RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATP8B2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060671

Ensembl transcript IDs: ENSMUST00000069805.14, ENSMUST00000107396.8, ENSMUST00000166502.2, ENSMUST00000168276.8, ENSMUST00000168880.8, ENSMUST00000170696.2, ENSMUST00000170739.2, ENSMUST00000171422.2, ENSMUST00000171941.2

Found 471 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCGGCGCTGTCCCTGGGGTCTACTCCCTCTACCTCTACAAGCTGGTaGGGCTCACAGAGCAGTCCACCAGGCAGAGGAGGCAGGCTGCAT +
Preference number: 1 (lower is better)
Translates to: PALSLGSTPSTSTSW*GSQSSPPGRGGRLH
Trigger: ATGCAGCCTGCCTCCTCTGCCTGGTGGACTGCTCTGTGAGCCTCACCAGCTTGTAGAGGTAGAGGGAGTAGACCCCAGGGACAGCGCCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
3UTR GCA 90 bp AGTCCAGCACTAGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTaGCCTGGGGAGGCCACAGCACAGGTGAGGAGGGAGCCAGGACTA +
Preference number: 1 (lower is better)
Translates to: SPALAGLWRSKNPYV*PGEATAQVRREPGL
Trigger: TAGTCCTGGCTCCCTCCTCACCTGTGCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCTAGTGCTGGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR CCA 90 bp AGCACTAGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTaGGGAGGCCACAGCACAGGTGAGGAGGGAGCCAGGACTATGCTT +
Preference number: 1 (lower is better)
Translates to: STSRTLEIQEPVCVP*GGHSTGEEGARTML
Trigger: AAGCATAGTCCTGGCTCCCTCCTCACCTGTGCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCTAGTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR CCA 90 bp AGAGGGCAATGGTCTCTGGGACTCCCTGCTGAAGCTTGTCCTCAATaGCCGTGGCACCCAGCAGCATCATGTCACTCTCAACCTCTTCAT +
Preference number: 1 (lower is better)
Translates to: RGQWSLGLPAEACPQ*PWHPAASCHSQPLH
Trigger: ATGAAGAGGTTGAGAGTGACATGATGCTGCTGGGTGCCACGGCCATTGAGGACAAGCTTCAGCAGGGAGTCCCAGAGACCATTGCCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
3UTR GCA 90 bp TTGGTCCCTCCCAAGCTACTCCACCAGGTAGGGCATCCCAGTGTGTaGCAGTCTCCTCTTCCCAGGAGAGTTAAGACACTAACCACAACA +
Preference number: 1 (lower is better)
Translates to: LVPPKLLHQVGHPSV*QSPLPRRVKTLTTT
Trigger: TGTTGTGGTTAGTGTCTTAACTCTCCTGGGAAGAGGAGACTGGCACACACTGGGATGCCCTACCTGGTGGAGTAGCTTGGGAGGGACCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR CCA 90 bp CAATGGTCTCTGGGACTCCCTGCTGAAGCTTGTCCTCAATGGCCGTaGCACCCAGCAGCATCATGTCACTCTCAACCTCTTCATAGATGC +
Preference number: 1 (lower is better)
Translates to: QWSLGLPAEACPQWP*HPAASCHSQPLHRC
Trigger: GCATCTATGAAGAGGTTGAGAGTGACATGATGCTGCTGGGTGCCACGGCCATTGAGGACAAGCTTCAGCAGGGAGTCCCAGAGACCATTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
3UTR TCA 90 bp GAGCCAGGACTATGCTTCCTTTCTGTTCTCCCAACAACCTCTTGCTaGCAGTTCATCCCTATCTGTAGCTTCTGCATCCCATCAGGACAC +
Preference number: 1 (lower is better)
Translates to: EPGLCFLSVLPTTSC*QFIPICSFCIPSGH
Trigger: GTGTCCTGATGGGATGCAGAAGCTACAGATAGGGATGAACTGTCAGCAAGAGGTTGTTGGGAGAACAGAAAGGAAGCATAGTCCTGGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR CCA 90 bp AGGGGTAGGAAGGAAGGGAAGTTGGAAGTGAGTACGCTAAGGAATTaGGGACTCAATTCAGAATCCAAAAACCCTATTTCCCGTCTCAGG +
Preference number: 1 (lower is better)
Translates to: RGRKEGKLEVSTLRN*GLNSESKNPISRLR
Trigger: CCTGAGACGGGAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCACTTCCAACTTCCCTTCCTTCCTACCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR TCA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCACAGACACCGGCCCTGTaGGCTCTGGTCCCTGACGCA +
Preference number: 2 (lower is better)
Translates to: LLLEAEPEDRALGYWAKAQTPAL*ALVPDA
Trigger: TGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTG...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR CCA 90 bp AAGCTTGTCCTCAATGGCCGTGGCACCCAGCAGCATCATGTCACTCTCAACCTCTGGGCCAGGCTAGCCTaGAGGCGTCTCCTGGCCCAC +
Preference number: 2 (lower is better)
Translates to: KLVLNGRGTQQHHVTLNLWARLA*RRLLAH
Trigger: GTGGGCCAGGAGACGCCTCCAGGCTAGCCTGGCCCA...GAGGTTGAGAGTGACATGATGCTGCTGGGTGCCACGGCCATTGAGGACAAGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
3UTR-3UTR GCA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCAGGGCATCCCAGTGTGTaGCAGTCTCCTCTTCCCAGG +
Preference number: 2 (lower is better)
Translates to: LLLEAEPEDRALGYWAKAGHPSV*QSPLPR
Trigger: CCTGGGAAGAGGAGACTGGCACACACTGGGATGCCC...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR CCA 90 bp TGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAACAAGGGCGCAAGGGCCGGCCCTGTGAGCTCTaGTCCCTGACGCAGGGGGTC +
Preference number: 2 (lower is better)
Translates to: WLPGVIHSCVIQEQGRKGRPCEL*SLTQGV
Trigger: GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCG...GCCCTTGCGCCCTTGTTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR CCA 90 bp CTTCTGCATCCCATCAGGACACTGGCACCCTTAAGTAGTTTGGTCCCTCCCAAGCGGCCCTGTGAGCTCTaGTCCCTGACGCAGGGGGTC +
Preference number: 2 (lower is better)
Translates to: LLHPIRTLAPLSSLVPPKRPCEL*SLTQGV
Trigger: GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCG...CTTGGGAGGGACCAAACTACTTAAGGGTGCCAGTGTCCTGATGGGATGCAGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR CCA 90 bp AGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAGCAACCGGCGCTGTCCCTaGGGTCTACTCCCTCTACCT +
Preference number: 2 (lower is better)
Translates to: SRTLEIQEPVCVPWGGHSNRRCP*GLLPLP
Trigger: AGGTAGAGGGAGTAGACCCCAGGGACAGCGCCGGTT...GCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR CCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTCGGCCCTGTGAGCTCTaGTCCCTGACGCAGGGGGTC +
Preference number: 2 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLRPCEL*SLTQGV
Trigger: GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCG...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
3UTR-3UTR GCA 90 bp TCTCTGGGACTCCCTGCTGAAGCTTGTCCTCAATGGCCGTGGCACCCAGCAGCACAACCTCTTCATAGATaGTGGCTAGCCTGTCCTCTC +
Preference number: 2 (lower is better)
Translates to: SLGLPAEACPQWPWHPAAQPLHR*WLACPL
Trigger: GAGAGGACAGGCTAGCCAGCATCTATGAAGAGGTTG...TGCTGCTGGGTGCCACGGCCATTGAGGACAAGCTTCAGCAGGGAGTCCCAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
3UTR-3UTR CCA 90 bp CTTCTGCATCCCATCAGGACACTGGCACCCTTAAGTAGTTTGGTCCCTCCCAAGAACCGGCGCTGTCCCTaGGGTCTACTCCCTCTACCT +
Preference number: 2 (lower is better)
Translates to: LLHPIRTLAPLSSLVPPKNRRCP*GLLPLP
Trigger: AGGTAGAGGGAGTAGACCCCAGGGACAGCGCCGGTT...CTTGGGAGGGACCAAACTACTTAAGGGTGCCAGTGTCCTGATGGGATGCAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR CCA 90 bp AAGCTTGTCCTCAATGGCCGTGGCACCCAGCAGCATCATGTCACTCTCAACCTCCCTGGAGGCGTCTCCTaGCCCACTCCTCATAGTACT +
Preference number: 2 (lower is better)
Translates to: KLVLNGRGTQQHHVTLNLPGGVS*PTPHST
Trigger: AGTACTATGAGGAGTGGGCCAGGAGACGCCTCCAGG...GAGGTTGAGAGTGACATGATGCTGCTGGGTGCCACGGCCATTGAGGACAAGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
3UTR-3UTR TCA 90 bp AGAGTTAAGACACTAACCACAACACAAAGTCACACGAAGGCCTCCTCCACTTACCAGACACCGGCCCTGTaGGCTCTGGTCCCTGACGCA +
Preference number: 2 (lower is better)
Translates to: RVKTLTTTQSHTKASSTYQTPAL*ALVPDA
Trigger: TGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTG...GTAAGTGGAGGAGGCCTTCGTGTGACTTTGTGTTGTGGTTAGTGTCTTAACTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR TCA 90 bp AAGTTGGAAGTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACGTGAGCTCTGGTCCCTaGCGCAGGGGGTCCCAGCCC +
Preference number: 2 (lower is better)
Translates to: KLEVSTLRNWGLNSESKNVSSGP*RRGSQP
Trigger: GGGCTGGGACCCCCTGCGTCAGGGACCAGAGCTCAC...GTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCACTTCCAACTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR CCA 90 bp TGTGTCCACCAGTCCCAGCTCCACGCCAGTCTTCCTCCTTACTCTGCTGCTAGCAGGAAGAGATTCCTCTaGAAGCGACAGGTAACAACA +
Preference number: 2 (lower is better)
Translates to: CVHQSQLHASLPPYSAASRKRFL*KRQVTT
Trigger: TGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCT...GCTAGCAGCAGAGTAAGGAGGAAGACTGGCGTGGAGCTGGGACTGGTGGACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR CCA 90 bp CTTCCTCCTTACTCTGCTGCTAGCAAACAAGAGGAAGAGATTCCTCTGGAAGCGATTATAGTCTCCCTGTaGACTCCAAGCAGGACAGGG +
Preference number: 2 (lower is better)
Translates to: LPPYSAASKQEEEIPLEAIIVSL*TPSRTG
Trigger: CCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAAT...CGCTTCCAGAGGAATCTCTTCCTCTTGTTTGCTAGCAGCAGAGTAAGGAGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR GCA 90 bp GTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACCCTATTTCCAAGAACCCGTATGTGTaGCCTGGGGAGGCCACAGCA +
Preference number: 2 (lower is better)
Translates to: VSTLRNWGLNSESKNPISKNPYV*PGEATA
Trigger: TGCTGTGGCCTCCCCAGGGCACACATACGGGTTCTT...GGAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR CCA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGCCTGACTTGGAGAGCTaGGCTGTGAAAGGGGTCCAA +
Preference number: 2 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMPDLES*AVKGVQ
Trigger: TTGGACCCCTTTCACAGCCCAGCTCTCCAAGTCAGG...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR CCA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTCTTGTCCCTCACTGTaGCCCCATCCAAGGCTTGAA +
Preference number: 2 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMSCPSL*PHPRLE
Trigger: TTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGA...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR TCA 72 bp GCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTaGGCTCTGGTCCCTGACGCAGGGGGTCCCAGCCCA +
Preference number: 3 (lower is better)
Translates to: AWRTSSFQTPAL*ALVPDAGGPSP
Trigger: TGGGCTGGGACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
3UTR GCA 72 bp GACTTGGAGAGCTGGGCTGTGAAAGGGGTCCAAAGATaGTCTGTCCAGACCGGGCAAGTGGTCTCCGGGCGA +
Preference number: 3 (lower is better)
Translates to: DLESWAVKGVQR*SVQTGQVVSGR
Trigger: TCGCCCGGAGACCACTTGCCCGGTCTGGACAGAGCATCTTTGGACCCCTTTCACAGCCCAGCTCTCCAAGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR TCA 72 bp AGAGTCAAGAGGGCAATGGTCTCTGGGACTCCCTGCTaGAGCTTGTCCTCAATGGCCGTGGCACCCAGCAGC +
Preference number: 3 (lower is better)
Translates to: RVKRAMVSGTPC*SLSSMAVAPSS
Trigger: GCTGCTGGGTGCCACGGCCATTGAGGACAAGCTTCAGCAGGGAGTCCCAGAGACCATTGCCCTCTTGACTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
3UTR CCA 72 bp CTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTaGGCCAAAGCAGCAGAGGTCAGCTTCCCTTTTCAG +
Preference number: 3 (lower is better)
Translates to: LEAEPEDRALGY*AKAAEVSFPFQ
Trigger: CTGAAAAGGGAAGCTGACCTCTGCTGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR CCA 72 bp GCAGCATCATGTCACTCTCAACCTCTTCATAGATGCTaGCTAGCCTGTCCTCTCGGCTGTCTTGGGCCAGGC +
Preference number: 3 (lower is better)
Translates to: AASCHSQPLHRC*LACPLGCLGPG
Trigger: GCCTGGCCCAAGACAGCCGAGAGGACAGGCTAGCCAGCATCTATGAAGAGGTTGAGAGTGACATGATGCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
3UTR CCA 72 bp CTGGGACTCCCTGCTGAAGCTTGTCCTCAATGGCCGTaGCACCCAGCAGCATCATGTCACTCTCAACCTCTT +
Preference number: 3 (lower is better)
Translates to: LGLPAEACPQWP*HPAASCHSQPL
Trigger: AAGAGGTTGAGAGTGACATGATGCTGCTGGGTGCCACGGCCATTGAGGACAAGCTTCAGCAGGGAGTCCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
3UTR GCA 72 bp CCAGCAGCATCATGTCACTCTCAACCTCTTCATAGATaGTGGCTAGCCTGTCCTCTCGGCTGTCTTGGGCCA +
Preference number: 3 (lower is better)
Translates to: PAASCHSQPLHR*WLACPLGCLGP
Trigger: TGGCCCAAGACAGCCGAGAGGACAGGCTAGCCAGCATCTATGAAGAGGTTGAGAGTGACATGATGCTGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
3UTR CCA 72 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTaGCCCCATCCAAGGCTTGAACCGGCGCTGTCCCTG +
Preference number: 3 (lower is better)
Translates to: SCVFGSTSCPSL*PHPRLEPALSL
Trigger: CAGGGACAGCGCCGGTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
3UTR CCA 72 bp CACTATCTGGGCTCTAGTCCAGCACTAGCAGGACTTTaGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAG +
Preference number: 3 (lower is better)
Translates to: HYLGSSPALAGL*RSKNPYVCPGE
Trigger: CTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCTAGTGCTGGACTAGAGCCCAGATAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR TCA 72 bp AAGCTCAATATGTACCTGACTTGGAGAGCTGGGCTGTaGAAGGGGTCCAAAGATGCTCTGTCCAGACCGGGC +
Preference number: 3 (lower is better)
Translates to: KLNMYLTWRAGL*KGSKDALSRPG
Trigger: GCCCGGTCTGGACAGAGCATCTTTGGACCCCTTTCACAGCCCAGCTCTCCAAGTCAGGTACATATTGAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR CAA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCACGGCGTGATACATTCTaGTGTAATTCAGGAACAAGG +
Preference number: 3 (lower is better)
Translates to: LLLEAEPEDRALGYWAKARRDTF*CNSGTR
Trigger: CCTTGTTCCTGAATTACACAAGAATGTATCACGCCG...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR TCA 72 bp TGGAAGCGACAGGTAACAACAAGCTCAATATGTACCTaGCTTGGAGAGCTGGGCTGTGAAAGGGGTCCAAAG +
Preference number: 3 (lower is better)
Translates to: WKRQVTTSSICT*LGELGCERGPK
Trigger: CTTTGGACCCCTTTCACAGCCCAGCTCTCCAAGTCAGGTACATATTGAGCTTGTTGTTACCTGTCGCTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR-3UTR CAA 90 bp GTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACCCTATTTCCCGGCGTGATACATTCTaGTGTAATTCAGGAACAAGG +
Preference number: 3 (lower is better)
Translates to: VSTLRNWGLNSESKNPISRRDTF*CNSGTR
Trigger: CCTTGTTCCTGAATTACACAAGAATGTATCACGCCG...GGAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR CCA 72 bp AAGGAAGGGAAGTTGGAAGTGAGTACGCTAAGGAATTaGGGACTCAATTCAGAATCCAAAAACCCTATTTCC +
Preference number: 3 (lower is better)
Translates to: KEGKLEVSTLRN*GLNSESKNPIS
Trigger: GGAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCACTTCCAACTTCCCTTCCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCAGCGCCGAGAGCCTGTaGGGCCCACTCGCCGCATGC +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPSAESL*GPLAAC
Trigger: GCATGCGGCGAGTGGGCCGCACAGGCTCTCGGCGCT...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCAGCTGGAGCGCGTGCTaGAGCTGGAGAGGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVSWSAC*SWRGPG
Trigger: CCCTGGCCCTCTCCAGCTTCAGCACGCGCTCCAGCT...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCAGCGCCGAGAGCCTGTaGGGCCCACTCGCCGCATGC +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELSAESL*GPLAAC
Trigger: GCATGCGGCGAGTGGGCCGCACAGGCTCTCGGCGCT...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp TTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGGAGAGCGCCGAGAGCCTGTaGGGCCCACTCGCCGCATGC +
Preference number: 4 (lower is better)
Translates to: FLRRLSIQLELERVLKLESAESL*GPLAAC
Trigger: GCATGCGGCGAGTGGGCCGCACAGGCTCTCGGCGCT...CTCCAGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR GCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCGGCCCACTCGCCGCATaGAGCGGTGCTGCGCCTTCT +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELGPLAA*SGAAPS
Trigger: AGAAGGCGCAGCACCGCTGCATGCGGCGAGTGGGCC...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGGGCCAGGCTAGCCTaGAGGCGTCTCCTGGCCCAC +
Preference number: 4 (lower is better)
Translates to: GCMEDQQFPDTGPVSSGPWARLA*RRLLAH
Trigger: GTGGGCCAGGAGACGCCTCCAGGCTAGCCTGGCCCA...GGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCACCTGGCCAGCTGACTaGCGTCTCCCAGCTCTGAGG +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPTWPAD*RLPALR
Trigger: CCTCAGAGCTGGGAGACGTCAGTCAGCTGGCCAGGT...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCGCATGGGCCAGGCTGTaGCCGTTGATGACCAAGGCG +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPAWARL*PLMTKA
Trigger: CGCCTTGGTCATCAACGGGCACAGCCTGGCCCATGC...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp TTCTTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGGGCCCACTCGCCGCATaGAGCGGTGCTGCGCCTTCT +
Preference number: 4 (lower is better)
Translates to: FFLRRLSIQLELERVLKLGPLAA*SGAAPS
Trigger: AGAAGGCGCAGCACCGCTGCATGCGGCGAGTGGGCC...CAGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAAGAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR GCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGGCCCACTCGCCGCATaGAGCGGTGCTGCGCCTTCT +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPGPLAA*SGAAPS
Trigger: AGAAGGCGCAGCACCGCTGCATGCGGCGAGTGGGCC...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCGCCTGGATCCCTTCCTaGCCACTGATGCCCACACCA +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPAWIPS*PLMPTP
Trigger: TGGTGTGGGCATCAGTGGGCAGGAAGGGATCCAGGC...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCCGCCGCATGCAGCGGTaGTGCGCCTTCTGCTTCTTC +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELRRMQR*CAFCFF
Trigger: GAAGAAGCAGAAGGCGCAGCACCGCTGCATGCGGCG...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCTCTCAGCTCCGCCACTaGGGCTGTTGGCACTGTCAC +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVSQLRH*GCWHCH
Trigger: GTGACAGTGCCAACAGCCCCAGTGGCGGAGCTGAGA...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCGACGTCTCCCAGCTCTaGGGTGACTGGAATGGCCTG +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELDVSQL*GDWNGL
Trigger: CAGGCCATTCCAGTCACCTCAGAGCTGGGAGACGTC...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp TGTGTCCACCAGTCCCAGCTCCACGCCAGTCTTCCTCCTTACTCTGCTGCTAGCAGCTGGAGCGCGTGCTaGAGCTGGAGAGGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: CVHQSQLHASLPPYSAASSWSAC*SWRGPG
Trigger: CCCTGGCCCTCTCCAGCTTCAGCACGCGCTCCAGCT...GCTAGCAGCAGAGTAAGGAGGAAGACTGGCGTGGAGCTGGGACTGGTGGACACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp ACTAGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACGCTCCAAGAGGGAGGTaGCCCGGCCCGGGCCCACTT +
Preference number: 4 (lower is better)
Translates to: TSRTLEIQEPVCVPWGGHAPRGR*PGPGPL
Trigger: AAGTGGGCCCGGGCCGGGGCACCTCCCTCTTGGAGC...GTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCTAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069805.14
CDS-3UTR GCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCCGCGTCCCAACTTCGTaGTCCCAGATGGCATTACCG +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPRVPTS*SQMALP
Trigger: CGGTAATGCCATCTGGGAGCACGAAGTTGGGACGCG...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGCCTGGATCCCTTCCTaGCCACTGATGCCCACACCA +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCAWIPS*PLMPTP
Trigger: TGGTGTGGGCATCAGTGGGCAGGAAGGGATCCAGGC...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCAGGCCCACTCGCCGCATaGAGCGGTGCTGCGCCTTCT +
Preference number: 4 (lower is better)
Translates to: LLLEAEPEDRALGYWAKAGPLAA*SGAAPS
Trigger: AGAAGGCGCAGCACCGCTGCATGCGGCGAGTGGGCC...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGCGTGGGGTTCGCTGCTaGAAAGGAGGAGGAGGTCCG +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPRGVRC*KGGGGP
Trigger: CGGACCTCCTCCTCCTTTCCAGCAGCGAACCCCACG...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCGAAGCTTGTCCTCAATaGCCGTGGCACCCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVEACPQ*PWHPAA
Trigger: TGCTGCTGGGTGCCACGGCCATTGAGGACAAGCTTC...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAAGCCAGGACAGCCTaGATCCCTTCCTGCCCACTG +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCEARTA*IPSCPL
Trigger: CAGTGGGCAGGAAGGGATCCAGGCTGTCCTGGCTTC...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGGCCAGGGTGTTCTaGGCATTCCCCACAAACCGG +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELWARVF*AFPTNR
Trigger: CCGGTTTGTGGGGAATGCCCAGAACACCCTGGCCCA...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTCTCAGCTCCGCCACTaGGGCTGTTGGCACTGTCAC +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELSQLRH*GCWHCH
Trigger: GTGACAGTGCCAACAGCCCCAGTGGCGGAGCTGAGA...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTCCAGCAGCTGGTAGGTaGTGGCTGTACCGAGCTCAT +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCPAAGR*WLYRAH
Trigger: ATGAGCTCGGTACAGCCATCACCTACCAGCTGCTGG...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCCGCGTCCCAACTTCGTaGTCCCAGATGGCATTACCG +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELRVPTS*SQMALP
Trigger: CGGTAATGCCATCTGGGAGCACGAAGTTGGGACGCG...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCCAGTTCCACCACTTGTaGCTTCTGCAGGGGTGTCAC +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVQFHHL*LLQGCH
Trigger: GTGACACCCCTGCAGAAGGCACAAGTGGTGGAACTG...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTCGGTGCTGCGCCTTCTaGTTCTTCCTTACCAGCTGG +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCRCCAF*FFLTSW
Trigger: CCAGCTGGTAAGGAAGAAGCAGAAGGCGCAGCACCG...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp TTTCTTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTCGCCGCATGCAGCGGTaGTGCGCCTTCTGCTTCTTC +
Preference number: 4 (lower is better)
Translates to: FLPAQALDPAGAGARAEARRMQR*CAFCFF
Trigger: GAAGAAGCAGAAGGCGCAGCACCGCTGCATGCGGCG...AGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAAGAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR CCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCCTTCGTGCTCCCAGATaGCATTACCGATGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPLRAPR*HYRWPG
Trigger: TCCTGGCCATCGGTAATGCCATCTGGGAGCACGAAG...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGGAGTGCCATCATCCCGAGTaGCCTCCGCAAACACCCCAT +
Preference number: 4 (lower is better)
Translates to: FLRRLSIQLELERVLKLECHHPE*PPQTPH
Trigger: ATGGGGTGTTTGCGGAGGCCACTCGGGATGATGGCA...CTCCAGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR CCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGTGGGCCAGGGTGTTCTaGGCATTCCCCACAAACCGG +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPWARVF*AFPTNR
Trigger: CCGGTTTGTGGGGAATGCCCAGAACACCCTGGCCCA...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TGTGTCCACCAGTCCCAGCTCCACGCCAGTCTTCCTCCTTACTCTGCTGCTAGCAGCCACACGGTGGGCTaGGCCAGGGTGTTCTGGGCA +
Preference number: 4 (lower is better)
Translates to: CVHQSQLHASLPPYSAASSHTVG*ARVFWA
Trigger: TGCCCAGAACACCCTGGCCCAGCCCACCGTGTGGCT...GCTAGCAGCAGAGTAAGGAGGAAGACTGGCGTGGAGCTGGGACTGGTGGACACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGCAGGACCTGCAAAGATaGCCAGCCCGAAGCACCACT +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPQDLQR*PARSTT
Trigger: AGTGGTGCTTCGGGCTGGTCATCTTTGCAGGTCCTG...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGTCTGGGACTCCCTGCTaGAGCTTGTCCTCAATGGCC +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPSGTPC*SLSSMA
Trigger: GGCCATTGAGGACAAGCTTCAGCAGGGAGTCCCAGA...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTCACTCGACAGCAGATaGCAGCTTTGCAGGCACATG +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPSLDSR*QLCRHM
Trigger: CATGTGCCTGCAAAGCTGTCATCTGCTGTCGAGTGA...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCTCACTCGACAGCAGATaGCAGCTTTGCAGGCACATG +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVSLDSR*QLCRHM
Trigger: CATGTGCCTGCAAAGCTGTCATCTGCTGTCGAGTGA...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTCAGTTCCACCACTTGTaGCTTCTGCAGGGGTGTCAC +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCQFHHL*LLQGCH
Trigger: GTGACACCCCTGCAGAAGGCACAAGTGGTGGAACTG...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp AGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAGCCGCCGCATGCAGCGGTaGTGCGCCTTCTGCTTCTTC +
Preference number: 4 (lower is better)
Translates to: SRTLEIQEPVCVPWGGHSRRMQR*CAFCFF
Trigger: GAAGAAGCAGAAGGCGCAGCACCGCTGCATGCGGCG...GCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCACGCCGCATGCAGCGGTaGTGCGCCTTCTGCTTCTTC +
Preference number: 4 (lower is better)
Translates to: LLLEAEPEDRALGYWAKARRMQR*CAFCFF
Trigger: GAAGAAGCAGAAGGCGCAGCACCGCTGCATGCGGCG...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTCACTTTTCTTCCTaGGCAGGCTCTCGATCCAGC +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPCHFSS*AGSRSS
Trigger: GCTGGATCGAGAGCCTGCGCAGGAAGAAAAGTGACA...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCGGCGCACTTTCATGTTaGTCTCTCCATCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVGALSC*SLHPAL
Trigger: CAGAGCTGGATGGAGAGACCAACATGAAAGTGCGCC...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCAGATGGCATTACCGATaGCCAGGATCACCCCCATGC +
Preference number: 4 (lower is better)
Translates to: GCMEDQQFPDTGPVSSGPRWHYR*PGSPPC
Trigger: GCATGGGGGTGATCCTGGCCATCGGTAATGCCATCT...GGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTCCTGGGTAGGAGGGTaGAGCCTGTCTAGCAGGATT +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELSWVGG*SLSSRI
Trigger: AATCCTGCTAGACAGGCTCCACCCTCCTACCCAGGA...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTTGTCCTCAATGGCCGTaGCACCCAGCAGCATCATGT +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCCPQWP*HPAASC
Trigger: ACATGATGCTGCTGGGTGCCACGGCCATTGAGGACA...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCACCTCCAGGACAGTGTaGCCTGTGACTACAAACACC +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPTSRTV*PVTTNT
Trigger: GGTGTTTGTAGTCACAGGCCACACTGTCCTGGAGGT...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp ACTAGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAGCCACACGGTGGGCTaGGCCAGGGTGTTCTGGGCA +
Preference number: 4 (lower is better)
Translates to: TSRTLEIQEPVCVPWGGHSHTVG*ARVFWA
Trigger: TGCCCAGAACACCCTGGCCCAGCCCACCGTGTGGCT...GTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCTAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTCACACTGACGTACAGTaGGATGGGCACAACGGTGTT +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCHTDVQ*DGHNGV
Trigger: AACACCGTTGTGCCCATCTCACTGTACGTCAGTGTG...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp AGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAGCAATTCCTGGCTGCGGTaGCCAGAGCGCCCTCATCTG +
Preference number: 4 (lower is better)
Translates to: SRTLEIQEPVCVPWGGHSNSWLR*PERPHL
Trigger: CAGATGAGGGCGCTCTGGTCACCGCAGCCAGGAATT...GCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCGCTTGCGAATGTTGTTaGAGTCCAAGATGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPACECC*SPRWPA
Trigger: TGCTGGCCATCTTGGACTTCAACAACATTCGCAAGC...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCGTCCTGCCGCTGTTCTaGATCAGCTTAGTATCAGGA +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVVLPLF*ISLVSG
Trigger: TCCTGATACTAAGCTGATGCAGAACAGCGGCAGGAC...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCCAACCTCTTCATAGATaGTGGCTAGCCTGTCCTCTC +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPQPLHR*WLACPL
Trigger: GAGAGGACAGGCTAGCCAGCATCTATGAAGAGGTTG...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCCAACCTCTTCATAGATaGTGGCTAGCCTGTCCTCTC +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVQPLHR*WLACPL
Trigger: GAGAGGACAGGCTAGCCAGCATCTATGAAGAGGTTG...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCACCAGCAGGAGGCGTTaGAGGAACTTGAACTGTGAA +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVTSRRR*RNLNCE
Trigger: TTCACAGTTCAAGTTCCTGCAACGCCTCCTGCTGGT...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCGTATCCAGCCCAATCTaGACACTGACCACAATGACC +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVVSSPI*TLTTMT
Trigger: GGTCATTGTGGTCAGTGTGCAGATTGGGCTGGATAC...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCGATGGCGAAGTACACTaGAAGGCTGCCCCAGATGAA +
Preference number: 4 (lower is better)
Translates to: GCMEDQQFPDTGPVSSGPDGEVH*KAAPDE
Trigger: TTCATCTGGGGCAGCCTTGCAGTGTACTTCGCCATC...GGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCAAGAGTCCATTGCTGTaGATGGCAAAGAGGATGGCG +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPKSPLL*MAKRMA
Trigger: CGCCATCCTCTTTGCCATGCACAGCAATGGACTCTT...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCAAGAGTCCATTGCTGTaGATGGCAAAGAGGATGGCG +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVKSPLL*MAKRMA
Trigger: CGCCATCCTCTTTGCCATGCACAGCAATGGACTCTT...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp TTTCTTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTCGGTGCTGCGCCTTCTaGTTCTTCCTTACCAGCTGG +
Preference number: 4 (lower is better)
Translates to: FLPAQALDPAGAGARAEARCCAF*FFLTSW
Trigger: CCAGCTGGTAAGGAAGAAGCAGAAGGCGCAGCACCG...AGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAAGAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR CCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCGACAGGGACGAGATCTaGGGGATTAACTGCAGAATG +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVDRDEI*GINCRM
Trigger: CATTCTGCAGTTAATCCCCCAGATCTCGTCCCTGTC...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCGAAGTCAACAGGCTCTaGTCTCTCTCCCAATTCAGC +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPEVNRL*SLSQFS
Trigger: GCTGAATTGGGAGAGAGACCAGAGCCTGTTGACTTC...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGAGGGCAATGGTCTCTaGGACTCCCTGCTGAAGCTT +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPEGNGL*DSLLKL
Trigger: AAGCTTCAGCAGGGAGTCCCAGAGACCATTGCCCTC...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCAGAAGCCAGGACAGCCTaGATCCCTTCCTGCCCACTG +
Preference number: 4 (lower is better)
Translates to: LLLEAEPEDRALGYWAKAEARTA*IPSCPL
Trigger: CAGTGGGCAGGAAGGGATCCAGGCTGTCCTGGCTTC...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCGTCCATTGCTGTGCATaGCAAAGAGGATGGCGAAGT +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVVHCCA*QRGWRS
Trigger: ACTTCGCCATCCTCTTTGCCATGCACAGCAATGGAC...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGCGCCACTGGGGCTGTTaGCACTGTCACTTTTCTTCC +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPRHWGC*HCHFSS
Trigger: GGAAGAAAAGTGACAGTGCCAACAGCCCCAGTGGCG...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp AGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAGCCAGGACCTGCAAAGATaGCCAGCCCGAAGCACCACT +
Preference number: 4 (lower is better)
Translates to: SRTLEIQEPVCVPWGGHSQDLQR*PARSTT
Trigger: AGTGGTGCTTCGGGCTGGTCATCTTTGCAGGTCCTG...GCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGTCTGACATGACAGTGTaGCACAAGGAGAGGAGACGG +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPSDMTV*HKERRR
Trigger: CCGTCTCCTCTCCTTGTGTCACACTGTCATGTCAGA...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp TGGGACTCCCTGCTGAAGCTTGTCCTCAATGGCCGTGGCACCCAGCAGCATCATCCAGCAGCTGGTAGGTaGTGGCTGTACCGAGCTCAT +
Preference number: 4 (lower is better)
Translates to: WDSLLKLVLNGRGTQQHHPAAGR*WLYRAH
Trigger: ATGAGCTCGGTACAGCCATCACCTACCAGCTGCTGG...ATGATGCTGCTGGGTGCCACGGCCATTGAGGACAAGCTTCAGCAGGGAGTCCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
CDS-3UTR TCA 90 bp AGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAGCTCTGGGACTCCCTGCTaGAGCTTGTCCTCAATGGCC +
Preference number: 4 (lower is better)
Translates to: SRTLEIQEPVCVPWGGHSSGTPC*SLSSMA
Trigger: GGCCATTGAGGACAAGCTTCAGCAGGGAGTCCCAGA...GCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCGACAGAAGTGAGCTTTaGAGAAGAAAGGTTCCCCTG +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVDRSEL*RRKVPL
Trigger: CAGGGGAACCTTTCTTCTTCAAAGCTCACTTCTGTC...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCGCAACTTCCTGGAACTaGTCAAAGAGGTTGACAGGC +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELATSWN*SKRLTG
Trigger: GCCTGTCAACCTCTTTGAGCAGTTCCAGGAAGTTGC...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTCCAGGATCACCCCCATaGAAACCAGGAACCCAAAAA +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCPGSPP*KPGTQK
Trigger: TTTTTGGGTTCCTGGTTTGCATGGGGGTGATCCTGG...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCCCAGGATCACCCCCATaGAAACCAGGAACCCAAAAA +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELPGSPP*KPGTQK
Trigger: TTTTTGGGTTCCTGGTTTGCATGGGGGTGATCCTGG...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCACCAGCAGGAGGCGTTaGAGGAACTTGAACTGTGAA +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELTSRRR*RNLNCE
Trigger: TTCACAGTTCAAGTTCCTGCAACGCCTCCTGCTGGT...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp TTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGGAGAAAGGACTGGTAGTCTaGCAGTTGGGTGCCATCATC +
Preference number: 4 (lower is better)
Translates to: FLRRLSIQLELERVLKLEKGLVV*QLGAII
Trigger: GATGATGGCACCCAACTGGCAGACTACCAGTCCTTT...CTCCAGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR GCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTAGCGCCGAGAGCCTGTaGGGCCCACTCGCCGCATGC +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLSAESL*GPLAAC
Trigger: GCATGCGGCGAGTGGGCCGCACAGGCTCTCGGCGCT...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCACAGGAAGTAGGTGTTaGCAACTTCCTGGAACTGCT +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVTGSRC*QLPGTA
Trigger: AGCAGTTCCAGGAAGTTGCCAACACCTACTTCCTGT...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTCAGCTTGTTGTTGGGTaGTTCGCAGATTACTTCGCC +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCQLVVG*FADYFA
Trigger: GGCGAAGTAATCTGCGAACCACCCAACAACAAGCTG...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGCTCAGCAGCATGTTCTaGTTGCTCAGGGGGAACTTG +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPLSSMF*LLRGNL
Trigger: CAAGTTCCCCCTGAGCAACCAGAACATGCTGCTGAG...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTAAGATGTACTCCACCTaGCCCAGCTCTTCGTTCAGA +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCKMYST*PSSSFR
Trigger: TCTGAACGAAGAGCTGGGCCAGGTGGAGTACATCTT...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCGAAGTCAACAGGCTCTaGTCTCTCTCCCAATTCAGC +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELEVNRL*SLSQFS
Trigger: GCTGAATTGGGAGAGAGACCAGAGCCTGTTGACTTC...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCCAGAGCGCCCTCATCTaGAGACTGAGCTTTGTAGTA +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELQSALI*RLSFVV
Trigger: TACTACAAAGCTCAGTCTCCAGATGAGGGCGCTCTG...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCCAGAGCGCCCTCATCTaGAGACTGAGCTTTGTAGTA +
Preference number: 4 (lower is better)
Translates to: GCMEDQQFPDTGPVSSGPQSALI*RLSFVV
Trigger: TACTACAAAGCTCAGTCTCCAGATGAGGGCGCTCTG...GGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCGCTGTACCGAGCTCATaGACAGTGATTGTTTTAGGG +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVAVPSS*TVIVLG
Trigger: CCCTAAAACAATCACTGTCCATGAGCTCGGTACAGC...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCGCATACTCATTCAGATaGTCAGTGGTGCTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: GCMEDQQFPDTGPVSSGPAYSFR*SVVLLS
Trigger: GCTCAGCAGCACCACTGACCATCTGAATGAGTATGC...GGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TGTGTCCACCAGTCCCAGCTCCACGCCAGTCTTCCTCCTTACTCTGCTGCTAGCTGCCATCATCCCGAGTaGCCTCCGCAAACACCCCAT +
Preference number: 4 (lower is better)
Translates to: CVHQSQLHASLPPYSAASCHHPE*PPQTPH
Trigger: ATGGGGTGTTTGCGGAGGCCACTCGGGATGATGGCA...GCTAGCAGCAGAGTAAGGAGGAAGACTGGCGTGGAGCTGGGACTGGTGGACACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp CTTCTGCATCCCATCAGGACACTGGCACCCTTAAGTAGTTTGGTCCCTCCCAAGACCTGGCCAGCTGACTaGCGTCTCCCAGCTCTGAGG +
Preference number: 4 (lower is better)
Translates to: LLHPIRTLAPLSSLVPPKTWPAD*RLPALR
Trigger: CCTCAGAGCTGGGAGACGTCAGTCAGCTGGCCAGGT...CTTGGGAGGGACCAAACTACTTAAGGGTGCCAGTGTCCTGATGGGATGCAGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCATGCCCACACCAATGTaGGCAGTTTTAATCATGCTG +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPMPTPM*AVLIML
Trigger: CAGCATGATTAAAACTGCTCACATTGGTGTGGGCAT...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTAGCTGGAGCGCGTGCTaGAGCTGGAGAGGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLSWSAC*SWRGPG
Trigger: CCCTGGCCCTCTCCAGCTTCAGCACGCGCTCCAGCT...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGCAGCATGTTCTGGTTaGTCAGGGGGAACTTGTTTT +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCAACSG*SGGTCF
Trigger: AAAACAAGTTCCCCCTGAGCAACCAGAACATGCTGC...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCGCAGCATGTTCTGGTTaGTCAGGGGGAACTTGTTTT +
Preference number: 4 (lower is better)
Translates to: GCMEDQQFPDTGPVSSGPAACSG*SGGTCF
Trigger: AAAACAAGTTCCCCCTGAGCAACCAGAACATGCTGC...GGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCCTTAGTATCAGGACCTaGAAAGATGACCAGCCCGAA +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELLSIRT*KDDQPE
Trigger: TTCGGGCTGGTCATCTTTGCAGGTCCTGATACTAAG...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGGGTCCGCTTCTTCATaGAGAACATCTTCTTGTCCC +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPGSASS*RTSSCP
Trigger: GGGACAAGAAGATGTTCTGCATGAAGAAGCGGACCC...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCTTCACAGCTGTCTCTTaGTTATCTCCTGTTAGCACC +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVFTAVS*LSPVST
Trigger: GGTGCTAACAGGAGATAAGCAAGAGACAGCTGTGAA...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp TTCTTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGGTATCCAGCCCAATCTaGACACTGACCACAATGACC +
Preference number: 4 (lower is better)
Translates to: FFLRRLSIQLELERVLKLVSSPI*TLTTMT
Trigger: GGTCATTGTGGTCAGTGTGCAGATTGGGCTGGATAC...CAGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR GCA 90 bp TTTCTTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGATGGCGAAGTACACTaGAAGGCTGCCCCAGATGAA +
Preference number: 4 (lower is better)
Translates to: FLPAQALDPAGAGARAEADGEVH*KAAPDE
Trigger: TTCATCTGGGGCAGCCTTGCAGTGTACTTCGCCATC...AGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAAGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR GCA 90 bp TTCTTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGAAGAGTCCATTGCTGTaGATGGCAAAGAGGATGGCG +
Preference number: 4 (lower is better)
Translates to: FFLRRLSIQLELERVLKLKSPLL*MAKRMA
Trigger: CGCCATCCTCTTTGCCATGCACAGCAATGGACTCTT...CAGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR GCA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCTGTCAAAGAGTCCATTaGTGTGCATGGCAAAGAGGA +
Preference number: 4 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVCQRVH*CAWQRG
Trigger: TCCTCTTTGCCATGCACAGCAATGGACTCTTTGACA...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCACAAGAAGGCTTCTTCTaGCTCCAAGAGGGAGGTGCC +
Preference number: 4 (lower is better)
Translates to: LLLEAEPEDRALGYWAKAQEGFF*LQEGGA
Trigger: GGCACCTCCCTCTTGGAGCCAGAAGAAGCCTTCTTG...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069805.14
CDS-3UTR CCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGAAGATGTACTCCACCTaGCCCAGCTCTTCGTTCAGA +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPKMYST*PSSSFR
Trigger: TCTGAACGAAGAGCTGGGCCAGGTGGAGTACATCTT...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCATGTCCTCAATGGCCGTaGCACCCAGCAGCATCATGT +
Preference number: 4 (lower is better)
Translates to: LLLEAEPEDRALGYWAKACPQWP*HPAASC
Trigger: ACATGATGCTGCTGGGTGCCACGGCCATTGAGGACA...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TTTCTTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGCATGGCAAAGAGGATaGCGAAGTACACTGCAAGGC +
Preference number: 4 (lower is better)
Translates to: FLPAQALDPAGAGARAEAAWQRG*RSTLQG
Trigger: GCCTTGCAGTGTACTTCGCCATCCTCTTTGCCATGC...AGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAAGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR CCA 90 bp TTCTTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGGTCCATTGCTGTGCATaGCAAAGAGGATGGCGAAGT +
Preference number: 4 (lower is better)
Translates to: FFLRRLSIQLELERVLKLVHCCA*QRGWRS
Trigger: ACTTCGCCATCCTCTTTGCCATGCACAGCAATGGAC...CAGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR CCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCAAACCGGAACTGGTTTaGGAACATGTCAAAGAGTCC +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPKPELV*EHVKES
Trigger: GGACTCTTTGACATGTTCCCAAACCAGTTCCGGTTT...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACAGCCACACGGTGGGCTaGGCCAGGGTGTTCTGGGCA +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNSHTVG*ARVFWA
Trigger: TGCCCAGAACACCCTGGCCCAGCCCACCGTGTGGCT...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
3UTR CAA 72 bp CCCAGCAGGTCTCTGGCTTCCCGGCGTGATACATTCTaGTGTAATTCAGGAACAAGGGCGCAAGGGCCCCTC +
Preference number: 4 (lower is better)
Translates to: PSRSLASRRDTF*CNSGTRAQGPL
Trigger: GAGGGGCCCTTGCGCCCTTGTTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCAGAGACCTGCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATCTCCCAGCTCTGAGGTaGCTGGAATGGCCTGGCGCA +
Preference number: 4 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNLPALR*LEWPGA
Trigger: TGCGCCAGGCCATTCCAGTCACCTCAGAGCTGGGAG...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACCTCCCAGCTCTGAGGTaGCTGGAATGGCCTGGCGCA +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNLPALR*LEWPGA
Trigger: TGCGCCAGGCCATTCCAGTCACCTCAGAGCTGGGAG...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp TGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAACAAGGGCGCAAGGGCGACGTCTCCCAGCTCTaGGGTGACTGGAATGGCCTG +
Preference number: 4 (lower is better)
Translates to: WLPGVIHSCVIQEQGRKGDVSQL*GDWNGL
Trigger: CAGGCCATTCCAGTCACCTCAGAGCTGGGAGACGTC...GCCCTTGCGCCCTTGTTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACACCTGGCCAGCTGACTaGCGTCTCCCAGCTCTGAGG +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNTWPAD*RLPALR
Trigger: CCTCAGAGCTGGGAGACGTCAGTCAGCTGGCCAGGT...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTAGTACAGAGTCCCACTaGATTTGTCCAGCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCSTESH*ICPACC
Trigger: ACAACAAGCTGGACAAATTCAGTGGGACTCTGTACT...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp TGTGTCCACCAGTCCCAGCTCCACGCCAGTCTTCCTCCTTACTCTGCTGCTAGCTCTGACATGACAGTGTaGCACAAGGAGAGGAGACGG +
Preference number: 4 (lower is better)
Translates to: CVHQSQLHASLPPYSAASSDMTV*HKERRR
Trigger: CCGTCTCCTCTCCTTGTGTCACACTGTCATGTCAGA...GCTAGCAGCAGAGTAAGGAGGAAGACTGGCGTGGAGCTGGGACTGGTGGACACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTCTTTTCTTCTGACATaGCAGTGTGACACAAGGAGA +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPSFLLT*QCDTRR
Trigger: TCTCCTTGTGTCACACTGTCATGTCAGAAGAAAAGA...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp TCTCTGGGACTCCCTGCTGAAGCTTGTCCTCAATGGCCGTGGCACCCAGCAGCAGCTTGCGAATGTTGTTaGAGTCCAAGATGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: SLGLPAEACPQWPWHPAAACECC*SPRWPA
Trigger: TGCTGGCCATCTTGGACTTCAACAACATTCGCAAGC...TGCTGCTGGGTGCCACGGCCATTGAGGACAAGCTTCAGCAGGGAGTCCCAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
CDS-3UTR TCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTTAGCACCCAAATCTTaGTGTTGGCCAGAGTCAAGA +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELLAPKS*CWPESR
Trigger: TCTTGACTCTGGCCAACATCAAGATTTGGGTGCTAA...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCATCACTCGACAGCAGATaGCAGCTTTGCAGGCACATG +
Preference number: 4 (lower is better)
Translates to: LLLEAEPEDRALGYWAKASLDSR*QLCRHM
Trigger: CATGTGCCTGCAAAGCTGTCATCTGCTGTCGAGTGA...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGTTGTGTCAGCCCCTTTaGAGTAGAGTCGTATCTTCC +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPLCQPL*SRVVSS
Trigger: GGAAGATACGACTCTACTGCAAAGGGGCTGACACAA...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTTTCACAGCTGTCTCTTaGTTATCTCCTGTTAGCACC +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCFTAVS*LSPVST
Trigger: GGTGCTAACAGGAGATAAGCAAGAGACAGCTGTGAA...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp TTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGGAGTGTCAAAGAGTCCATTaGTGTGCATGGCAAAGAGGA +
Preference number: 4 (lower is better)
Translates to: FLRRLSIQLELERVLKLECQRVH*CAWQRG
Trigger: TCCTCTTTGCCATGCACAGCAATGGACTCTTTGACA...CTCCAGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR GCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTTGTCAAAGAGTCCATTaGTGTGCATGGCAAAGAGGA +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCCQRVH*CAWQRG
Trigger: TCCTCTTTGCCATGCACAGCAATGGACTCTTTGACA...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTCCGCCGCCACAAACTaGTTATTTTCTAGCTTGATA +
Preference number: 4 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPSAATN*LFSSLI
Trigger: TATCAAGCTAGAAAATAACCAGTTTGTGGCGGCGGA...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATCGTGGGGTTCGCTGCTaGAAAGGAGGAGGAGGTCCG +
Preference number: 4 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNRGVRC*KGGGGP
Trigger: CGGACCTCCTCCTCCTTTCCAGCAGCGAACCCCACG...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCAGTGACTGGAATGGCCTaGCGCACTTTCATGTTGGTC +
Preference number: 4 (lower is better)
Translates to: LLLEAEPEDRALGYWAKAVTGMA*RTFMLV
Trigger: GACCAACATGAAAGTGCGCCAGGCCATTCCAGTCAC...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TGTGTCCACCAGTCCCAGCTCCACGCCAGTCTTCCTCCTTACTCTGCTGCTAGCGTGACTGGAATGGCCTaGCGCACTTTCATGTTGGTC +
Preference number: 4 (lower is better)
Translates to: CVHQSQLHASLPPYSAASVTGMA*RTFMLV
Trigger: GACCAACATGAAAGTGCGCCAGGCCATTCCAGTCAC...GCTAGCAGCAGAGTAAGGAGGAAGACTGGCGTGGAGCTGGGACTGGTGGACACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTTGTCCAGCTTGTTGTTaGGTGGTTCGCAGATTACTT +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCCPACC*VVRRLL
Trigger: AAGTAATCTGCGAACCACCCAACAACAAGCTGGACA...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGTCCAGCTTGTTGTTaGGTGGTTCGCAGATTACTT +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELCPACC*VVRRLL
Trigger: AAGTAATCTGCGAACCACCCAACAACAAGCTGGACA...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp ACTAGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACGAGGGCAATGGTCTCTaGGACTCCCTGCTGAAGCTT +
Preference number: 4 (lower is better)
Translates to: TSRTLEIQEPVCVPWGGHEGNGL*DSLLKL
Trigger: AAGCTTCAGCAGGGAGTCCCAGAGACCATTGCCCTC...GTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAGCGCATGGCAAAGAGGATaGCGAAGTACACTGCAAGGC +
Preference number: 4 (lower is better)
Translates to: SRTLEIQEPVCVPWGGHSAWQRG*RSTLQG
Trigger: GCCTTGCAGTGTACTTCGCCATCCTCTTTGCCATGC...GCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGGAGAAACCGGAACTGGTTTaGGAACATGTCAAAGAGTCC +
Preference number: 4 (lower is better)
Translates to: FLRRLSIQLELERVLKLEKPELV*EHVKES
Trigger: GGACTCTTTGACATGTTCCCAAACCAGTTCCGGTTT...CTCCAGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR CCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGCCCACAAACCGGAACTaGTTTGGGAACATGTCAAAG +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPPTNRN*FGNMSK
Trigger: CTTTGACATGTTCCCAAACCAGTTCCGGTTTGTGGG...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TTCTTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGCCCACAAACCGGAACTaGTTTGGGAACATGTCAAAG +
Preference number: 4 (lower is better)
Translates to: FFLRRLSIQLELERVLKLPTNRN*FGNMSK
Trigger: CTTTGACATGTTCCCAAACCAGTTCCGGTTTGTGGG...CAGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR TCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACGACGTCTCCCAGCTCTaGGGTGACTGGAATGGCCTG +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNDVSQL*GDWNGL
Trigger: CAGGCCATTCCAGTCACCTCAGAGCTGGGAGACGTC...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp TGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAACAAGGGCGCAAGGGCTCAAACCTGGCCAGCTaGCTGACGTCTCCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: WLPGVIHSCVIQEQGRKGSNLAS*LTSPSS
Trigger: AGAGCTGGGAGACGTCAGTCAGCTGGCCAGGTTTGA...GCCCTTGCGCCCTTGTTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp CTTCTGCATCCCATCAGGACACTGGCACCCTTAAGTAGTTTGGTCCCTCCCAAGTCAAACCTGGCCAGCTaGCTGACGTCTCCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: LLHPIRTLAPLSSLVPPKSNLAS*LTSPSS
Trigger: AGAGCTGGGAGACGTCAGTCAGCTGGCCAGGTTTGA...CTTGGGAGGGACCAAACTACTTAAGGGTGCCAGTGTCCTGATGGGATGCAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTTCTTTTCTTCTGACATaGCAGTGTGACACAAGGAGA +
Preference number: 4 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCSFLLT*QCDTRR
Trigger: TCTCCTTGTGTCACACTGTCATGTCAGAAGAAAAGA...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATAATTCCTGGCTGCGGTaGCCAGAGCGCCCTCATCTG +
Preference number: 4 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNNSWLR*PERPHL
Trigger: CAGATGAGGGCGCTCTGGTCACCGCAGCCAGGAATT...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp GCAGCATCATGTCACTCTCAACCTCTTCATAGATGCTGGCTAGCCTGTCCTCTCAATTCCTGGCTGCGGTaGCCAGAGCGCCCTCATCTG +
Preference number: 4 (lower is better)
Translates to: AASCHSQPLHRCWLACPLNSWLR*PERPHL
Trigger: CAGATGAGGGCGCTCTGGTCACCGCAGCCAGGAATT...GAGAGGACAGGCTAGCCAGCATCTATGAAGAGGTTGAGAGTGACATGATGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
CDS-3UTR TCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGATGCCCACACCAATGTaGGCAGTTTTAATCATGCTG +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPMPTPM*AVLIML
Trigger: CAGCATGATTAAAACTGCTCACATTGGTGTGGGCAT...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCAGCAACTTCCTGGAACTaGTCAAAGAGGTTGACAGGC +
Preference number: 4 (lower is better)
Translates to: LLLEAEPEDRALGYWAKAATSWN*SKRLTG
Trigger: GCCTGTCAACCTCTTTGAGCAGTTCCAGGAAGTTGC...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp AGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAGCCTCTCCATCCAGCTCTaGGGTCTCTATGTAACACAG +
Preference number: 4 (lower is better)
Translates to: SRTLEIQEPVCVPWGGHSLSIQL*GLYVTQ
Trigger: CTGTGTTACATAGAGACCGCAGAGCTGGATGGAGAG...GCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp AGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAGCGTCCTGCCGCTGTTCTaGATCAGCTTAGTATCAGGA +
Preference number: 4 (lower is better)
Translates to: SRTLEIQEPVCVPWGGHSVLPLF*ISLVSG
Trigger: TCCTGATACTAAGCTGATGCAGAACAGCGGCAGGAC...GCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCACCAGGATCACCCCCATaGAAACCAGGAACCCAAAAA +
Preference number: 4 (lower is better)
Translates to: LLLEAEPEDRALGYWAKAPGSPP*KPGTQK
Trigger: TTTTTGGGTTCCTGGTTTGCATGGGGGTGATCCTGG...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp TGTGTCCACCAGTCCCAGCTCCACGCCAGTCTTCCTCCTTACTCTGCTGCTAGCAAAGGACTGGTAGTCTaGCAGTTGGGTGCCATCATC +
Preference number: 4 (lower is better)
Translates to: CVHQSQLHASLPPYSAASKGLVV*QLGAII
Trigger: GATGATGGCACCCAACTGGCAGACTACCAGTCCTTT...GCTAGCAGCAGAGTAAGGAGGAAGACTGGCGTGGAGCTGGGACTGGTGGACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp TGTGTCCACCAGTCCCAGCTCCACGCCAGTCTTCCTCCTTACTCTGCTGCTAGCGTATCCAGCCCAATCTaGACACTGACCACAATGACC +
Preference number: 4 (lower is better)
Translates to: CVHQSQLHASLPPYSAASVSSPI*TLTTMT
Trigger: GGTCATTGTGGTCAGTGTGCAGATTGGGCTGGATAC...GCTAGCAGCAGAGTAAGGAGGAAGACTGGCGTGGAGCTGGGACTGGTGGACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCAAAGAGTCCATTGCTGTaGATGGCAAAGAGGATGGCG +
Preference number: 4 (lower is better)
Translates to: LLLEAEPEDRALGYWAKAKSPLL*MAKRMA
Trigger: CGCCATCCTCTTTGCCATGCACAGCAATGGACTCTT...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCAAGGAAAAGTCAAAGCTaGCAGTCTCAGCTCCTCTCG +
Preference number: 4 (lower is better)
Translates to: LLLEAEPEDRALGYWAKARKSQS*QSQLLS
Trigger: CGAGAGGAGCTGAGACTGGCAGCTTTGACTTTTCCT...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp CTTCCTCCTTACTCTGCTGCTAGCAAACAAGAGGAAGAGATTCCTCTGGAAGCGCTGCTGAGCAGCTCCTaGGTAGGAGGGTGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: LPPYSAASKQEEEIPLEALLSSS*VGGWSL
Trigger: CAGGCTCCACCCTCCTACCCAGGAGCTGCTCAGCAG...CGCTTCCAGAGGAATCTCTTCCTCTTGTTTGCTAGCAGCAGAGTAAGGAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTCTGCTGAGCAGCTCCTaGGTAGGAGGGTGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLLLSSS*VGGWSL
Trigger: CAGGCTCCACCCTCCTACCCAGGAGCTGCTCAGCAG...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp AGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAGCGCATACTCATTCAGATaGTCAGTGGTGCTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: SRTLEIQEPVCVPWGGHSAYSFR*SVVLLS
Trigger: GCTCAGCAGCACCACTGACCATCTGAATGAGTATGC...GCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAGCGTCCATTGCTGTGCATaGCAAAGAGGATGGCGAAGT +
Preference number: 4 (lower is better)
Translates to: SRTLEIQEPVCVPWGGHSVHCCA*QRGWRS
Trigger: ACTTCGCCATCCTCTTTGCCATGCACAGCAATGGAC...GCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGAAACCGGAACTGGTTTaGGAACATGTCAAAGAGTCC +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPKPELV*EHVKES
Trigger: GGACTCTTTGACATGTTCCCAAACCAGTTCCGGTTT...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACTGGGCCAGGGTGTTCTaGGCATTCCCCACAAACCGG +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNWARVF*AFPTNR
Trigger: CCGGTTTGTGGGGAATGCCCAGAACACCCTGGCCCA...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
3UTR CAA 72 bp CTGCATCCCATCAGGACACTGGCACCCTTAAGTAGTTaGGTCCCTCCCAAGCTACTCCACCAGGTAGGGCAT +
Preference number: 4 (lower is better)
Translates to: LHPIRTLAPLSS*VPPKLLHQVGH
Trigger: ATGCCCTACCTGGTGGAGTAGCTTGGGAGGGACCAAACTACTTAAGGGTGCCAGTGTCCTGATGGGATGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACCAGGACCTGCAAAGATaGCCAGCCCGAAGCACCACT +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNQDLQR*PARSTT
Trigger: AGTGGTGCTTCGGGCTGGTCATCTTTGCAGGTCCTG...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATCCAGCAGCTGGTAGGTaGTGGCTGTACCGAGCTCAT +
Preference number: 4 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNPAAGR*WLYRAH
Trigger: ATGAGCTCGGTACAGCCATCACCTACCAGCTGCTGG...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATTCTGGGACTCCCTGCTaGAGCTTGTCCTCAATGGCC +
Preference number: 4 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNSGTPC*SLSSMA
Trigger: GGCCATTGAGGACAAGCTTCAGCAGGGAGTCCCAGA...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATCGCGTCCCAACTTCGTaGTCCCAGATGGCATTACCG +
Preference number: 4 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNRVPTS*SQMALP
Trigger: CGGTAATGCCATCTGGGAGCACGAAGTTGGGACGCG...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACAGACGGAAGAACTCGTaGGTGTGTGGGTCCCCCATC +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNRRKNS*VCGSPI
Trigger: GATGGGGGACCCACACACGCACGAGTTCTTCCGTCT...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GCCCCAGCAGGTCTCTGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAAAGATGGCATTACCGATaGCCAGGATCACCCCCATGC +
Preference number: 4 (lower is better)
Translates to: APAGLWLPGVIHSCVIQERWHYR*PGSPPC
Trigger: GCATGGGGGTGATCCTGGCCATCGGTAATGCCATCT...TTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCAGAGACCTGCTGGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp ACTAGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAAGATGTACTCCACCTaGCCCAGCTCTTCGTTCAGA +
Preference number: 4 (lower is better)
Translates to: TSRTLEIQEPVCVPWGGHKMYST*PSSSFR
Trigger: TCTGAACGAAGAGCTGGGCCAGGTGGAGTACATCTT...GTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TGGGACTCCCTGCTGAAGCTTGTCCTCAATGGCCGTGGCACCCAGCAGCATCATGCTGTACCGAGCTCATaGACAGTGATTGTTTTAGGG +
Preference number: 4 (lower is better)
Translates to: WDSLLKLVLNGRGTQQHHAVPSS*TVIVLG
Trigger: CCCTAAAACAATCACTGTCCATGAGCTCGGTACAGC...ATGATGCTGCTGGGTGCCACGGCCATTGAGGACAAGCTTCAGCAGGGAGTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
CDS-3UTR CCA 90 bp TGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAACAAGGGCGCAAGGGCTCCTGGGTAGGAGGGTaGAGCCTGTCTAGCAGGATT +
Preference number: 4 (lower is better)
Translates to: WLPGVIHSCVIQEQGRKGSWVGG*SLSSRI
Trigger: AATCCTGCTAGACAGGCTCCACCCTCCTACCCAGGA...GCCCTTGCGCCCTTGTTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACCCTGGAGGCGTCTCCTaGCCCACTCCTCATAGTACT +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNPGGVS*PTPHST
Trigger: AGTACTATGAGGAGTGGGCCAGGAGACGCCTCCAGG...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTTCTCAGCTCCGCCACTaGGGCTGTTGGCACTGTCAC +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLSQLRH*GCWHCH
Trigger: GTGACAGTGCCAACAGCCCCAGTGGCGGAGCTGAGA...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTTCAAACCTGGCCAGCTaGCTGACGTCTCCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLSNLAS*LTSPSS
Trigger: AGAGCTGGGAGACGTCAGTCAGCTGGCCAGGTTTGA...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp CTTCTGCATCCCATCAGGACACTGGCACCCTTAAGTAGTTTGGTCCCTCCCAAGCACACTGACGTACAGTaGGATGGGCACAACGGTGTT +
Preference number: 4 (lower is better)
Translates to: LLHPIRTLAPLSSLVPPKHTDVQ*DGHNGV
Trigger: AACACCGTTGTGCCCATCTCACTGTACGTCAGTGTG...CTTGGGAGGGACCAAACTACTTAAGGGTGCCAGTGTCCTGATGGGATGCAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp CTTCCTCCTTACTCTGCTGCTAGCAAACAAGAGGAAGAGATTCCTCTGGAAGCGAGACGGAAGAACTCGTaGGTGTGTGGGTCCCCCATC +
Preference number: 4 (lower is better)
Translates to: LPPYSAASKQEEEIPLEARRKNS*VCGSPI
Trigger: GATGGGGGACCCACACACGCACGAGTTCTTCCGTCT...CGCTTCCAGAGGAATCTCTTCCTCTTGTTTGCTAGCAGCAGAGTAAGGAGGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AGAGTTAAGACACTAACCACAACACAAAGTCACACGAAGGCCTCCTCCACTTACCGTGGGGTTCGCTGCTaGAAAGGAGGAGGAGGTCCG +
Preference number: 4 (lower is better)
Translates to: RVKTLTTTQSHTKASSTYRGVRC*KGGGGP
Trigger: CGGACCTCCTCCTCCTTTCCAGCAGCGAACCCCACG...GTAAGTGGAGGAGGCCTTCGTGTGACTTTGTGTTGTGGTTAGTGTCTTAACTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAGCTGTCCAGCTTGTTGTTaGGTGGTTCGCAGATTACTT +
Preference number: 4 (lower is better)
Translates to: SRTLEIQEPVCVPWGGHSCPACC*VVRRLL
Trigger: AAGTAATCTGCGAACCACCCAACAACAAGCTGGACA...GCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATCTTCGTGCTCCCAGATaGCATTACCGATGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNLRAPR*HYRWPG
Trigger: TCCTGGCCATCGGTAATGCCATCTGGGAGCACGAAG...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGTTTCTTGTCAGCCAGTaGATTAAAGGAGAAGTCAAC +
Preference number: 4 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPFLVSQ*IKGEVN
Trigger: GTTGACTTCTCCTTTAATCCACTGGCTGACAAGAAA...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CTTCCTCCTTACTCTGCTGCTAGCAAACAAGAGGAAGAGATTCCTCTGGAAGCGCCTGGAGGCGTCTCCTaGCCCACTCCTCATAGTACT +
Preference number: 4 (lower is better)
Translates to: LPPYSAASKQEEEIPLEAPGGVS*PTPHST
Trigger: AGTACTATGAGGAGTGGGCCAGGAGACGCCTCCAGG...CGCTTCCAGAGGAATCTCTTCCTCTTGTTTGCTAGCAGCAGAGTAAGGAGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTGGGCCAGGCTAGCCTaGAGGCGTCTCCTGGCCCAC +
Preference number: 4 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMWARLA*RRLLAH
Trigger: GTGGGCCAGGAGACGCCTCCAGGCTAGCCTGGCCCA...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAAGCTTGTCCTCAATaGCCGTGGCACCCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLEACPQ*PWHPAA
Trigger: TGCTGCTGGGTGCCACGGCCATTGAGGACAAGCTTC...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACGAGGGCAATGGTCTCTaGGACTCCCTGCTGAAGCTT +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNEGNGL*DSLLKL
Trigger: AAGCTTCAGCAGGGAGTCCCAGAGACCATTGCCCTC...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTTGCCATCATCCCGAGTaGCCTCCGCAAACACCCCAT +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLCHHPE*PPQTPH
Trigger: ATGGGGTGTTTGCGGAGGCCACTCGGGATGATGGCA...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACGGACAGTGTGGCCTGTaGCTACAAACACCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNGQCGL*LQTPLS
Trigger: TGACAGAGGTGTTTGTAGTCACAGGCCACACTGTCC...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp AGAGTTAAGACACTAACCACAACACAAAGTCACACGAAGGCCTCCTCCACTTACGCCTGGATCCCTTCCTaGCCACTGATGCCCACACCA +
Preference number: 4 (lower is better)
Translates to: RVKTLTTTQSHTKASSTYAWIPS*PLMPTP
Trigger: TGGTGTGGGCATCAGTGGGCAGGAAGGGATCCAGGC...GTAAGTGGAGGAGGCCTTCGTGTGACTTTGTGTTGTGGTTAGTGTCTTAACTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp TGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAACAAGGGCGCAAGGGCAAAGGACTGGTAGTCTaGCAGTTGGGTGCCATCATC +
Preference number: 4 (lower is better)
Translates to: WLPGVIHSCVIQEQGRKGKGLVV*QLGAII
Trigger: GATGATGGCACCCAACTGGCAGACTACCAGTCCTTT...GCCCTTGCGCCCTTGTTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCCAGTTACTCGCATACTaGAATTTCTCATTGTATTCA +
Preference number: 4 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELQLLAY*NFSLYS
Trigger: TGAATACAATGAGAAATTCCAGTATGCGAGTAACTG...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCATCCGCCGCCACAAACTaGTTATTTTCTAGCTTGATA +
Preference number: 4 (lower is better)
Translates to: LLLEAEPEDRALGYWAKASAATN*LFSSLI
Trigger: TATCAAGCTAGAAAATAACCAGTTTGTGGCGGCGGA...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACGGCGCACTTTCATGTTaGTCTCTCCATCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNGALSC*SLHPAL
Trigger: CAGAGCTGGATGGAGAGACCAACATGAAAGTGCGCC...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATCTCAGCAGCATGTTCTaGTTGCTCAGGGGGAACTTG +
Preference number: 4 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNLSSMF*LLRGNL
Trigger: CAAGTTCCCCCTGAGCAACCAGAACATGCTGCTGAG...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CTTCCTCCTTACTCTGCTGCTAGCAAACAAGAGGAAGAGATTCCTCTGGAAGCGAGATGGCATTACCGATaGCCAGGATCACCCCCATGC +
Preference number: 4 (lower is better)
Translates to: LPPYSAASKQEEEIPLEARWHYR*PGSPPC
Trigger: GCATGGGGGTGATCCTGGCCATCGGTAATGCCATCT...CGCTTCCAGAGGAATCTCTTCCTCTTGTTTGCTAGCAGCAGAGTAAGGAGGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTCTTCGTGCTCCCAGATaGCATTACCGATGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLLRAPR*HYRWPG
Trigger: TCCTGGCCATCGGTAATGCCATCTGGGAGCACGAAG...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp AAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTACCCTGCTGAGCAGCTCCTaGGTAGGAGGGTGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: KRKRFLWKRQVTTSSICTLLSSS*VGGWSL
Trigger: CAGGCTCCACCCTCCTACCCAGGAGCTGCTCAGCAG...GGTACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AAGTTGGAAGTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACTGGGCCAGGCTAGCCTaGAGGCGTCTCCTGGCCCAC +
Preference number: 4 (lower is better)
Translates to: KLEVSTLRNWGLNSESKNWARLA*RRLLAH
Trigger: GTGGGCCAGGAGACGCCTCCAGGCTAGCCTGGCCCA...GTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCACTTCCAACTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp CTTCCTCCTTACTCTGCTGCTAGCAAACAAGAGGAAGAGATTCCTCTGGAAGCGGAGTCAAGAGGGCAATaGTCTCTGGGACTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: LPPYSAASKQEEEIPLEAESRGQ*SLGLPA
Trigger: AGCAGGGAGTCCCAGAGACCATTGCCCTCTTGACTC...CGCTTCCAGAGGAATCTCTTCCTCTTGTTTGCTAGCAGCAGAGTAAGGAGGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAGTCAAGAGGGCAATaGTCTCTGGGACTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLESRGQ*SLGLPA
Trigger: AGCAGGGAGTCCCAGAGACCATTGCCCTCTTGACTC...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACGCATGGCAAAGAGGATaGCGAAGTACACTGCAAGGC +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNAWQRG*RSTLQG
Trigger: GCCTTGCAGTGTACTTCGCCATCCTCTTTGCCATGC...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTCGCCACTGGGGCTGTTaGCACTGTCACTTTTCTTCC +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLRHWGC*HCHFSS
Trigger: GGAAGAAAAGTGACAGTGCCAACAGCCCCAGTGGCG...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTCTCCCAGCTCTGAGGTaGCTGGAATGGCCTGGCGCA +
Preference number: 4 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICLPALR*LEWPGA
Trigger: TGCGCCAGGCCATTCCAGTCACCTCAGAGCTGGGAG...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp CTTCCTCCTTACTCTGCTGCTAGCAAACAAGAGGAAGAGATTCCTCTGGAAGCGCACACTGACGTACAGTaGGATGGGCACAACGGTGTT +
Preference number: 4 (lower is better)
Translates to: LPPYSAASKQEEEIPLEAHTDVQ*DGHNGV
Trigger: AACACCGTTGTGCCCATCTCACTGTACGTCAGTGTG...CGCTTCCAGAGGAATCTCTTCCTCTTGTTTGCTAGCAGCAGAGTAAGGAGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp ACTAGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACTCTTTTCTTCTGACATaGCAGTGTGACACAAGGAGA +
Preference number: 4 (lower is better)
Translates to: TSRTLEIQEPVCVPWGGHSFLLT*QCDTRR
Trigger: TCTCCTTGTGTCACACTGTCATGTCAGAAGAAAAGA...GTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp AAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTACCAATTCCTGGCTGCGGTaGCCAGAGCGCCCTCATCTG +
Preference number: 4 (lower is better)
Translates to: KRKRFLWKRQVTTSSICTNSWLR*PERPHL
Trigger: CAGATGAGGGCGCTCTGGTCACCGCAGCCAGGAATT...GGTACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATGCAACTTCCTGGAACTaGTCAAAGAGGTTGACAGGC +
Preference number: 4 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNATSWN*SKRLTG
Trigger: GCCTGTCAACCTCTTTGAGCAGTTCCAGGAAGTTGC...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACGTCCTGCCGCTGTTCTaGATCAGCTTAGTATCAGGA +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNVLPLF*ISLVSG
Trigger: TCCTGATACTAAGCTGATGCAGAACAGCGGCAGGAC...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTGCATGGGCCAGGCTGTaGCCGTTGATGACCAAGGCG +
Preference number: 4 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICAWARL*PLMTKA
Trigger: CGCCTTGGTCATCAACGGGCACAGCCTGGCCCATGC...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGGCATGGGCCAGGCTGTaGCCGTTGATGACCAAGGCG +
Preference number: 4 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMAWARL*PLMTKA
Trigger: CGCCTTGGTCATCAACGGGCACAGCCTGGCCCATGC...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATAAAGGACTGGTAGTCTaGCAGTTGGGTGCCATCATC +
Preference number: 4 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNKGLVV*QLGAII
Trigger: GATGATGGCACCCAACTGGCAGACTACCAGTCCTTT...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp CTTCCTCCTTACTCTGCTGCTAGCAAACAAGAGGAAGAGATTCCTCTGGAAGCGGATGGCGAAGTACACTaGAAGGCTGCCCCAGATGAA +
Preference number: 4 (lower is better)
Translates to: LPPYSAASKQEEEIPLEADGEVH*KAAPDE
Trigger: TTCATCTGGGGCAGCCTTGCAGTGTACTTCGCCATC...CGCTTCCAGAGGAATCTCTTCCTCTTGTTTGCTAGCAGCAGAGTAAGGAGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp AGAGTTAAGACACTAACCACAACACAAAGTCACACGAAGGCCTCCTCCACTTACCGGTGCTGCGCCTTCTaGTTCTTCCTTACCAGCTGG +
Preference number: 4 (lower is better)
Translates to: RVKTLTTTQSHTKASSTYRCCAF*FFLTSW
Trigger: CCAGCTGGTAAGGAAGAAGCAGAAGGCGCAGCACCG...GTAAGTGGAGGAGGCCTTCGTGTGACTTTGTGTTGTGGTTAGTGTCTTAACTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACGACAGGGACGAGATCTaGGGGATTAACTGCAGAATG +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNDRDEI*GINCRM
Trigger: CATTCTGCAGTTAATCCCCCAGATCTCGTCCCTGTC...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAACAAGGGCGCAAGGGCATCCACTGCTCTTGTTaGAGGACTCCATTGATCAGC +
Preference number: 4 (lower is better)
Translates to: WLPGVIHSCVIQEQGRKGIHCSC*RTPLIS
Trigger: GCTGATCAATGGAGTCCTCCAACAAGAGCAGTGGAT...GCCCTTGCGCCCTTGTTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGTGACTGGAATGGCCTaGCGCACTTTCATGTTGGTC +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLVTGMA*RTFMLV
Trigger: GACCAACATGAAAGTGCGCCAGGCCATTCCAGTCAC...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CCAGCAGCATCATGTCACTCTCAACCTCTTCATAGATGCTGGCTAGCCTGTCCTCAGAGCGCCCTCATCTaGAGACTGAGCTTTGTAGTA +
Preference number: 4 (lower is better)
Translates to: PAASCHSQPLHRCWLACPQSALI*RLSFVV
Trigger: TACTACAAAGCTCAGTCTCCAGATGAGGGCGCTCTG...AGGACAGGCTAGCCAGCATCTATGAAGAGGTTGAGAGTGACATGATGCTGCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
CDS-3UTR CCA 90 bp CTTCCTCCTTACTCTGCTGCTAGCAAACAAGAGGAAGAGATTCCTCTGGAAGCGACCTCCAGGACAGTGTaGCCTGTGACTACAAACACC +
Preference number: 4 (lower is better)
Translates to: LPPYSAASKQEEEIPLEATSRTV*PVTTNT
Trigger: GGTGTTTGTAGTCACAGGCCACACTGTCCTGGAGGT...CGCTTCCAGAGGAATCTCTTCCTCTTGTTTGCTAGCAGCAGAGTAAGGAGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTACCGAAGCCAGGACAGCCTaGATCCCTTCCTGCCCACTG +
Preference number: 4 (lower is better)
Translates to: KRKRFLWKRQVTTSSICTEARTA*IPSCPL
Trigger: CAGTGGGCAGGAAGGGATCCAGGCTGTCCTGGCTTC...GGTACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AGAGTTAAGACACTAACCACAACACAAAGTCACACGAAGGCCTCCTCCACTTACTGCCATCATCCCGAGTaGCCTCCGCAAACACCCCAT +
Preference number: 4 (lower is better)
Translates to: RVKTLTTTQSHTKASSTYCHHPE*PPQTPH
Trigger: ATGGGGTGTTTGCGGAGGCCACTCGGGATGATGGCA...GTAAGTGGAGGAGGCCTTCGTGTGACTTTGTGTTGTGGTTAGTGTCTTAACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACGTCCATTGCTGTGCATaGCAAAGAGGATGGCGAAGT +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNVHCCA*QRGWRS
Trigger: ACTTCGCCATCCTCTTTGCCATGCACAGCAATGGAC...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp GCCCCAGCAGGTCTCTGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAAAGTACAGAGTCCCACTaGATTTGTCCAGCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: APAGLWLPGVIHSCVIQESTESH*ICPACC
Trigger: ACAACAAGCTGGACAAATTCAGTGGGACTCTGTACT...TTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCAGAGACCTGCTGGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGCTTGCGAATGTTGTTaGAGTCCAAGATGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLACECC*SPRWPA
Trigger: TGCTGGCCATCTTGGACTTCAACAACATTCGCAAGC...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp CTTCTGCATCCCATCAGGACACTGGCACCCTTAAGTAGTTTGGTCCCTCCCAAGTTAGCACCCAAATCTTaGTGTTGGCCAGAGTCAAGA +
Preference number: 4 (lower is better)
Translates to: LLHPIRTLAPLSSLVPPKLAPKS*CWPESR
Trigger: TCTTGACTCTGGCCAACATCAAGATTTGGGTGCTAA...CTTGGGAGGGACCAAACTACTTAAGGGTGCCAGTGTCCTGATGGGATGCAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp TGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAACAAGGGCGCAAGGGCAGAAGTGGACCATGGTaGACGCAAAGTTCTTGTAGA +
Preference number: 4 (lower is better)
Translates to: WLPGVIHSCVIQEQGRKGRSGPW*TQSSCR
Trigger: TCTACAAGAACTTTGCGTTCACCATGGTCCACTTCT...GCCCTTGCGCCCTTGTTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp GCAGCATCATGTCACTCTCAACCTCTTCATAGATGCTGGCTAGCCTGTCCTCTCGCATACTCCTATGACTaGCATCCGCTTGCGAATGTT +
Preference number: 4 (lower is better)
Translates to: AASCHSQPLHRCWLACPLAYSYD*HPLANV
Trigger: AACATTCGCAAGCGGATGTCAGTCATAGGAGTATGC...GAGAGGACAGGCTAGCCAGCATCTATGAAGAGGTTGAGAGTGACATGATGCTGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
CDS-3UTR GCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTCTCTCCATCCAGCTCTaGGGTCTCTATGTAACACAG +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLLSIQL*GLYVTQ
Trigger: CTGTGTTACATAGAGACCGCAGAGCTGGATGGAGAG...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACCTTAGTATCAGGACCTaGAAAGATGACCAGCCCGAA +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNLSIRT*KDDQPE
Trigger: TTCGGGCTGGTCATCTTTGCAGGTCCTGATACTAAG...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GCCCCAGCAGGTCTCTGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAATTCACAGCTGTCTCTTaGTTATCTCCTGTTAGCACC +
Preference number: 4 (lower is better)
Translates to: APAGLWLPGVIHSCVIQEFTAVS*LSPVST
Trigger: GGTGCTAACAGGAGATAAGCAAGAGACAGCTGTGAA...TTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCAGAGACCTGCTGGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGTATCCAGCCCAATCTaGACACTGACCACAATGACC +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLVSSPI*TLTTMT
Trigger: GGTCATTGTGGTCAGTGTGCAGATTGGGCTGGATAC...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACACAGGAAGTAGGTGTTaGCAACTTCCTGGAACTGCT +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNTGSRC*QLPGTA
Trigger: AGCAGTTCCAGGAAGTTGCCAACACCTACTTCCTGT...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACATCCACTGCTCTTGTTaGAGGACTCCATTGATCAGC +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNIHCSC*RTPLIS
Trigger: GCTGATCAATGGAGTCCTCCAACAAGAGCAGTGGAT...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTCAGCTTGTTGTTGGGTaGTTCGCAGATTACTTCGCC +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLQLVVG*FADYFA
Trigger: GGCGAAGTAATCTGCGAACCACCCAACAACAAGCTG...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAAGTCAACAGGCTCTaGTCTCTCTCCCAATTCAGC +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLEVNRL*SLSQFS
Trigger: GCTGAATTGGGAGAGAGACCAGAGCCTGTTGACTTC...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACGCTGTACCGAGCTCATaGACAGTGATTGTTTTAGGG +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNAVPSS*TVIVLG
Trigger: CCCTAAAACAATCACTGTCCATGAGCTCGGTACAGC...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGCATACTCATTCAGATaGTCAGTGGTGCTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLAYSFR*SVVLLS
Trigger: GCTCAGCAGCACCACTGACCATCTGAATGAGTATGC...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GCCCCAGCAGGTCTCTGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAAAAACCGGAACTGGTTTaGGAACATGTCAAAGAGTCC +
Preference number: 4 (lower is better)
Translates to: APAGLWLPGVIHSCVIQEKPELV*EHVKES
Trigger: GGACTCTTTGACATGTTCCCAAACCAGTTCCGGTTT...TTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCAGAGACCTGCTGGGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACTGTACTTGGAGGTCTTaGTGCAGTTACTCGCATACT +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNCTWRS*CSYSHT
Trigger: AGTATGCGAGTAACTGCATCAAGACCTCCAAGTACA...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATTGTACTTGGAGGTCTTaGTGCAGTTACTCGCATACT +
Preference number: 4 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNCTWRS*CSYSHT
Trigger: AGTATGCGAGTAACTGCATCAAGACCTCCAAGTACA...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACGGATTAACTGCAGAATaGGAAGGAACAGGAAGTAGG +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNGLTAE*EGTGSR
Trigger: CCTACTTCCTGTTCCTTCTCATTCTGCAGTTAATCC...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR TCA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATAGAAGTGGACCATGGTaGACGCAAAGTTCTTGTAGA +
Preference number: 4 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNRSGPW*TQSSCR
Trigger: TCTACAAGAACTTTGCGTTCACCATGGTCCACTTCT...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGCAGCATGTTCTGGTTaGTCAGGGGGAACTTGTTTT +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLAACSG*SGGTCF
Trigger: AAAACAAGTTCCCCCTGAGCAACCAGAACATGCTGC...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR GCA 90 bp GTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACCCTATTTCCCGGTGCTGCGCCTTCTaGTTCTTCCTTACCAGCTGG +
Preference number: 4 (lower is better)
Translates to: VSTLRNWGLNSESKNPISRCCAF*FFLTSW
Trigger: CCAGCTGGTAAGGAAGAAGCAGAAGGCGCAGCACCG...GGAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAGCCAGTTACTCGCATACTaGAATTTCTCATTGTATTCA +
Preference number: 4 (lower is better)
Translates to: SRTLEIQEPVCVPWGGHSQLLAY*NFSLYS
Trigger: TGAATACAATGAGAAATTCCAGTATGCGAGTAACTG...GCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGTGTTGGCAACTTCCTaGAACTGCTCAAAGAGGTTG +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLVLATS*NCSKRL
Trigger: CAACCTCTTTGAGCAGTTCCAGGAAGTTGCCAACAC...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp CTTCCTCCTTACTCTGCTGCTAGCAAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGAAGTAGGTGTTaGCAACTTCCTGGAACTGCT +
Preference number: 4 (lower is better)
Translates to: LPPYSAASKQEEEIPLEATGSRC*QLPGTA
Trigger: AGCAGTTCCAGGAAGTTGCCAACACCTACTTCCTGT...CGCTTCCAGAGGAATCTCTTCCTCTTGTTTGCTAGCAGCAGAGTAAGGAGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AGAGTTAAGACACTAACCACAACACAAAGTCACACGAAGGCCTCCTCCACTTACGGCGCACTTTCATGTTaGTCTCTCCATCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: RVKTLTTTQSHTKASSTYGALSC*SLHPAL
Trigger: CAGAGCTGGATGGAGAGACCAACATGAAAGTGCGCC...GTAAGTGGAGGAGGCCTTCGTGTGACTTTGTGTTGTGGTTAGTGTCTTAACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTCCTGGAGGCGTCTCCTaGCCCACTCCTCATAGTACT +
Preference number: 4 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICPGGVS*PTPHST
Trigger: AGTACTATGAGGAGTGGGCCAGGAGACGCCTCCAGG...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTCCCACAAACCGGAACTaGTTTGGGAACATGTCAAAG +
Preference number: 4 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLPTNRN*FGNMSK
Trigger: CTTTGACATGTTCCCAAACCAGTTCCGGTTTGTGGG...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp AAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTACCCGCCACTGGGGCTGTTaGCACTGTCACTTTTCTTCC +
Preference number: 4 (lower is better)
Translates to: KRKRFLWKRQVTTSSICTRHWGC*HCHFSS
Trigger: GGAAGAAAAGTGACAGTGCCAACAGCCCCAGTGGCG...GGTACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp AAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTACCGGACAGTGTGGCCTGTaGCTACAAACACCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: KRKRFLWKRQVTTSSICTGQCGL*LQTPLS
Trigger: TGACAGAGGTGTTTGTAGTCACAGGCCACACTGTCC...GGTACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTTTCCGGGCTTTCCTGTaGGGGCAGGGAAGAAACTGT +
Preference number: 4 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICFRAFL*GQGRNC
Trigger: ACAGTTTCTTCCCTGCCCTCACAGGAAAGCCCGGAA...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp AAGTTGGAAGTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACAGACGGAAGAACTCGTaGGTGTGTGGGTCCCCCATC +
Preference number: 4 (lower is better)
Translates to: KLEVSTLRNWGLNSESKNRRKNS*VCGSPI
Trigger: GATGGGGGACCCACACACGCACGAGTTCTTCCGTCT...GTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCACTTCCAACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTCAGTTCCACCACTTGTaGCTTCTGCAGGGGTGTCAC +
Preference number: 4 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICQFHHL*LLQGCH
Trigger: GTGACACCCCTGCAGAAGGCACAAGTGGTGGAACTG...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp TGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAACAAGGGCGCAAGGGCTTTCTTGTCAGCCAGTaGATTAAAGGAGAAGTCAAC +
Preference number: 4 (lower is better)
Translates to: WLPGVIHSCVIQEQGRKGFLVSQ*IKGEVN
Trigger: GTTGACTTCTCCTTTAATCCACTGGCTGACAAGAAA...GCCCTTGCGCCCTTGTTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTTCCTGGGTAGGAGGGTaGAGCCTGTCTAGCAGGATT +
Preference number: 4 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICSWVGG*SLSSRI
Trigger: AATCCTGCTAGACAGGCTCCACCCTCCTACCCAGGA...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp GTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACCCTATTTCCGAGTCAAGAGGGCAATaGTCTCTGGGACTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: VSTLRNWGLNSESKNPISESRGQ*SLGLPA
Trigger: AGCAGGGAGTCCCAGAGACCATTGCCCTCTTGACTC...GGAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTGGACAGTGTGGCCTGTaGCTACAAACACCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICGQCGL*LQTPLS
Trigger: TGACAGAGGTGTTTGTAGTCACAGGCCACACTGTCC...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp AGAGTTAAGACACTAACCACAACACAAAGTCACACGAAGGCCTCCTCCACTTACGACAGAAGTGAGCTTTaGAGAAGAAAGGTTCCCCTG +
Preference number: 4 (lower is better)
Translates to: RVKTLTTTQSHTKASSTYDRSEL*RRKVPL
Trigger: CAGGGGAACCTTTCTTCTTCAAAGCTCACTTCTGTC...GTAAGTGGAGGAGGCCTTCGTGTGACTTTGTGTTGTGGTTAGTGTCTTAACTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp AGAGTTAAGACACTAACCACAACACAAAGTCACACGAAGGCCTCCTCCACTTACTTGTGTCAGCCCCTTTaGAGTAGAGTCGTATCTTCC +
Preference number: 4 (lower is better)
Translates to: RVKTLTTTQSHTKASSTYLCQPL*SRVVSS
Trigger: GGAAGATACGACTCTACTGCAAAGGGGCTGACACAA...GTAAGTGGAGGAGGCCTTCGTGTGACTTTGTGTTGTGGTTAGTGTCTTAACTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTGATGGCGAAGTACACTaGAAGGCTGCCCCAGATGAA +
Preference number: 4 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICDGEVH*KAAPDE
Trigger: TTCATCTGGGGCAGCCTTGCAGTGTACTTCGCCATC...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp GTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACCCTATTTCCTGTCACTTTTCTTCCTaGGCAGGCTCTCGATCCAGC +
Preference number: 4 (lower is better)
Translates to: VSTLRNWGLNSESKNPISCHFSS*AGSRSS
Trigger: GCTGGATCGAGAGCCTGCGCAGGAAGAAAAGTGACA...GGAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp GTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACCCTATTTCCCTCAGCAGCATGTTCTaGTTGCTCAGGGGGAACTTG +
Preference number: 4 (lower is better)
Translates to: VSTLRNWGLNSESKNPISLSSMF*LLRGNL
Trigger: CAAGTTCCCCCTGAGCAACCAGAACATGCTGCTGAG...GGAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACTTTCTTGTCAGCCAGTaGATTAAAGGAGAAGTCAAC +
Preference number: 4 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNFLVSQ*IKGEVN
Trigger: GTTGACTTCTCCTTTAATCCACTGGCTGACAAGAAA...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CCA 90 bp GTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACCCTATTTCCACCTCCAGGACAGTGTaGCCTGTGACTACAAACACC +
Preference number: 4 (lower is better)
Translates to: VSTLRNWGLNSESKNPISTSRTV*PVTTNT
Trigger: GGTGTTTGTAGTCACAGGCCACACTGTCCTGGAGGT...GGAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp AAGTTGGAAGTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACTCTGACATGACAGTGTaGCACAAGGAGAGGAGACGG +
Preference number: 4 (lower is better)
Translates to: KLEVSTLRNWGLNSESKNSDMTV*HKERRR
Trigger: CCGTCTCCTCTCCTTGTGTCACACTGTCATGTCAGA...GTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCACTTCCAACTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGGCTTGCGAATGTTGTTaGAGTCCAAGATGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMACECC*SPRWPA
Trigger: TGCTGGCCATCTTGGACTTCAACAACATTCGCAAGC...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp AAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTACCGACAGAAGTGAGCTTTaGAGAAGAAAGGTTCCCCTG +
Preference number: 4 (lower is better)
Translates to: KRKRFLWKRQVTTSSICTDRSEL*RRKVPL
Trigger: CAGGGGAACCTTTCTTCTTCAAAGCTCACTTCTGTC...GGTACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp GTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACCCTATTTCCCTCTCCATCCAGCTCTaGGGTCTCTATGTAACACAG +
Preference number: 4 (lower is better)
Translates to: VSTLRNWGLNSESKNPISLSIQL*GLYVTQ
Trigger: CTGTGTTACATAGAGACCGCAGAGCTGGATGGAGAG...GGAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTGGGTCCGCTTCTTCATaGAGAACATCTTCTTGTCCC +
Preference number: 4 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICGSASS*RTSSCP
Trigger: GGGACAAGAAGATGTTCTGCATGAAGAAGCGGACCC...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGGACAGGGACGAGATCTaGGGGATTAACTGCAGAATG +
Preference number: 4 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMDRDEI*GINCRM
Trigger: CATTCTGCAGTTAATCCCCCAGATCTCGTCCCTGTC...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGCAGCTTGTTGTTGGGTaGTTCGCAGATTACTTCGCC +
Preference number: 4 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMQLVVG*FADYFA
Trigger: GGCGAAGTAATCTGCGAACCACCCAACAACAAGCTG...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTCAGAGCGCCCTCATCTaGAGACTGAGCTTTGTAGTA +
Preference number: 4 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICQSALI*RLSFVV
Trigger: TACTACAAAGCTCAGTCTCCAGATGAGGGCGCTCTG...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTCTTAGTATCAGGACCTaGAAAGATGACCAGCCCGAA +
Preference number: 4 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICLSIRT*KDDQPE
Trigger: TTCGGGCTGGTCATCTTTGCAGGTCCTGATACTAAG...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp AAGTTGGAAGTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACGGGTCCGCTTCTTCATaGAGAACATCTTCTTGTCCC +
Preference number: 4 (lower is better)
Translates to: KLEVSTLRNWGLNSESKNGSASS*RTSSCP
Trigger: GGGACAAGAAGATGTTCTGCATGAAGAAGCGGACCC...GTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCACTTCCAACTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTCCCACAAACCGGAACTaGTTTGGGAACATGTCAAAG +
Preference number: 4 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICPTNRN*FGNMSK
Trigger: CTTTGACATGTTCCCAAACCAGTTCCGGTTTGTGGG...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTGTACTTGGAGGTCTTaGTGCAGTTACTCGCATACT +
Preference number: 4 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMCTWRS*CSYSHT
Trigger: AGTATGCGAGTAACTGCATCAAGACCTCCAAGTACA...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGGGATTAACTGCAGAATaGGAAGGAACAGGAAGTAGG +
Preference number: 4 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMGLTAE*EGTGSR
Trigger: CCTACTTCCTGTTCCTTCTCATTCTGCAGTTAATCC...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGAGTACAGAGTCCCACTaGATTTGTCCAGCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMSTESH*ICPACC
Trigger: ACAACAAGCTGGACAAATTCAGTGGGACTCTGTACT...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTTAGCACCCAAATCTTaGTGTTGGCCAGAGTCAAGA +
Preference number: 4 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMLAPKS*CWPESR
Trigger: TCTTGACTCTGGCCAACATCAAGATTTGGGTGCTAA...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp GTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACCCTATTTCCATGCCCACACCAATGTaGGCAGTTTTAATCATGCTG +
Preference number: 4 (lower is better)
Translates to: VSTLRNWGLNSESKNPISMPTPM*AVLIML
Trigger: CAGCATGATTAAAACTGCTCACATTGGTGTGGGCAT...GGAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR TCA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTAGAAGTGGACCATGGTaGACGCAAAGTTCTTGTAGA +
Preference number: 4 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICRSGPW*TQSSCR
Trigger: TCTACAAGAACTTTGCGTTCACCATGGTCCACTTCT...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp AAGTTGGAAGTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACTTGTGTCAGCCCCTTTaGAGTAGAGTCGTATCTTCC +
Preference number: 4 (lower is better)
Translates to: KLEVSTLRNWGLNSESKNLCQPL*SRVVSS
Trigger: GGAAGATACGACTCTACTGCAAAGGGGCTGACACAA...GTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCACTTCCAACTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTTGTCAAAGAGTCCATTaGTGTGCATGGCAAAGAGGA +
Preference number: 4 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICCQRVH*CAWQRG
Trigger: TCCTCTTTGCCATGCACAGCAATGGACTCTTTGACA...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AAGTTGGAAGTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACGCTGTACCGAGCTCATaGACAGTGATTGTTTTAGGG +
Preference number: 4 (lower is better)
Translates to: KLEVSTLRNWGLNSESKNAVPSS*TVIVLG
Trigger: CCCTAAAACAATCACTGTCCATGAGCTCGGTACAGC...GTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCACTTCCAACTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
3UTR CAA 72 bp GAAGGAAGGGAAGTTGGAAGTGAGTACGCTAAGGAATaGGGGACTCAATTCAGAATCCAAAAACCCTATTTC +
Preference number: 4 (lower is better)
Translates to: EGREVGSEYAKE*GTQFRIQKPYF
Trigger: GAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCACTTCCAACTTCCCTTCCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR GCA 90 bp AAGTTGGAAGTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACATCTGGGGGATTAACTaGAGAATGAGAAGGAACAGG +
Preference number: 4 (lower is better)
Translates to: KLEVSTLRNWGLNSESKNIWGIN*RMRRNR
Trigger: CCTGTTCCTTCTCATTCTGCAGTTAATCCCCCAGAT...GTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCACTTCCAACTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTCCGCCGCCACAAACTaGTTATTTTCTAGCTTGATA +
Preference number: 4 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMSAATN*LFSSLI
Trigger: TATCAAGCTAGAAAATAACCAGTTTGTGGCGGCGGA...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CCA 90 bp AGAGTTAAGACACTAACCACAACACAAAGTCACACGAAGGCCTCCTCCACTTACCAGTTACTCGCATACTaGAATTTCTCATTGTATTCA +
Preference number: 4 (lower is better)
Translates to: RVKTLTTTQSHTKASSTYQLLAY*NFSLYS
Trigger: TGAATACAATGAGAAATTCCAGTATGCGAGTAACTG...GTAAGTGGAGGAGGCCTTCGTGTGACTTTGTGTTGTGGTTAGTGTCTTAACTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS CCA 90 bp GCCCGCGCCCTCCGCTCTTCTTCTGTCCCCCAAGAAGGCTTCTTCTaGCTCCAAGAGGGAGGTGCCCCGGCCCGGGCCCACTTCTCGGGT +
Preference number: 5 (lower is better)
Translates to: ARALRSSSVPQEGFF*LQEGGAPARAHFSG
Trigger: ACCCGAGAAGTGGGCCCGGGCCGGGGCACCTCCCTCTTGGAGCCAGAAGAAGCCTTCTTGGGGGACAGAAGAAGAGCGGAGGGCGCGGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000171422.2
CDS GCA 90 bp AGGCATAGCCAGAGCGCCGAGAGCCTGTGCGGCCCACTCGCCGCATaGAGCGGTGCTGCGCCTTCTGCTTCTTCCTTACCAGCTGGGTGT +
Preference number: 5 (lower is better)
Translates to: RHSQSAESLCGPLAA*SGAAPSASSLPAGC
Trigger: ACACCCAGCTGGTAAGGAAGAAGCAGAAGGCGCAGCACCGCTGCATGCGGCGAGTGGGCCGCACAGGCTCTCGGCGCTCTGGCTATGCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000166502.2
ENSMUST00000168276.8
CDS GCA 90 bp TTCTTCTGTCCCCCAAGAAGGCTTCTTCTGGCTCCAAGAGGGAGGTaGCCCGGCCCGGGCCCACTTCTCGGGTATCTCCTTGGGGACCGT +
Preference number: 5 (lower is better)
Translates to: FFCPPRRLLLAPRGR*PGPGPLLGYLLGDR
Trigger: ACGGTCCCCAAGGAGATACCCGAGAAGTGGGCCCGGGCCGGGGCACCTCCCTCTTGGAGCCAGAAGAAGCCTTCTTGGGGGACAGAAGAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000171422.2
CDS GCA 90 bp AACCTTCCTGATGAGAGAAGGCATAGCCAGAGCGCCGAGAGCCTGTaGGGCCCACTCGCCGCATGCAGCGGTGCTGCGCCTTCTGCTTCT +
Preference number: 5 (lower is better)
Translates to: NLPDERRHSQSAESL*GPLAACSGAAPSAS
Trigger: AGAAGCAGAAGGCGCAGCACCGCTGCATGCGGCGAGTGGGCCGCACAGGCTCTCGGCGCTCTGGCTATGCCTTCTCTCATCAGGAAGGTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000166502.2
ENSMUST00000168276.8
CDS CCA 90 bp ATGCAGACAGCCGTGGTGAGCGCGATGGTGAGCCACACGGTGGGCTaGGCCAGGGTGTTCTGGGCATTCCCCACAAACCGGAACTGGTTT +
Preference number: 5 (lower is better)
Translates to: MQTAVVSAMVSHTVG*ARVFWAFPTNRNWF
Trigger: AAACCAGTTCCGGTTTGTGGGGAATGCCCAGAACACCCTGGCCCAGCCCACCGTGTGGCTCACCATCGCGCTCACCACGGCTGTCTGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGGAGCTGGTAGTCTGCCAGTaGGGTGCCATCATCCCGAGT +
Preference number: 5 (lower is better)
Translates to: FLRRLSIQLELERVLKLELVVCQ*GAIIPS
Trigger: ACTCGGGATGATGGCACCCAACTGGCAGACTACCAG...CTCCAGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR CAA 90 bp GGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCCTGGTAGTCTGCCAGTaGGGTGCCATCATCCCGAGT +
Preference number: 5 (lower is better)
Translates to: GCMEDQQFPDTGPVSSGPLVVCQ*GAIIPS
Trigger: ACTCGGGATGATGGCACCCAACTGGCAGACTACCAG...GGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp GGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCCCGCCACTGGGGCTGTaGGCACTGTCACTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: GCMEDQQFPDTGPVSSGPPPLGL*ALSLFF
Trigger: GAAGAAAAGTGACAGTGCCAACAGCCCCAGTGGCGG...GGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCGCCTGTCTAGCAGGATaGTGTCAGCCCCTTTGCAGT +
Preference number: 5 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELACLAG*CQPLCS
Trigger: ACTGCAAAGGGGCTGACACAATCCTGCTAGACAGGC...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CCA 90 bp AGGGCAGGTAGACCTGGAAGCGCGTCCCAACTTCGTGCTCCCAGATaGCATTACCGATGGCCAGGATCACCCCCATGCAAACCAGGAACC +
Preference number: 5 (lower is better)
Translates to: RAGRPGSASQLRAPR*HYRWPGSPPCKPGT
Trigger: GGTTCCTGGTTTGCATGGGGGTGATCCTGGCCATCGGTAATGCCATCTGGGAGCACGAAGTTGGGACGCGCTTCCAGGTCTACCTGCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCACCCAAATCTTGATGTaGGCCAGAGTCAAGAGGGCA +
Preference number: 5 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPTQILM*ARVKRA
Trigger: TGCCCTCTTGACTCTGGCCAACATCAAGATTTGGGT...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS GCA 90 bp AGAAACTCTAGCTCCATATCAGCCTCCAAGGCATGGGCCAGGCTGTaGCCGTTGATGACCAAGGCGTACTCCCCAGCAACAGCCTCCAGG +
Preference number: 5 (lower is better)
Translates to: RNSSSISASKAWARL*PLMTKAYSPATASR
Trigger: CCTGGAGGCTGTTGCTGGGGAGTACGCCTTGGTCATCAACGGGCACAGCCTGGCCCATGCCTTGGAGGCTGATATGGAGCTAGAGTTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000171941.2
CDS-3UTR CAA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTCTGAATTTGTCCAGCTaGTTGTTGGGTGGTTCGCAG +
Preference number: 5 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCLNLSS*LLGGSQ
Trigger: CTGCGAACCACCCAACAACAAGCTGGACAAATTCAG...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp GGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCATCCGCTTGCGAATGTaGTTGAAGTCCAAGATGGCC +
Preference number: 5 (lower is better)
Translates to: GCMEDQQFPDTGPVSSGPIRLRM*LKSKMA
Trigger: GGCCATCTTGGACTTCAACAACATTCGCAAGCGGAT...GGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp GGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCCTAAGCCGCATGTTCTaGCCAGACATAATGAGCTCC +
Preference number: 5 (lower is better)
Translates to: GCMEDQQFPDTGPVSSGPLSRMF*PDIMSS
Trigger: GGAGCTCATTATGTCTGGCAAGAACATGCGGCTTAG...GGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS TCA 90 bp CCCACAGCGTGGGAGGAATCTACCATCTTCTTCCGGGCTTTCCTGTaGGGGCAGGGAAGAAACTGTGGTAGGACCGCAGGACAAGCACAC +
Preference number: 5 (lower is better)
Translates to: PTAWEESTIFFRAFL*GQGRNCGRTAGQAH
Trigger: GTGTGCTTGTCCTGCGGTCCTACCACAGTTTCTTCCCTGCCCTCACAGGAAAGCCCGGAAGAAGATGGTAGATTCCTCCCACGCTGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107396.8
CDS GCA 90 bp ATCCAGGTCTTTGTAGGCCAACACCAGGGTCCTCAGCCCGTCCCCTaGATACTCATTCAGATGGTCAGTGGTGCTGCTGAGCAGCTCCTG +
Preference number: 5 (lower is better)
Translates to: IQVFVGQHQGPQPVP*ILIQMVSGAAEQLL
Trigger: CAGGAGCTGCTCAGCAGCACCACTGACCATCTGAATGAGTATGCAGGGGACGGGCTGAGGACCCTGGTGTTGGCCTACAAAGACCTGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCTTGTACTTGGAGGTCTaGATGCAGTTACTCGCATAC +
Preference number: 5 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVLYLEV*MQLLAY
Trigger: GTATGCGAGTAACTGCATCAAGACCTCCAAGTACAA...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCAATTTGTCCAGCTTGTaGTTGGGTGGTTCGCAGATT +
Preference number: 5 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVNLSSL*LGGSQI
Trigger: AATCTGCGAACCACCCAACAACAAGCTGGACAAATT...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp GGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTTGCTCAGGGGGAACTaGTTTTCCTTCCAGTACAGA +
Preference number: 5 (lower is better)
Translates to: GGRLHGGPAVSRHRPCELLLRGN*FSFQYR
Trigger: TCTGTACTGGAAGGAAAACAAGTTCCCCCTGAGCAA...GAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp CCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCCCGTTGATGGAGCATTaGTTGAACACCATGATGTTC +
Preference number: 5 (lower is better)
Translates to: PGRGGRLHGGPAVSRHRPPLMEH*LNTMMF
Trigger: GAACATCATGGTGTTCAACAAATGCTCCATCAACGG...GGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp GGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTTCTCCCAATTCAGCTTaGTGCCCCAAGACATCAAAC +
Preference number: 5 (lower is better)
Translates to: GRGGRLHGGPAVSRHRPCSPNSA*CPKTSN
Trigger: GTTTGATGTCTTGGGGCACAAAGCTGAATTGGGAGA...ACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp GGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCATGACTGACATCCGCTaGCGAATGTTGTTGAAGTCC +
Preference number: 5 (lower is better)
Translates to: GCMEDQQFPDTGPVSSGPMTDIR*RMLLKS
Trigger: GGACTTCAACAACATTCGCAAGCGGATGTCAGTCAT...GGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TGTGTCCACCAGTCCCAGCTCCACGCCAGTCTTCCTCCTTACTCTGCTGCTAGCGCCTGTCTAGCAGGATaGTGTCAGCCCCTTTGCAGT +
Preference number: 5 (lower is better)
Translates to: CVHQSQLHASLPPYSAASACLAG*CQPLCS
Trigger: ACTGCAAAGGGGCTGACACAATCCTGCTAGACAGGC...GCTAGCAGCAGAGTAAGGAGGAAGACTGGCGTGGAGCTGGGACTGGTGGACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp CTTCTGCATCCCATCAGGACACTGGCACCCTTAAGTAGTTTGGTCCCTCCCAAGGCCAGGCTGTGCCCGTaGATGACCAAGGCGTACTCC +
Preference number: 5 (lower is better)
Translates to: LLHPIRTLAPLSSLVPPKARLCP*MTKAYS
Trigger: GGAGTACGCCTTGGTCATCAACGGGCACAGCCTGGC...CTTGGGAGGGACCAAACTACTTAAGGGTGCCAGTGTCCTGATGGGATGCAGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp TTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGGAGATGTCAAAGAGTCCATaGCTGTGCATGGCAAAGAGG +
Preference number: 5 (lower is better)
Translates to: FLRRLSIQLELERVLKLEMSKSP*LCMAKR
Trigger: CCTCTTTGCCATGCACAGCAATGGACTCTTTGACAT...CTCCAGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR CAA 90 bp TTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTGGAGCAAACCGGAACTGGTTaGGGAACATGTCAAAGAGTC +
Preference number: 5 (lower is better)
Translates to: FLRRLSIQLELERVLKLEQTGTG*GTCQRV
Trigger: GACTCTTTGACATGTTCCCAAACCAGTTCCGGTTTG...CTCCAGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS TCA 90 bp ATGTTGGCCAGAGTCAAGAGGGCAATGGTCTCTGGGACTCCCTGCTaGAGCTTGTCCTCAATGGCCGTGGCACCCAGCAGCATCATGTCA +
Preference number: 5 (lower is better)
Translates to: MLARVKRAMVSGTPC*SLSSMAVAPSSIMS
Trigger: TGACATGATGCTGCTGGGTGCCACGGCCATTGAGGACAAGCTTCAGCAGGGAGTCCCAGAGACCATTGCCCTCTTGACTCTGGCCAACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS GCA 90 bp CATCCAGCTCTGCGGTCTCTATGTAACACAGCCCGTGGGGTTCGCTaGTGGAAAGGAGGAGGAGGTCCGCCGCCACAAACTGGTTATTTT +
Preference number: 5 (lower is better)
Translates to: HPALRSLCNTARGVR*WKGGGGPPPQTGYF
Trigger: AAAATAACCAGTTTGTGGCGGCGGACCTCCTCCTCCTTTCCAGCAGCGAACCCCACGGGCTGTGTTACATAGAGACCGCAGAGCTGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CCA 90 bp CCAGCTCTGCGGTCTCTATGTAACACAGCCCGTGGGGTTCGCTGCTaGAAAGGAGGAGGAGGTCCGCCGCCACAAACTGGTTATTTTCTA +
Preference number: 5 (lower is better)
Translates to: PALRSLCNTARGVRC*KGGGGPPPQTGYFL
Trigger: TAGAAAATAACCAGTTTGTGGCGGCGGACCTCCTCCTCCTTTCCAGCAGCGAACCCCACGGGCTGTGTTACATAGAGACCGCAGAGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CCA 90 bp GACAGTGTGACACAAGGAGAGGAGACGGAAGAACTCGTGCGTGTGTaGGTCCCCCATCTTGACGGCCTCCAAGAGACTCGAGTCCCAAAA +
Preference number: 5 (lower is better)
Translates to: DSVTQGEETEELVRV*VPHLDGLQETRVPK
Trigger: TTTTGGGACTCGAGTCTCTTGGAGGCCGTCAAGATGGGGGACCCACACACGCACGAGTTCTTCCGTCTCCTCTCCTTGTGTCACACTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CCA 90 bp CACCCAAATCTTGATGTTGGCCAGAGTCAAGAGGGCAATGGTCTCTaGGACTCCCTGCTGAAGCTTGTCCTCAATGGCCGTGGCACCCAG +
Preference number: 5 (lower is better)
Translates to: HPNLDVGQSQEGNGL*DSLLKLVLNGRGTQ
Trigger: CTGGGTGCCACGGCCATTGAGGACAAGCTTCAGCAGGGAGTCCCAGAGACCATTGCCCTCTTGACTCTGGCCAACATCAAGATTTGGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp GGCTGCATGGAGGACCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCATTCATCCACTGCTCTaGTTGGAGGACTCCATTGAT +
Preference number: 5 (lower is better)
Translates to: GCMEDQQFPDTGPVSSGPIHPLL*LEDSID
Trigger: ATCAATGGAGTCCTCCAACAAGAGCAGTGGATGAAT...GGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCATGGCGCACTTTCATGTaGGTCTCTCCATCCAGCTCT +
Preference number: 5 (lower is better)
Translates to: LLLEAEPEDRALGYWAKAWRTFM*VSPSSS
Trigger: AGAGCTGGATGGAGAGACCAACATGAAAGTGCGCCA...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGAGAGTCCCACTGAATTaGTCCAGCTTGTTGTTGGGT +
Preference number: 5 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPRVPLN*SSLLLG
Trigger: ACCCAACAACAAGCTGGACAAATTCAGTGGGACTCT...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGTTGCTCAGGGGGAACTaGTTTTCCTTCCAGTACAGA +
Preference number: 5 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPLLRGN*FSFQYR
Trigger: TCTGTACTGGAAGGAAAACAAGTTCCCCCTGAGCAA...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACGCCAGGCTGTGCCCGTaGATGACCAAGGCGTACTCC +
Preference number: 5 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNARLCP*MTKAYS
Trigger: GGAGTACGCCTTGGTCATCAACGGGCACAGCCTGGC...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TTTCTTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCGTGCTGAAGCTCTAAGCCGCATGTTCTaGCCAGACATAATGAGCTCC +
Preference number: 5 (lower is better)
Translates to: FLPAQALDPAGAGARAEALSRMF*PDIMSS
Trigger: GGAGCTCATTATGTCTGGCAAGAACATGCGGCTTAG...AGCTTCAGCACGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS-3UTR CAA 90 bp CCAGCAGTTTCCAGACACCGGCCCTGTGAGCTCTGGTCCCTGACGCAGGGGGTCGTGACAATATTGTACTaGGAGGTCTTGATGCAGTTA +
Preference number: 5 (lower is better)
Translates to: PAVSRHRPCELWSLTQGVVTILY*EVLMQL
Trigger: TAACTGCATCAAGACCTCCAAGTACAATATTGTCAC...GACCCCCTGCGTCAGGGACCAGAGCTCACAGGGCCGGTGTCTGGAAACTGCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TGTGTCCACCAGTCCCAGCTCCACGCCAGTCTTCCTCCTTACTCTGCTGCTAGCCTGAATTTGTCCAGCTaGTTGTTGGGTGGTTCGCAG +
Preference number: 5 (lower is better)
Translates to: CVHQSQLHASLPPYSAASLNLSS*LLGGSQ
Trigger: CTGCGAACCACCCAACAACAAGCTGGACAAATTCAG...GCTAGCAGCAGAGTAAGGAGGAAGACTGGCGTGGAGCTGGGACTGGTGGACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp TCCACCAGGCAGAGGAGGCAGGCTGCATGGAGGACCAGCAGTTTCCAGACACCGCCGTTGATGGAGCATTaGTTGAACACCATGATGTTC +
Preference number: 5 (lower is better)
Translates to: STRQRRQAAWRTSSFQTPPLMEH*LNTMMF
Trigger: GAACATCATGGTGTTCAACAAATGCTCCATCAACGG...CGGTGTCTGGAAACTGCTGGTCCTCCATGCAGCCTGCCTCCTCTGCCTGGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCAACCCAAATCTTGATGTaGGCCAGAGTCAAGAGGGCA +
Preference number: 5 (lower is better)
Translates to: LLLEAEPEDRALGYWAKATQILM*ARVKRA
Trigger: TGCCCTCTTGACTCTGGCCAACATCAAGATTTGGGT...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp CTTCTGCATCCCATCAGGACACTGGCACCCTTAAGTAGTTTGGTCCCTCCCAAGCCGCCACTGGGGCTGTaGGCACTGTCACTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: LLHPIRTLAPLSSLVPPKPPLGL*ALSLFF
Trigger: GAAGAAAAGTGACAGTGCCAACAGCCCCAGTGGCGG...CTTGGGAGGGACCAAACTACTTAAGGGTGCCAGTGTCCTGATGGGATGCAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp CTCTTGCTGGAGGCTGAGCCTGAGGACAGAGCCCTAGGTTACTGGGCCAAAGCAGTTAGCACCCAAATCTaGATGTTGGCCAGAGTCAAG +
Preference number: 5 (lower is better)
Translates to: LLLEAEPEDRALGYWAKAVSTQI*MLARVK
Trigger: CTTGACTCTGGCCAACATCAAGATTTGGGTGCTAAC...TGCTTTGGCCCAGTAACCTAGGGCTCTGTCCTCAGGCTCAGCCTCCAGCAAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp CTTCTGCATCCCATCAGGACACTGGCACCCTTAAGTAGTTTGGTCCCTCCCAAGAACCAGTTCCACCACTaGTGCCTTCTGCAGGGGTGT +
Preference number: 5 (lower is better)
Translates to: LLHPIRTLAPLSSLVPPKNQFHH*CLLQGC
Trigger: ACACCCCTGCAGAAGGCACAAGTGGTGGAACTGGTT...CTTGGGAGGGACCAAACTACTTAAGGGTGCCAGTGTCCTGATGGGATGCAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACCTGGTAGTCTGCCAGTaGGGTGCCATCATCCCGAGT +
Preference number: 5 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNLVVCQ*GAIIPS
Trigger: ACTCGGGATGATGGCACCCAACTGGCAGACTACCAG...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS TCA 90 bp AGGAGAGGAGACGGAAGAACTCGTGCGTGTGTGGGTCCCCCATCTTaGCGGCCTCCAAGAGACTCGAGTCCCAAAACAAGAATTTCTTGT +
Preference number: 5 (lower is better)
Translates to: RRGDGRTRACVGPPS*RPPRDSSPKTRISC
Trigger: ACAAGAAATTCTTGTTTTGGGACTCGAGTCTCTTGGAGGCCGTCAAGATGGGGGACCCACACACGCACGAGTTCTTCCGTCTCCTCTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp AGCAGGACTTTGGAGATCCAAGAACCCGTATGTGTGCCCTGGGGAGGCCACAGCAATTTGTCCAGCTTGTaGTTGGGTGGTTCGCAGATT +
Preference number: 5 (lower is better)
Translates to: SRTLEIQEPVCVPWGGHSNLSSL*LGGSQI
Trigger: AATCTGCGAACCACCCAACAACAAGCTGGACAAATT...GCTGTGGCCTCCCCAGGGCACACATACGGGTTCTTGGATCTCCAAAGTCCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp CTGCTGAAGCTTGTCCTCAATGGCCGTGGCACCCAGCAGCATCATGTCACTCTCATGACTGACATCCGCTaGCGAATGTTGTTGAAGTCC +
Preference number: 5 (lower is better)
Translates to: LLKLVLNGRGTQQHHVTLMTDIR*RMLLKS
Trigger: GGACTTCAACAACATTCGCAAGCGGATGTCAGTCAT...GAGAGTGACATGATGCTGCTGGGTGCCACGGCCATTGAGGACAAGCTTCAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
CDS-3UTR CAA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACGCCTGTCTAGCAGGATaGTGTCAGCCCCTTTGCAGT +
Preference number: 5 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNACLAG*CQPLCS
Trigger: ACTGCAAAGGGGCTGACACAATCCTGCTAGACAGGC...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATCAGCAGATGACAGCTTaGCAGGCACATGCTGTCTCC +
Preference number: 5 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNQQMTA*QAHAVS
Trigger: GGAGACAGCATGTGCCTGCAAAGCTGTCATCTGCTG...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TGTCCTCAATGGCCGTGGCACCCAGCAGCATCATGTCACTCTCAACCTCTTCATATCCGCTTGCGAATGTaGTTGAAGTCCAAGATGGCC +
Preference number: 5 (lower is better)
Translates to: CPQWPWHPAASCHSQPLHIRLRM*LKSKMA
Trigger: GGCCATCTTGGACTTCAACAACATTCGCAAGCGGAT...ATGAAGAGGTTGAGAGTGACATGATGCTGCTGGGTGCCACGGCCATTGAGGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170739.2
CDS-3UTR CAA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTAACCAGTTCCACCACTaGTGCCTTCTGCAGGGGTGT +
Preference number: 5 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLNQFHH*CLLQGC
Trigger: ACACCCCTGCAGAAGGCACAAGTGGTGGAACTGGTT...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp GCCCCAGCAGGTCTCTGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAACTAAGCCGCATGTTCTaGCCAGACATAATGAGCTCC +
Preference number: 5 (lower is better)
Translates to: APAGLWLPGVIHSCVIQELSRMF*PDIMSS
Trigger: GGAGCTCATTATGTCTGGCAAGAACATGCGGCTTAG...TTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCAGAGACCTGCTGGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp CTTCTGCATCCCATCAGGACACTGGCACCCTTAAGTAGTTTGGTCCCTCCCAAGCTAAGCCGCATGTTCTaGCCAGACATAATGAGCTCC +
Preference number: 5 (lower is better)
Translates to: LLHPIRTLAPLSSLVPPKLSRMF*PDIMSS
Trigger: GGAGCTCATTATGTCTGGCAAGAACATGCGGCTTAG...CTTGGGAGGGACCAAACTACTTAAGGGTGCCAGTGTCCTGATGGGATGCAGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS CCA 90 bp CTTCCAGTACAGAGTCCCACTGAATTTGTCCAGCTTGTTGTTGGGTaGTTCGCAGATTACTTCGCCATCAAACCTGGCCAGCTGACTGAC +
Preference number: 5 (lower is better)
Translates to: LPVQSPTEFVQLVVG*FADYFAIKPGQLTD
Trigger: GTCAGTCAGCTGGCCAGGTTTGATGGCGAAGTAATCTGCGAACCACCCAACAACAAGCTGGACAAATTCAGTGGGACTCTGTACTGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CCA 90 bp CACCACTCAGTGTTTCTCAGCACACAACCTCTCAGCAGCATGTTCTaGTTGCTCAGGGGGAACTTGTTTTCCTTCCAGTACAGAGTCCCA +
Preference number: 5 (lower is better)
Translates to: HHSVFLSTQPLSSMF*LLRGNLFSFQYRVP
Trigger: TGGGACTCTGTACTGGAAGGAAAACAAGTTCCCCCTGAGCAACCAGAACATGCTGCTGAGAGGTTGTGTGCTGAGAAACACTGAGTGGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CCA 90 bp GCGATGCAGATGAAGAACTCTCGCTTGTTGAATAGGAGGTTCAACTaGCCTGGCTCGTACAGTTTAGGGTACTCCATGCTTCGCTGTTCC +
Preference number: 5 (lower is better)
Translates to: AMQMKNSRLLNRRFN*PGSYSLGYSMLRCS
Trigger: GGAACAGCGAAGCATGGAGTACCCTAAACTGTACGAGCCAGGCCAGTTGAACCTCCTATTCAACAAGCGAGAGTTCTTCATCTGCATCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTTGGCGCACTTTCATGTaGGTCTCTCCATCCAGCTCT +
Preference number: 5 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLWRTFM*VSPSSS
Trigger: AGAGCTGGATGGAGAGACCAACATGAAAGTGCGCCA...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACATCCGCTTGCGAATGTaGTTGAAGTCCAAGATGGCC +
Preference number: 5 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNIRLRM*LKSKMA
Trigger: GGCCATCTTGGACTTCAACAACATTCGCAAGCGGAT...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGGCCAGGCTGTGCCCGTaGATGACCAAGGCGTACTCC +
Preference number: 5 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMARLCP*MTKAYS
Trigger: GGAGTACGCCTTGGTCATCAACGGGCACAGCCTGGC...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp CTTCTGCATCCCATCAGGACACTGGCACCCTTAAGTAGTTTGGTCCCTCCCAAGCAAACCGGAACTGGTTaGGGAACATGTCAAAGAGTC +
Preference number: 5 (lower is better)
Translates to: LLHPIRTLAPLSSLVPPKQTGTG*GTCQRV
Trigger: GACTCTTTGACATGTTCCCAAACCAGTTCCGGTTTG...CTTGGGAGGGACCAAACTACTTAAGGGTGCCAGTGTCCTGATGGGATGCAGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS TCA 90 bp GGTTGCTCAGGGGGAACTTGTTTTCCTTCCAGTACAGAGTCCCACTaGATTTGTCCAGCTTGTTGTTGGGTGGTTCGCAGATTACTTCGC +
Preference number: 5 (lower is better)
Translates to: GCSGGTCFPSSTESH*ICPACCWVVRRLLR
Trigger: GCGAAGTAATCTGCGAACCACCCAACAACAAGCTGGACAAATTCAGTGGGACTCTGTACTGGAAGGAAAACAAGTTCCCCCTGAGCAACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS-3UTR CAA 90 bp CTTCTGCATCCCATCAGGACACTGGCACCCTTAAGTAGTTTGGTCCCTCCCAAGTTGTACTTGGAGGTCTaGATGCAGTTACTCGCATAC +
Preference number: 5 (lower is better)
Translates to: LLHPIRTLAPLSSLVPPKLYLEV*MQLLAY
Trigger: GTATGCGAGTAACTGCATCAAGACCTCCAAGTACAA...CTTGGGAGGGACCAAACTACTTAAGGGTGCCAGTGTCCTGATGGGATGCAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTATCCGCTTGCGAATGTaGTTGAAGTCCAAGATGGCC +
Preference number: 5 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLIRLRM*LKSKMA
Trigger: GGCCATCTTGGACTTCAACAACATTCGCAAGCGGAT...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATATGACTGACATCCGCTaGCGAATGTTGTTGAAGTCC +
Preference number: 5 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNMTDIR*RMLLKS
Trigger: GGACTTCAACAACATTCGCAAGCGGATGTCAGTCAT...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTACCCAAATCTTGATGTaGGCCAGAGTCAAGAGGGCA +
Preference number: 5 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLTQILM*ARVKRA
Trigger: TGCCCTCTTGACTCTGGCCAACATCAAGATTTGGGT...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACGTTAGCACCCAAATCTaGATGTTGGCCAGAGTCAAG +
Preference number: 5 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNVSTQI*MLARVK
Trigger: CTTGACTCTGGCCAACATCAAGATTTGGGTGCTAAC...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATGTTAGCACCCAAATCTaGATGTTGGCCAGAGTCAAG +
Preference number: 5 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNVSTQI*MLARVK
Trigger: CTTGACTCTGGCCAACATCAAGATTTGGGTGCTAAC...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp AGAGTTAAGACACTAACCACAACACAAAGTCACACGAAGGCCTCCTCCACTTACCAGCAGATGACAGCTTaGCAGGCACATGCTGTCTCC +
Preference number: 5 (lower is better)
Translates to: RVKTLTTTQSHTKASSTYQQMTA*QAHAVS
Trigger: GGAGACAGCATGTGCCTGCAAAGCTGTCATCTGCTG...GTAAGTGGAGGAGGCCTTCGTGTGACTTTGTGTTGTGGTTAGTGTCTTAACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACATGTCAAAGAGTCCATaGCTGTGCATGGCAAAGAGG +
Preference number: 5 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNMSKSP*LCMAKR
Trigger: CCTCTTTGCCATGCACAGCAATGGACTCTTTGACAT...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATCAAACCGGAACTGGTTaGGGAACATGTCAAAGAGTC +
Preference number: 5 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNQTGTG*GTCQRV
Trigger: GACTCTTTGACATGTTCCCAAACCAGTTCCGGTTTG...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp AAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTACCCCGCCACTGGGGCTGTaGGCACTGTCACTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: KRKRFLWKRQVTTSSICTPPLGL*ALSLFF
Trigger: GAAGAAAAGTGACAGTGCCAACAGCCCCAGTGGCGG...GGTACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp GCCCCAGCAGGTCTCTGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAAAGGAAGGTGACAATATaGTACTTGGAGGTCTTGATG +
Preference number: 5 (lower is better)
Translates to: APAGLWLPGVIHSCVIQERKVTI*YLEVLM
Trigger: CATCAAGACCTCCAAGTACAATATTGTCACCTTCCT...TTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCAGAGACCTGCTGGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTTCTCCCAATTCAGCTTaGTGCCCCAAGACATCAAAC +
Preference number: 5 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLSPNSA*CPKTSN
Trigger: GTTTGATGTCTTGGGGCACAAAGCTGAATTGGGAGA...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp CTTCCTCCTTACTCTGCTGCTAGCAAACAAGAGGAAGAGATTCCTCTGGAAGCGTCTCCCAATTCAGCTTaGTGCCCCAAGACATCAAAC +
Preference number: 5 (lower is better)
Translates to: LPPYSAASKQEEEIPLEASPNSA*CPKTSN
Trigger: GTTTGATGTCTTGGGGCACAAAGCTGAATTGGGAGA...CGCTTCCAGAGGAATCTCTTCCTCTTGTTTGCTAGCAGCAGAGTAAGGAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp AAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTACCCAGCAGATGACAGCTTaGCAGGCACATGCTGTCTCC +
Preference number: 5 (lower is better)
Translates to: KRKRFLWKRQVTTSSICTQQMTA*QAHAVS
Trigger: GGAGACAGCATGTGCCTGCAAAGCTGTCATCTGCTG...GGTACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTCTGGTAGTCTGCCAGTaGGGTGCCATCATCCCGAGT +
Preference number: 5 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICLVVCQ*GAIIPS
Trigger: ACTCGGGATGATGGCACCCAACTGGCAGACTACCAG...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTTTGTACTTGGAGGTCTaGATGCAGTTACTCGCATAC +
Preference number: 5 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLLYLEV*MQLLAY
Trigger: GTATGCGAGTAACTGCATCAAGACCTCCAAGTACAA...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TGGCTTCCCGGCGTGATACATTCTTGTGTAATTCAGGAACAAGGGCGCAAGGGCGTGACAATATTGTACTaGGAGGTCTTGATGCAGTTA +
Preference number: 5 (lower is better)
Translates to: WLPGVIHSCVIQEQGRKGVTILY*EVLMQL
Trigger: TAACTGCATCAAGACCTCCAAGTACAATATTGTCAC...GCCCTTGCGCCCTTGTTCCTGAATTACACAAGAATGTATCACGCCGGGAAGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACAGGAAGGTGACAATATaGTACTTGGAGGTCTTGATG +
Preference number: 5 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNRKVTI*YLEVLM
Trigger: CATCAAGACCTCCAAGTACAATATTGTCACCTTCCT...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTATTCATCCACTGCTCTaGTTGGAGGACTCCATTGAT +
Preference number: 5 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLIHPLL*LEDSID
Trigger: ATCAATGGAGTCCTCCAACAAGAGCAGTGGATGAAT...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp CTTCCTCCTTACTCTGCTGCTAGCAAACAAGAGGAAGAGATTCCTCTGGAAGCGATTCATCCACTGCTCTaGTTGGAGGACTCCATTGAT +
Preference number: 5 (lower is better)
Translates to: LPPYSAASKQEEEIPLEAIHPLL*LEDSID
Trigger: ATCAATGGAGTCCTCCAACAAGAGCAGTGGATGAAT...CGCTTCCAGAGGAATCTCTTCCTCTTGTTTGCTAGCAGCAGAGTAAGGAGGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp CTTCCTCCTTACTCTGCTGCTAGCAAACAAGAGGAAGAGATTCCTCTGGAAGCGAATTTGTCCAGCTTGTaGTTGGGTGGTTCGCAGATT +
Preference number: 5 (lower is better)
Translates to: LPPYSAASKQEEEIPLEANLSSL*LGGSQI
Trigger: AATCTGCGAACCACCCAACAACAAGCTGGACAAATT...CGCTTCCAGAGGAATCTCTTCCTCTTGTTTGCTAGCAGCAGAGTAAGGAGGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTAACCAGTTCCACCACTaGTGCCTTCTGCAGGGGTGT +
Preference number: 5 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICNQFHH*CLLQGC
Trigger: ACACCCCTGCAGAAGGCACAAGTGGTGGAACTGGTT...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp GTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTGAACATGAAGAACTCTCGCTaGTTGAATAGGAGGTTCAAC +
Preference number: 5 (lower is better)
Translates to: VFLVPHLVPHCGPIQGLNMKNSR*LNRRFN
Trigger: GTTGAACCTCCTATTCAACAAGCGAGAGTTCTTCAT...GTTCAAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CCA 90 bp CTCCAAGAGACTCGAGTCCCAAAACAAGAATTTCTTGTCAGCCAGTaGATTAAAGGAGAAGTCAACAGGCTCTGGTCTCTCTCCCAATTC +
Preference number: 5 (lower is better)
Translates to: LQETRVPKQEFLVSQ*IKGEVNRLWSLSQF
Trigger: GAATTGGGAGAGAGACCAGAGCCTGTTGACTTCTCCTTTAATCCACTGGCTGACAAGAAATTCTTGTTTTGGGACTCGAGTCTCTTGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTTGGCGCACTTTCATGTaGGTCTCTCCATCCAGCTCT +
Preference number: 5 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICWRTFM*VSPSSS
Trigger: AGAGCTGGATGGAGAGACCAACATGAAAGTGCGCCA...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp AGAGTTAAGACACTAACCACAACACAAAGTCACACGAAGGCCTCCTCCACTTACAGAGTCCCACTGAATTaGTCCAGCTTGTTGTTGGGT +
Preference number: 5 (lower is better)
Translates to: RVKTLTTTQSHTKASSTYRVPLN*SSLLLG
Trigger: ACCCAACAACAAGCTGGACAAATTCAGTGGGACTCT...GTAAGTGGAGGAGGCCTTCGTGTGACTTTGTGTTGTGGTTAGTGTCTTAACTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTTTGATGGAGCATTTGTaGAACACCATGATGTTCTGG +
Preference number: 5 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLLMEHL*NTMMFW
Trigger: CCAGAACATCATGGTGTTCAACAAATGCTCCATCAA...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp CTTCTGCATCCCATCAGGACACTGGCACCCTTAAGTAGTTTGGTCCCTCCCAAGCAAAACAAGAATTTCTaGTCAGCCAGTGGATTAAAG +
Preference number: 5 (lower is better)
Translates to: LLHPIRTLAPLSSLVPPKQNKNF*SASGLK
Trigger: CTTTAATCCACTGGCTGACAAGAAATTCTTGTTTTG...CTTGGGAGGGACCAAACTACTTAAGGGTGCCAGTGTCCTGATGGGATGCAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp TCATGTGTTTTTGGTTCCACATCTTGTCCCTCACTGTGGCCCCATCCAAGGCTTATGAAGAACTCTCGCTaGTTGAATAGGAGGTTCAAC +
Preference number: 5 (lower is better)
Translates to: SCVFGSTSCPSLWPHPRLMKNSR*LNRRFN
Trigger: GTTGAACCTCCTATTCAACAAGCGAGAGTTCTTCAT...AAGCCTTGGATGGGGCCACAGTGAGGGACAAGATGTGGAACCAAAAACACATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp TATGGAGATTATAGTCTCCCTGTGGACTCCAAGCAGGACAGGGCTGGACCCAATCAAAACAAGAATTTCTaGTCAGCCAGTGGATTAAAG +
Preference number: 5 (lower is better)
Translates to: YGDYSLPVDSKQDRAGPNQNKNF*SASGLK
Trigger: CTTTAATCCACTGGCTGACAAGAAATTCTTGTTTTG...ATTGGGTCCAGCCCTGTCCTGCTTGGAGTCCACAGGGAGACTATAATCTCCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS-3UTR CAA 90 bp AGAGTTAAGACACTAACCACAACACAAAGTCACACGAAGGCCTCCTCCACTTACAGGAAGGTGACAATATaGTACTTGGAGGTCTTGATG +
Preference number: 5 (lower is better)
Translates to: RVKTLTTTQSHTKASSTYRKVTI*YLEVLM
Trigger: CATCAAGACCTCCAAGTACAATATTGTCACCTTCCT...GTAAGTGGAGGAGGCCTTCGTGTGACTTTGTGTTGTGGTTAGTGTCTTAACTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp AAGTTGGAAGTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACCTGAATTTGTCCAGCTaGTTGTTGGGTGGTTCGCAG +
Preference number: 5 (lower is better)
Translates to: KLEVSTLRNWGLNSESKNLNLSS*LLGGSQ
Trigger: CTGCGAACCACCCAACAACAAGCTGGACAAATTCAG...GTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCACTTCCAACTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp GTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACCCTATTTCCAGAGTCCCACTGAATTaGTCCAGCTTGTTGTTGGGT +
Preference number: 5 (lower is better)
Translates to: VSTLRNWGLNSESKNPISRVPLN*SSLLLG
Trigger: ACCCAACAACAAGCTGGACAAATTCAGTGGGACTCT...GGAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp AAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTACCCCGTTGATGGAGCATTaGTTGAACACCATGATGTTC +
Preference number: 5 (lower is better)
Translates to: KRKRFLWKRQVTTSSICTPLMEH*LNTMMF
Trigger: GAACATCATGGTGTTCAACAAATGCTCCATCAACGG...GGTACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp GTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACCCTATTTCCATGACTGACATCCGCTaGCGAATGTTGTTGAAGTCC +
Preference number: 5 (lower is better)
Translates to: VSTLRNWGLNSESKNPISMTDIR*RMLLKS
Trigger: GGACTTCAACAACATTCGCAAGCGGATGTCAGTCAT...GGAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp AGAGTTAAGACACTAACCACAACACAAAGTCACACGAAGGCCTCCTCCACTTACATGAAGAACTCTCGCTaGTTGAATAGGAGGTTCAAC +
Preference number: 5 (lower is better)
Translates to: RVKTLTTTQSHTKASSTYMKNSR*LNRRFN
Trigger: GTTGAACCTCCTATTCAACAAGCGAGAGTTCTTCAT...GTAAGTGGAGGAGGCCTTCGTGTGACTTTGTGTTGTGGTTAGTGTCTTAACTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp GTGAGTACGCTAAGGAATTGGGGACTCAATTCAGAATCCAAAAACCCTATTTCCATGTCAAAGAGTCCATaGCTGTGCATGGCAAAGAGG +
Preference number: 5 (lower is better)
Translates to: VSTLRNWGLNSESKNPISMSKSP*LCMAKR
Trigger: CCTCTTTGCCATGCACAGCAATGGACTCTTTGACAT...GGAAATAGGGTTTTTGGATTCTGAATTGAGTCCCCAATTCCTTAGCGTACTCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTATGTCAAAGAGTCCATaGCTGTGCATGGCAAAGAGG +
Preference number: 5 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICMSKSP*LCMAKR
Trigger: CCTCTTTGCCATGCACAGCAATGGACTCTTTGACAT...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp AACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTTTGATGGAGCATTTGTaGAACACCATGATGTTCTGG +
Preference number: 5 (lower is better)
Translates to: NKRKRFLWKRQVTTSSICLMEHL*NTMMFW
Trigger: CCAGAACATCATGGTGTTCAACAAATGCTCCATCAA...ACATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGTTGATGGAGCATTTGTaGAACACCATGATGTTCTGG +
Preference number: 5 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMLMEHL*NTMMFW
Trigger: CCAGAACATCATGGTGTTCAACAAATGCTCCATCAA...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS-3UTR CAA 90 bp AAACAAGAGGAAGAGATTCCTCTGGAAGCGACAGGTAACAACAAGCTCAATATGCAAAACAAGAATTTCTaGTCAGCCAGTGGATTAAAG +
Preference number: 5 (lower is better)
Translates to: KQEEEIPLEATGNNKLNMQNKNF*SASGLK
Trigger: CTTTAATCCACTGGCTGACAAGAAATTCTTGTTTTG...CATATTGAGCTTGTTGTTACCTGTCGCTTCCAGAGGAATCTCTTCCTCTTGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
CDS GCA 72 bp GATGAGAGAAGGCATAGCCAGAGCGCCGAGAGCCTGTaGGGCCCACTCGCCGCATGCAGCGGTGCTGCGCCT +
Preference number: 6 (lower is better)
Translates to: DERRHSQSAESL*GPLAACSGAAP
Trigger: AGGCGCAGCACCGCTGCATGCGGCGAGTGGGCCGCACAGGCTCTCGGCGCTCTGGCTATGCCTTCTCTCATC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000166502.2
ENSMUST00000168276.8
CDS CCA 72 bp GCCGTGGTGAGCGCGATGGTGAGCCACACGGTGGGCTaGGCCAGGGTGTTCTGGGCATTCCCCACAAACCGG +
Preference number: 6 (lower is better)
Translates to: AVVSAMVSHTVG*ARVFWAFPTNR
Trigger: CCGGTTTGTGGGGAATGCCCAGAACACCCTGGCCCAGCCCACCGTGTGGCTCACCATCGCGCTCACCACGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS GCA 72 bp CGAGAGCCTGTGCGGCCCACTCGCCGCATGCAGCGGTaGTGCGCCTTCTGCTTCTTCCTTACCAGCTGGGTG +
Preference number: 6 (lower is better)
Translates to: REPVRPTRRMQR*CAFCFFLTSWV
Trigger: CACCCAGCTGGTAAGGAAGAAGCAGAAGGCGCAGCACCGCTGCATGCGGCGAGTGGGCCGCACAGGCTCTCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000166502.2
ENSMUST00000168276.8
CDS GCA 72 bp CAGAGCGCCGAGAGCCTGTGCGGCCCACTCGCCGCATaGAGCGGTGCTGCGCCTTCTGCTTCTTCCTTACCA +
Preference number: 6 (lower is better)
Translates to: QSAESLCGPLAA*SGAAPSASSLP
Trigger: TGGTAAGGAAGAAGCAGAAGGCGCAGCACCGCTGCATGCGGCGAGTGGGCCGCACAGGCTCTCGGCGCTCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000166502.2
ENSMUST00000168276.8
CDS CCA 72 bp CTCCGCTCTTCTTCTGTCCCCCAAGAAGGCTTCTTCTaGCTCCAAGAGGGAGGTGCCCCGGCCCGGGCCCAC +
Preference number: 6 (lower is better)
Translates to: LRSSSVPQEGFF*LQEGGAPARAH
Trigger: GTGGGCCCGGGCCGGGGCACCTCCCTCTTGGAGCCAGAAGAAGCCTTCTTGGGGGACAGAAGAAGAGCGGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000171422.2
CDS GCA 72 bp CCCCCAAGAAGGCTTCTTCTGGCTCCAAGAGGGAGGTaGCCCGGCCCGGGCCCACTTCTCGGGTATCTCCTT +
Preference number: 6 (lower is better)
Translates to: PPRRLLLAPRGR*PGPGPLLGYLL
Trigger: AAGGAGATACCCGAGAAGTGGGCCCGGGCCGGGGCACCTCCCTCTTGGAGCCAGAAGAAGCCTTCTTGGGGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000069805.14
ENSMUST00000171422.2
CDS GCA 72 bp CGCCACTGGGGCTGTTGGCACTGTCACTTTTCTTCCTaGGCAGGCTCTCGATCCAGCTGGAGCTGGAGCGCG +
Preference number: 6 (lower is better)
Translates to: RHWGCWHCHFSS*AGSRSSWSWSA
Trigger: CGCGCTCCAGCTCCAGCTGGATCGAGAGCCTGCGCAGGAAGAAAAGTGACAGTGCCAACAGCCCCAGTGGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CCA 72 bp CGGTCTCTATGTAACACAGCCCGTGGGGTTCGCTGCTaGAAAGGAGGAGGAGGTCCGCCGCCACAAACTGGT +
Preference number: 6 (lower is better)
Translates to: RSLCNTARGVRC*KGGGGPPPQTG
Trigger: ACCAGTTTGTGGCGGCGGACCTCCTCCTCCTTTCCAGCAGCGAACCCCACGGGCTGTGTTACATAGAGACCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS GCA 72 bp AGCTCCATATCAGCCTCCAAGGCATGGGCCAGGCTGTaGCCGTTGATGACCAAGGCGTACTCCCCAGCAACA +
Preference number: 6 (lower is better)
Translates to: SSISASKAWARL*PLMTKAYSPAT
Trigger: TGTTGCTGGGGAGTACGCCTTGGTCATCAACGGGCACAGCCTGGCCCATGCCTTGGAGGCTGATATGGAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000171941.2
CDS CCA 72 bp TTAGGGTACTCCATGCTTCGCTGTTCCGGGACATCCTaGTCAAAGACGCCCATGGCTAGGACGGGGAGGGAG +
Preference number: 6 (lower is better)
Translates to: LGYSMLRCSGTS*SKTPMARTGRE
Trigger: CTCCCTCCCCGTCCTAGCCATGGGCGTCTTTGACCAGGATGTCCCGGAACAGCGAAGCATGGAGTACCCTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CAA 90 bp TCTAGCTCCATATCAGCCTCCAAGGCATGGGCCAGGCTGTGCCCGTaGATGACCAAGGCGTACTCCCCAGCAACAGCCTCCAGGACAGAA +
Preference number: 6 (lower is better)
Translates to: SSSISASKAWARLCP*MTKAYSPATASRTE
Trigger: TTCTGTCCTGGAGGCTGTTGCTGGGGAGTACGCCTTGGTCATCAACGGGCACAGCCTGGCCCATGCCTTGGAGGCTGATATGGAGCTAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000171941.2
CDS CCA 72 bp GCGTCCCAACTTCGTGCTCCCAGATGGCATTACCGATaGCCAGGATCACCCCCATGCAAACCAGGAACCCAA +
Preference number: 6 (lower is better)
Translates to: ASQLRAPRWHYR*PGSPPCKPGTQ
Trigger: TTGGGTTCCTGGTTTGCATGGGGGTGATCCTGGCCATCGGTAATGCCATCTGGGAGCACGAAGTTGGGACGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CCA 72 bp AGACCTGGAAGCGCGTCCCAACTTCGTGCTCCCAGATaGCATTACCGATGGCCAGGATCACCCCCATGCAAA +
Preference number: 6 (lower is better)
Translates to: RPGSASQLRAPR*HYRWPGSPPCK
Trigger: TTTGCATGGGGGTGATCCTGGCCATCGGTAATGCCATCTGGGAGCACGAAGTTGGGACGCGCTTCCAGGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CCA 72 bp ACACAAGGAGAGGAGACGGAAGAACTCGTGCGTGTGTaGGTCCCCCATCTTGACGGCCTCCAAGAGACTCGA +
Preference number: 6 (lower is better)
Translates to: TQGEETEELVRV*VPHLDGLQETR
Trigger: TCGAGTCTCTTGGAGGCCGTCAAGATGGGGGACCCACACACGCACGAGTTCTTCCGTCTCCTCTCCTTGTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS TCA 72 bp GACGGAAGAACTCGTGCGTGTGTGGGTCCCCCATCTTaGCGGCCTCCAAGAGACTCGAGTCCCAAAACAAGA +
Preference number: 6 (lower is better)
Translates to: DGRTRACVGPPS*RPPRDSSPKTR
Trigger: TCTTGTTTTGGGACTCGAGTCTCTTGGAGGCCGTCAAGATGGGGGACCCACACACGCACGAGTTCTTCCGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS GCA 72 bp TTTGTAGGCCAACACCAGGGTCCTCAGCCCGTCCCCTaGATACTCATTCAGATGGTCAGTGGTGCTGCTGAG +
Preference number: 6 (lower is better)
Translates to: FVGQHQGPQPVP*ILIQMVSGAAE
Trigger: CTCAGCAGCACCACTGACCATCTGAATGAGTATGCAGGGGACGGGCTGAGGACCCTGGTGTTGGCCTACAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS GCA 72 bp GACCGCAGGACAAGCACACAGAGGAAAAGTCAAAGCTaGCAGTCTCAGCTCCTCTCGCACCTCCAGGACAGT +
Preference number: 6 (lower is better)
Translates to: DRRTSTQRKSQS*QSQLLSHLQDS
Trigger: ACTGTCCTGGAGGTGCGAGAGGAGCTGAGACTGGCAGCTTTGACTTTTCCTCTGTGTGCTTGTCCTGCGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107396.8
CDS CCA 72 bp CTGACGTCTCCCAGCTCTGAGGTGACTGGAATGGCCTaGCGCACTTTCATGTTGGTCTCTCCATCCAGCTCT +
Preference number: 6 (lower is better)
Translates to: LTSPSSEVTGMA*RTFMLVSPSSS
Trigger: AGAGCTGGATGGAGAGACCAACATGAAAGTGCGCCAGGCCATTCCAGTCACCTCAGAGCTGGGAGACGTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CCA 72 bp TCCAGAAACTCTAGCTCCATATCAGCCTCCAAGGCATaGGCCAGGCTGTGCCCGTTGATGACCAAGGCGTAC +
Preference number: 6 (lower is better)
Translates to: SRNSSSISASKA*ARLCPLMTKAY
Trigger: GTACGCCTTGGTCATCAACGGGCACAGCCTGGCCCATGCCTTGGAGGCTGATATGGAGCTAGAGTTTCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000171941.2
CDS CCA 72 bp TTCGCTGTTCCGGGACATCCTGGTCAAAGACGCCCATaGCTAGGACGGGGAGGGAGGTGTACACGATGTTAT +
Preference number: 6 (lower is better)
Translates to: FAVPGHPGQRRP*LGRGGRCTRCY
Trigger: ATAACATCGTGTACACCTCCCTCCCCGTCCTAGCCATGGGCGTCTTTGACCAGGATGTCCCGGAACAGCGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CAA 72 bp AGACGGAAGAACTCGTGCGTGTGTGGGTCCCCCATCTaGACGGCCTCCAAGAGACTCGAGTCCCAAAACAAG +
Preference number: 6 (lower is better)
Translates to: RRKNSCVCGSPI*TASKRLESQNK
Trigger: CTTGTTTTGGGACTCGAGTCTCTTGGAGGCCGTCAAGATGGGGGACCCACACACGCACGAGTTCTTCCGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS TCA 72 bp TGGGAGGAATCTACCATCTTCTTCCGGGCTTTCCTGTaGGGGCAGGGAAGAAACTGTGGTAGGACCGCAGGA +
Preference number: 6 (lower is better)
Translates to: WEESTIFFRAFL*GQGRNCGRTAG
Trigger: TCCTGCGGTCCTACCACAGTTTCTTCCCTGCCCTCACAGGAAAGCCCGGAAGAAGATGGTAGATTCCTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107396.8
CDS CCA 72 bp CTTGATGTTGGCCAGAGTCAAGAGGGCAATGGTCTCTaGGACTCCCTGCTGAAGCTTGTCCTCAATGGCCGT +
Preference number: 6 (lower is better)
Translates to: LDVGQSQEGNGL*DSLLKLVLNGR
Trigger: ACGGCCATTGAGGACAAGCTTCAGCAGGGAGTCCCAGAGACCATTGCCCTCTTGACTCTGGCCAACATCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CCA 72 bp GCCAGGGTGTTCTGGGCATTCCCCACAAACCGGAACTaGTTTGGGAACATGTCAAAGAGTCCATTGCTGTGC +
Preference number: 6 (lower is better)
Translates to: ARVFWAFPTNRN*FGNMSKSPLLC
Trigger: GCACAGCAATGGACTCTTTGACATGTTCCCAAACCAGTTCCGGTTTGTGGGGAATGCCCAGAACACCCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CAA 72 bp CAGCTGGGTGTAGCGGACCCACAAACCGGAACTGGTTaGGGAACATGTCAAAGAGTCCATTGCTGTGCATGG +
Preference number: 6 (lower is better)
Translates to: QLGVADPQTGTG*GTCQRVHCCAW
Trigger: CCATGCACAGCAATGGACTCTTTGACATGTTCCCAAACCAGTTCCGGTTTGTGGGTCCGCTACACCCAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS CAA 90 bp AAGGAGAGGAGACGGAAGAACTCGTGCGTGTGTGGGTCCCCCATCTaGACGGCCTCCAAGAGACTCGAGTCCCAAAACAAGAATTTCTTG +
Preference number: 6 (lower is better)
Translates to: KERRRKNSCVCGSPI*TASKRLESQNKNFL
Trigger: CAAGAAATTCTTGTTTTGGGACTCGAGTCTCTTGGAGGCCGTCAAGATGGGGGACCCACACACGCACGAGTTCTTCCGTCTCCTCTCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CCA 72 bp GGTGTTCTGGGCATTCCCCACAAACCGGAACTGGTTTaGGAACATGTCAAAGAGTCCATTGCTGTGCATGGC +
Preference number: 6 (lower is better)
Translates to: GVLGIPHKPELV*EHVKESIAVHG
Trigger: GCCATGCACAGCAATGGACTCTTTGACATGTTCCCAAACCAGTTCCGGTTTGTGGGGAATGCCCAGAACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CCA 72 bp TTACCAGCTGGGTGTAGCGGACCCACAAACCGGAACTaGTTTGGGAACATGTCAAAGAGTCCATTGCTGTGC +
Preference number: 6 (lower is better)
Translates to: LPAGCSGPTNRN*FGNMSKSPLLC
Trigger: GCACAGCAATGGACTCTTTGACATGTTCCCAAACCAGTTCCGGTTTGTGGGTCCGCTACACCCAGCTGGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS CAA 72 bp ATGCCCTGGGCGATGCAGATGAAGAACTCTCGCTTGTaGAATAGGAGGTTCAACTGGCCTGGCTCGTACAGT +
Preference number: 6 (lower is better)
Translates to: MPWAMQMKNSRL*NRRFNWPGSYS
Trigger: ACTGTACGAGCCAGGCCAGTTGAACCTCCTATTCAACAAGCGAGAGTTCTTCATCTGCATCGCCCAGGGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CAA 72 bp GGGTGTTCTGGGCATTCCCCACAAACCGGAACTGGTTaGGGAACATGTCAAAGAGTCCATTGCTGTGCATGG +
Preference number: 6 (lower is better)
Translates to: GCSGHSPQTGTG*GTCQRVHCCAW
Trigger: CCATGCACAGCAATGGACTCTTTGACATGTTCCCAAACCAGTTCCGGTTTGTGGGGAATGCCCAGAACACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CAA 90 bp CTTCCTTACCAGCTGGGTGTAGCGGACCCACAAACCGGAACTGGTTaGGGAACATGTCAAAGAGTCCATTGCTGTGCATGGCAAAGAGGA +
Preference number: 6 (lower is better)
Translates to: LPYQLGVADPQTGTG*GTCQRVHCCAWQRG
Trigger: TCCTCTTTGCCATGCACAGCAATGGACTCTTTGACATGTTCCCAAACCAGTTCCGGTTTGTGGGTCCGCTACACCCAGCTGGTAAGGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166502.2
CDS TCA 72 bp GTGGCCCAAGCGGATGACTTCCACACTGACGTACAGTaGGATGGGCACAACGGTGTTGAGGATGATGATATA +
Preference number: 6 (lower is better)
Translates to: VAQADDFHTDVQ*DGHNGVEDDDI
Trigger: TATATCATCATCCTCAACACCGTTGTGCCCATCTCACTGTACGTCAGTGTGGAAGTCATCCGCTTGGGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CCA 72 bp CAGAGTCCCACTGAATTTGTCCAGCTTGTTGTTGGGTaGTTCGCAGATTACTTCGCCATCAAACCTGGCCAG +
Preference number: 6 (lower is better)
Translates to: QSPTEFVQLVVG*FADYFAIKPGQ
Trigger: CTGGCCAGGTTTGATGGCGAAGTAATCTGCGAACCACCCAACAACAAGCTGGACAAATTCAGTGGGACTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CCA 72 bp GGTTTGGGAACATGTCAAAGAGTCCATTGCTGTGCATaGCAAAGAGGATGGCGAAGTACACTGCAAGGCTGC +
Preference number: 6 (lower is better)
Translates to: GLGTCQRVHCCA*QRGWRSTLQGC
Trigger: GCAGCCTTGCAGTGTACTTCGCCATCCTCTTTGCCATGCACAGCAATGGACTCTTTGACATGTTCCCAAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000166502.2
ENSMUST00000168276.8
CDS CAA 72 bp CACTGCCTTCTTGTACTTCTTAACCAGTTCCACCACTaGTGCCTTCTGCAGGGGTGTCACTCGACAGCAGAT +
Preference number: 6 (lower is better)
Translates to: HCLLVLLNQFHH*CLLQGCHSTAD
Trigger: ATCTGCTGTCGAGTGACACCCCTGCAGAAGGCACAAGTGGTGGAACTGGTTAAGAAGTACAAGAAGGCAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000171941.2
CDS CAA 90 bp AGCACACAACCTCTCAGCAGCATGTTCTGGTTGCTCAGGGGGAACTaGTTTTCCTTCCAGTACAGAGTCCCACTGAATTTGTCCAGCTTG +
Preference number: 6 (lower is better)
Translates to: STQPLSSMFWLLRGN*FSFQYRVPLNLSSL
Trigger: CAAGCTGGACAAATTCAGTGGGACTCTGTACTGGAAGGAAAACAAGTTCCCCCTGAGCAACCAGAACATGCTGCTGAGAGGTTGTGTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CAA 90 bp ATCCAGAGTACCAGGGTGTTCATCAGGCGGTCGATACTTGTTCTCTaGAACTTCGTCCTGCCGCTGTTCTGCATCAGCTTAGTATCAGGA +
Preference number: 6 (lower is better)
Translates to: IQSTRVFIRRSILVL*NFVLPLFCISLVSG
Trigger: TCCTGATACTAAGCTGATGCAGAACAGCGGCAGGACGAAGTTCAAGAGAACAAGTATCGACCGCCTGATGAACACCCTGGTACTCTGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS TCA 72 bp GGGGGAACTTGTTTTCCTTCCAGTACAGAGTCCCACTaGATTTGTCCAGCTTGTTGTTGGGTGGTTCGCAGA +
Preference number: 6 (lower is better)
Translates to: GGTCFPSSTESH*ICPACCWVVRR
Trigger: TCTGCGAACCACCCAACAACAAGCTGGACAAATTCAGTGGGACTCTGTACTGGAAGGAAAACAAGTTCCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CCA 72 bp GTGTTTCTCAGCACACAACCTCTCAGCAGCATGTTCTaGTTGCTCAGGGGGAACTTGTTTTCCTTCCAGTAC +
Preference number: 6 (lower is better)
Translates to: VFLSTQPLSSMF*LLRGNLFSFQY
Trigger: GTACTGGAAGGAAAACAAGTTCCCCCTGAGCAACCAGAACATGCTGCTGAGAGGTTGTGTGCTGAGAAACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CAA 90 bp TTGTTTTCCTTCCAGTACAGAGTCCCACTGAATTTGTCCAGCTTGTaGTTGGGTGGTTCGCAGATTACTTCGCCATCAAACCTGGCCAGC +
Preference number: 6 (lower is better)
Translates to: LFSFQYRVPLNLSSL*LGGSQITSPSNLAS
Trigger: GCTGGCCAGGTTTGATGGCGAAGTAATCTGCGAACCACCCAACAACAAGCTGGACAAATTCAGTGGGACTCTGTACTGGAAGGAAAACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CAA 90 bp CTCAGGGGGAACTTGTTTTCCTTCCAGTACAGAGTCCCACTGAATTaGTCCAGCTTGTTGTTGGGTGGTTCGCAGATTACTTCGCCATCA +
Preference number: 6 (lower is better)
Translates to: LRGNLFSFQYRVPLN*SSLLLGGSQITSPS
Trigger: TGATGGCGAAGTAATCTGCGAACCACCCAACAACAAGCTGGACAAATTCAGTGGGACTCTGTACTGGAAGGAAAACAAGTTCCCCCTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CAA 72 bp CAGTACAGAGTCCCACTGAATTTGTCCAGCTTGTTGTaGGGTGGTTCGCAGATTACTTCGCCATCAAACCTG +
Preference number: 6 (lower is better)
Translates to: QYRVPLNLSSLL*GGSQITSPSNL
Trigger: CAGGTTTGATGGCGAAGTAATCTGCGAACCACCCAACAACAAGCTGGACAAATTCAGTGGGACTCTGTACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CAA 72 bp TCCTTCCAGTACAGAGTCCCACTGAATTTGTCCAGCTaGTTGTTGGGTGGTTCGCAGATTACTTCGCCATCA +
Preference number: 6 (lower is better)
Translates to: SFQYRVPLNLSS*LLGGSQITSPS
Trigger: TGATGGCGAAGTAATCTGCGAACCACCCAACAACAAGCTGGACAAATTCAGTGGGACTCTGTACTGGAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CAA 90 bp AACTTGTTTTCCTTCCAGTACAGAGTCCCACTGAATTTGTCCAGCTaGTTGTTGGGTGGTTCGCAGATTACTTCGCCATCAAACCTGGCC +
Preference number: 6 (lower is better)
Translates to: NLFSFQYRVPLNLSS*LLGGSQITSPSNLA
Trigger: GGCCAGGTTTGATGGCGAAGTAATCTGCGAACCACCCAACAACAAGCTGGACAAATTCAGTGGGACTCTGTACTGGAAGGAAAACAAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CAA 90 bp ATCTTGACGGCCTCCAAGAGACTCGAGTCCCAAAACAAGAATTTCTaGTCAGCCAGTGGATTAAAGGAGAAGTCAACAGGCTCTGGTCTC +
Preference number: 6 (lower is better)
Translates to: ILTASKRLESQNKNF*SASGLKEKSTGSGL
Trigger: GAGACCAGAGCCTGTTGACTTCTCCTTTAATCCACTGGCTGACAAGAAATTCTTGTTTTGGGACTCGAGTCTCTTGGAGGCCGTCAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CCA 72 bp ATGAAGAACTCTCGCTTGTTGAATAGGAGGTTCAACTaGCCTGGCTCGTACAGTTTAGGGTACTCCATGCTT +
Preference number: 6 (lower is better)
Translates to: MKNSRLLNRRFN*PGSYSLGYSML
Trigger: AAGCATGGAGTACCCTAAACTGTACGAGCCAGGCCAGTTGAACCTCCTATTCAACAAGCGAGAGTTCTTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CAA 72 bp TTCCAGTACAGAGTCCCACTGAATTTGTCCAGCTTGTaGTTGGGTGGTTCGCAGATTACTTCGCCATCAAAC +
Preference number: 6 (lower is better)
Translates to: FQYRVPLNLSSL*LGGSQITSPSN
Trigger: GTTTGATGGCGAAGTAATCTGCGAACCACCCAACAACAAGCTGGACAAATTCAGTGGGACTCTGTACTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2
CDS CAA 72 bp GCCTCCAAGAGACTCGAGTCCCAAAACAAGAATTTCTaGTCAGCCAGTGGATTAAAGGAGAAGTCAACAGGC +
Preference number: 6 (lower is better)
Translates to: ASKRLESQNKNF*SASGLKEKSTG
Trigger: GCCTGTTGACTTCTCCTTTAATCCACTGGCTGACAAGAAATTCTTGTTTTGGGACTCGAGTCTCTTGGAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
CDS CAA 72 bp TGCTCAAAGAGGTTGACAGGCAGGAAGGTGACAATATaGTACTTGGAGGTCTTGATGCAGTTACTCGCATAC +
Preference number: 6 (lower is better)
Translates to: CSKRLTGRKVTI*YLEVLMQLLAY
Trigger: GTATGCGAGTAACTGCATCAAGACCTCCAAGTACAATATTGTCACCTTCCTGCCTGTCAACCTCTTTGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000168880.8
ENSMUST00000171422.2
CDS CAA 72 bp AACTTGTTTTCCTTCCAGTACAGAGTCCCACTGAATTaGTCCAGCTTGTTGTTGGGTGGTTCGCAGATTACT +
Preference number: 6 (lower is better)
Translates to: NLFSFQYRVPLN*SSLLLGGSQIT
Trigger: AGTAATCTGCGAACCACCCAACAACAAGCTGGACAAATTCAGTGGGACTCTGTACTGGAAGGAAAACAAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069805.14
ENSMUST00000107396.8
ENSMUST00000168276.8
ENSMUST00000170696.2