTCCTCCTGTCCTTGCGCAAGGAGCCCCGAGCCC...GGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CCA 90 bp ACGGTGGGAGAAGGCATAGCTGGAACGGCGAGCTGGGATGCCACGGCGAAGATGAGGAGGGCGGCCTCCTaGTGCTCCGGCTCCCATTCT +
Preference number: 4 (lower is better)
Translates to: TVGEGIAGTASWDATAKMRRAAS*CSGSHS
Trigger: AGAATGGGAGCCGGAGCACCAGGAGGCCGCCCTCCT...CATCTTCGCCGTGGCATCCCAGCTCGCCGTTCCAGCTATGCCTTCTCCCACCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp CCTCATGGCCGGCTCCACGGCTACTTCTTCACTCGGGGCCTCCTCTTCCCCCTTGCCTGCATGCCCTCCTaGCCTGCCAGTCCTACACCA +
Preference number: 4 (lower is better)
Translates to: PHGRLHGYFFTRGLLFPLACMPS*PASPTP
Trigger: TGGTGTAGGACTGGCAGGCCAGGAGGGCATGCAGGC...AAGGGGGAAGAGGAGGCCCCGAGTGAAGAAGTAGCCGTGGAGCCGGCCATGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
3UTR CAA 72 bp CGGATGCGGACGGCAGCAGCTTCCCCGACGTGGCACTaGTGGTGGTGGGTAGCTTCTGGGTCTCAGAGTCTC +
Preference number: 4 (lower is better)
Translates to: RMRTAAASPTWH*WWWVASGSQSL
Trigger: GAGACTCTGAGACCCAGAAGCTACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGTCCGCATCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp GAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCCGGTGGTGGCCTCCATaGCACCCTTACTGCGGAGAC +
Preference number: 4 (lower is better)
Translates to: EMVPCSTPGLCSLPRDCCRWWPP*HPYCGD
Trigger: GTCTCCGCAGTAAGGGTGTCATGGAGGCCACCACCG...GCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp CATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTCCACGTGCGTTTGCCTaGGCAGGATGGTGCCCTGGG +
Preference number: 4 (lower is better)
Translates to: HVRWCLAPLQGSAHSPVTPRAFA*AGWCPG
Trigger: CCCAGGGCACCATCCTGCGCAGGCAAACGCACGTGG...AGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR GCA 90 bp CCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACAGCCTCATCCTCGGATaGGGACGGCAGCAGCTTCCC +
Preference number: 4 (lower is better)
Translates to: PCEMVPCSTPGLCSLPRDSLILG*GRQQLP
Trigger: GGGAAGCTGCTGCCGTCCGCATCCGAGGATGAGGCT...GTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CCA 90 bp GCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTGAGGAGGGCGGCCTCCTaGTGCTCCGGCTCCCATTCT +
Preference number: 4 (lower is better)
Translates to: ACCFKGRGSCALELHGALRRAAS*CSGSHS
Trigger: AGAATGGGAGCCGGAGCACCAGGAGGCCGCCCTCCT...CAGAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp CCTCATGGCCGGCTCCACGGCTACTTCTTCACTCGGGGCCTCCTCTTCCCCCTTGTTCACTGCGGTCTCTaGCTTGTCCCCGGTCAGCAC +
Preference number: 4 (lower is better)
Translates to: PHGRLHGYFFTRGLLFPLVHCGL*LVPGQH
Trigger: GTGCTGACCGGGGACAAGCCAGAGACCGCAGTGAAC...AAGGGGGAAGAGGAGGCCCCGAGTGAAGAAGTAGCCGTGGAGCCGGCCATGAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp CCTCATGGCCGGCTCCACGGCTACTTCTTCACTCGGGGCCTCCTCTTCCCCCTTGAGGTGCAAAGAGCGTaGACCAGGGCAGTGTGGAGA +
Preference number: 4 (lower is better)
Translates to: PHGRLHGYFFTRGLLFPLEVQRA*TRAVWR
Trigger: TCTCCACACTGCCCTGGTTCACGCTCTTTGCACCTC...AAGGGGGAAGAGGAGGCCCCGAGTGAAGAAGTAGCCGTGGAGCCGGCCATGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp CGGACGGCAGCAGCTTCCCCGACGTGGCACTTGTGGTGGTGGGTAGCTTCTGGGGGAAGCCCCAGAAGATaGAGAAGGACTCCATCGCGT +
Preference number: 4 (lower is better)
Translates to: RTAAASPTWHLWWWVASGGSPRR*RRTPSR
Trigger: ACGCGATGGAGTCCTTCTTCATCTTCTGGGGCTTCC...CCCAGAAGCTACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGTCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp GCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTGCGGTGGTGGCCTCCATaGCACCCTTACTGCGGAGAC +
Preference number: 4 (lower is better)
Translates to: ACCFKGRGSCALELHGALRWWPP*HPYCGD
Trigger: GTCTCCGCAGTAAGGGTGTCATGGAGGCCACCACCG...CAGAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp GCACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCAGGGTGCGCAGGGTCTaGTCTGCAAAGGCAGCCAAG +
Preference number: 4 (lower is better)
Translates to: ALHVRWCLAPLQGSAHSPRVRRV*SAKAAK
Trigger: CTTGGCTGCCTTTGCAGAGCAGACCCTGCGCACCCT...GGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp CATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTACCTGGTGCAGGGCCTaGGCACGGTTCTGTAGCAGG +
Preference number: 4 (lower is better)
Translates to: HVRWCLAPLQGSAHSPVTTWCRA*ARFCSR
Trigger: CCTGCTACAGAACCGTGCGCAGGCCCTGCACCAGGT...AGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp GGAGAAGGCATAGCTGGAACGGCGAGCTGGGATGCCACGGCGAAGATGCCTCATACCTGGTGCAGGGCCTaGGCACGGTTCTGTAGCAGG +
Preference number: 4 (lower is better)
Translates to: GEGIAGTASWDATAKMPHTWCRA*ARFCSR
Trigger: CCTGCTACAGAACCGTGCGCAGGCCCTGCACCAGGT...ATGAGGCATCTTCGCCGTGGCATCCCAGCTCGCCGTTCCAGCTATGCCTTCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp GCACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCTCTGAACTGCCTGCATaGCCTCCTGGCCTGCCAGTC +
Preference number: 4 (lower is better)
Translates to: ALHVRWCLAPLQGSAHSPSELPA*PPGLPV
Trigger: GACTGGCAGGCCAGGAGGGCATGCAGGCAGTTCAGA...GGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp CCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACGTCGCTGTTCTGAACTaGCTGCATGCCCTCCTGGCC +
Preference number: 4 (lower is better)
Translates to: PCEMVPCSTPGLCSLPRDVAVLN*LHALLA
Trigger: GGCCAGGAGGGCATGCAGGCAGTTCAGAACAGCGAC...GTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTTGGTGCTGCGGGCCTTaGCTGGCATGTCCAGTGGCT +
Preference number: 4 (lower is better)
Translates to: TPCEMVPCSTPGLCSLPRWCCGP*LACPVA
Trigger: AGCCACTGGACATGCCAGCCAAGGCCCGCAGCACCA...ACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp GAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCGTTCACTGCGGTCTCTaGCTTGTCCCCGGTCAGCAC +
Preference number: 4 (lower is better)
Translates to: EMVPCSTPGLCSLPRDCCVHCGL*LVPGQH
Trigger: GTGCTGACCGGGGACAAGCCAGAGACCGCAGTGAAC...GCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ACGGTGGGAGAAGGCATAGCTGGAACGGCGAGCTGGGATGCCACGGCGAAGATGTGGCTCCATCTCCGATaGCCAGCGTCACCACCTGCT +
Preference number: 4 (lower is better)
Translates to: TVGEGIAGTASWDATAKMWLHLR*PASPPA
Trigger: AGCAGGTGGTGACGCTGGCCATCGGAGATGGAGCCA...CATCTTCGCCGTGGCATCCCAGCTCGCCGTTCCAGCTATGCCTTCTCCCACCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp ACGGTGGGAGAAGGCATAGCTGGAACGGCGAGCTGGGATGCCACGGCGAAGATGCCGTCAGAGCCTGCCTaGACTTCAAGTTGGTCTCCC +
Preference number: 4 (lower is better)
Translates to: TVGEGIAGTASWDATAKMPSEPA*TSSWSP
Trigger: GGGAGACCAACTTGAAGTTCAGGCAGGCTCTGACGG...CATCTTCGCCGTGGCATCCCAGCTCGCCGTTCCAGCTATGCCTTCTCCCACCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp GAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCTCACCCTGCAGCAGATaGCAGCCTGGCATTTGGAGG +
Preference number: 4 (lower is better)
Translates to: EMVPCSTPGLCSLPRDCCSPCSR*QPGIWR
Trigger: CCTCCAAATGCCAGGCTGTCATCTGCTGCAGGGTGA...GCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR GCA 90 bp ACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTAGGGTGCGCAGGGTCTaGTCTGCAAAGGCAGCCAAG +
Preference number: 4 (lower is better)
Translates to: TPCEMVPCSTPGLCSLPRRVRRV*SAKAAK
Trigger: CTTGGCTGCCTTTGCAGAGCAGACCCTGCGCACCCT...ACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp TCCTCGGATGCGGACGGCAGCAGCTTCCCCGACGTGGCACTTGTGGTGGTGGGTTTCCCCCTCAGGATCTaGCAAGGCCTGTTGTTGATG +
Preference number: 4 (lower is better)
Translates to: SSDADGSSFPDVALVVVGFPLRI*QGLLLM
Trigger: CATCAACAACAGGCCTTGCCAGATCCTGAGGGGGAA...ACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGTCCGCATCCGAGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTGCTGCGGGCCTTGGCTaGCATGTCCAGTGGCTCGTA +
Preference number: 4 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCIAAGLG*HVQWLV
Trigger: TACGAGCCACTGGACATGCCAGCCAAGGCCCGCAGC...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCGCCTGCATGCCCTCCTaGCCTGCCAGTCCTACACCA +
Preference number: 4 (lower is better)
Translates to: MPAALRAGAAVHLSCMELACMPS*PASPTP
Trigger: TGGTGTAGGACTGGCAGGCCAGGAGGGCATGCAGGC...GAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
3UTR CAA 72 bp CTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATaGTCCTGGATGACTGGGAATCTCCCAGCGATGGGC +
Preference number: 4 (lower is better)
Translates to: LQGSAHSPVTVA*SWMTGNLPAMG
Trigger: GCCCATCGCTGGGAGATTCCCAGTCATCCAGGACAATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp ACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGAGGTGCAAAGAGCGTaGACCAGGGCAGTGTGGAGA +
Preference number: 4 (lower is better)
Translates to: TPCEMVPCSTPGLCSLPREVQRA*TRAVWR
Trigger: TCTCCACACTGCCCTGGTTCACGCTCTTTGCACCTC...ACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp CCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTGTCCTGCCGTCAGAGCCTGCCTaGACTTCAAGTTGGTCTCCC +
Preference number: 4 (lower is better)
Translates to: PCSTPGLCSLPRDCCIVLPSEPA*TSSWSP
Trigger: GGGAGACCAACTTGAAGTTCAGGCAGGCTCTGACGG...CAGGACAATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp CCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTGTCCTGGGGGCTCTTCCAGAATaGGGAGTGGACATCCGTGTG +
Preference number: 4 (lower is better)
Translates to: PCSTPGLCSLPRDCCIVLGALPE*GVDIRV
Trigger: CACACGGATGTCCACTCCTCATTCTGGAAGAGCCCC...CAGGACAATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR GCA 90 bp CCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTGTCCTGCAGGCAGACCAGAGGTaGAAAGAGCGTGAACCAGGG +
Preference number: 4 (lower is better)
Translates to: PCSTPGLCSLPRDCCIVLQADQR*KEREPG
Trigger: CCCTGGTTCACGCTCTTTGCACCTCTGGTCTGCCTG...CAGGACAATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp ATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCGGCTACTGGGCTCTGTaGTGGCCAGCAGGAGCAAGT +
Preference number: 4 (lower is better)
Translates to: MPAALRAGAAVHLSCMELGYWAL*WPAGAS
Trigger: ACTTGCTCCTGCTGGCCAGCACAGAGCCCAGTAGCC...GAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp CCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTGTCCTGGCGCAGGGTCTGCTCTaGAAAGGCAGCCAAGACTTC +
Preference number: 4 (lower is better)
Translates to: PCSTPGLCSLPRDCCIVLAQGLL*KGSQDF
Trigger: GAAGTCTTGGCTGCCTTTGCAGAGCAGACCCTGCGC...CAGGACAATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp AAGATGCCTCATGGCCGGCTCCACGGCTACTTCTTCACTCGGGGCCTCCTCTTCGCGCAGGGTCTGCTCTaGAAAGGCAGCCAAGACTTC +
Preference number: 4 (lower is better)
Translates to: KMPHGRLHGYFFTRGLLFAQGLL*KGSQDF
Trigger: GAAGTCTTGGCTGCCTTTGCAGAGCAGACCCTGCGC...GAAGAGGAGGCCCCGAGTGAAGAAGTAGCCGTGGAGCCGGCCATGAGGCATCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTTCTGAACTGCCTGCATaGCCTCCTGGCCTGCCAGTC +
Preference number: 4 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCISELPA*PPGLPV
Trigger: GACTGGCAGGCCAGGAGGGCATGCAGGCAGTTCAGA...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ACTGGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATTGGTGCTGCGGGCCTTaGCTGGCATGTCCAGTGGCT +
Preference number: 4 (lower is better)
Translates to: TGYACCFKGRGSCALELHWCCGP*LACPVA
Trigger: AGCCACTGGACATGCCAGCCAAGGCCCGCAGCACCA...ATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp CCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTGTCCTGTCAGGGGAGGCAGCCTaGTACAGCAGCTGGTTGTCT +
Preference number: 4 (lower is better)
Translates to: PCSTPGLCSLPRDCCIVLSGEAA*YSSWLS
Trigger: AGACAACCAGCTGCTGTACCAGGCTGCCTCCCCTGA...CAGGACAATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp CCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTTCTCCGACAGCAGCTaGCACGCAAAGCCGATGTTC +
Preference number: 4 (lower is better)
Translates to: PCEMVPCSTPGLCSLPRDFSDSS*HAKPMF
Trigger: GAACATCGGCTTTGCGTGCCAGCTGCTGTCGGAGAA...GTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp GAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCGCGTTTCTCCACATCTaGGAGATCCTCCGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: EMVPCSTPGLCSLPRDCCAFLHI*EILRFW
Trigger: CCAGAAGCGGAGGATCTCCCAGATGTGGAGAAACGC...GCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CCA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTTGGCTCCATCTCCGATaGCCAGCGTCACCACCTGCT +
Preference number: 4 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCIWLHLR*PASPPA
Trigger: AGCAGGTGGTGACGCTGGCCATCGGAGATGGAGCCA...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ACACGCACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCGACGTGGCACTTGTaGTGGTGGGTAGCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: TRTPCEMVPCSTPGLCSLPTWHL*WWVASG
Trigger: CCCAGAAGCTACCCACCACCACAAGTGCCACGTCGG...GAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGCGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
3UTR CAA 72 bp ACAGACTGTGCCCCCATCGGAATCATCCACGTGCGTTaGCCTGCGCAGGATGGTGCCCTGGGTGATGAGGTT +
Preference number: 4 (lower is better)
Translates to: TDCAPIGIIHVR*PAQDGALGDEV
Trigger: AACCTCATCACCCAGGGCACCATCCTGCGCAGGCAAACGCACGTGGATGATTCCGATGGGGGCACAGTCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp ACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTCAATGCTGTCTTTGCTaGGACACACCACGTCCCCCA +
Preference number: 4 (lower is better)
Translates to: TPCEMVPCSTPGLCSLPRQCCLC*DTPRPP
Trigger: TGGGGGACGTGGTGTGTCTCAGCAAAGACAGCATTG...ACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp ACACGCACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCTGGGTGATGAGGTTTaGGTAGCCCTCACGGTGGGA +
Preference number: 4 (lower is better)
Translates to: TRTPCEMVPCSTPGLCSLLGDEV*VALTVG
Trigger: TCCCACCGTGAGGGCTACGCAAACCTCATCACCCAG...GAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGCGTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR GCA 90 bp CCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACGGGATTCACAGACTGTaGCCCCATCGGAATCATCCA +
Preference number: 4 (lower is better)
Translates to: PCEMVPCSTPGLCSLPRDGIHRL*PHRNHP
Trigger: TGGATGATTCCGATGGGGGCACAGTCTGTGAATCCC...GTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR GCA 90 bp GCACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCACCACAAGGGCCTTTTaGTTGGGGGTCACCCAAGAA +
Preference number: 4 (lower is better)
Translates to: ALHVRWCLAPLQGSAHSPTTRAF*LGVTQE
Trigger: TTCTTGGGTGACCCCCAAGCAAAAGGCCCTTGTGGT...GGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp CCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACAAGATGTACTGCACCTaGCCCAGCTGGTCGTTGAGA +
Preference number: 4 (lower is better)
Translates to: PCEMVPCSTPGLCSLPRDKMYCT*PSWSLR
Trigger: TCTCAACGACCAGCTGGGCCAGGTGCAGTACATCTT...GTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ACGGTGGGAGAAGGCATAGCTGGAACGGCGAGCTGGGATGCCACGGCGAAGATGAAGATGTACTGCACCTaGCCCAGCTGGTCGTTGAGA +
Preference number: 4 (lower is better)
Translates to: TVGEGIAGTASWDATAKMKMYCT*PSWSLR
Trigger: TCTCAACGACCAGCTGGGCCAGGTGCAGTACATCTT...CATCTTCGCCGTGGCATCCCAGCTCGCCGTTCCAGCTATGCCTTCTCCCACCGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTTCACGGTGTGGCAGATaGCCAGCAGACGCCAAAACT +
Preference number: 4 (lower is better)
Translates to: TPCEMVPCSTPGLCSLPRSRCGR*PADAKT
Trigger: AGTTTTGGCGTCTGCTGGCCATCTGCCACACCGTGA...ACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTGTACCATCACGGTGTaGCAGATGGCCAGCAGACGC +
Preference number: 4 (lower is better)
Translates to: MPAALRAGAAVHLSCMELCTITV*QMASRR
Trigger: GCGTCTGCTGGCCATCTGCCACACCGTGATGGTACA...GAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTTGGCACTTGTGGTGGTaGGTAGCTTCTGGGTCTCAG +
Preference number: 4 (lower is better)
Translates to: TPCEMVPCSTPGLCSLPRWHLWW*VASGSQ
Trigger: CTGAGACCCAGAAGCTACCCACCACCACAAGTGCCA...ACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR TCA 90 bp GAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCCCTTCACCTCCCAGGTaGACTCTGTGTCTTTATCCT +
Preference number: 4 (lower is better)
Translates to: EMVPCSTPGLCSLPRDCCPSPPR*TLCLYP
Trigger: AGGATAAAGACACAGAGTTCACCTGGGAGGTGAAGG...GCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp GGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGGAAGCCCCAGAAGATaGAGAAGGACTCCATCGCGT +
Preference number: 4 (lower is better)
Translates to: GYACCFKGRGSCALELHGGSPRR*RRTPSR
Trigger: ACGCGATGGAGTCCTTCTTCATCTTCTGGGGCTTCC...TCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp ACACGCACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCAAAGCCGATGTTCACTaGGGTCTCTGGCTTGTCCCC +
Preference number: 4 (lower is better)
Translates to: TRTPCEMVPCSTPGLCSLKADVH*GLWLVP
Trigger: GGGGACAAGCCAGAGACCGCAGTGAACATCGGCTTT...GAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGCGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp CCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTGTCCTGTTCCCCCTCAGGATCTaGCAAGGCCTGTTGTTGATG +
Preference number: 4 (lower is better)
Translates to: PCSTPGLCSLPRDCCIVLFPLRI*QGLLLM
Trigger: CATCAACAACAGGCCTTGCCAGATCCTGAGGGGGAA...CAGGACAATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp TGGTGGTGGGTAGCTTCTGGGTCTCAGAGTCTCTGTGAATGGTGGGCTGTTTCTGCTGCGGGCCTTGGCTaGCATGTCCAGTGGCTCGTA +
Preference number: 4 (lower is better)
Translates to: WWWVASGSQSLCEWWAVSAAGLG*HVQWLV
Trigger: TACGAGCCACTGGACATGCCAGCCAAGGCCCGCAGC...AGAAACAGCCCACCATTCACAGAGACTCTGAGACCCAGAAGCTACCCACCACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ACACGCACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCTCACGGTGTGGCAGATaGCCAGCAGACGCCAAAACT +
Preference number: 4 (lower is better)
Translates to: TRTPCEMVPCSTPGLCSLSRCGR*PADAKT
Trigger: AGTTTTGGCGTCTGCTGGCCATCTGCCACACCGTGA...GAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGCGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp CCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTGTCCTGGGGTGGACCTCTTCCTaGGACCCCTTTCCAAAGAAA +
Preference number: 4 (lower is better)
Translates to: PCSTPGLCSLPRDCCIVLGWTSS*DPFPKK
Trigger: TTTCTTTGGAAAGGGGTCCCAGGAAGAGGTCCACCC...CAGGACAATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CCA 90 bp CCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACCAGAGTCTCTGTGAATaGTGGGCTGTTTCTCCATGG +
Preference number: 4 (lower is better)
Translates to: PCEMVPCSTPGLCSLPRDQSLCE*WAVSPW
Trigger: CCATGGAGAAACAGCCCACCATTCACAGAGACTCTG...GTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CCA 90 bp GAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCGACATCCGTGTGTTTTaGCTGGCTTGCCAGAGTGTA +
Preference number: 4 (lower is better)
Translates to: EMVPCSTPGLCSLPRDCCDIRVF*LACQSV
Trigger: TACACTCTGGCAAGCCAGCCAAAACACACGGATGTC...GCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR TCA 90 bp GAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCCAATGTCCGCAGTCTTaGTCATGTTCACATCGTTGG +
Preference number: 4 (lower is better)
Translates to: EMVPCSTPGLCSLPRDCCQCPQS*SCSHRW
Trigger: CCAACGATGTGAACATGATCAAGACTGCGGACATTG...GCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp CATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTCGTTCAGGGCCACATTaGGTACAATCAACAGCAGAC +
Preference number: 4 (lower is better)
Translates to: HVRWCLAPLQGSAHSPVTRSGPH*VQSTAD
Trigger: GTCTGCTGTTGATTGTACTCAATGTGGCCCTGAACG...AGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR GCA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTGTGACCGTCAGAGCCTaGCTGAACTTCAAGTTGGTC +
Preference number: 4 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCIVTVRA*LNFKLV
Trigger: GACCAACTTGAAGTTCAGGCAGGCTCTGACGGTCAC...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp ACACGCACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCAAAGGGTACTTCCTaGTGTTCCACTCCAGACTCC +
Preference number: 4 (lower is better)
Translates to: TRTPCEMVPCSTPGLCSLPKGTS*CSTPDS
Trigger: GGAGTCTGGAGTGGAACAGCAGGAAGTACCCTTTGG...GAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGCGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp GGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGATTATTATACACCTGGTaGAGGGCCTGCGCACGGTTC +
Preference number: 4 (lower is better)
Translates to: GYACCFKGRGSCALELHGLLYTW*RACARF
Trigger: GAACCGTGCGCAGGCCCTGCACCAGGTGTATAATAA...TCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp ACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGCCAGCGTCACCACCTaGTGGTATTTCTTCACCAAT +
Preference number: 4 (lower is better)
Translates to: TPCEMVPCSTPGLCSLPRASVTT*WYFFTN
Trigger: ATTGGTGAAGAAATACCAGCAGGTGGTGACGCTGGC...ACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp GAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCTCTGCGGTCACATCCTaGTCAAACAGGCCAATATAC +
Preference number: 4 (lower is better)
Translates to: EMVPCSTPGLCSLPRDCCSAVTS*SNRPIY
Trigger: GTATATTGGCCTGTTTGAGCAGGATGTGACCGCAGA...GCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CCA 90 bp GCACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCCAAGTCACTGTACCCTaGAAGGAAGCCATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: ALHVRWCLAPLQGSAHSPQVTVP*KEAIFF
Trigger: GAAGAAGATGGCTTCCTTCCAGGGTACAGTGACTTG...GGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp GGCTCTTCCAGAATGAGGAGTGGACATCCGTGTGTTTTGGCTGGCTTGCCAGAGTCAGGGGAGGCAGCCTaGTACAGCAGCTGGTTGTCT +
Preference number: 4 (lower is better)
Translates to: GSSRMRSGHPCVLAGLPESGEAA*YSSWLS
Trigger: AGACAACCAGCTGCTGTACCAGGCTGCCTCCCCTGA...CTCTGGCAAGCCAGCCAAAACACACGGATGTCCACTCCTCATTCTGGAAGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp GCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTGTCATGTTCACATCGTTaGCTCCATCTCCGATGGCCA +
Preference number: 4 (lower is better)
Translates to: ACCFKGRGSCALELHGALSCSHR*LHLRWP
Trigger: TGGCCATCGGAGATGGAGCCAACGATGTGAACATGA...CAGAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp GGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGATGTTTCTCCATGGTCTaGGAGCTAGTGTTGGGGTGG +
Preference number: 4 (lower is better)
Translates to: GYACCFKGRGSCALELHGCFSMV*ELVLGW
Trigger: CCACCCCAACACTAGCTCCCAGACCATGGAGAAACA...TCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
3UTR CAA 72 bp ACTGGGAATCTCCCAGCGATGGGCCTCTGGTCAACTTaGCTTTCTGGGGACTTCCAGCTGGCTCGGACTAGA +
Preference number: 4 (lower is better)
Translates to: TGNLPAMGLWST*LSGDFQLARTR
Trigger: TCTAGTCCGAGCCAGCTGGAAGTCCCCAGAAAGCAAAGTTGACCAGAGGCCCATCGCTGGGAGATTCCCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp GGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGACCTTCACCTCCCAGGTaGACTCTGTGTCTTTATCCT +
Preference number: 4 (lower is better)
Translates to: GYACCFKGRGSCALELHGPSPPR*TLCLYP
Trigger: AGGATAAAGACACAGAGTTCACCTGGGAGGTGAAGG...TCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp ATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCGGTGGGTCATCATTTTaGACGCCTTCTGGTGTACGT +
Preference number: 4 (lower is better)
Translates to: MPAALRAGAAVHLSCMELGGSSF*TPSGVR
Trigger: ACGTACACCAGAAGGCGTTCAAAATGATGACCCACC...GAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp GCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTGATCTCGGGGATGCCCTaGAGGATGATGATAAAAAGG +
Preference number: 4 (lower is better)
Translates to: ACCFKGRGSCALELHGALISGMP*RMMIKR
Trigger: CCTTTTTATCATCATCCTGCAGGGCATCCCCGAGAT...CAGAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp CCCTTAGGGCGCTGTTTCAAGACAGTTCTATGGATTGTGCGCAAAGCCAGCATGGTCGCTGTTCTGAACTaGCTGCATGCCCTCCTGGCC +
Preference number: 4 (lower is better)
Translates to: PLGRCFKTVLWIVRKASMVAVLN*LHALLA
Trigger: GGCCAGGAGGGCATGCAGGCAGTTCAGAACAGCGAC...CATGCTGGCTTTGCGCACAATCCATAGAACTGTCTTGAAACAGCGCCCTAAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp GGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAAGTAACGCAGGAACTTaGAGACTCGCATGTAGGACC +
Preference number: 4 (lower is better)
Translates to: GYACCFKGRGSCALELHGSNAGT*RLACRT
Trigger: GGTCCTACATGCGAGTCTGCAAGTTCCTGCGTTACT...TCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp ACACGCACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCAGTTCTATGGATTGTaGGCAAAGCCAGCATGGGCA +
Preference number: 4 (lower is better)
Translates to: TRTPCEMVPCSTPGLCSLQFYGL*AKPAWA
Trigger: TGCCCATGCTGGCTTTGCGCACAATCCATAGAACTG...GAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGCGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR GCA 90 bp CTTGTCTTTGGATGCTGTTTGCTGACTGGCTATGCCTGCTGCTTTAAGGGCAGGTCATCCACGTGCGTTTaGCTGCGCAGGATGGTGCCC +
Preference number: 4 (lower is better)
Translates to: LVFGCCLLTGYACCFKGRSSTCV*LRRMVP
Trigger: GGGCACCATCCTGCGCAGGCAAACGCACGTGGATGA...CCTGCCCTTAAAGCAGCAGGCATAGCCAGTCAGCAAACAGCATCCAAAGACAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CCA 90 bp GAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCACCAAGGCCATGTTGTaGTGGGTCATCATTTTGAAC +
Preference number: 4 (lower is better)
Translates to: EMVPCSTPGLCSLPRDCCTKAML*WVIILN
Trigger: GTTCAAAATGATGACCCACCACAACATGGCCTTGGT...GCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp CTTGTCTTTGGATGCTGTTTGCTGACTGGCTATGCCTGCTGCTTTAAGGGCAGGTTGGAGTCGGCTGAGTaGGACGTTCCCAGAGAGGGG +
Preference number: 4 (lower is better)
Translates to: LVFGCCLLTGYACCFKGRLESAE*DVPREG
Trigger: CCCCTCTCTGGGAACGTCCCACTCAGCCGACTCCAA...CCTGCCCTTAAAGCAGCAGGCATAGCCAGTCAGCAAACAGCATCCAAAGACAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CCA 90 bp ATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTCTGGGCCATCATGCTaGCCACTGTCTTGTAGAAGA +
Preference number: 4 (lower is better)
Translates to: MPAALRAGAAVHLSCMELSGPSC*PLSCRR
Trigger: TCTTCTACAAGACAGTGGCCAGCATGATGGCCCAGA...GAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp GAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCGTCAGCAAACAGAAATaGGAAGGTCTTTGGCGAGAT +
Preference number: 4 (lower is better)
Translates to: EMVPCSTPGLCSLPRDCCVSKQK*EGLWRD
Trigger: ATCTCGCCAAAGACCTTCCCATTTCTGTTTGCTGAC...GCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CCA 90 bp GCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTGAATGACGTCTCTTCTTaGCCAGGATGGAGATCTTCC +
Preference number: 4 (lower is better)
Translates to: ACCFKGRGSCALELHGALNDVSS*PGWRSS
Trigger: GGAAGATCTCCATCCTGGCCAAGAAGAGACGTCATT...CAGAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CCA 90 bp CCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTGTCCTGAGTCTCTGTGAATGGTaGGCTGTTTCTCCATGGTCT +
Preference number: 4 (lower is better)
Translates to: PCSTPGLCSLPRDCCIVLSLCEW*AVSPWS
Trigger: AGACCATGGAGAAACAGCCCACCATTCACAGAGACT...CAGGACAATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR TCA 90 bp GAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCTTGGTCCTCTTCAGATaGATCTTCCCACAATTCTTC +
Preference number: 4 (lower is better)
Translates to: EMVPCSTPGLCSLPRDCCLVLFR*IFPQFF
Trigger: GAAGAATTGTGGGAAGATTCATCTGAAGAGGACCAA...GCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp ACTGGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGTGGGTCATCATTTTaGACGCCTTCTGGTGTACGT +
Preference number: 4 (lower is better)
Translates to: TGYACCFKGRGSCALELHGGSSF*TPSGVR
Trigger: ACGTACACCAGAAGGCGTTCAAAATGATGACCCACC...ATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTAAGGACAGGAGGAGCTaGTCCAAGAATTCTCCATTG +
Preference number: 4 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCIKDRRS*SKNSPL
Trigger: CAATGGAGAATTCTTGGATCAGCTCCTCCTGTCCTT...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR TCA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTCAATGTCCGCAGTCTTaGTCATGTTCACATCGTTGG +
Preference number: 4 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCIQCPQS*SCSHRW
Trigger: CCAACGATGTGAACATGATCAAGACTGCGGACATTG...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp GAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCCCGCGGATTAAATACTaGATCTTTGTTTTGCAAGGG +
Preference number: 4 (lower is better)
Translates to: EMVPCSTPGLCSLPRDCCPRIKY*IFVLQG
Trigger: CCCTTGCAAAACAAAGATTCAGTATTTAATCCGCGG...GCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR GCA 90 bp CATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTATTTCTTCACCAATaGCACCACAAGGGCCTTTTG +
Preference number: 4 (lower is better)
Translates to: HVRWCLAPLQGSAHSPVTVFLHQ*HHKGLL
Trigger: CAAAAGGCCCTTGTGGTGGCATTGGTGAAGAAATAC...AGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTATATCTGGGCCATCATaGTGGCCACTGTCTTGTAGA +
Preference number: 4 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCIISGPS*WPLSCR
Trigger: TCTACAAGACAGTGGCCAGCATGATGGCCCAGATAT...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp AAGATGCCTCATGGCCGGCTCCACGGCTACTTCTTCACTCGGGGCCTCCTCTTCTTGTATTTGGCAGTGTaGATGGCGTTGCTCTTGTAC +
Preference number: 4 (lower is better)
Translates to: KMPHGRLHGYFFTRGLLFLYLAV*MALLLY
Trigger: GTACAAGAGCAACGCCATCCACACTGCCAAATACAA...GAAGAGGAGGCCCCGAGTGAAGAAGTAGCCGTGGAGCCGGCCATGAGGCATCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCCAAGTCACTGTACCCTaGAAGGAAGCCATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: MPAALRAGAAVHLSCMELQVTVP*KEAIFF
Trigger: GAAGAAGATGGCTTCCTTCCAGGGTACAGTGACTTG...GAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTTCATCAGGTCCAGCTTaGTCCTCTTCAGATGAATCT +
Preference number: 4 (lower is better)
Translates to: TPCEMVPCSTPGLCSLPRSSGPA*SSSDES
Trigger: AGATTCATCTGAAGAGGACCAAGCTGGACCTGATGA...ACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTGCCAATATACAGGACTaGAAGCGTGGAATACAGCAG +
Preference number: 4 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCIANIQD*KRGIQQ
Trigger: CTGCTGTATTCCACGCTTCCAGTCCTGTATATTGGC...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
3UTR CAA 72 bp CGCAAAGCCAGCATGGGCAGAACGTTCAGGGCCACATaGAGTACAATCAACAGCAGACTGCAAGGCTCGAAG +
Preference number: 4 (lower is better)
Translates to: RKASMGRTFRAT*STINSRLQGSK
Trigger: CTTCGAGCCTTGCAGTCTGCTGTTGATTGTACTCAATGTGGCCCTGAACGTTCTGCCCATGCTGGCTTTGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp AAGATGCCTCATGGCCGGCTCCACGGCTACTTCTTCACTCGGGGCCTCCTCTTCTTGGTCCTCTTCAGATaGATCTTCCCACAATTCTTC +
Preference number: 4 (lower is better)
Translates to: KMPHGRLHGYFFTRGLLFLVLFR*IFPQFF
Trigger: GAAGAATTGTGGGAAGATTCATCTGAAGAGGACCAA...GAAGAGGAGGCCCCGAGTGAAGAAGTAGCCGTGGAGCCGGCCATGAGGCATCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp CCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTACCTTTCCAGTACTTaGTTGATGTCCTTATCTTCC +
Preference number: 4 (lower is better)
Translates to: PCEMVPCSTPGLCSLPRDYLSST*LMSLSS
Trigger: GGAAGATAAGGACATCAATCAAGTACTGGAAAGGTA...GTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp GTGCGCAAAGCCAGCATGGGCAGAACGTTCAGGGCCACATTGAGTACAATCAACGTGACCGTCAGAGCCTaGCTGAACTTCAAGTTGGTC +
Preference number: 4 (lower is better)
Translates to: VRKASMGRTFRATLSTINVTVRA*LNFKLV
Trigger: GACCAACTTGAAGTTCAGGCAGGCTCTGACGGTCAC...GTTGATTGTACTCAATGTGGCCCTGAACGTTCTGCCCATGCTGGCTTTGCGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp GAATCCCTCCAGAGGGGGCTCTTCCAGAATGAGGAGTGGACATCCGTGTGTTTTCCAAAGGGTACTTCCTaGTGTTCCACTCCAGACTCC +
Preference number: 4 (lower is better)
Translates to: ESLQRGLFQNEEWTSVCFPKGTS*CSTPDS
Trigger: GGAGTCTGGAGTGGAACAGCAGGAAGTACCCTTTGG...AAAACACACGGATGTCCACTCCTCATTCTGGAAGAGCCCCCTCTGGAGGGATTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp GTGCGCAAAGCCAGCATGGGCAGAACGTTCAGGGCCACATTGAGTACAATCAACTTATTATACACCTGGTaGAGGGCCTGCGCACGGTTC +
Preference number: 4 (lower is better)
Translates to: VRKASMGRTFRATLSTINLLYTW*RACARF
Trigger: GAACCGTGCGCAGGCCCTGCACCAGGTGTATAATAA...GTTGATTGTACTCAATGTGGCCCTGAACGTTCTGCCCATGCTGGCTTTGCGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp CCCTTAGGGCGCTGTTTCAAGACAGTTCTATGGATTGTGCGCAAAGCCAGCATGAAAGCCGATGTTCACTaGGGTCTCTGGCTTGTCCCC +
Preference number: 4 (lower is better)
Translates to: PLGRCFKTVLWIVRKASMKADVH*GLWLVP
Trigger: GGGGACAAGCCAGAGACCGCAGTGAACATCGGCTTT...CATGCTGGCTTTGCGCACAATCCATAGAACTGTCTTGAAACAGCGCCCTAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp GGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGATTGTATTTGGCAGTGTaGATGGCGTTGCTCTTGTAC +
Preference number: 4 (lower is better)
Translates to: GYACCFKGRGSCALELHGLYLAV*MALLLY
Trigger: GTACAAGAGCAACGCCATCCACACTGCCAAATACAA...TCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTAGAAGATGTTGTATTTaGCAGTGTGGATGGCGTTGC +
Preference number: 4 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCIRRCCI*QCGWRC
Trigger: GCAACGCCATCCACACTGCCAAATACAACATCTTCT...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTTCATCAGGTCCAGCTTaGTCCTCTTCAGATGAATCT +
Preference number: 4 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCISSGPA*SSSDES
Trigger: AGATTCATCTGAAGAGGACCAAGCTGGACCTGATGA...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp CTTGTCTTTGGATGCTGTTTGCTGACTGGCTATGCCTGCTGCTTTAAGGGCAGGTGGTGTAGAGGCAGATaGAGCCCTCTGGGTTTCGGA +
Preference number: 4 (lower is better)
Translates to: LVFGCCLLTGYACCFKGRWCRGR*SPLGFG
Trigger: TCCGAAACCCAGAGGGCTCCATCTGCCTCTACACCA...CCTGCCCTTAAAGCAGCAGGCATAGCCAGTCAGCAAACAGCATCCAAAGACAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CCA 90 bp CATCCGTGTGTTTTGGCTGGCTTGCCAGAGTGTACTGTGAAGCCACACTGTAGATTCTCCGACAGCAGCTaGCACGCAAAGCCGATGTTC +
Preference number: 4 (lower is better)
Translates to: HPCVLAGLPECTVKPHCRFSDSS*HAKPMF
Trigger: GAACATCGGCTTTGCGTGCCAGCTGCTGTCGGAGAA...TCTACAGTGTGGCTTCACAGTACACTCTGGCAAGCCAGCCAAAACACACGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTACCAAGGCCATGTTGTaGTGGGTCATCATTTTGAAC +
Preference number: 4 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCITKAML*WVIILN
Trigger: GTTCAAAATGATGACCCACCACAACATGGCCTTGGT...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp GGCTCTTCCAGAATGAGGAGTGGACATCCGTGTGTTTTGGCTGGCTTGCCAGAGTCTGGGCCATCATGCTaGCCACTGTCTTGTAGAAGA +
Preference number: 4 (lower is better)
Translates to: GSSRMRSGHPCVLAGLPESGPSC*PLSCRR
Trigger: TCTTCTACAAGACAGTGGCCAGCATGATGGCCCAGA...CTCTGGCAAGCCAGCCAAAACACACGGATGTCCACTCCTCATTCTGGAAGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp ACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTTCCCACAATTCTTCATaGTCTTTGTGTCTAAACCAG +
Preference number: 4 (lower is better)
Translates to: TPCEMVPCSTPGLCSLPRSHNSS*SLCLNQ
Trigger: CTGGTTTAGACACAAAGATCATGAAGAATTGTGGGA...ACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp ACCTGCTCAAACAGGCCAATATACAGGACTGGAAGCGTGGAATACAGCAGGTTACAGGCAGACCAGAGGTaGAAAGAGCGTGAACCAGGG +
Preference number: 4 (lower is better)
Translates to: TCSNRPIYRTGSVEYSRLQADQR*KEREPG
Trigger: CCCTGGTTCACGCTCTTTGCACCTCTGGTCTGCCTG...TAACCTGCTGTATTCCACGCTTCCAGTCCTGTATATTGGCCTGTTTGAGCAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp CTTGTCTTTGGATGCTGTTTGCTGACTGGCTATGCCTGCTGCTTTAAGGGCAGGAACAGGTGTCTGTGTTaGGGATCTTGCAGCCACGCA +
Preference number: 4 (lower is better)
Translates to: LVFGCCLLTGYACCFKGRNRCLC*GSCSHA
Trigger: TGCGTGGCTGCAAGATCCGCAACACAGACACCTGTT...CCTGCCCTTAAAGCAGCAGGCATAGCCAGTCAGCAAACAGCATCCAAAGACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR GCA 90 bp CAGCATGGGCAGAACGTTCAGGGCCACATTGAGTACAATCAACAGCAGACTGCAAACAGGTGTCTGTGTTaGGGATCTTGCAGCCACGCA +
Preference number: 4 (lower is better)
Translates to: QHGQNVQGHIEYNQQQTANRCLC*GSCSHA
Trigger: TGCGTGGCTGCAAGATCCGCAACACAGACACCTGTT...TGCAGTCTGCTGTTGATTGTACTCAATGTGGCCCTGAACGTTCTGCCCATGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp ACTGGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGTATTTCTTCACCAATaGCACCACAAGGGCCTTTTG +
Preference number: 4 (lower is better)
Translates to: TGYACCFKGRGSCALELHVFLHQ*HHKGLL
Trigger: CAAAAGGCCCTTGTGGTGGCATTGGTGAAGAAATAC...ATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp ACACGCACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCTACCTTTCCAGTACTTaGTTGATGTCCTTATCTTCC +
Preference number: 4 (lower is better)
Translates to: TRTPCEMVPCSTPGLCSLYLSST*LMSLSS
Trigger: GGAAGATAAGGACATCAATCAAGTACTGGAAAGGTA...GAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGCGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp CTCTTCCCCCTTAGGGCGCTGTTTCAAGACAGTTCTATGGATTGTGCGCAAAGCGCCAGCGTCACCACCTaGTGGTATTTCTTCACCAAT +
Preference number: 4 (lower is better)
Translates to: LFPLRALFQDSSMDCAQSASVTT*WYFFTN
Trigger: ATTGGTGAAGAAATACCAGCAGGTGGTGACGCTGGC...GCTTTGCGCACAATCCATAGAACTGTCTTGAAACAGCGCCCTAAGGGGGAAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCAAAGGAAGTAGAGATTaGACATTCGATGGAACTGCT +
Preference number: 4 (lower is better)
Translates to: MPAALRAGAAVHLSCMELKGSRD*TFDGTA
Trigger: AGCAGTTCCATCGAATGTCCAATCTCTACTTCCTTT...GAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp ACCTGCTCAAACAGGCCAATATACAGGACTGGAAGCGTGGAATACAGCAGGTTATGGTGTAGAGGCAGATaGAGCCCTCTGGGTTTCGGA +
Preference number: 4 (lower is better)
Translates to: TCSNRPIYRTGSVEYSRLWCRGR*SPLGFG
Trigger: TCCGAAACCCAGAGGGCTCCATCTGCCTCTACACCA...TAACCTGCTGTATTCCACGCTTCCAGTCCTGTATATTGGCCTGTTTGAGCAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp CAGCATGGGCAGAACGTTCAGGGCCACATTGAGTACAATCAACAGCAGACTGCAATCTCGGGGATGCCCTaGAGGATGATGATAAAAAGG +
Preference number: 4 (lower is better)
Translates to: QHGQNVQGHIEYNQQQTAISGMP*RMMIKR
Trigger: CCTTTTTATCATCATCCTGCAGGGCATCCCCGAGAT...TGCAGTCTGCTGTTGATTGTACTCAATGTGGCCCTGAACGTTCTGCCCATGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp CATCCGTGTGTTTTGGCTGGCTTGCCAGAGTGTACTGTGAAGCCACACTGTAGAATATCTGGGCCATCATaGTGGCCACTGTCTTGTAGA +
Preference number: 4 (lower is better)
Translates to: HPCVLAGLPECTVKPHCRISGPS*WPLSCR
Trigger: TCTACAAGACAGTGGCCAGCATGATGGCCCAGATAT...TCTACAGTGTGGCTTCACAGTACACTCTGGCAAGCCAGCCAAAACACACGGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR GCA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTACTGAATCTTTGTTTTaGAAGGGAATGTCTTCTTCG +
Preference number: 4 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCITESLF*KGMSSS
Trigger: CGAAGAAGACATTCCCTTGCAAAACAAAGATTCAGT...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CCA 90 bp TACCACAAGCATGACCTGCTCAAACAGGCCAATATACAGGACTGGAAGCGTGGATCATGTTCACATCGTTaGCTCCATCTCCGATGGCCA +
Preference number: 4 (lower is better)
Translates to: YHKHDLLKQANIQDWKRGSCSHR*LHLRWP
Trigger: TGGCCATCGGAGATGGAGCCAACGATGTGAACATGA...TCCACGCTTCCAGTCCTGTATATTGGCCTGTTTGAGCAGGTCATGCTTGTGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CCA 90 bp CATCCGTGTGTTTTGGCTGGCTTGCCAGAGTGTACTGTGAAGCCACACTGTAGAAGAAGATGTTGTATTTaGCAGTGTGGATGGCGTTGC +
Preference number: 4 (lower is better)
Translates to: HPCVLAGLPECTVKPHCRRRCCI*QCGWRC
Trigger: GCAACGCCATCCACACTGCCAAATACAACATCTTCT...TCTACAGTGTGGCTTCACAGTACACTCTGGCAAGCCAGCCAAAACACACGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR TCA 90 bp CTCTTCCCCCTTAGGGCGCTGTTTCAAGACAGTTCTATGGATTGTGCGCAAAGCTCCCACAATTCTTCATaGTCTTTGTGTCTAAACCAG +
Preference number: 4 (lower is better)
Translates to: LFPLRALFQDSSMDCAQSSHNSS*SLCLNQ
Trigger: CTGGTTTAGACACAAAGATCATGAAGAATTGTGGGA...GCTTTGCGCACAATCCATAGAACTGTCTTGAAACAGCGCCCTAAGGGGGAAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp GAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCTGGCCCAGCTGGTCGTaGAGACTGGTGCTGCGGGCC +
Preference number: 5 (lower is better)
Translates to: EMVPCSTPGLCSLPRDCCWPSWS*RLVLRA
Trigger: GGCCCGCAGCACCAGTCTCAACGACCAGCTGGGCCA...GCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS TCA 90 bp CCTCTCCCGCTGCACCTCTGGGCTCTCCCGGATCTTGGAGTCGGCTaGGTGGGACGTTCCCAGAGAGGGGCCAGCGTTTCTCCACATCTG +
Preference number: 5 (lower is better)
Translates to: PLPLHLWALPDLGVG*VGRSQRGASVSPHL
Trigger: CAGATGTGGAGAAACGCTGGCCCCTCTCTGGGAACGTCCCACTCAGCCGACTCCAAGATCCGGGAGAGCCCAGAGGTGCAGCGGGAGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS CCA 90 bp TCCCGCTGCACCTCTGGGCTCTCCCGGATCTTGGAGTCGGCTGAGTaGGACGTTCCCAGAGAGGGGCCAGCGTTTCTCCACATCTGGGAG +
Preference number: 5 (lower is better)
Translates to: SRCTSGLSRILESAE*DVPREGPAFLHIWE
Trigger: CTCCCAGATGTGGAGAAACGCTGGCCCCTCTCTGGGAACGTCCCACTCAGCCGACTCCAAGATCCGGGAGAGCCCAGAGGTGCAGCGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CAA 90 bp ATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCAGGGCTCGGGGCTCCTaGCGCAAGGACAGGAGGAGC +
Preference number: 5 (lower is better)
Translates to: MPAALRAGAAVHLSCMELRARGS*RKDRRS
Trigger: GCTCCTCCTGTCCTTGCGCAAGGAGCCCCGAGCCCT...GAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS TCA 90 bp TGTACCATCACGGTGTGGCAGATGGCCAGCAGACGCCAAAACTCCTaGACCGCTCGGTCCTGCCGGCCTTGCACCAGGGATTCCAGCTCC +
Preference number: 5 (lower is better)
Translates to: CTITVWQMASRRQNS*TARSCRPCTRDSSS
Trigger: GGAGCTGGAATCCCTGGTGCAAGGCCGGCAGGACCGAGCGGTTCAGGAGTTTTGGCGTCTGCTGGCCATCTGCCACACCGTGATGGTACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS GCA 90 bp CTCCACATCCTTGTAGGCCAGGCACAGGGTGCGCAGGGTCTGCTCTaGAAAGGCAGCCAAGACTTCCTCGGTGGTGGCCTCCATGACACC +
Preference number: 5 (lower is better)
Translates to: LHILVGQAQGAQGLL*KGSQDFLGGGLHDT
Trigger: GGTGTCATGGAGGCCACCACCGAGGAAGTCTTGGCTGCCTTTGCAGAGCAGACCCTGCGCACCCTGTGCCTGGCCTACAAGGATGTGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp ACTGGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATCTGGTGCTGCGGGCCTaGGCTGGCATGTCCAGTGGC +
Preference number: 5 (lower is better)
Translates to: TGYACCFKGRGSCALELHLVLRA*AGMSSG
Trigger: GCCACTGGACATGCCAGCCAAGGCCCGCAGCACCAG...ATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS GCA 90 bp AGCTGCAGGTTCTGTTCCATCTTATTATACACCTGGTGCAGGGCCTaGGCACGGTTCTGTAGCAGGAGGGCGGCCTCCTGGTGCTCCGGC +
Preference number: 5 (lower is better)
Translates to: SCRFCSILLYTWCRA*ARFCSRRAASWCSG
Trigger: GCCGGAGCACCAGGAGGCCGCCCTCCTGCTACAGAACCGTGCGCAGGCCCTGCACCAGGTGTATAATAAGATGGAACAGAACCTGCAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS GCA 90 bp CTGCAGGTAGCAGAACTGGGCCAGCACGTAGTCGCTGTTCTGAACTaGCTGCATGCCCTCCTGGCCTGCCAGTCCTACACCAATGTCCGC +
Preference number: 5 (lower is better)
Translates to: LQVAELGQHVVAVLN*LHALLACQSYTNVR
Trigger: GCGGACATTGGTGTAGGACTGGCAGGCCAGGAGGGCATGCAGGCAGTTCAGAACAGCGACTACGTGCTGGCCCAGTTCTGCTACCTGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CCA 90 bp GTGGCTCCCAGCAGCTGCAGGTTCTGTTCCATCTTATTATACACCTaGTGCAGGGCCTGCGCACGGTTCTGTAGCAGGAGGGCGGCCTCC +
Preference number: 5 (lower is better)
Translates to: VAPSSCRFCSILLYT*CRACARFCSRRAAS
Trigger: GGAGGCCGCCCTCCTGCTACAGAACCGTGCGCAGGCCCTGCACCAGGTGTATAATAAGATGGAACAGAACCTGCAGCTGCTGGGAGCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp GTGCGCAAAGCCAGCATGGGCAGAACGTTCAGGGCCACATTGAGTACAATCAACCTGGTGCTGCGGGCCTaGGCTGGCATGTCCAGTGGC +
Preference number: 5 (lower is better)
Translates to: VRKASMGRTFRATLSTINLVLRA*AGMSSG
Trigger: GCCACTGGACATGCCAGCCAAGGCCCGCAGCACCAG...GTTGATTGTACTCAATGTGGCCCTGAACGTTCTGCCCATGCTGGCTTTGCGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp TCCTCGGATGCGGACGGCAGCAGCTTCCCCGACGTGGCACTTGTGGTGGTGGGTTGGTACAGCAGCTGGTaGTCTTTCTCCTGTACCATC +
Preference number: 5 (lower is better)
Translates to: SSDADGSSFPDVALVVVGWYSSW*SFSCTI
Trigger: GATGGTACAGGAGAAAGACAACCAGCTGCTGTACCA...ACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGTCCGCATCCGAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp CGGACGGCAGCAGCTTCCCCGACGTGGCACTTGTGGTGGTGGGTAGCTTCTGGGCTCAGGAACGCCATCTaGCAGTTTGTCTTCAATGGC +
Preference number: 5 (lower is better)
Translates to: RTAAASPTWHLWWWVASGLRNAI*QFVFNG
Trigger: GCCATTGAAGACAAACTGCAAGATGGCGTTCCTGAG...CCCAGAAGCTACCCACCACCACAAGTGCCACGTCGGGGAAGCTGCTGCCGTCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS GCA 90 bp CACAAGATCACGAGTGGCCCGGATCACAAACAGGCAGACCAGAGGTaGAAAGAGCGTGAACCAGGGCAGTGTGGAGATCTCGGGGATGCC +
Preference number: 5 (lower is better)
Translates to: HKITSGPDHKQADQR*KEREPGQCGDLGDA
Trigger: GGCATCCCCGAGATCTCCACACTGCCCTGGTTCACGCTCTTTGCACCTCTGGTCTGCCTGTTTGTGATCCGGGCCACTCGTGATCTTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CCA 90 bp GTGACCAGTGCTTCCTCATCAGGGGAGGCAGCCTGGTACAGCAGCTaGTTGTCTTTCTCCTGTACCATCACGGTGTGGCAGATGGCCAGC +
Preference number: 5 (lower is better)
Translates to: VTSASSSGEAAWYSS*LSFSCTITVWQMAS
Trigger: GCTGGCCATCTGCCACACCGTGATGGTACAGGAGAAAGACAACCAGCTGCTGTACCAGGCTGCCTCCCCTGATGAGGAAGCACTGGTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp GAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCTGCCTGAACTTCAAGTaGGTCTCCCCGTCGATGTCT +
Preference number: 5 (lower is better)
Translates to: EMVPCSTPGLCSLPRDCCCLNFK*VSPSMS
Trigger: AGACATCGACGGGGAGACCAACTTGAAGTTCAGGCA...GCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp CCCTTAGGGCGCTGTTTCAAGACAGTTCTATGGATTGTGCGCAAAGCCAGCATGTGGCCCAGCTGGTCGTaGAGACTGGTGCTGCGGGCC +
Preference number: 5 (lower is better)
Translates to: PLGRCFKTVLWIVRKASMWPSWS*RLVLRA
Trigger: GGCCCGCAGCACCAGTCTCAACGACCAGCTGGGCCA...CATGCTGGCTTTGCGCACAATCCATAGAACTGTCTTGAAACAGCGCCCTAAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp ACTGGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATACAAGGGCCTTTTGCTaGGGGGTCACCCTGCAGCAG +
Preference number: 5 (lower is better)
Translates to: TGYACCFKGRGSCALELHTRAFC*GVTLQQ
Trigger: CTGCTGCAGGGTGACCCCCAAGCAAAAGGCCCTTGT...ATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCCAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CAA 90 bp ACTGGCTATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATTGGGAGCTGCCAGCCTaGGACATGTCAGAGCTGACC +
Preference number: 5 (lower is better)
Translates to: TGYACCFKGRGSCALELHWELPA*DMSELT
Trigger: GGTCAGCTCTGACATGTCCAAGGCTGGCAGCTCCCA...ATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCATAGCCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS TCA 90 bp TGGCCAGAACCTGGTAGACCCGTTCCTCCCCCAGCTCCACCAGTGTaGTGGTGTCCTGGGTCCGAGACAGAAATACGTAGCCAAAGTTCC +
Preference number: 5 (lower is better)
Translates to: WPEPGRPVPPPAPPV*WCPGSETEIRSQSS
Trigger: GGAACTTTGGCTACGTATTTCTGTCTCGGACCCAGGACACCATCACACTGGTGGAGCTGGGGGAGGAACGGGTCTACCAGGTTCTGGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp ACACGCACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCGGGACAATGCTGTCTTaGCTGAGACACACCACGTCC +
Preference number: 5 (lower is better)
Translates to: TRTPCEMVPCSTPGLCSLGTMLS*LRHTTS
Trigger: GGACGTGGTGTGTCTCAGCAAAGACAGCATTGTCCC...GAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGCGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTTCTGTGTTGCGGATCTaGCAGCCACGCAGAAGCAGA +
Preference number: 5 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCISVLRI*QPRRSR
Trigger: TCTGCTTCTGCGTGGCTGCAAGATCCGCAACACAGA...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp CCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACCTCAGGAACGCCATCTaGCAGTTTGTCTTCAATGGC +
Preference number: 5 (lower is better)
Translates to: PCEMVPCSTPGLCSLPRDLRNAI*QFVFNG
Trigger: GCCATTGAAGACAAACTGCAAGATGGCGTTCCTGAG...GTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp ACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTCCCTTCTTGAGGCATTaGATGGTCTCAGGAACGCCA +
Preference number: 5 (lower is better)
Translates to: TPCEMVPCSTPGLCSLPRPFLRH*MVSGTP
Trigger: TGGCGTTCCTGAGACCATCAAATGCCTCAAGAAGGG...ACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp CCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTGTCCTGATCATGTTCACATCGTaGGCTCCATCTCCGATGGCC +
Preference number: 5 (lower is better)
Translates to: PCSTPGLCSLPRDCCIVLIMFTS*APSPMA
Trigger: GGCCATCGGAGATGGAGCCAACGATGTGAACATGAT...CAGGACAATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTGGACATCCGTGTGTTTaGGCTGGCTTGCCAGAGTGT +
Preference number: 5 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCIGHPCV*AGLPEC
Trigger: ACACTCTGGCAAGCCAGCCAAAACACACGGATGTCC...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS GCA 90 bp ATCTTCTTCGGGCTGGTAAGTTCATGGTGCGTGACCGTCAGAGCCTaGCTGAACTTCAAGTTGGTCTCCCCGTCGATGTCTGCGGTCTCC +
Preference number: 5 (lower is better)
Translates to: IFFGLVSSWCVTVRA*LNFKLVSPSMSAVS
Trigger: GGAGACCGCAGACATCGACGGGGAGACCAACTTGAAGTTCAGGCAGGCTCTGACGGTCACGCACCATGAACTTACCAGCCCGAAGAAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS GCA 90 bp GTACCCTGGAAGGAAGCCATCTTCTTCGGGCTGGTAAGTTCATGGTaGGTGACCGTCAGAGCCTGCCTGAACTTCAAGTTGGTCTCCCCG +
Preference number: 5 (lower is better)
Translates to: VPWKEAIFFGLVSSW*VTVRACLNFKLVSP
Trigger: CGGGGAGACCAACTTGAAGTTCAGGCAGGCTCTGACGGTCACGCACCATGAACTTACCAGCCCGAAGAAGATGGCTTCCTTCCAGGGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp ATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTGTTGCATTCCCTTCTTGAGGCATTaGATGGTCTCAGGAACGCCA +
Preference number: 5 (lower is better)
Translates to: MVPCSTPGLCSLPRDCCIPFLRH*MVSGTP
Trigger: TGGCGTTCCTGAGACCATCAAATGCCTCAAGAAGGG...AATGCAACAGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp CCTCATGGCCGGCTCCACGGCTACTTCTTCACTCGGGGCCTCCTCTTCCCCCTTCCCAAGAATTCTCCATaGATAACCAAGGCCATGTTG +
Preference number: 5 (lower is better)
Translates to: PHGRLHGYFFTRGLLFPLPKNSP*ITKAML
Trigger: CAACATGGCCTTGGTTATCAATGGAGAATTCTTGGG...AAGGGGGAAGAGGAGGCCCCGAGTGAAGAAGTAGCCGTGGAGCCGGCCATGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS TCA 90 bp TGCTGGCCAGCAGGAGCAAGTCGGCCGGGACAATGCTGTCTTTGCTaGGACACACCACGTCCCCCACACATAGATTCTTCCATTTCTTCC +
Preference number: 5 (lower is better)
Translates to: CWPAGASRPGQCCLC*DTPRPPHIDSSISS
Trigger: GGAAGAAATGGAAGAATCTATGTGTGGGGGACGTGGTGTGTCTCAGCAAAGACAGCATTGTCCCGGCCGACTTGCTCCTGCTGGCCAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS TCA 90 bp GAGCCAGGAACCAGCCTTCATACAGGGGCTGTGCAGAGAAGCCGTTaGCTAGAGAGAACCATATCTGGGCCATCATGCTGGCCACTGTCT +
Preference number: 5 (lower is better)
Translates to: EPGTSLHTGAVQRSR*LERTISGPSCWPLS
Trigger: AGACAGTGGCCAGCATGATGGCCCAGATATGGTTCTCTCTAGTCAACGGCTTCTCTGCACAGCCCCTGTATGAAGGCTGGTTCCTGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CAA 90 bp ATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTGGTACAGCAGCTGGTaGTCTTTCTCCTGTACCATC +
Preference number: 5 (lower is better)
Translates to: MPAALRAGAAVHLSCMELWYSSW*SFSCTI
Trigger: GATGGTACAGGAGAAAGACAACCAGCTGCTGTACCA...GAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp GCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTGCCAATGTCCGCAGTCTaGATCATGTTCACATCGTTG +
Preference number: 5 (lower is better)
Translates to: ACCFKGRGSCALELHGALPMSAV*IMFTSL
Trigger: CAACGATGTGAACATGATCAAGACTGCGGACATTGG...CAGAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CCA 90 bp ACTGTACCCTGGAAGGAAGCCATCTTCTTCGGGCTGGTAAGTTCATaGTGCGTGACCGTCAGAGCCTGCCTGAACTTCAAGTTGGTCTCC +
Preference number: 5 (lower is better)
Translates to: TVPWKEAIFFGLVSS*CVTVRACLNFKLVS
Trigger: GGAGACCAACTTGAAGTTCAGGCAGGCTCTGACGGTCACGCACCATGAACTTACCAGCCCGAAGAAGATGGCTTCCTTCCAGGGTACAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp GCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTGAGGAAGGAGAAGATGTaGTATTTGGCAGTGTGGATG +
Preference number: 5 (lower is better)
Translates to: ACCFKGRGSCALELHGALRKEKM*YLAVWM
Trigger: CATCCACACTGCCAAATACAACATCTTCTCCTTCCT...CAGAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp CATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTAGGAAGGAGAAGATGTaGTATTTGGCAGTGTGGATG +
Preference number: 5 (lower is better)
Translates to: HVRWCLAPLQGSAHSPVTRKEKM*YLAVWM
Trigger: CATCCACACTGCCAAATACAACATCTTCTCCTTCCT...AGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp TGGTGGTGGGTAGCTTCTGGGTCTCAGAGTCTCTGTGAATGGTGGGCTGTTTCTGGGACAATGCTGTCTTaGCTGAGACACACCACGTCC +
Preference number: 5 (lower is better)
Translates to: WWWVASGSQSLCEWWAVSGTMLS*LRHTTS
Trigger: GGACGTGGTGTGTCTCAGCAAAGACAGCATTGTCCC...AGAAACAGCCCACCATTCACAGAGACTCTGAGACCCAGAAGCTACCCACCACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp ATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCCCAATGTCCGCAGTCTaGATCATGTTCACATCGTTG +
Preference number: 5 (lower is better)
Translates to: MPAALRAGAAVHLSCMELPMSAV*IMFTSL
Trigger: CAACGATGTGAACATGATCAAGACTGCGGACATTGG...GAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS TCA 90 bp TCCAAAGGGTACTTCCTGCTGTTCCACTCCAGACTCCCCACAAAATaGTGCATTCGGCTGTTGGGTTCCTCGCAAGTCACTGTACCCTGG +
Preference number: 5 (lower is better)
Translates to: SKGYFLLFHSRLPTK*CIRLLGSSQVTVPW
Trigger: CCAGGGTACAGTGACTTGCGAGGAACCCAACAGCCGAATGCATCATTTTGTGGGGAGTCTGGAGTGGAACAGCAGGAAGTACCCTTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS TCA 90 bp AAAGTCATGGAGCTGAGTGAGACAGCAAGAGATTGTGGATATGCCTaGTGGGAGTCCTGCACTGTCAGCCGCTGGATTAGCTCGCAGGGA +
Preference number: 5 (lower is better)
Translates to: KVMELSETARDCGYA*WESCTVSRWISSQG
Trigger: TCCCTGCGAGCTAATCCAGCGGCTGACAGTGCAGGACTCCCATCAGGCATATCCACAATCTCTTGCTGTCTCACTCAGCTCCATGACTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219648.2
CDS-3UTR CAA 90 bp GCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCTGTTAATGTTCCCCTTCTaGAGGCATTTGATGGTCTCA +
Preference number: 5 (lower is better)
Translates to: ACCFKGRGSCALELHGALLMFPF*RHLMVS
Trigger: TGAGACCATCAAATGCCTCAAGAAGGGGAACATTAA...CAGAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp CATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCCCCCGTGACTTCCAAGAATTCTCCATaGATAACCAAGGCCATGTTG +
Preference number: 5 (lower is better)
Translates to: HVRWCLAPLQGSAHSPVTSKNSP*ITKAML
Trigger: CAACATGGCCTTGGTTATCAATGGAGAATTCTTGGA...AGTCACGGGGGAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS TCA 90 bp GAAGATGAAGAAGGACTCCATCGCGTCCGAGCGCCCGTGGGTGGGTaGCATGTAGTAATGCTTGGCTTTGAACTGTTTCACCATGAAGGT +
Preference number: 5 (lower is better)
Translates to: EDEEGLHRVRAPVGG*HVVMLGFELFHHEG
Trigger: ACCTTCATGGTGAAACAGTTCAAAGCCAAGCATTACTACATGTCACCCACCCACGGGCGCTCGGACGCGATGGAGTCCTTCTTCATCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS TCA 90 bp CTTGGTGTAGAGGCAGATGGAGCCCTCTGGGTTTCGGACCAACACTaGCATCCGTTTGCGAACGCTGTTAAAATCCATCATGGCCAGAAC +
Preference number: 5 (lower is better)
Translates to: LGVEADGALWVSDQH*HPFANAVKIHHGQN
Trigger: GTTCTGGCCATGATGGATTTTAACAGCGTTCGCAAACGGATGTCAGTGTTGGTCCGAAACCCAGAGGGCTCCATCTGCCTCTACACCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CCA 90 bp CTGGTCGTTGAGACTGGTGCTGCGGGCCTTGGCTGGCATGTCCAGTaGCTCGTAGTACATATTGAGGTCCCAGTTAATGAAAATGCTGTT +
Preference number: 5 (lower is better)
Translates to: LVVETGAAGLGWHVQ*LVVHIEVPVNENAV
Trigger: AACAGCATTTTCATTAACTGGGACCTCAATATGTACTACGAGCCACTGGACATGCCAGCCAAGGCCCGCAGCACCAGTCTCAACGACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CCA 90 bp CTTCTCTGCGGTCACATCCTGCTCAAACAGGCCAATATACAGGACTaGAAGCGTGGAATACAGCAGGTTAAAGAGAGCCAGGAACCAGCC +
Preference number: 5 (lower is better)
Translates to: LLCGHILLKQANIQD*KRGIQQVKESQEPA
Trigger: GGCTGGTTCCTGGCTCTCTTTAACCTGCTGTATTCCACGCTTCCAGTCCTGTATATTGGCCTGTTTGAGCAGGATGTGACCGCAGAGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CAA 90 bp ACACGCACTCCATGTGAGATGGTGCCTTGCTCCACTCCAGGGCTCTGCTCACTCTTAATGTTCCCCTTCTaGAGGCATTTGATGGTCTCA +
Preference number: 5 (lower is better)
Translates to: TRTPCEMVPCSTPGLCSLLMFPF*RHLMVS
Trigger: TGAGACCATCAAATGCCTCAAGAAGGGGAACATTAA...GAGTGAGCAGAGCCCTGGAGTGGAGCAAGGCACCATCTCACATGGAGTGCGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp ATGCCTGCTGCTTTAAGGGCAGGGGCAGCTGTGCACTTGAGCTGCATGGAGCTCACCGTTACAAAGAAGTaGATCATGGATGTGATGGTG +
Preference number: 5 (lower is better)
Translates to: MPAALRAGAAVHLSCMELTVTKK*IMDVMV
Trigger: CACCATCACATCCATGATCAACTTCTTTGTAACGGT...GAGCTCCATGCAGCTCAAGTGCACAGCTGCCCCTGCCCTTAAAGCAGCAGGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS-3UTR CAA 90 bp TACCACAAGCATGACCTGCTCAAACAGGCCAATATACAGGACTGGAAGCGTGGAATCATGTTCACATCGTaGGCTCCATCTCCGATGGCC +
Preference number: 5 (lower is better)
Translates to: YHKHDLLKQANIQDWKRGIMFTS*APSPMA
Trigger: GGCCATCGGAGATGGAGCCAACGATGTGAACATGAT...TCCACGCTTCCAGTCCTGTATATTGGCCTGTTTGAGCAGGTCATGCTTGTGGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS TCA 90 bp CTGCCTTGTACTTCTTCTGCCTCCAGCATAGAAAGCCCTTCTTCTTaGACTGCTTGTGATAGGTTCTGTCATTGGCCTTCACCTCCCAGG +
Preference number: 5 (lower is better)
Translates to: LPCTSSASSIESPSS*TACDRFCHWPSPPR
Trigger: CCTGGGAGGTGAAGGCCAATGACAGAACCTATCACAAGCAGTTCAAGAAGAAGGGCTTTCTATGCTGGAGGCAGAAGAAGTACAAGGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219648.2
CDS GCA 90 bp ATGTACAACTCCGGCATCTTTAGGCTCTTCTCTGCGGTCACATCCTaGTCAAACAGGCCAATATACAGGACTGGAAGCGTGGAATACAGC +
Preference number: 5 (lower is better)
Translates to: MYNSGIFRLFSAVTS*SNRPIYRTGSVEYS
Trigger: GCTGTATTCCACGCTTCCAGTCCTGTATATTGGCCTGTTTGAGCAGGATGTGACCGCAGAGAAGAGCCTAAAGATGCCGGAGTTGTACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS GCA 90 bp ACCACCTGCTGGTATTTCTTCACCAATGCCACCACAAGGGCCTTTTaGTTGGGGGTCACCCAAGAATTCTCCATTGATAACCAAGGCCAT +
Preference number: 5 (lower is better)
Translates to: TTCWYFFTNATTRAF*LGVTQEFSIDNQGH
Trigger: ATGGCCTTGGTTATCAATGGAGAATTCTTGGGTGACCCCCAAGCAAAAGGCCCTTGTGGTGGCATTGGTGAAGAAATACCAGCAGGTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS CCA 90 bp GGTTCAGAGGCAGGAAGGAGAAGATGTTGTATTTGGCAGTGTGGATaGCGTTGCTCTTGTACTTCTTCTGCCTCCAGCATAGAAAGCCCT +
Preference number: 5 (lower is better)
Translates to: GSEAGRRRCCIWQCG*RCSCTSSASSIESP
Trigger: AGGGCTTTCTATGCTGGAGGCAGAAGAAGTACAAGAGCAACGCCATCCACACTGCCAAATACAACATCTTCTCCTTCCTGCCTCTGAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CCA 90 bp CCTGCTGGTATTTCTTCACCAATGCCACCACAAGGGCCTTTTGCTTaGGGGTCACCCAAGAATTCTCCATTGATAACCAAGGCCATGTTG +
Preference number: 5 (lower is better)
Translates to: PAGISSPMPPQGPFA*GSPKNSPLITKAML
Trigger: CAACATGGCCTTGGTTATCAATGGAGAATTCTTGGGTGACCCCCAAGCAAAAGGCCCTTGTGGTGGCATTGGTGAAGAAATACCAGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS-3UTR CAA 90 bp GTACTTTACCACAAGCATGACCTGCTCAAACAGGCCAATATACAGGACTGGAAGTCTGTGTTGCGGATCTaGCAGCCACGCAGAAGCAGA +
Preference number: 5 (lower is better)
Translates to: VLYHKHDLLKQANIQDWKSVLRI*QPRRSR
Trigger: TCTGCTTCTGCGTGGCTGCAAGATCCGCAACACAGA...CTTCCAGTCCTGTATATTGGCCTGTTTGAGCAGGTCATGCTTGTGGTAAAGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS TCA 90 bp TGCTCTTGTACTTCTTCTGCCTCCAGCATAGAAAGCCCTTCTTCTTaGACTGCTTGTGATAGGTTCTGTCATTGGCCTTCACCTCCCAGG +
Preference number: 5 (lower is better)
Translates to: CSCTSSASSIESPSS*TACDRFCHWPSPPR
Trigger: CCTGGGAGGTGAAGGCCAATGACAGAACCTATCACAAGCAGTTCAAGAAGAAGGGCTTTCTATGCTGGAGGCAGAAGAAGTACAAGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS GCA 90 bp GAGGCAGGAAGGAGAAGATGTTGTATTTGGCAGTGTGGATGGCGTTaGTCTTGTACTTCTTCTGCCTCCAGCATAGAAAGCCCTTCTTCT +
Preference number: 5 (lower is better)
Translates to: EAGRRRCCIWQCGWR*SCTSSASSIESPSS
Trigger: AGAAGAAGGGCTTTCTATGCTGGAGGCAGAAGAAGTACAAGAGCAACGCCATCCACACTGCCAAATACAACATCTTCTCCTTCCTGCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CCA 90 bp AGATTCTTCCATTTCTTCCACAGGAAACTCTTCCCCCTCAGGATCTaGCAAGGCCTGTTGTTGATGATCTTATCGCTCCTGTGTCGACCA +
Preference number: 5 (lower is better)
Translates to: RFFHFFHRKLFPLRI*QGLLLMILSLLCRP
Trigger: TGGTCGACACAGGAGCGATAAGATCATCAACAACAGGCCTTGCCAGATCCTGAGGGGGAAGAGTTTCCTGTGGAAGAAATGGAAGAATCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CCA 90 bp TGGGGGTCACCCAAGAATTCTCCATTGATAACCAAGGCCATGTTGTaGTGGGTCATCATTTTGAACGCCTTCTGGTGTACGTTGTCTTCC +
Preference number: 5 (lower is better)
Translates to: WGSPKNSPLITKAML*WVIILNAFWCTLSS
Trigger: GGAAGACAACGTACACCAGAAGGCGTTCAAAATGATGACCCACCACAACATGGCCTTGGTTATCAATGGAGAATTCTTGGGTGACCCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS CCA 90 bp GGGTCACCCAAGAATTCTCCATTGATAACCAAGGCCATGTTGTGGTaGGTCATCATTTTGAACGCCTTCTGGTGTACGTTGTCTTCCCAA +
Preference number: 5 (lower is better)
Translates to: GSPKNSPLITKAMLW*VIILNAFWCTLSSQ
Trigger: TTGGGAAGACAACGTACACCAGAAGGCGTTCAAAATGATGACCCACCACAACATGGCCTTGGTTATCAATGGAGAATTCTTGGGTGACCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS TCA 90 bp CAGCAGGCATTAATTGAGGTTCTACTTAGTGCAAAGTCATGGAGCTaGGTGAGACAGCAAGAGATTGTGGATATGCCTGATGGGAGTCCT +
Preference number: 5 (lower is better)
Translates to: QQALIEVLLSAKSWS*VRQQEIVDMPDGSP
Trigger: AGGACTCCCATCAGGCATATCCACAATCTCTTGCTGTCTCACTCAGCTCCATGACTTTGCACTAAGTAGAACCTCAATTAATGCCTGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219648.2
CDS CAA 72 bp GCCCTCTCCCGCTGCACCTCTGGGCTCTCCCGGATCTaGGAGTCGGCTGAGTGGGACGTTCCCAGAGAGGGG +
Preference number: 6 (lower is better)
Translates to: ALSRCTSGLSRI*ESAEWDVPREG
Trigger: CCCCTCTCTGGGAACGTCCCACTCAGCCGACTCCAAGATCCGGGAGAGCCCAGAGGTGCAGCGGGAGAGGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS CCA 72 bp ACCGGCTCCTGGGCGACCTCATCCACCACTGCATTCTaGACTAGGGCTCGGGGCTCCTTGCGCAAGGACAGG +
Preference number: 6 (lower is better)
Translates to: TGSWATSSTTAF*TRARGSLRKDR
Trigger: CCTGTCCTTGCGCAAGGAGCCCCGAGCCCTAGTCCAGAATGCAGTGGTGGATGAGGTCGCCCAGGAGCCGGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS TCA 72 bp ACGGTGTGGCAGATGGCCAGCAGACGCCAAAACTCCTaGACCGCTCGGTCCTGCCGGCCTTGCACCAGGGAT +
Preference number: 6 (lower is better)
Translates to: TVWQMASRRQNS*TARSCRPCTRD
Trigger: ATCCCTGGTGCAAGGCCGGCAGGACCGAGCGGTTCAGGAGTTTTGGCGTCTGCTGGCCATCTGCCACACCGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS TCA 72 bp CTGCACCTCTGGGCTCTCCCGGATCTTGGAGTCGGCTaGGTGGGACGTTCCCAGAGAGGGGCCAGCGTTTCT +
Preference number: 6 (lower is better)
Translates to: LHLWALPDLGVG*VGRSQRGASVS
Trigger: AGAAACGCTGGCCCCTCTCTGGGAACGTCCCACTCAGCCGACTCCAAGATCCGGGAGAGCCCAGAGGTGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS CCA 72 bp ACCTCTGGGCTCTCCCGGATCTTGGAGTCGGCTGAGTaGGACGTTCCCAGAGAGGGGCCAGCGTTTCTCCAC +
Preference number: 6 (lower is better)
Translates to: TSGLSRILESAE*DVPREGPAFLH
Trigger: GTGGAGAAACGCTGGCCCCTCTCTGGGAACGTCCCACTCAGCCGACTCCAAGATCCGGGAGAGCCCAGAGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS GCA 72 bp GGGCCAGCACGTAGTCGCTGTTCTGAACTGCCTGCATaGCCTCCTGGCCTGCCAGTCCTACACCAATGTCCG +
Preference number: 6 (lower is better)
Translates to: GPARSRCSELPA*PPGLPVLHQCP
Trigger: CGGACATTGGTGTAGGACTGGCAGGCCAGGAGGGCATGCAGGCAGTTCAGAACAGCGACTACGTGCTGGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS GCA 72 bp GCAGAACTGGGCCAGCACGTAGTCGCTGTTCTGAACTaGCTGCATGCCCTCCTGGCCTGCCAGTCCTACACC +
Preference number: 6 (lower is better)
Translates to: AELGQHVVAVLN*LHALLACQSYT
Trigger: GGTGTAGGACTGGCAGGCCAGGAGGGCATGCAGGCAGTTCAGAACAGCGACTACGTGCTGGCCCAGTTCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS TCA 72 bp CCTGGTAGACCCGTTCCTCCCCCAGCTCCACCAGTGTaGTGGTGTCCTGGGTCCGAGACAGAAATACGTAGC +
Preference number: 6 (lower is better)
Translates to: PGRPVPPPAPPV*WCPGSETEIRS
Trigger: GCTACGTATTTCTGTCTCGGACCCAGGACACCATCACACTGGTGGAGCTGGGGGAGGAACGGGTCTACCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CAA 90 bp ACCAGTGCTTCCTCATCAGGGGAGGCAGCCTGGTACAGCAGCTGGTaGTCTTTCTCCTGTACCATCACGGTGTGGCAGATGGCCAGCAGA +
Preference number: 6 (lower is better)
Translates to: TSASSSGEAAWYSSW*SFSCTITVWQMASR
Trigger: TCTGCTGGCCATCTGCCACACCGTGATGGTACAGGAGAAAGACAACCAGCTGCTGTACCAGGCTGCCTCCCCTGATGAGGAAGCACTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS GCA 72 bp TTCTGTTCCATCTTATTATACACCTGGTGCAGGGCCTaGGCACGGTTCTGTAGCAGGAGGGCGGCCTCCTGG +
Preference number: 6 (lower is better)
Translates to: FCSILLYTWCRA*ARFCSRRAASW
Trigger: CCAGGAGGCCGCCCTCCTGCTACAGAACCGTGCGCAGGCCCTGCACCAGGTGTATAATAAGATGGAACAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS GCA 72 bp CCACCACTGCATTCTGGACTAGGGCTCGGGGCTCCTTaGGCAAGGACAGGAGGAGCTGATCCAAGAATTCTC +
Preference number: 6 (lower is better)
Translates to: PPLHSGLGLGAP*ARTGGADPRIL
Trigger: GAGAATTCTTGGATCAGCTCCTCCTGTCCTTGCGCAAGGAGCCCCGAGCCCTAGTCCAGAATGCAGTGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS CCA 72 bp CAGCTGGTCGTTGAGACTGGTGCTGCGGGCCTTGGCTaGCATGTCCAGTGGCTCGTAGTACATATTGAGGTC +
Preference number: 6 (lower is better)
Translates to: QLVVETGAAGLG*HVQWLVVHIEV
Trigger: GACCTCAATATGTACTACGAGCCACTGGACATGCCAGCCAAGGCCCGCAGCACCAGTCTCAACGACCAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CCA 72 bp GCTTCCTCATCAGGGGAGGCAGCCTGGTACAGCAGCTaGTTGTCTTTCTCCTGTACCATCACGGTGTGGCAG +
Preference number: 6 (lower is better)
Translates to: ASSSGEAAWYSS*LSFSCTITVWQ
Trigger: CTGCCACACCGTGATGGTACAGGAGAAAGACAACCAGCTGCTGTACCAGGCTGCCTCCCCTGATGAGGAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CCA 72 bp GCGGTGACCAGTGCTTCCTCATCAGGGGAGGCAGCCTaGTACAGCAGCTGGTTGTCTTTCTCCTGTACCATC +
Preference number: 6 (lower is better)
Translates to: AVTSASSSGEAA*YSSWLSFSCTI
Trigger: GATGGTACAGGAGAAAGACAACCAGCTGCTGTACCAGGCTGCCTCCCCTGATGAGGAAGCACTGGTCACCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CAA 72 bp GCCAGCAGGAGCAAGTCGGCCGGGACAATGCTGTCTTaGCTGAGACACACCACGTCCCCCACACATAGATTC +
Preference number: 6 (lower is better)
Translates to: ASRSKSAGTMLS*LRHTTSPTHRF
Trigger: GAATCTATGTGTGGGGGACGTGGTGTGTCTCAGCAAAGACAGCATTGTCCCGGCCGACTTGCTCCTGCTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS GCA 72 bp GGGCTGGTAAGTTCATGGTGCGTGACCGTCAGAGCCTaGCTGAACTTCAAGTTGGTCTCCCCGTCGATGTCT +
Preference number: 6 (lower is better)
Translates to: GLVSSWCVTVRA*LNFKLVSPSMS
Trigger: AGACATCGACGGGGAGACCAACTTGAAGTTCAGGCAGGCTCTGACGGTCACGCACCATGAACTTACCAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS GCA 72 bp AGCTGCAGGTTCTGTTCCATCTTATTATACACCTGGTaGAGGGCCTGCGCACGGTTCTGTAGCAGGAGGGCG +
Preference number: 6 (lower is better)
Translates to: SCRFCSILLYTW*RACARFCSRRA
Trigger: CGCCCTCCTGCTACAGAACCGTGCGCAGGCCCTGCACCAGGTGTATAATAAGATGGAACAGAACCTGCAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CAA 72 bp ACGCCAAAACTCCTGAACCGCTCGGTCCTGCCGGCCTaGCACCAGGGATTCCAGCTCCTTATTGTAGAACTG +
Preference number: 6 (lower is better)
Translates to: TPKLLNRSVLPA*HQGFQLLIVEL
Trigger: CAGTTCTACAATAAGGAGCTGGAATCCCTGGTGCAAGGCCGGCAGGACCGAGCGGTTCAGGAGTTTTGGCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CAA 72 bp TCCTCATCAGGGGAGGCAGCCTGGTACAGCAGCTGGTaGTCTTTCTCCTGTACCATCACGGTGTGGCAGATG +
Preference number: 6 (lower is better)
Translates to: SSSGEAAWYSSW*SFSCTITVWQM
Trigger: CATCTGCCACACCGTGATGGTACAGGAGAAAGACAACCAGCTGCTGTACCAGGCTGCCTCCCCTGATGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CAA 90 bp TCTGTGCTGGCCAGCAGGAGCAAGTCGGCCGGGACAATGCTGTCTTaGCTGAGACACACCACGTCCCCCACACATAGATTCTTCCATTTC +
Preference number: 6 (lower is better)
Translates to: SVLASRSKSAGTMLS*LRHTTSPTHRFFHF
Trigger: GAAATGGAAGAATCTATGTGTGGGGGACGTGGTGTGTCTCAGCAAAGACAGCATTGTCCCGGCCGACTTGCTCCTGCTGGCCAGCACAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CAA 90 bp AGAGCCAGGAACCAGCCTTCATACAGGGGCTGTGCAGAGAAGCCGTaGACTAGAGAGAACCATATCTGGGCCATCATGCTGGCCACTGTC +
Preference number: 6 (lower is better)
Translates to: RARNQPSYRGCAEKP*TRENHIWAIMLATV
Trigger: GACAGTGGCCAGCATGATGGCCCAGATATGGTTCTCTCTAGTCAACGGCTTCTCTGCACAGCCCCTGTATGAAGGCTGGTTCCTGGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS CCA 72 bp AGCAGCTGCAGGTTCTGTTCCATCTTATTATACACCTaGTGCAGGGCCTGCGCACGGTTCTGTAGCAGGAGG +
Preference number: 6 (lower is better)
Translates to: SSCRFCSILLYT*CRACARFCSRR
Trigger: CCTCCTGCTACAGAACCGTGCGCAGGCCCTGCACCAGGTGTATAATAAGATGGAACAGAACCTGCAGCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS TCA 72 bp ACCAGCCTTCATACAGGGGCTGTGCAGAGAAGCCGTTaGCTAGAGAGAACCATATCTGGGCCATCATGCTGG +
Preference number: 6 (lower is better)
Translates to: TSLHTGAVQRSR*LERTISGPSCW
Trigger: CCAGCATGATGGCCCAGATATGGTTCTCTCTAGTCAACGGCTTCTCTGCACAGCCCCTGTATGAAGGCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS CCA 72 bp TGGAAGGAAGCCATCTTCTTCGGGCTGGTAAGTTCATaGTGCGTGACCGTCAGAGCCTGCCTGAACTTCAAG +
Preference number: 6 (lower is better)
Translates to: WKEAIFFGLVSS*CVTVRACLNFK
Trigger: CTTGAAGTTCAGGCAGGCTCTGACGGTCACGCACCATGAACTTACCAGCCCGAAGAAGATGGCTTCCTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CCA 72 bp GAGACTGGTGCTGCGGGCCTTGGCTGGCATGTCCAGTaGCTCGTAGTACATATTGAGGTCCCAGTTAATGAA +
Preference number: 6 (lower is better)
Translates to: ETGAAGLGWHVQ*LVVHIEVPVNE
Trigger: TTCATTAACTGGGACCTCAATATGTACTACGAGCCACTGGACATGCCAGCCAAGGCCCGCAGCACCAGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS GCA 72 bp AAGGAAGCCATCTTCTTCGGGCTGGTAAGTTCATGGTaGGTGACCGTCAGAGCCTGCCTGAACTTCAAGTTG +
Preference number: 6 (lower is better)
Translates to: KEAIFFGLVSSW*VTVRACLNFKL
Trigger: CAACTTGAAGTTCAGGCAGGCTCTGACGGTCACGCACCATGAACTTACCAGCCCGAAGAAGATGGCTTCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS GCA 72 bp TCCGGCATCTTTAGGCTCTTCTCTGCGGTCACATCCTaGTCAAACAGGCCAATATACAGGACTGGAAGCGTG +
Preference number: 6 (lower is better)
Translates to: SGIFRLFSAVTS*SNRPIYRTGSV
Trigger: CACGCTTCCAGTCCTGTATATTGGCCTGTTTGAGCAGGATGTGACCGCAGAGAAGAGCCTAAAGATGCCGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS CCA 72 bp ATTCGGCTGTTGGGTTCCTCGCAAGTCACTGTACCCTaGAAGGAAGCCATCTTCTTCGGGCTGGTAAGTTCA +
Preference number: 6 (lower is better)
Translates to: IRLLGSSQVTVP*KEAIFFGLVSS
Trigger: TGAACTTACCAGCCCGAAGAAGATGGCTTCCTTCCAGGGTACAGTGACTTGCGAGGAACCCAACAGCCGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CCA 72 bp ACTCCAGACTCCCCACAAAATGATGCATTCGGCTGTTaGGTTCCTCGCAAGTCACTGTACCCTGGAAGGAAG +
Preference number: 6 (lower is better)
Translates to: TPDSPQNDAFGC*VPRKSLYPGRK
Trigger: CTTCCTTCCAGGGTACAGTGACTTGCGAGGAACCCAACAGCCGAATGCATCATTTTGTGGGGAGTCTGGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CAA 72 bp GAGCCCTCTGGGTTTCGGACCAACACTGACATCCGTTaGCGAACGCTGTTAAAATCCATCATGGCCAGAACC +
Preference number: 6 (lower is better)
Translates to: EPSGFRTNTDIR*RTLLKSIMART
Trigger: GGTTCTGGCCATGATGGATTTTAACAGCGTTCGCAAACGGATGTCAGTGTTGGTCCGAAACCCAGAGGGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CAA 72 bp AACCAGCCTTCATACAGGGGCTGTGCAGAGAAGCCGTaGACTAGAGAGAACCATATCTGGGCCATCATGCTG +
Preference number: 6 (lower is better)
Translates to: NQPSYRGCAEKP*TRENHIWAIML
Trigger: CAGCATGATGGCCCAGATATGGTTCTCTCTAGTCAACGGCTTCTCTGCACAGCCCCTGTATGAAGGCTGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS GCA 72 bp GCAGAAGCAGATTCCCGATGTCCAAAGGGTACTTCCTaGTGTTCCACTCCAGACTCCCCACAAAATGATGCA +
Preference number: 6 (lower is better)
Translates to: AEADSRCPKGTS*CSTPDSPQNDA
Trigger: TGCATCATTTTGTGGGGAGTCTGGAGTGGAACAGCAGGAAGTACCCTTTGGACATCGGGAATCTGCTTCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CCA 72 bp CATTTCTTCCACAGGAAACTCTTCCCCCTCAGGATCTaGCAAGGCCTGTTGTTGATGATCTTATCGCTCCTG +
Preference number: 6 (lower is better)
Translates to: HFFHRKLFPLRI*QGLLLMILSLL
Trigger: CAGGAGCGATAAGATCATCAACAACAGGCCTTGCCAGATCCTGAGGGGGAAGAGTTTCCTGTGGAAGAAATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CAA 72 bp TGCTCGTACAGGTTCAGAGGCAGGAAGGAGAAGATGTaGTATTTGGCAGTGTGGATGGCGTTGCTCTTGTAC +
Preference number: 6 (lower is better)
Translates to: CSYRFRGRKEKM*YLAVWMALLLY
Trigger: GTACAAGAGCAACGCCATCCACACTGCCAAATACAACATCTTCTCCTTCCTGCCTCTGAACCTGTACGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CAA 72 bp ACAGCACTCAGGAGGCTAAGGCAGAAAAATCCTGCCTaGTACTTCTTCTGCCTCCAGCATAGAAAGCCCTTC +
Preference number: 6 (lower is better)
Translates to: TALRRLRQKNPA*YFFCLQHRKPF
Trigger: GAAGGGCTTTCTATGCTGGAGGCAGAAGAAGTACAAGGCAGGATTTTTCTGCCTTAGCCTCCTGAGTGCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219648.2
CDS CAA 90 bp AGAGGCAGGAAGGAGAAGATGTTGTATTTGGCAGTGTGGATGGCGTaGCTCTTGTACTTCTTCTGCCTCCAGCATAGAAAGCCCTTCTTC +
Preference number: 6 (lower is better)
Translates to: RGRKEKMLYLAVWMA*LLYFFCLQHRKPFF
Trigger: GAAGAAGGGCTTTCTATGCTGGAGGCAGAAGAAGTACAAGAGCAACGCCATCCACACTGCCAAATACAACATCTTCTCCTTCCTGCCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CAA 90 bp GCTTGGGGGTCACCCAAGAATTCTCCATTGATAACCAAGGCCATGTaGTGGTGGGTCATCATTTTGAACGCCTTCTGGTGTACGTTGTCT +
Preference number: 6 (lower is better)
Translates to: AWGSPKNSPLITKAM*WWVIILNAFWCTLS
Trigger: AGACAACGTACACCAGAAGGCGTTCAAAATGATGACCCACCACAACATGGCCTTGGTTATCAATGGAGAATTCTTGGGTGACCCCCAAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS CAA 90 bp ACCTGCTGGTATTTCTTCACCAATGCCACCACAAGGGCCTTTTGCTaGGGGGTCACCCAAGAATTCTCCATTGATAACCAAGGCCATGTT +
Preference number: 6 (lower is better)
Translates to: TCWYFFTNATTRAFC*GVTQEFSIDNQGHV
Trigger: AACATGGCCTTGGTTATCAATGGAGAATTCTTGGGTGACCCCCAAGCAAAAGGCCCTTGTGGTGGCATTGGTGAAGAAATACCAGCAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS CCA 72 bp GCAGGAAGGAGAAGATGTTGTATTTGGCAGTGTGGATaGCGTTGCTCTTGTACTTCTTCTGCCTCCAGCATA +
Preference number: 6 (lower is better)
Translates to: AGRRRCCIWQCG*RCSCTSSASSI
Trigger: TATGCTGGAGGCAGAAGAAGTACAAGAGCAACGCCATCCACACTGCCAAATACAACATCTTCTCCTTCCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CAA 72 bp GACATGTCAGAGCTGACCATAACCGTTACAAAGAAGTaGATCATGGATGTGATGGTGCCGTGGGTGATGGCT +
Preference number: 6 (lower is better)
Translates to: DMSELTITVTKK*IMDVMVPWVMA
Trigger: AGCCATCACCCACGGCACCATCACATCCATGATCAACTTCTTTGTAACGGTTATGGTCAGCTCTGACATGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020383.6
CDS TCA 72 bp TGGGTTCCGCTTTCGAAGCGTCCCATGTTCATCGTCTaGATCATAGATGCAGCCATTGATACAGCACTTCTT +
Preference number: 6 (lower is better)
Translates to: WVPLSKRPMFIV*IIDAAIDTALL
Trigger: AAGAAGTGCTGTATCAATGGCTGCATCTATGATTCAGACGATGAACATGGGACGCTTCGAAAGCGGAACCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS GCA 72 bp AGGAGAAGATGTTGTATTTGGCAGTGTGGATGGCGTTaGTCTTGTACTTCTTCTGCCTCCAGCATAGAAAGC +
Preference number: 6 (lower is better)
Translates to: RRRCCIWQCGWR*SCTSSASSIES
Trigger: GCTTTCTATGCTGGAGGCAGAAGAAGTACAAGAGCAACGCCATCCACACTGCCAAATACAACATCTTCTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS GCA 72 bp AGGCTAAGGCAGAAAAATCCTGCCTTGTACTTCTTCTaGCTCCAGCATAGAAAGCCCTTCTTCTTGAACTGC +
Preference number: 6 (lower is better)
Translates to: RLRQKNPALYFF*LQHRKPFFLNC
Trigger: GCAGTTCAAGAAGAAGGGCTTTCTATGCTGGAGGCAGAAGAAGTACAAGGCAGGATTTTTCTGCCTTAGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219648.2
CDS GCA 72 bp TGGTATTTCTTCACCAATGCCACCACAAGGGCCTTTTaGTTGGGGGTCACCCAAGAATTCTCCATTGATAAC +
Preference number: 6 (lower is better)
Translates to: WYFFTNATTRAF*LGVTQEFSIDN
Trigger: GTTATCAATGGAGAATTCTTGGGTGACCCCCAAGCAAAAGGCCCTTGTGGTGGCATTGGTGAAGAAATACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS TCA 72 bp TTGAGGTTCTACTTAGTGCAAAGTCATGGAGCTGAGTaGGACAGCAAGAGATTGTGGATATGCCTGATGGGA +
Preference number: 6 (lower is better)
Translates to: LRFYLVQSHGAE*DSKRLWICLMG
Trigger: TCCCATCAGGCATATCCACAATCTCTTGCTGTCTCACTCAGCTCCATGACTTTGCACTAAGTAGAACCTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219648.2
CDS CAA 72 bp AAGGAGAAGATGTTGTATTTGGCAGTGTGGATGGCGTaGCTCTTGTACTTCTTCTGCCTCCAGCATAGAAAG +
Preference number: 6 (lower is better)
Translates to: KEKMLYLAVWMA*LLYFFCLQHRK
Trigger: CTTTCTATGCTGGAGGCAGAAGAAGTACAAGAGCAACGCCATCCACACTGCCAAATACAACATCTTCTCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS CAA 72 bp TCACCCAAGAATTCTCCATTGATAACCAAGGCCATGTaGTGGTGGGTCATCATTTTGAACGCCTTCTGGTGT +
Preference number: 6 (lower is better)
Translates to: SPKNSPLITKAM*WWVIILNAFWC
Trigger: ACACCAGAAGGCGTTCAAAATGATGACCCACCACAACATGGCCTTGGTTATCAATGGAGAATTCTTGGGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS CAA 72 bp TATTTCTTCACCAATGCCACCACAAGGGCCTTTTGCTaGGGGGTCACCCAAGAATTCTCCATTGATAACCAA +
Preference number: 6 (lower is better)
Translates to: YFFTNATTRAFC*GVTQEFSIDNQ
Trigger: TTGGTTATCAATGGAGAATTCTTGGGTGACCCCCAAGCAAAAGGCCCTTGTGGTGGCATTGGTGAAGAAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220326.2
CDS CAA 72 bp AGCACCCATATTTTAATGTTCCCCTTCTTGAGGCATTaGATGGTCTCAGGAACGCCATCTTGCAGTTTGTCT +
Preference number: 6 (lower is better)
Translates to: STHILMFPFLRH*MVSGTPSCSLS
Trigger: AGACAAACTGCAAGATGGCGTTCCTGAGACCATCAAATGCCTCAAGAAGGGGAACATTAAAATATGGGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2
CDS TCA 72 bp TTAATTGAGGTTCTACTTAGTGCAAAGTCATGGAGCTaGGTGAGACAGCAAGAGATTGTGGATATGCCTGAT +
Preference number: 6 (lower is better)
Translates to: LIEVLLSAKSWS*VRQQEIVDMPD
Trigger: ATCAGGCATATCCACAATCTCTTGCTGTCTCACTCAGCTCCATGACTTTGCACTAAGTAGAACCTCAATTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219648.2
CDS CAA 72 bp CTGGTGTACGTTGTCTTCCCAATACCTTTCCAGTACTaGATTGATGTCCTTATCTTCCAGAATTATCATATT +
Preference number: 6 (lower is better)
Translates to: LVYVVFPIPFQY*IDVLIFQNYHI
Trigger: AATATGATAATTCTGGAAGATAAGGACATCAATCAAGTACTGGAAAGGTATTGGGAAGACAACGTACACCAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020383.6
ENSMUST00000220326.2