RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATP7A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033792

Ensembl transcript IDs: ENSMUST00000055941.7, ENSMUST00000113557.8

Found 340 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTCAGAGCTCCTGCCCTaGGAAAGATATTTTCACCAT +
Preference number: 2 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLSELLP*ERYFHH
Trigger: ATGGTGAAAATATCTTTCTCAGGGCAGGAGCTCTGA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
3UTR-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTCAGAGCTCCTGCCCTaGGAAAGATATTTTCACCAT +
Preference number: 2 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSELLP*ERYFHH
Trigger: ATGGTGAAAATATCTTTCTCAGGGCAGGAGCTCTGA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGATGACTTCCCCTGCCTaGGGCGTGCTGTGCTCTTCA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLMTSPA*GVLCSS
Trigger: TGAAGAGCACAGCACGCCTCAGGCAGGGGAAGTCAT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCTCCTCTGTCCTGTGTaGCTCCGGGGATGCAACTCA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLLLCPV*LRGCNS
Trigger: TGAGTTGCATCCCCGGAGCCACACAGGACAGAGGAG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTCCTCTGTCCTGTGTaGCTCCGGGGATGCAACTCA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLLLCPV*LRGCNS
Trigger: TGAGTTGCATCCCCGGAGCCACACAGGACAGAGGAG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCTGGATAGGAGCCTTTaGTGTCTGTGCCTCCTCCAC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLLDRSL*CLCLLH
Trigger: GTGGAGGAGGCACAGACATCAAAGGCTCCTATCCAG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGACTACAGAGACAGATaGAGCGGCCATTGCTGCGGA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLDYRDR*SGHCCG
Trigger: TCCGCAGCAATGGCCGCTTCATCTGTCTCTGTAGTC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGACTACAGAGACAGATaGAGCGGCCATTGCTGCGGA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLDYRDR*SGHCCG
Trigger: TCCGCAGCAATGGCCGCTTCATCTGTCTCTGTAGTC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAGTCCCTGTGCTGTTTaGGAGGGACACGTGGATGGA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSPCAV*EGHVDG
Trigger: TCCATCCACGTGTCCCTCGCAAACAGCACAGGGACT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGAGCACCTACTCCTGTaGCCACCATCACAGCAGTTG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLEHLLL*PPSQQL
Trigger: CAACTGCTGTGATGGTGGGCACAGGAGTAGGTGCTC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTCTGAAGAGATGAGCTaGAGGGAGAGCTGGCGGTAC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLSEEMS*RESWRY
Trigger: GTACCGCCAGCTCTCCCTCCAGCTCATCTCTTCAGA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTCTGAAGAGATGAGCTaGAGGGAGAGCTGGCGGTAC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSEEMS*RESWRY
Trigger: GTACCGCCAGCTCTCCCTCCAGCTCATCTCTTCAGA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGACCAGCTCCACAATCTaGCTGGCACTCACCACAGAT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLTSSTI*LALTTD
Trigger: ATCTGTGGTGAGTGCCAGTCAGATTGTGGAGCTGGT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTTCCCATGTCTAAACTaGGGTCTGGGACCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLFPCLN*GLGPAP
Trigger: TGGAGCTGGTCCCAGACCTCAGTTTAGACATGGGAA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCAGAGAGTAGGCAAATaGGATGGTGGTTGCCAGCAC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLQRVGK*DGGCQH
Trigger: GTGCTGGCAACCACCATCGCATTTGCCTACTCTCTG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGTTAATGGAACCTaGAATCACCGTGCTGCCAGG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLLVNGT*NHRAAR
Trigger: CCTGGCAGCACGGTGATTGCAGGTTCCATTAACCAG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCCATTGCTACACGTTTaGCCTCCTCTTGGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLPLLHV*PPLGAA
Trigger: AGCAGCTCCAAGAGGAGGGCAAACGTGTAGCAATGG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCCATTGCTACACGTTTaGCCTCCTCTTGGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLPLLHV*PPLGAA
Trigger: AGCAGCTCCAAGAGGAGGGCAAACGTGTAGCAATGG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGGCAATTCCAACGTTTaGCATTGCCAGAGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLGNSNV*HCQSWG
Trigger: TCCCCAGCTCTGGCAATGGCAAACGTTGGAATTGCC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGGCAATTCCAACGTTTaGCATTGCCAGAGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLGNSNV*HCQSWG
Trigger: TCCCCAGCTCTGGCAATGGCAAACGTTGGAATTGCC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAGCTGGAGGGAGAGCTaGCGGTACTTTCAACTTCAC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSWRES*RYFQLH
Trigger: GTGAAGTTGAAAGTACCGCCAGCTCTCCCTCCAGCT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAGCTGGAGGGAGAGCTaGCGGTACTTTCAACTTCAC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLSWRES*RYFQLH
Trigger: GTGAAGTTGAAAGTACCGCCAGCTCTCCCTCCAGCT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTCACAGCAGTTGGAGTaGCTAGTCCCAGTGAACAGG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLSQQLE*LVPVNR
Trigger: CCTGTTCACTGGGACTAGCCACTCCAACTGCTGTGA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTCACAGCAGTTGGAGTaGCTAGTCCCAGTGAACAGG +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSQQLE*LVPVNR
Trigger: CCTGTTCACTGGGACTAGCCACTCCAACTGCTGTGA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCGTTTGCCCTCCTCTTaGAGCTGCTTCACCTTAGCA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLRLPSS*SCFTLA
Trigger: TGCTAAGGTGAAGCAGCTCCAAGAGGAGGGCAAACG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCGTTTGCCCTCCTCTTaGAGCTGCTTCACCTTAGCA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLRLPSS*SCFTLA
Trigger: TGCTAAGGTGAAGCAGCTCCAAGAGGAGGGCAAACG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGGAGTCACTGGGATATaGTGGGCTCTTTTGCTGAGA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLGVTGI*WALLLR
Trigger: TCTCAGCAAAAGAGCCCATCATATCCCAGTGACTCC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGGAGTCACTGGGATATaGTGGGCTCTTTTGCTGAGA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLGVTGI*WALLLR
Trigger: TCTCAGCAAAAGAGCCCATCATATCCCAGTGACTCC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTCTGTATTGCCCCGGTaGAATGGCCTCTATTGCCTT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLSVLPR*NGLYCL
Trigger: AAGGCAATAGAGGCCATTTCACCGGGGCAATACAGA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAAGAGGTGTTTCCAGTaGGGGCTGAGCTATCACTAC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLKRCFQ*GLSYHY
Trigger: GTAGTGATAGCTCAGCCCTCACTGGAAACACCTCTT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAAGAGGTGTTTCCAGTaGGGGCTGAGCTATCACTAC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLKRCFQ*GLSYHY
Trigger: GTAGTGATAGCTCAGCCCTCACTGGAAACACCTCTT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCCTCCTCCACAAGTTTaGCGATCTGAGAAAGGGTTG +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLPPPQV*RSEKGL
Trigger: CAACCCTTTCTCAGATCGTCAAACTTGTGGAGGAGG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCCTCCTCCACAAGTTTaGCGATCTGAGAAAGGGTTG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLPPPQV*RSEKGL
Trigger: CAACCCTTTCTCAGATCGTCAAACTTGTGGAGGAGG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGATAAGTATGCCATTCTaGGCACCTACTCCTGTGCCC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLISMPF*APTPVP
Trigger: GGGCACAGGAGTAGGTGCTCAGAATGGCATACTTAT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGATAAGTATGCCATTCTaGGCACCTACTCCTGTGCCC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLISMPF*APTPVP
Trigger: GGGCACAGGAGTAGGTGCTCAGAATGGCATACTTAT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGGGTTCCATGGGTaGTGGTTCCAGTCTTATCAA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLLGFHG*WFQSYQ
Trigger: TTGATAAGACTGGAACCATCACCCATGGAACCCCAG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCTGGGGTTCCATGGGTaGTGGTTCCAGTCTTATCAA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLLGFHG*WFQSYQ
Trigger: TTGATAAGACTGGAACCATCACCCATGGAACCCCAG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGAGCTGGGGAGTCATTaGTTCCATCTCCTACCATTG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLELGSH*FHLLPL
Trigger: CAATGGTAGGAGATGGAATCAATGACTCCCCAGCTC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAGGCTCTGCTATAGTTaGCAATCCGGTCCAGCAAAC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLRLCYS*QSGPAN
Trigger: GTTTGCTGGACCGGATTGTCAACTATAGCAGAGCCT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAGGCTCTGCTATAGTTaGCAATCCGGTCCAGCAAAC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLRLCYS*QSGPAN
Trigger: GTTTGCTGGACCGGATTGTCAACTATAGCAGAGCCT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGCCACTGAGTTTGTCTaGAAACTGCTGGATAGGAGC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLATEFV*KLLDRS
Trigger: GCTCCTATCCAGCAGTTTGCAGACAAACTCAGTGGC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGCCACTGAGTTTGTCTaGAAACTGCTGGATAGGAGC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLATEFV*KLLDRS
Trigger: GCTCCTATCCAGCAGTTTGCAGACAAACTCAGTGGC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCCCTCCTCTTGGAGCTaGTTCACCTTAGCAACTTTG +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLPSSWS*FTLATL
Trigger: CAAAGTTGCTAAGGTGAAGCAGCTCCAAGAGGAGGG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCCCTCCTCTTGGAGCTaGTTCACCTTAGCAACTTTG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLPSSWS*FTLATL
Trigger: CAAAGTTGCTAAGGTGAAGCAGCTCCAAGAGGAGGG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCCCACCAGAAGCGAGTaGTTGTCAGGTTCACTAGTA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLPTRSE*LSGSLV
Trigger: TACTAGTGAACCTGACAAGCACTCGCTTCTGGTGGG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAGGGGGTTAGCATTGTaGAGAAGAGCATCAAAGCCC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLRGLAL*RRASKP
Trigger: GGGCTTTGATGCTCTTCTCCACAATGCTAACCCCCT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTTTGCGAGGGACACGTaGATGGATTTTACACCTGGC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLFARDT*MDFTPG
Trigger: GCCAGGTGTAAAATCCATCCACGTGTCCCTCGCAAA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAGGCAAATGCGATGGTaGTTGCCAGCACAATCAGCA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLRQMRW*LPAQSA
Trigger: TGCTGATTGTGCTGGCAACCACCATCGCATTTGCCT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAGGCAAATGCGATGGTaGTTGCCAGCACAATCAGCA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLRQMRW*LPAQSA
Trigger: TGCTGATTGTGCTGGCAACCACCATCGCATTTGCCT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAACACGGCCATCCACTaGAAATTTGCCTCCTGGAAC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLNTAIH*KFASWN
Trigger: GTTCCAGGAGGCAAATTTCCAGTGGATGGCCGTGTT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCAGCCTGGTACAACCTaGAAATCTGTACAGGTACCC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLQPGTT*KSVQVP
Trigger: GGGTACCTGTACAGATTTCCAGGTTGTACCAGGCTG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCAGCCTGGTACAACCTaGAAATCTGTACAGGTACCC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLQPGTT*KSVQVP
Trigger: GGGTACCTGTACAGATTTCCAGGTTGTACCAGGCTG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTGCCTGTGCCTATaGCAATTCCAACGTTTGCCA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLLCLCL*QFQRLP
Trigger: TGGCAAACGTTGGAATTGCCATAGGCACAGGCACAG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTCTTCACAAGCTCCTaGCTTTTTCTCCTGAGTTCC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLLFTSS*LFLLSS
Trigger: GGAACTCAGGAGAAAAAGTCAGGAGCTTGTGAAGAG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCTCTTCACAAGCTCCTaGCTTTTTCTCCTGAGTTCC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLLFTSS*LFLLSS
Trigger: GGAACTCAGGAGAAAAAGTCAGGAGCTTGTGAAGAG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAATGGTGCTAGTACATaGATGGCAGGTCATCCCTTC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLNGAST*MAGHPF
Trigger: GAAGGGATGACCTGCCATTCATGTACTAGCACCATT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGACACTTTAATGCGCTaGACACCTTGCAGCTTTCCA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLDTLMR*TPCSFP
Trigger: TGGAAAGCTGCAAGGTGTTCAGCGCATTAAAGTGTC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGACACTTTAATGCGCTaGACACCTTGCAGCTTTCCA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLDTLMR*TPCSFP
Trigger: TGGAAAGCTGCAAGGTGTTCAGCGCATTAAAGTGTC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCAATGGCTCCCAATTTaGGGTACTTCGGCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLQWLPI*GTSAAF
Trigger: AAAAGCAGCCGAAGTACCTCAAATTGGGAGCCATTG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCAATGGCTCCCAATTTaGGGTACTTCGGCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLQWLPI*GTSAAF
Trigger: AAAAGCAGCCGAAGTACCTCAAATTGGGAGCCATTG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGATCCTTCTGAAGATTTaGCCGGTGTGTTCTTCAGGC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLILLKI*PVCSSG
Trigger: GCCTGAAGAACACACCGGTCAAATCTTCAGAAGGAT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGATCCTTCTGAAGATTTaGCCGGTGTGTTCTTCAGGC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLILLKI*PVCSSG
Trigger: GCCTGAAGAACACACCGGTCAAATCTTCAGAAGGAT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGACTACCTTTACCTTATaGGCCATTTCCAGTGGCTCC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLTTFTL*AISSGS
Trigger: GGAGCCACTGGAAATGGCTCATAAGGTAAAGGTAGT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGACGAGAACCTTCACTTaGTTCACTACTGGGGTTCCA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLTRTFT*FTTGVP
Trigger: TGGAACCCCAGTAGTGAATCAAGTGAAGGTTCTCGT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGACGAGAACCTTCACTTaGTTCACTACTGGGGTTCCA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLTRTFT*FTTGVP
Trigger: TGGAACCCCAGTAGTGAATCAAGTGAAGGTTCTCGT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGATTCCCGGTTACCAATaGGGACTTTGTACTGCTGAG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLIPGYQ*GLCTAE
Trigger: CTCAGCAGTACAAAGTCCTCATTGGTAACCGGGAAT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGTGAACACTGATTTCTaGAGGACTCCTCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLVNTDF*RTPLSC
Trigger: ACAGGACAGAGGAGTCCTTCAGAAATCAGTGTTCAC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGTGAACACTGATTTCTaGAGGACTCCTCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLVNTDF*RTPLSC
Trigger: ACAGGACAGAGGAGTCCTTCAGAAATCAGTGTTCAC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGATGTGCTTTGTTAGTTaGCAGGGCCACAGAGCAGTA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLMCFVS*QGHRAV
Trigger: TACTGCTCTGTGGCCCTGGCAACTAACAAAGCACAT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGATGTGCTTTGTTAGTTaGCAGGGCCACAGAGCAGTA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLMCFVS*QGHRAV
Trigger: TACTGCTCTGTGGCCCTGGCAACTAACAAAGCACAT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAAATGCGATGGTGGTTaGCAGCACAATCAGCACATC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLKCDGG*QHNQHI
Trigger: GATGTGCTGATTGTGCTGGCAACCACCATCGCATTT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAGAAAGGGTTGTATCTaGTCCCACATGTGTTGCTCG +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLRKGCI*SHMCCS
Trigger: CGAGCAACACATGTGGGAGCAGATACAACCCTTTCT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTTCACTGTTACTTTCTaGAGTCCCCACAATGGCCAG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLFTVTF*SPHNGQ
Trigger: CTGGCCATTGTGGGGACTGCAGAAAGTAACAGTGAA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCTACATCTGTGCCTGTaGCTATGGCAATTCCAACGT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLLHLCL*LWQFQR
Trigger: ACGTTGGAATTGCCATAGGCACAGGCACAGATGTAG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTACATCTGTGCCTGTaGCTATGGCAATTCCAACGT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLLHLCL*LWQFQR
Trigger: ACGTTGGAATTGCCATAGGCACAGGCACAGATGTAG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCAATGGCTACATCTGTaGCTGTGCCTATGGCAATTC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLQWLHL*LCLWQF
Trigger: GAATTGCCATAGGCACAGGCACAGATGTAGCCATTG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCAATGGCTACATCTGTaGCTGTGCCTATGGCAATTC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLQWLHL*LCLWQF
Trigger: GAATTGCCATAGGCACAGGCACAGATGTAGCCATTG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGTGCTAGTACATGAATaGCAGGTCATCCCTTCCACT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLVLVHE*QVIPST
Trigger: AGTGGAAGGGATGACCTGCCATTCATGTACTAGCAC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGATTGCCCCGGTGAAATaGCCTCTATTGCCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLIAPVK*PLLPFS
Trigger: TGAGAAAGGCAATAGAGGCCATTTCACCGGGGCAAT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGATTGCCCCGGTGAAATaGCCTCTATTGCCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLIAPVK*PLLPFS
Trigger: TGAGAAAGGCAATAGAGGCCATTTCACCGGGGCAAT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCGAGGGACACGTGGATaGATTTTACACCTGGCTTTT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLRGTRG*ILHLAF
Trigger: AAAAGCCAGGTGTAAAATCCATCCACGTGTCCCTCG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCGAGGGACACGTGGATaGATTTTACACCTGGCTTTT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLRGTRG*ILHLAF
Trigger: AAAAGCCAGGTGTAAAATCCATCCACGTGTCCCTCG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAGTAGGCAAATGCGATaGTGGTTGCCAGCACAATCA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLSRQMR*WLPAQS
Trigger: TGATTGTGCTGGCAACCACCATCGCATTTGCCTACT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAGTAGGCAAATGCGATaGTGGTTGCCAGCACAATCA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSRQMR*WLPAQS
Trigger: TGATTGTGCTGGCAACCACCATCGCATTTGCCTACT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCACTTGATTCACTACTaGGGTTCCATGGGTGATGGT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLHLIHY*GSMGDG
Trigger: ACCATCACCCATGGAACCCCAGTAGTGAATCAAGTG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCACTTGATTCACTACTaGGGTTCCATGGGTGATGGT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLHLIHY*GSMGDG
Trigger: ACCATCACCCATGGAACCCCAGTAGTGAATCAAGTG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGTAAAACCAAACCGATaGGCAGGAAAACTCCAGCAG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLVKPNR*AGKLQQ
Trigger: CTGCTGGAGTTTTCCTGCCCATCGGTTTGGTTTTAC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTGGCTCTTTCATGTCTaGCAAGGCAGCATCAAATCC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLWLFHV*QGSIKS
Trigger: GGATTTGATGCTGCCTTGCCAGACATGAAAGAGCCA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTTGCTGAGATCCTTCTaGAGATTTGACCGGTGTGTT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLLLRSF*RFDRCV
Trigger: AACACACCGGTCAAATCTTCAGAAGGATCTCAGCAA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTTCCAACGTGAACACTaGTTTCTGAAGGACTCCTCT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLFQREH*FLKDSS
Trigger: AGAGGAGTCCTTCAGAAATCAGTGTTCACGTTGGAA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTTCCAACGTGAACACTaGTTTCTGAAGGACTCCTCT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLFQREH*FLKDSS
Trigger: AGAGGAGTCCTTCAGAAATCAGTGTTCACGTTGGAA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTTCACTTTCCCAATCTaGTGTTCAATGGTCCGGACA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLFTFPI*CSMVRT
Trigger: TGTCCGGACCATTGAACAGCAGATTGGGAAAGTGAA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTTCACTTTCCCAATCTaGTGTTCAATGGTCCGGACA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLFTFPI*CSMVRT
Trigger: TGTCCGGACCATTGAACAGCAGATTGGGAAAGTGAA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCCCACGGCTTCAATCTaGTTCTTTATTTCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLPTASI*FFISSA
Trigger: AGCAGAGGAAATAAAGAAGCAGATTGAAGCCGTGGG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTCCCATGTCTTCAATTaGTTCTCGCAAGGTTTCTGG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLSHVFN*FSQGFW
Trigger: CCAGAAACCTTGCGAGAAGCAATTGAAGACATGGGA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTCCCATGTCTTCAATTaGTTCTCGCAAGGTTTCTGG +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSHVFN*FSQGFW
Trigger: CCAGAAACCTTGCGAGAAGCAATTGAAGACATGGGA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGATCTTACTTCTGCCTTaGCAGCCATTAGGGCAACAA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLILLLP*QPLGQQ
Trigger: TTGTTGCCCTAATGGCTGGCAAGGCAGAAGTAAGAT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGATCTTACTTCTGCCTTaGCAGCCATTAGGGCAACAA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLILLLP*QPLGQQ
Trigger: TTGTTGCCCTAATGGCTGGCAAGGCAGAAGTAAGAT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCAGCACATCCATGTTTaGTGTCTTATGCTTCAGTGC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLQHIHV*CLMLQC
Trigger: GCACTGAAGCATAAGACAGCAAACATGGATGTGCTG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTGGTTGTGGAGTCACTaGGATATGATGGGCTCTTTT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLWLWSH*DMMGSF
Trigger: AAAAGAGCCCATCATATCCCAGTGACTCCACAACCA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTTTATCACAGCTTCTTaGGTCAGAGGCTGGCTAACT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLFITAS*VRGWLT
Trigger: AGTTAGCCAGCCTCTGACCCAAGAAGCTGTGATAAA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTTTATCACAGCTTCTTaGGTCAGAGGCTGGCTAACT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLFITAS*VRGWLT
Trigger: AGTTAGCCAGCCTCTGACCCAAGAAGCTGTGATAAA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTTGTCTGCAAACTGCTaGATAGGAGCCTTTGATGTC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLLSANC*IGAFDV
Trigger: GACATCAAAGGCTCCTATCCAGCAGTTTGCAGACAA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTTGTCTGCAAACTGCTaGATAGGAGCCTTTGATGTC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLLSANC*IGAFDV
Trigger: GACATCAAAGGCTCCTATCCAGCAGTTTGCAGACAA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGCTAATACCACAGCCTaGTACAACCTGGAAATCTGT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLANTTA*YNLEIC
Trigger: ACAGATTTCCAGGTTGTACCAGGCTGTGGTATTAGC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGCTAATACCACAGCCTaGTACAACCTGGAAATCTGT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLANTTA*YNLEIC
Trigger: ACAGATTTCCAGGTTGTACCAGGCTGTGGTATTAGC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTCACACCCTTGGTCTTaGGCAATGTACTTTGGATAT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSHPWS*AMYFGY
Trigger: ATATCCAAAGTACATTGCTCAAGACCAAGGGTGTGA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTCAGCATTTCTGGAGTaGCTAAGCTTGCATTGTACT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSAFLE*LSLHCT
Trigger: AGTACAATGCAAGCTTAGTCACTCCAGAAATGCTGA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTCAGCATTTCTGGAGTaGCTAAGCTTGCATTGTACT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLSAFLE*LSLHCT
Trigger: AGTACAATGCAAGCTTAGTCACTCCAGAAATGCTGA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGATCGATCTTTCTTaGCCAAAGAAGCTTCAAAGC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLLIDLS*PKKLQS
Trigger: GCTTTGAAGCTTCTTTGGTCAAGAAAGATCGATCAG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCTGATCGATCTTTCTTaGCCAAAGAAGCTTCAAAGC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLLIDLS*PKKLQS
Trigger: GCTTTGAAGCTTCTTTGGTCAAGAAAGATCGATCAG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGACAAGTTTGACGATCTaGGAAAGGGTTGTATCTGCT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLTSLTI*ERVVSA
Trigger: AGCAGATACAACCCTTTCTCAGATCGTCAAACTTGT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGACAAGTTTGACGATCTaGGAAAGGGTTGTATCTGCT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLTSLTI*ERVVSA
Trigger: AGCAGATACAACCCTTTCTCAGATCGTCAAACTTGT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGTTTCCTGTAAAGCTTaGGGAAAAGGGAAGAAAGGA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLVSCKA*GKGKKG
Trigger: TCCTTTCTTCCCTTTTCCTCAAGCTTTACAGGAAAC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCCTTGGAGAATTTCTTaGGGTGTCATCTATTCCAAC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLPWRIS*GVIYSN
Trigger: GTTGGAATAGATGACACCTCAAGAAATTCTCCAAGG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCCTTGGAGAATTTCTTaGGGTGTCATCTATTCCAAC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLPWRIS*GVIYSN
Trigger: GTTGGAATAGATGACACCTCAAGAAATTCTCCAAGG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAATTATGGTGACTACTaGACTTCTTTGCTGAGGGGA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLNYGDY*TSLLRG
Trigger: TCCCCTCAGCAAAGAAGTGCAGTAGTCACCATAATT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAATTATGGTGACTACTaGACTTCTTTGCTGAGGGGA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLNYGDY*TSLLRG
Trigger: TCCCCTCAGCAAAGAAGTGCAGTAGTCACCATAATT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGACACACGATTTACAATaGATGCCCTCTATGGTGAAC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLTHDLQ*MPSMVN
Trigger: GTTCACCATAGAGGGCATGCATTGTAAATCGTGTGT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGACACACGATTTACAATaGATGCCCTCTATGGTGAAC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLTHDLQ*MPSMVN
Trigger: GTTCACCATAGAGGGCATGCATTGTAAATCGTGTGT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGGCTCTCTCAAACATTaGAACCAGAAGAATAACCAG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLGSLKH*NQKNNQ
Trigger: CTGGTTATTCTTCTGGTTGCAATGTTTGAGAGAGCC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGGCTCTCTCAAACATTaGAACCAGAAGAATAACCAG +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLGSLKH*NQKNNQ
Trigger: CTGGTTATTCTTCTGGTTGCAATGTTTGAGAGAGCC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAGTTTGTCTGCAAACTaGTGGATAGGAGCCTTTGAT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLSLSAN*WIGAFD
Trigger: ATCAAAGGCTCCTATCCAGCAGTTTGCAGACAAACT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAGTTTGTCTGCAAACTaGTGGATAGGAGCCTTTGAT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSLSAN*WIGAFD
Trigger: ATCAAAGGCTCCTATCCAGCAGTTTGCAGACAAACT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTTTCTGTTCGGGAGATaGTTCTATTATAGCCGGGAA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLFLFGR*FYYSRE
Trigger: TTCCCGGCTATAATAGAAGCATCTCCCGAACAGAAA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTTTCTGTTCGGGAGATaGTTCTATTATAGCCGGGAA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLFLFGR*FYYSRE
Trigger: TTCCCGGCTATAATAGAAGCATCTCCCGAACAGAAA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAATGTACTTTGGATATaGTCCCAAGGCAGAGTCAGT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLNVLWI*SQGRVS
Trigger: ACTGACTCTGCCTTGGGACCATATCCAAAGTACATT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTTGAGCAATGTACTTTaGATATGGTCCCAAGGCAGA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLLSNVL*IWSQGR
Trigger: TCTGCCTTGGGACCATATCCAAAGTACATTGCTCAA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTTGAGCAATGTACTTTaGATATGGTCCCAAGGCAGA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLLSNVL*IWSQGR
Trigger: TCTGCCTTGGGACCATATCCAAAGTACATTGCTCAA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAAGCTTCCGATGGTATaGATAATATCTCTGGGACCA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLKLPMV*IISLGP
Trigger: TGGTCCCAGAGATATTATCCATACCATCGGAAGCTT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAAGCTTCCGATGGTATaGATAATATCTCTGGGACCA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLKLPMV*IISLGP
Trigger: TGGTCCCAGAGATATTATCCATACCATCGGAAGCTT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAGGAGAGATCCATTCTaGTTAATGGAACCTGCAATC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLRRDPF*LMEPAI
Trigger: GATTGCAGGTTCCATTAACCAGAATGGATCTCTCCT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAAGCAAAGCGTATTATaGTTTCTGTTCGGGAGATGC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLKQSVL*FLFGRC
Trigger: GCATCTCCCGAACAGAAACCATAATACGCTTTGCTT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAAGCAAAGCGTATTATaGTTTCTGTTCGGGAGATGC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLKQSVL*FLFGRC
Trigger: GCATCTCCCGAACAGAAACCATAATACGCTTTGCTT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGACCGTGATAGAGGCTTaGAAAGCAAAGCGTATTATG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLTVIEA*KAKRIM
Trigger: CATAATACGCTTTGCTTTCCAAGCCTCTATCACGGT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGACCGTGATAGAGGCTTaGAAAGCAAAGCGTATTATG +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLTVIEA*KAKRIM
Trigger: CATAATACGCTTTGCTTTCCAAGCCTCTATCACGGT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGACCTTAGCAACTTTGTaGGAAGGTAGAACTTCAGCA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLTLATL*EGRTSA
Trigger: TGCTGAAGTTCTACCTTCCCACAAAGTTGCTAAGGT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAAACTCCAGCAGCGATaGGAATTCCAACCAGATTAT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLKLQQR*EFQPDY
Trigger: ATAATCTGGTTGGAATTCCCATCGCTGCTGGAGTTT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTCATCTATTCCAACGTaGACACTGATTTCTGAAGGA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSSIPT*TLISEG
Trigger: TCCTTCAGAAATCAGTGTTCACGTTGGAATAGATGA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTCATCTATTCCAACGTaGACACTGATTTCTGAAGGA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLSSIPT*TLISEG
Trigger: TCCTTCAGAAATCAGTGTTCACGTTGGAATAGATGA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTTCTTTATTTCCTCTaGTGTGATGAGATGAGGTTG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLLLYFL*CDEMRL
Trigger: CAACCTCATCTCATCACAGCAGAGGAAATAAAGAAG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGACACCCTCTATAGACTaGACACAAGAATTACAAGTC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLTPSID*TQELQV
Trigger: GACTTGTAATTCTTGTGTGCAGTCTATAGAGGGTGT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGACACCCTCTATAGACTaGACACAAGAATTACAAGTC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLTPSID*TQELQV
Trigger: GACTTGTAATTCTTGTGTGCAGTCTATAGAGGGTGT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTGTCCAGCTCCTTTTTaGAATATTTGGTTACAGCTG +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLCPAPF*NIWLQL
Trigger: CAGCTGTAACCAAATATTGCAAAAAGGAGCTGGACA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTGTCCAGCTCCTTTTTaGAATATTTGGTTACAGCTG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLCPAPF*NIWLQL
Trigger: CAGCTGTAACCAAATATTGCAAAAAGGAGCTGGACA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGTTGATTCAATTTTATaGACACAGGAAGCACACGTC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLVDSIL*TQEAHV
Trigger: GACGTGTGCTTCCTGTGTCCATAAAATTGAATCAAC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGTTGATTCAATTTTATaGACACAGGAAGCACACGTC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLVDSIL*TQEAHV
Trigger: GACGTGTGCTTCCTGTGTCCATAAAATTGAATCAAC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAGTGAAACTTTAATGTaGTGGACACCATTCACTTTC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLSETLM*WTPFTF
Trigger: GAAAGTGAATGGTGTCCATCACATTAAAGTTTCACT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR TCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAGTGAAACTTTAATGTaGTGGACACCATTCACTTTC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSETLM*WTPFTF
Trigger: GAAAGTGAATGGTGTCCATCACATTAAAGTTTCACT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTTCTCGTCTTAAATTaGGTTCAATGTTTGCTACAC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLLLVLN*VQCLLH
Trigger: GTGTAGCAAACATTGAACGCAATTTAAGACGAGAAG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCTTCTCGTCTTAAATTaGGTTCAATGTTTGCTACAC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLLLVLN*VQCLLH
Trigger: GTGTAGCAAACATTGAACGCAATTTAAGACGAGAAG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTGGCCAGGATCTTATTaGGTGATATCTTGTTACTTT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLWPGSY*VISCYF
Trigger: AAAGTAACAAGATATCACGCAATAAGATCCTGGCCA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR GCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTGGCCAGGATCTTATTaGGTGATATCTTGTTACTTT +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLWPGSY*VISCYF
Trigger: AAAGTAACAAGATATCACGCAATAAGATCCTGGCCA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGACAATAGTAGCTTCTTaGTTGTCTAGGGACACTTTA +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLTIVAS*LSRDTL
Trigger: TAAAGTGTCCCTAGACAACCAAGAAGCTACTATTGT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGACAATAGTAGCTTCTTaGTTGTCTAGGGACACTTTA +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLTIVAS*LSRDTL
Trigger: TAAAGTGTCCCTAGACAACCAAGAAGCTACTATTGT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTGGAAATTTGCCTCCTaGAACAACCTTAATGATATC +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLWKFAS*NNLNDI
Trigger: GATATCATTAAGGTTGTTCCAGGAGGCAAATTTCCA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTGGAAATTTGCCTCCTaGAACAACCTTAATGATATC +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLWKFAS*NNLNDI
Trigger: GATATCATTAAGGTTGTTCCAGGAGGCAAATTTCCA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGATACTGCTTACATACTaGAGTGTAGATAAAGCACTT +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLILLTY*SVDKAL
Trigger: AAGTGCTTTATCTACACTCCAGTATGTAAGCAGTAT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCATTGTACTTTACAATaGCTGACCTATTCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLHCTLQ*LTYSLK
Trigger: CTTTAGAGAATAGGTCAGCCATTGTAAAGTACAATG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CCA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCATTGTACTTTACAATaGCTGACCTATTCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLHCTLQ*LTYSLK
Trigger: CTTTAGAGAATAGGTCAGCCATTGTAAAGTACAATG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp AGTGTGGTGTCATCATCTTCCCGGAAGTCGCCCACCAGAAGCGAGTaGTTGTCAGGTTCACTAGTAACAACGCTGTTCAGGGAGCGCTTG +
Preference number: 5 (lower is better)
Translates to: SVVSSSSRKSPTRSE*LSGSLVTTLFRERL
Trigger: CAAGCGCTCCCTGAACAGCGTTGTTACTAGTGAACCTGACAAGCACTCGCTTCTGGTGGGCGACTTCCGGGAAGATGATGACACCACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp TGCCATTGCCAGAGCTGGGGAGTCATTGATTCCATCTCCTACCATTaGTACACGTTTGCCCTCCTCTTGGAGCTGCTTCACCTTAGCAAC +
Preference number: 5 (lower is better)
Translates to: CHCQSWGVIDSISYH*YTFALLLELLHLSN
Trigger: GTTGCTAAGGTGAAGCAGCTCCAAGAGGAGGGCAAACGTGTAGCAATGGTAGGAGATGGAATCAATGACTCCCCAGCTCTGGCAATGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 90 bp CTTCACAAGCTCCTGACTTTTTCTCCTGAGTTCCCATGTCTAAACTaGGGTCTGGGACCAGCTCCACAATCTGACTGGCACTCACCACAG +
Preference number: 5 (lower is better)
Translates to: LHKLLTFSPEFPCLN*GLGPAPQSDWHSPQ
Trigger: CTGTGGTGAGTGCCAGTCAGATTGTGGAGCTGGTCCCAGACCTCAGTTTAGACATGGGAACTCAGGAGAAAAAGTCAGGAGCTTGTGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp ATGTGTTGCTCGGATGAGGAGAGATCCATTCTGGTTAATGGAACCTaGAATCACCGTGCTGCCAGGTTTCTTAGCCACAGGCATTGCCTC +
Preference number: 5 (lower is better)
Translates to: MCCSDEERSILVNGT*NHRAARFLSHRHCL
Trigger: GAGGCAATGCCTGTGGCTAAGAAACCTGGCAGCACGGTGATTGCAGGTTCCATTAACCAGAATGGATCTCTCCTCATCCGAGCAACACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 90 bp GTATCTGCTCCCACATGTGTTGCTCGGATGAGGAGAGATCCATTCTaGTTAATGGAACCTGCAATCACCGTGCTGCCAGGTTTCTTAGCC +
Preference number: 5 (lower is better)
Translates to: VSAPTCVARMRRDPF*LMEPAITVLPGFLA
Trigger: GGCTAAGAAACCTGGCAGCACGGTGATTGCAGGTTCCATTAACCAGAATGGATCTCTCCTCATCCGAGCAACACATGTGGGAGCAGATAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 90 bp GCTTCTTGGGTCAGAGGCTGGCTAACTATGTTCAAAGGCATCTTCTaGAGAGATGAGCTGGAGGGAGAGCTGGCGGTACTTTCAACTTCA +
Preference number: 5 (lower is better)
Translates to: ASWVRGWLTMFKGIF*RDELEGELAVLSTS
Trigger: TGAAGTTGAAAGTACCGCCAGCTCTCCCTCCAGCTCATCTCTTCAGAAGATGCCTTTGAACATAGTTAGCCAGCCTCTGACCCAAGAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 90 bp ATAGGAGCCTTTGATGTCTGTGCCTCCTCCACAAGTTTGACGATCTaGGAAAGGGTTGTATCTGCTCCCACATGTGTTGCTCGGATGAGG +
Preference number: 5 (lower is better)
Translates to: IGAFDVCASSTSLTI*ERVVSAPTCVARMR
Trigger: CCTCATCCGAGCAACACATGTGGGAGCAGATACAACCCTTTCTCAGATCGTCAAACTTGTGGAGGAGGCACAGACATCAAAGGCTCCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 90 bp GCCTTGGAGAATTTCTTGAGGTGTCATCTATTCCAACGTGAACACTaGTTTCTGAAGGACTCCTCTGTCCTGTGTGGCTCCGGGGATGCA +
Preference number: 5 (lower is better)
Translates to: ALENFLRCHLFQREH*FLKDSSVLCGSGDA
Trigger: TGCATCCCCGGAGCCACACAGGACAGAGGAGTCCTTCAGAAATCAGTGTTCACGTTGGAATAGATGACACCTCAAGAAATTCTCCAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp CTGTGCCTCCTCCACAAGTTTGACGATCTGAGAAAGGGTTGTATCTaGTCCCACATGTGTTGCTCGGATGAGGAGAGATCCATTCTGGTT +
Preference number: 5 (lower is better)
Translates to: LCLLHKFDDLRKGCI*SHMCCSDEERSILV
Trigger: AACCAGAATGGATCTCTCCTCATCCGAGCAACACATGTGGGAGCAGATACAACCCTTTCTCAGATCGTCAAACTTGTGGAGGAGGCACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 90 bp GTCAGGAACACGGTATTGGTTAAGACAGGGAGGGGGTTAGCATTGTaGAGAAGAGCATCAAAGCCCATGTCATCGATAGCTTCTTGGAGG +
Preference number: 5 (lower is better)
Translates to: VRNTVLVKTGRGLAL*RRASKPMSSIASWR
Trigger: CCTCCAAGAAGCTATCGATGACATGGGCTTTGATGCTCTTCTCCACAATGCTAACCCCCTCCCTGTCTTAACCAATACCGTGTTCCTGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 90 bp GTGAACATGGTTGTGGAGTCACTGGGATATGATGGGCTCTTTTGCTaGGATCCTTCTGAAGATTTGACCGGTGTGTTCTTCAGGCGCTCA +
Preference number: 5 (lower is better)
Translates to: VNMVVESLGYDGLFC*DPSEDLTGVFFRRS
Trigger: TGAGCGCCTGAAGAACACACCGGTCAAATCTTCAGAAGGATCTCAGCAAAAGAGCCCATCATATCCCAGTGACTCCACAACCATGTTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 90 bp GGTCAGAGGCTGGCTAACTATGTTCAAAGGCATCTTCTGAAGAGATaGGCTGGAGGGAGAGCTGGCGGTACTTTCAACTTCACTTGCAAT +
Preference number: 5 (lower is better)
Translates to: GQRLANYVQRHLLKR*AGGRAGGTFNFTCN
Trigger: ATTGCAAGTGAAGTTGAAAGTACCGCCAGCTCTCCCTCCAGCTCATCTCTTCAGAAGATGCCTTTGAACATAGTTAGCCAGCCTCTGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 90 bp AAACCCAGCCTTGGAGAATTTCTTGAGGTGTCATCTATTCCAACGTaGACACTGATTTCTGAAGGACTCCTCTGTCCTGTGTGGCTCCGG +
Preference number: 5 (lower is better)
Translates to: KPSLGEFLEVSSIPT*TLISEGLLCPVWLR
Trigger: CCGGAGCCACACAGGACAGAGGAGTCCTTCAGAAATCAGTGTTCACGTTGGAATAGATGACACCTCAAGAAATTCTCCAAGGCTGGGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 90 bp AGCGCTTGTCAGACAGCAGTGAATTTATGGAGGCTCTGCTATAGTTaGCAATCCGGTCCAGCAAACCCAGCCTTGGAGAATTTCTTGAGG +
Preference number: 5 (lower is better)
Translates to: SACQTAVNLWRLCYS*QSGPANPALENFLR
Trigger: CCTCAAGAAATTCTCCAAGGCTGGGTTTGCTGGACCGGATTGTCAACTATAGCAGAGCCTCCATAAATTCACTGCTGTCTGACAAGCGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp TTATCAAAACCACATCAGCTGCTTCAATGGCTACATCTGTGCCTGTaGCTATGGCAATTCCAACGTTTGCCATTGCCAGAGCTGGGGAGT +
Preference number: 5 (lower is better)
Translates to: LSKPHQLLQWLHLCL*LWQFQRLPLPELGS
Trigger: ACTCCCCAGCTCTGGCAATGGCAAACGTTGGAATTGCCATAGGCACAGGCACAGATGTAGCCATTGAAGCAGCTGATGTGGTTTTGATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 90 bp TTAACACCAGTCACACCCTTGGTCTTGAGCAATGTACTTTGGATATaGTCCCAAGGCAGAGTCAGTGGAGCAGTAACAGTCAGGAACACG +
Preference number: 5 (lower is better)
Translates to: LTPVTPLVLSNVLWI*SQGRVSGAVTVRNT
Trigger: CGTGTTCCTGACTGTTACTGCTCCACTGACTCTGCCTTGGGACCATATCCAAAGTACATTGCTCAAGACCAAGGGTGTGACTGGTGTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 90 bp TTCACTAGTAACAACGCTGTTCAGGGAGCGCTTGTCAGACAGCAGTaGATTTATGGAGGCTCTGCTATAGTTGACAATCCGGTCCAGCAA +
Preference number: 5 (lower is better)
Translates to: FTSNNAVQGALVRQQ*IYGGSAIVDNPVQQ
Trigger: TTGCTGGACCGGATTGTCAACTATAGCAGAGCCTCCATAAATTCACTGCTGTCTGACAAGCGCTCCCTGAACAGCGTTGTTACTAGTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp CATTCCTTATCAAAACCACATCAGCTGCTTCAATGGCTACATCTGTaGCTGTGCCTATGGCAATTCCAACGTTTGCCATTGCCAGAGCTG +
Preference number: 5 (lower is better)
Translates to: HSLSKPHQLLQWLHL*LCLWQFQRLPLPEL
Trigger: CAGCTCTGGCAATGGCAAACGTTGGAATTGCCATAGGCACAGGCACAGATGTAGCCATTGAAGCAGCTGATGTGGTTTTGATAAGGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 90 bp GAAATCTTAACACCAGTCACACCCTTGGTCTTGAGCAATGTACTTTaGATATGGTCCCAAGGCAGAGTCAGTGGAGCAGTAACAGTCAGG +
Preference number: 5 (lower is better)
Translates to: EILTPVTPLVLSNVL*IWSQGRVSGAVTVR
Trigger: CCTGACTGTTACTGCTCCACTGACTCTGCCTTGGGACCATATCCAAAGTACATTGCTCAAGACCAAGGGTGTGACTGGTGTTAAGATTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 90 bp CCCAGTGAACAGGGACATGCGATACACAGAACCGTGATAGAGGCTTaGAAAGCAAAGCGTATTATGGTTTCTGTTCGGGAGATGCTTCTA +
Preference number: 5 (lower is better)
Translates to: PSEQGHAIHRTVIEA*KAKRIMVSVREMLL
Trigger: TAGAAGCATCTCCCGAACAGAAACCATAATACGCTTTGCTTTCCAAGCCTCTATCACGGTTCTGTGTATCGCATGTCCCTGTTCACTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCAGATGAAGCGGCCATaGCTGCGGATCCCATCCAGG +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLQMKRP*LRIPSR
Trigger: CCTGGATGGGATCCGCAGCAATGGCCGCTTCATCTG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 90 bp GCACTCACCACAGATGGAATTATGGTGACTACTGCACTTCTTTGCTaGGGGGAAATCTTAACACCAGTCACACCCTTGGTCTTGAGCAAT +
Preference number: 5 (lower is better)
Translates to: ALTTDGIMVTTALLC*GEILTPVTPLVLSN
Trigger: ATTGCTCAAGACCAAGGGTGTGACTGGTGTTAAGATTTCCCCTCAGCAAAGAAGTGCAGTAGTCACCATAATTCCATCTGTGGTGAGTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp CACAATCTGACTGGCACTCACCACAGATGGAATTATGGTGACTACTaGACTTCTTTGCTGAGGGGAAATCTTAACACCAGTCACACCCTT +
Preference number: 5 (lower is better)
Translates to: HNLTGTHHRWNYGDY*TSLLRGNLNTSHTL
Trigger: AAGGGTGTGACTGGTGTTAAGATTTCCCCTCAGCAAAGAAGTGCAGTAGTCACCATAATTCCATCTGTGGTGAGTGCCAGTCAGATTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp GAGCTGGCGGTACTTTCAACTTCACTTGCAATACTAACTCTGTATTaGCCCGGTGAAATGGCCTCTATTGCCTTTCTCAGCATTTCTGGA +
Preference number: 5 (lower is better)
Translates to: ELAVLSTSLAILTLY*PGEMASIAFLSISG
Trigger: TCCAGAAATGCTGAGAAAGGCAATAGAGGCCATTTCACCGGGGCAATACAGAGTTAGTATTGCAAGTGAAGTTGAAAGTACCGCCAGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp TGCAACCAGAAGAATAACCAGAGAGTAGGCAAATGCGATGGTGGTTaGCAGCACAATCAGCACATCCATGTTTGCTGTCTTATGCTTCAG +
Preference number: 5 (lower is better)
Translates to: CNQKNNQRVGKCDGG*QHNQHIHVCCLMLQ
Trigger: CTGAAGCATAAGACAGCAAACATGGATGTGCTGATTGTGCTGGCAACCACCATCGCATTTGCCTACTCTCTGGTTATTCTTCTGGTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp TGCCACAACATCCAGAAGGTCATTCCTTATCAAAACCACATCAGCTaGTTCAATGGCTACATCTGTGCCTGTGCCTATGGCAATTCCAAC +
Preference number: 5 (lower is better)
Translates to: CHNIQKVIPYQNHIS*FNGYICACAYGNSN
Trigger: GTTGGAATTGCCATAGGCACAGGCACAGATGTAGCCATTGAAGCAGCTGATGTGGTTTTGATAAGGAATGACCTTCTGGATGTTGTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 90 bp CCTTGCAGCTTTCCAACTTTTCCTTCAATGGTGCTAGTACATGAATaGCAGGTCATCCCTTCCACTTTCATCTTCAGCATGACTTCCCCT +
Preference number: 5 (lower is better)
Translates to: PCSFPTFPSMVLVHE*QVIPSTFIFSMTSP
Trigger: AGGGGAAGTCATGCTGAAGATGAAAGTGGAAGGGATGACCTGCCATTCATGTACTAGCACCATTGAAGGAAAAGTTGGAAAGCTGCAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 90 bp GCTCCAAATCCAAGCTCTCGAATAAACTCTGCTATCACTCGGGGTTaGATAACAGCTGGGTTATATCTTACTTCTGCCTTGCCAGCCATT +
Preference number: 5 (lower is better)
Translates to: APNPSSRINSAITRG*ITAGLYLTSALPAI
Trigger: AATGGCTGGCAAGGCAGAAGTAAGATATAACCCAGCTGTTATCCAACCCCGAGTGATAGCAGAGTTTATTCGAGAGCTTGGATTTGGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 90 bp GGACTCGTCCACCATAGAATGTCCTTCAATAACACGGCCATCCACTaGAAATTTGCCTCCTGGAACAACCTTAATGATATCTCCACGTTG +
Preference number: 5 (lower is better)
Translates to: GLVHHRMSFNNTAIH*KFASWNNLNDISTL
Trigger: CAACGTGGAGATATCATTAAGGTTGTTCCAGGAGGCAAATTTCCAGTGGATGGCCGTGTTATTGAAGGACATTCTATGGTGGACGAGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 90 bp CATCCAGAAGGTCATTCCTTATCAAAACCACATCAGCTGCTTCAATaGCTACATCTGTGCCTGTGCCTATGGCAATTCCAACGTTTGCCA +
Preference number: 5 (lower is better)
Translates to: HPEGHSLSKPHQLLQ*LHLCLCLWQFQRLP
Trigger: TGGCAAACGTTGGAATTGCCATAGGCACAGGCACAGATGTAGCCATTGAAGCAGCTGATGTGGTTTTGATAAGGAATGACCTTCTGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCCACCATCACAGCAGTaGGAGTGGCTAGTCCCAGTG +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLPPSQQ*EWLVPV
Trigger: CACTGGGACTAGCCACTCCAACTGCTGTGATGGTGG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCCACCATCACAGCAGTaGGAGTGGCTAGTCCCAGTG +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLPPSQQ*EWLVPV
Trigger: CACTGGGACTAGCCACTCCAACTGCTGTGATGGTGG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 90 bp GCCCCGGTGAAATGGCCTCTATTGCCTTTCTCAGCATTTCTGGAGTaGCTAAGCTTGCATTGTACTTTACAATGGCTGACCTATTCTCTA +
Preference number: 5 (lower is better)
Translates to: APVKWPLLPFSAFLE*LSLHCTLQWLTYSL
Trigger: TAGAGAATAGGTCAGCCATTGTAAAGTACAATGCAAGCTTAGTCACTCCAGAAATGCTGAGAAAGGCAATAGAGGCCATTTCACCGGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp GGCAAATGCGATGGTGGTTGCCAGCACAATCAGCACATCCATGTTTaGTGTCTTATGCTTCAGTGCTTTGTAAGCCTGAATGTAGAAGTA +
Preference number: 5 (lower is better)
Translates to: GKCDGGCQHNQHIHV*CLMLQCFVSLNVEV
Trigger: TACTTCTACATTCAGGCTTACAAAGCACTGAAGCATAAGACAGCAAACATGGATGTGCTGATTGTGCTGGCAACCACCATCGCATTTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp TCTCTCAAACATTGCAACCAGAAGAATAACCAGAGAGTAGGCAAATaGGATGGTGGTTGCCAGCACAATCAGCACATCCATGTTTGCTGT +
Preference number: 5 (lower is better)
Translates to: SLKHCNQKNNQRVGK*DGGCQHNQHIHVCC
Trigger: ACAGCAAACATGGATGTGCTGATTGTGCTGGCAACCACCATCGCATTTGCCTACTCTCTGGTTATTCTTCTGGTTGCAATGTTTGAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp AAGTTTGACGATCTGAGAAAGGGTTGTATCTGCTCCCACATGTGTTaGTCGGATGAGGAGAGATCCATTCTGGTTAATGGAACCTGCAAT +
Preference number: 5 (lower is better)
Translates to: KFDDLRKGCICSHMC*SDEERSILVNGTCN
Trigger: ATTGCAGGTTCCATTAACCAGAATGGATCTCTCCTCATCCGAGCAACACATGTGGGAGCAGATACAACCCTTTCTCAGATCGTCAAACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGTCAGGAACACGGTATaGGTTAAGACAGGGAGGGGG +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLVRNTV*VKTGRG
Trigger: CCCCCTCCCTGTCTTAACCAATACCGTGTTCCTGAC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGTCAGGAACACGGTATaGGTTAAGACAGGGAGGGGG +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLVRNTV*VKTGRG
Trigger: CCCCCTCCCTGTCTTAACCAATACCGTGTTCCTGAC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGACGTTTGCCCTCCTCTaGGAGCTGCTTCACCTTAGC +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLTFALL*ELLHLS
Trigger: GCTAAGGTGAAGCAGCTCCAAGAGGAGGGCAAACGT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGACGTTTGCCCTCCTCTaGGAGCTGCTTCACCTTAGC +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLTFALL*ELLHLS
Trigger: GCTAAGGTGAAGCAGCTCCAAGAGGAGGGCAAACGT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTGGCAATTCCAACGTTaGCCATTGCCAGAGCTGGGG +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLWQFQR*PLPELG
Trigger: CCCCAGCTCTGGCAATGGCAAACGTTGGAATTGCCA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTGGCAATTCCAACGTTaGCCATTGCCAGAGCTGGGG +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLWQFQR*PLPELG
Trigger: CCCCAGCTCTGGCAATGGCAAACGTTGGAATTGCCA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 90 bp CTGCTCCTAAAGGATGTTCACTGTTACTTTCTGCAGTCCCCACAATaGCCAGGATCTTATTGCGTGATATCTTGTTACTTTCCACGAGAA +
Preference number: 5 (lower is better)
Translates to: LLLKDVHCYFLQSPQ*PGSYCVISCYFPRE
Trigger: TTCTCGTGGAAAGTAACAAGATATCACGCAATAAGATCCTGGCCATTGTGGGGACTGCAGAAAGTAACAGTGAACATCCTTTAGGAGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGGGAGGGGGTTAGCATaGTGGAGAAGAGCATCAAAG +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLGRGLA*WRRASK
Trigger: CTTTGATGCTCTTCTCCACAATGCTAACCCCCTCCC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGGGAGGGGGTTAGCATaGTGGAGAAGAGCATCAAAG +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLGRGLA*WRRASK
Trigger: CTTTGATGCTCTTCTCCACAATGCTAACCCCCTCCC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTTCCAACGTTTGCCATaGCCAGAGCTGGGGAGTCAT +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLFQRLP*PELGSH
Trigger: ATGACTCCCCAGCTCTGGCAATGGCAAACGTTGGAA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 90 bp TTTCCACGAGAACCTTCACTTGATTCACTACTGGGGTTCCATGGGTaGTGGTTCCAGTCTTATCAAATACCACTACCTTTACCTTATGAG +
Preference number: 5 (lower is better)
Translates to: FPREPSLDSLLGFHG*WFQSYQIPLPLPYE
Trigger: CTCATAAGGTAAAGGTAGTGGTATTTGATAAGACTGGAACCATCACCCATGGAACCCCAGTAGTGAATCAAGTGAAGGTTCTCGTGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp GAAGGCTGGGAAACCCACGGCTTCAATCTGCTTCTTTATTTCCTCTaGTGTGATGAGATGAGGTTGAAAAACAATAGTAGCTTCTTGGTT +
Preference number: 5 (lower is better)
Translates to: EGWETHGFNLLLYFL*CDEMRLKNNSSFLV
Trigger: AACCAAGAAGCTACTATTGTTTTTCAACCTCATCTCATCACAGCAGAGGAAATAAAGAAGCAGATTGAAGCCGTGGGTTTCCCAGCCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGTCATCGATAGCTTCTaGGAGGGTCTTTGGAGTCTG +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLVIDSF*EGLWSL
Trigger: CAGACTCCAAAGACCCTCCAAGAAGCTATCGATGAC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCAAATGCGATGGTGGTaGCCAGCACAATCAGCACAT +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLQMRWW*PAQSAH
Trigger: ATGTGCTGATTGTGCTGGCAACCACCATCGCATTTG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCGATCTGAGAAAGGGTaGTATCTGCTCCCACATGTG +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLRSEKG*YLLPHV
Trigger: CACATGTGGGAGCAGATACAACCCTTTCTCAGATCG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGCGATCTGAGAAAGGGTaGTATCTGCTCCCACATGTG +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLRSEKG*YLLPHV
Trigger: CACATGTGGGAGCAGATACAACCCTTTCTCAGATCG...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCCAGCAAACCCAGCCTaGGAGAATTTCTTGAGGTGT +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLPANPA*ENFLRC
Trigger: ACACCTCAAGAAATTCTCCAAGGCTGGGTTTGCTGG...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 90 bp ATCTTATTGCGTGATATCTTGTTACTTTCCACGAGAACCTTCACTTaGTTCACTACTGGGGTTCCATGGGTGATGGTTCCAGTCTTATCA +
Preference number: 5 (lower is better)
Translates to: ILLRDILLLSTRTFT*FTTGVPWVMVPVLS
Trigger: TGATAAGACTGGAACCATCACCCATGGAACCCCAGTAGTGAATCAAGTGAAGGTTCTCGTGGAAAGTAACAAGATATCACGCAATAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 90 bp AAGAGCATCAAAGCCCATGTCATCGATAGCTTCTTGGAGGGTCTTTaGAGTCTGAAGTTTAGGGTCATAAATAATGGTTGCACTCTTTTC +
Preference number: 5 (lower is better)
Translates to: KSIKAHVIDSFLEGL*SLKFRVINNGCTLF
Trigger: GAAAAGAGTGCAACCATTATTTATGACCCTAAACTTCAGACTCCAAAGACCCTCCAAGAAGCTATCGATGACATGGGCTTTGATGCTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAATGCGCTGAACACCTaGCAGCTTTCCAACTTTTCC +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLNALNT*QLSNFS
Trigger: GGAAAAGTTGGAAAGCTGCAAGGTGTTCAGCGCATT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAATGCGCTGAACACCTaGCAGCTTTCCAACTTTTCC +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLNALNT*QLSNFS
Trigger: GGAAAAGTTGGAAAGCTGCAAGGTGTTCAGCGCATT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGATCCTTCTGAAGATTaGACCGGTGTGTTCTTCAGG +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLDPSED*TGVFFR
Trigger: CCTGAAGAACACACCGGTCAAATCTTCAGAAGGATC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTATCTTACTTCTGCCTaGCCAGCCATTAGGGCAACA +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLYLTSA*PAIRAT
Trigger: TGTTGCCCTAATGGCTGGCAAGGCAGAAGTAAGATA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTATCTTACTTCTGCCTaGCCAGCCATTAGGGCAACA +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLYLTSA*PAIRAT
Trigger: TGTTGCCCTAATGGCTGGCAAGGCAGAAGTAAGATA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAGAGCTGGGGAGTCATaGATTCCATCTCCTACCATT +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLRAGES*IPSPTI
Trigger: AATGGTAGGAGATGGAATCAATGACTCCCCAGCTCT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGACCAGAAGCGAGTGCTaGTCAGGTTCACTAGTAACA +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLTRSEC*SGSLVT
Trigger: TGTTACTAGTGAACCTGACAAGCACTCGCTTCTGGT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp AGTGTAGATAAAGCACTTTCAATATTGGACACACACGATTTACAATaGATGCCCTCTATGGTGAACATGGTTGTGGAGTCACTGGGATAT +
Preference number: 5 (lower is better)
Translates to: SVDKALSILDTHDLQ*MPSMVNMVVESLGY
Trigger: ATATCCCAGTGACTCCACAACCATGTTCACCATAGAGGGCATGCATTGTAAATCGTGTGTGTCCAATATTGAAAGTGCTTTATCTACACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGTCACACCCTTGGTCTaGAGCAATGTACTTTGGATA +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLVTPLV*SNVLWI
Trigger: TATCCAAAGTACATTGCTCAAGACCAAGGGTGTGAC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGACTACTGCACTTCTTaGCTGAGGGGAAATCTTAAC +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLDYCTS*LRGNLN
Trigger: GTTAAGATTTCCCCTCAGCAAAGAAGTGCAGTAGTC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGATCCCATGTCTTCAATaGCTTCTCGCAAGGTTTCTG +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLIPCLQ*LLARFL
Trigger: CAGAAACCTTGCGAGAAGCAATTGAAGACATGGGAT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGATCCCATGTCTTCAATaGCTTCTCGCAAGGTTTCTG +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLIPCLQ*LLARFL
Trigger: CAGAAACCTTGCGAGAAGCAATTGAAGACATGGGAT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTCAGCACATCCATGTTaGCTGTCTTATGCTTCAGTG +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSAHPC*LSYASV
Trigger: CACTGAAGCATAAGACAGCAAACATGGATGTGCTGA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTCAGCACATCCATGTTaGCTGTCTTATGCTTCAGTG +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLSAHPC*LSYASV
Trigger: CACTGAAGCATAAGACAGCAAACATGGATGTGCTGA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGTAATGGGGTTCACTTaGGCTCTCTCAAACATTGCA +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLVMGFT*ALSNIA
Trigger: TGCAATGTTTGAGAGAGCCAAAGTGAACCCCATTAC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGTAATGGGGTTCACTTaGGCTCTCTCAAACATTGCA +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLVMGFT*ALSNIA
Trigger: TGCAATGTTTGAGAGAGCCAAAGTGAACCCCATTAC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 90 bp AATAAAAGGGACAACAAATTCATAATGGACAGTCCTGGCAGGATCTaGCGCTCCAGAAACATAGCAGAATGCATGTTGATCATTTCTTCA +
Preference number: 5 (lower is better)
Translates to: NKRDNKFIMDSPGRI*RSRNIAECMLIISS
Trigger: TGAAGAAATGATCAACATGCATTCTGCTATGTTTCTGGAGCGTCAGATCCTGCCAGGACTGTCCATTATGAATTTGTTGTCCCTTTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGTGACTAAGCTTGCATaGTACTTTACAATGGCTGAC +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLVTKLA*YFTMAD
Trigger: GTCAGCCATTGTAAAGTACAATGCAAGCTTAGTCAC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGTGACTAAGCTTGCATaGTACTTTACAATGGCTGAC +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLVTKLA*YFTMAD
Trigger: GTCAGCCATTGTAAAGTACAATGCAAGCTTAGTCAC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAATTGCGTTCAATGTTaGCTACACAAGAAGCACAGG +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLNCVQC*LHKKHR
Trigger: CCTGTGCTTCTTGTGTAGCAAACATTGAACGCAATT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGCTGATCGATCTTTCTaGACCAAAGAAGCTTCAAAG +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLADRSF*TKEASK
Trigger: CTTTGAAGCTTCTTTGGTCAAGAAAGATCGATCAGC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGCTGATCGATCTTTCTaGACCAAAGAAGCTTCAAAG +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLADRSF*TKEASK
Trigger: CTTTGAAGCTTCTTTGGTCAAGAAAGATCGATCAGC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGTAATGAAATTAGCTTaGCAAGAGCCTCGGAGGTTT +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLVMKLA*QEPRRF
Trigger: AAACCTCCGAGGCTCTTGCAAAGCTAATTTCATTAC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGTAATGAAATTAGCTTaGCAAGAGCCTCGGAGGTTT +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLVMKLA*QEPRRF
Trigger: AAACCTCCGAGGCTCTTGCAAAGCTAATTTCATTAC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAATGATATCTCCACGTaGTACAAGTTCCACATCCAC +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLNDIST*YKFHIH
Trigger: GTGGATGTGGAACTTGTACAACGTGGAGATATCATT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAATGATATCTCCACGTaGTACAAGTTCCACATCCAC +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLNDIST*YKFHIH
Trigger: GTGGATGTGGAACTTGTACAACGTGGAGATATCATT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGAACCGTGATAGAGGCTaGGAAAGCAAAGCGTATTAT +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLNRDRG*ESKAYY
Trigger: ATAATACGCTTTGCTTTCCAAGCCTCTATCACGGTT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGAACCGTGATAGAGGCTaGGAAAGCAAAGCGTATTAT +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLNRDRG*ESKAYY
Trigger: ATAATACGCTTTGCTTTCCAAGCCTCTATCACGGTT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGTGTCCAGCTCCTTTTaGCAATATTTGGTTACAGCT +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLVSSSF*QYLVTA
Trigger: AGCTGTAACCAAATATTGCAAAAAGGAGCTGGACAC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTTCACCTTAGCAACTTaGTGGGAAGGTAGAACTTCA +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLFTLAT*WEGRTS
Trigger: TGAAGTTCTACCTTCCCACAAAGTTGCTAAGGTGAA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTTCACCTTAGCAACTTaGTGGGAAGGTAGAACTTCA +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLFTLAT*WEGRTS
Trigger: TGAAGTTCTACCTTCCCACAAAGTTGCTAAGGTGAA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTTGACAAGTCAATACTaGCCACAACATCCAGAAGGT +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLLTSQY*PQHPEG
Trigger: ACCTTCTGGATGTTGTGGCAAGTATTGACTTGTCAA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTTGACAAGTCAATACTaGCCACAACATCCAGAAGGT +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLLTSQY*PQHPEG
Trigger: ACCTTCTGGATGTTGTGGCAAGTATTGACTTGTCAA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGGCCTTGGAGAATTTCTaGAGGTGTCATCTATTCCAA +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLALENF*RCHLFQ
Trigger: TTGGAATAGATGACACCTCAAGAAATTCTCCAAGGC...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 90 bp GTTGATCATTTCTTCATTACTCATGTTCTGATTATGGTGAAGAGTTaGAAGGTGGTGATCCATAACCATCATATAGACCATCAGTCCCAT +
Preference number: 5 (lower is better)
Translates to: VDHFFITHVLIMVKS*KVVIHNHHIDHQSH
Trigger: ATGGGACTGATGGTCTATATGATGGTTATGGATCACCACCTTGCAACTCTTCACCATAATCAGAACATGAGTAATGAAGAAATGATCAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGATAGTAGCTTCTTGGTaGTCTAGGGACACTTTAATG +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLIVASW*SRDTLM
Trigger: CATTAAAGTGTCCCTAGACAACCAAGAAGCTACTAT...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGATAGTAGCTTCTTGGTaGTCTAGGGACACTTTAATG +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLIVASW*SRDTLM
Trigger: CATTAAAGTGTCCCTAGACAACCAAGAAGCTACTAT...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTATTTAATATGTGCTTaGTTAGTTGCCAGGGCCACA +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLYLICA*LVARAT
Trigger: TGTGGCCCTGGCAACTAACAAAGCACATATTAAATA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTATTTAATATGTGCTTaGTTAGTTGCCAGGGCCACA +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLYLICA*LVARAT
Trigger: TGTGGCCCTGGCAACTAACAAAGCACATATTAAATA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTCTTCTCGTCTTAAATaGCGTTCAATGTTTGCTACA +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSSRLK*RSMFAT
Trigger: TGTAGCAAACATTGAACGCAATTTAAGACGAGAAGA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTCTTCTCGTCTTAAATaGCGTTCAATGTTTGCTACA +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLSSRLK*RSMFAT
Trigger: TGTAGCAAACATTGAACGCAATTTAAGACGAGAAGA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGGAAAGACCCTCTCCATaGTTTTATTTCTCGTTTATG +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLERPSP*FYFSFM
Trigger: CATAAACGAGAAATAAAACAATGGAGAGGGTCTTTC...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp TGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGCTGTCCTTTTTGCAATATTaGGTTACAGCTGCTCCTAAA +
Preference number: 5 (lower is better)
Translates to: CSKLTVLPSVSLMKQKLLSFLQY*VTAAPK
Trigger: TTTAGGAGCAGCTGTAACCAAATATTGCAAAAAGGA...CAGCAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS-3UTR CAA 90 bp GCTTGTTCTAAACTTACTGTTCTCCCCTCTGTATCGCTAATGAAACAAAAACTGTCCTTTTTGCAATATTaGGTTACAGCTGCTCCTAAA +
Preference number: 5 (lower is better)
Translates to: ACSKLTVLPSVSLMKQKLSFLQY*VTAAPK
Trigger: TTTAGGAGCAGCTGTAACCAAATATTGCAAAAAGGA...CAGTTTTTGTTTCATTAGCGATACAGAGGGGAGAACAGTAAGTTTAGAACAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp GTGGTGTCATCATCTTCCCGGAAGTCGCCCACCAGAAGCGAGTGCTaGTCAGGTTCACTAGTAACAACGCTGTTCAGGGAGCGCTTGTCA +
Preference number: 6 (lower is better)
Translates to: VVSSSSRKSPTRSEC*SGSLVTTLFRERLS
Trigger: TGACAAGCGCTCCCTGAACAGCGTTGTTACTAGTGAACCTGACAAGCACTCGCTTCTGGTGGGCGACTTCCGGGAAGATGATGACACCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp CAGCTGCTTCAATGGCTACATCTGTGCCTGTGCCTATaGCAATTCCAACGTTTGCCATTGCCAGAGCTGGGG +
Preference number: 6 (lower is better)
Translates to: QLLQWLHLCLCL*QFQRLPLPELG
Trigger: CCCCAGCTCTGGCAATGGCAAACGTTGGAATTGCCATAGGCACAGGCACAGATGTAGCCATTGAAGCAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 72 bp TCATCTTCCCGGAAGTCGCCCACCAGAAGCGAGTGCTaGTCAGGTTCACTAGTAACAACGCTGTTCAGGGAG +
Preference number: 6 (lower is better)
Translates to: SSSRKSPTRSEC*SGSLVTTLFRE
Trigger: CTCCCTGAACAGCGTTGTTACTAGTGAACCTGACAAGCACTCGCTTCTGGTGGGCGACTTCCGGGAAGATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 72 bp TCATCATCTTCCCGGAAGTCGCCCACCAGAAGCGAGTaGTTGTCAGGTTCACTAGTAACAACGCTGTTCAGG +
Preference number: 6 (lower is better)
Translates to: SSSSRKSPTRSE*LSGSLVTTLFR
Trigger: CCTGAACAGCGTTGTTACTAGTGAACCTGACAAGCACTCGCTTCTGGTGGGCGACTTCCGGGAAGATGATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp CCCACATGTGTTGCTCGGATGAGGAGAGATCCATTCTaGTTAATGGAACCTGCAATCACCGTGCTGCCAGGT +
Preference number: 6 (lower is better)
Translates to: PTCVARMRRDPF*LMEPAITVLPG
Trigger: ACCTGGCAGCACGGTGATTGCAGGTTCCATTAACCAGAATGGATCTCTCCTCATCCGAGCAACACATGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp CTGCGGATCCCATCCAGGGTTGTAAAACCAAACCGATaGGCAGGAAAACTCCAGCAGCGATGGGAATTCCAA +
Preference number: 6 (lower is better)
Translates to: LRIPSRVVKPNR*AGKLQQRWEFQ
Trigger: TTGGAATTCCCATCGCTGCTGGAGTTTTCCTGCCCATCGGTTTGGTTTTACAACCCTGGATGGGATCCGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp TCCCAAGGCAGAGTCAGTGGAGCAGTAACAGTCAGGAACACGGTATaGGTTAAGACAGGGAGGGGGTTAGCATTGTGGAGAAGAGCATCA +
Preference number: 6 (lower is better)
Translates to: SQGRVSGAVTVRNTV*VKTGRGLALWRRAS
Trigger: TGATGCTCTTCTCCACAATGCTAACCCCCTCCCTGTCTTAACCAATACCGTGTTCCTGACTGTTACTGCTCCACTGACTCTGCCTTGGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp CAGGAAGCACACGTCATTCCTCTCACAACAAGTTCCAAGATGCCGTaGCCTTCCCCAGCGTTTTCCATCACCATAGCTCCAAATCCAAGC +
Preference number: 6 (lower is better)
Translates to: QEAHVIPLTTSSKMP*PSPAFSITIAPNPS
Trigger: GCTTGGATTTGGAGCTATGGTGATGGAAAACGCTGGGGAAGGCAACGGCATCTTGGAACTTGTTGTGAGAGGAATGACGTGTGCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp CTCCTGACTTTTTCTCCTGAGTTCCCATGTCTAAACTaGGGTCTGGGACCAGCTCCACAATCTGACTGGCAC +
Preference number: 6 (lower is better)
Translates to: LLTFSPEFPCLN*GLGPAPQSDWH
Trigger: GTGCCAGTCAGATTGTGGAGCTGGTCCCAGACCTCAGTTTAGACATGGGAACTCAGGAGAAAAAGTCAGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 72 bp TCGGATGAGGAGAGATCCATTCTGGTTAATGGAACCTaGAATCACCGTGCTGCCAGGTTTCTTAGCCACAGG +
Preference number: 6 (lower is better)
Translates to: SDEERSILVNGT*NHRAARFLSHR
Trigger: CCTGTGGCTAAGAAACCTGGCAGCACGGTGATTGCAGGTTCCATTAACCAGAATGGATCTCTCCTCATCCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 72 bp CCACATCAGCTGCTTCAATGGCTACATCTGTGCCTGTaGCTATGGCAATTCCAACGTTTGCCATTGCCAGAG +
Preference number: 6 (lower is better)
Translates to: PHQLLQWLHLCL*LWQFQRLPLPE
Trigger: CTCTGGCAATGGCAAACGTTGGAATTGCCATAGGCACAGGCACAGATGTAGCCATTGAAGCAGCTGATGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp CCATCTCCTACCATTGCTACACGTTTGCCCTCCTCTTaGAGCTGCTTCACCTTAGCAACTTTGTGGGAAGGT +
Preference number: 6 (lower is better)
Translates to: PSPTIATRLPSS*SCFTLATLWEG
Trigger: ACCTTCCCACAAAGTTGCTAAGGTGAAGCAGCTCCAAGAGGAGGGCAAACGTGTAGCAATGGTAGGAGATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 72 bp CACGTCATTCCTCTCACAACAAGTTCCAAGATGCCGTaGCCTTCCCCAGCGTTTTCCATCACCATAGCTCCA +
Preference number: 6 (lower is better)
Translates to: HVIPLTTSSKMP*PSPAFSITIAP
Trigger: TGGAGCTATGGTGATGGAAAACGCTGGGGAAGGCAACGGCATCTTGGAACTTGTTGTGAGAGGAATGACGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp TTCCAACGTTTGCCATTGCCAGAGCTGGGGAGTCATTaGTTCCATCTCCTACCATTGCTACACGTTTGCCCT +
Preference number: 6 (lower is better)
Translates to: FQRLPLPELGSH*FHLLPLLHVCP
Trigger: AGGGCAAACGTGTAGCAATGGTAGGAGATGGAATCAATGACTCCCCAGCTCTGGCAATGGCAAACGTTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp TTACTTGAGGGCAAAAGAGGTGTTTCCAGTGAGGGCTaGGCTATCACTACCAGTGGCTCTTTCATGTCTGGC +
Preference number: 6 (lower is better)
Translates to: LLEGKRGVSSEG*AITTSGSFMSG
Trigger: GCCAGACATGAAAGAGCCACTGGTAGTGATAGCTCAGCCCTCACTGGAAACACCTCTTTTGCCCTCAAGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113557.8
CDS GCA 72 bp CTCCACAAGTTTGACGATCTGAGAAAGGGTTGTATCTaGTCCCACATGTGTTGCTCGGATGAGGAGAGATCC +
Preference number: 6 (lower is better)
Translates to: LHKFDDLRKGCI*SHMCCSDEERS
Trigger: GGATCTCTCCTCATCCGAGCAACACATGTGGGAGCAGATACAACCCTTTCTCAGATCGTCAAACTTGTGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp GTCACACCCTTGGTCTTGAGCAATGTACTTTGGATATaGTCCCAAGGCAGAGTCAGTGGAGCAGTAACAGTC +
Preference number: 6 (lower is better)
Translates to: VTPLVLSNVLWI*SQGRVSGAVTV
Trigger: GACTGTTACTGCTCCACTGACTCTGCCTTGGGACCATATCCAAAGTACATTGCTCAAGACCAAGGGTGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp GACCAGCTCCACAATCTGACTGGCACTCACCACAGATaGAATTATGGTGACTACTGCACTTCTTTGCTGAGG +
Preference number: 6 (lower is better)
Translates to: DQLHNLTGTHHR*NYGDYCTSLLR
Trigger: CCTCAGCAAAGAAGTGCAGTAGTCACCATAATTCCATCTGTGGTGAGTGCCAGTCAGATTGTGGAGCTGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 72 bp AGAGTCAGTGGAGCAGTAACAGTCAGGAACACGGTATaGGTTAAGACAGGGAGGGGGTTAGCATTGTGGAGA +
Preference number: 6 (lower is better)
Translates to: RVSGAVTVRNTV*VKTGRGLALWR
Trigger: TCTCCACAATGCTAACCCCCTCCCTGTCTTAACCAATACCGTGTTCCTGACTGTTACTGCTCCACTGACTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 72 bp ATTCCAACGTTTGCCATTGCCAGAGCTGGGGAGTCATaGATTCCATCTCCTACCATTGCTACACGTTTGCCC +
Preference number: 6 (lower is better)
Translates to: IPTFAIARAGES*IPSPTIATRLP
Trigger: GGGCAAACGTGTAGCAATGGTAGGAGATGGAATCAATGACTCCCCAGCTCTGGCAATGGCAAACGTTGGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp ACAGTCAGGAACACGGTATTGGTTAAGACAGGGAGGGGGTTAGCATaGTGGAGAAGAGCATCAAAGCCCATGTCATCGATAGCTTCTTGG +
Preference number: 6 (lower is better)
Translates to: TVRNTVLVKTGRGLA*WRRASKPMSSIASW
Trigger: CCAAGAAGCTATCGATGACATGGGCTTTGATGCTCTTCTCCACAATGCTAACCCCCTCCCTGTCTTAACCAATACCGTGTTCCTGACTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp GCTACACGTTTGCCCTCCTCTTGGAGCTGCTTCACCTTAGCAACTTaGTGGGAAGGTAGAACTTCAGCAAACACCTTAGTAATGCCAACC +
Preference number: 6 (lower is better)
Translates to: ATRLPSSWSCFTLAT*WEGRTSANTLVMPT
Trigger: GGTTGGCATTACTAAGGTGTTTGCTGAAGTTCTACCTTCCCACAAAGTTGCTAAGGTGAAGCAGCTCCAAGAGGAGGGCAAACGTGTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp ATGTCTAAACTGAGGTCTGGGACCAGCTCCACAATCTaGCTGGCACTCACCACAGATGGAATTATGGTGACT +
Preference number: 6 (lower is better)
Translates to: MSKLRSGTSSTI*LALTTDGIMVT
Trigger: AGTCACCATAATTCCATCTGTGGTGAGTGCCAGTCAGATTGTGGAGCTGGTCCCAGACCTCAGTTTAGACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp TGGACACACACGATTTACAATGCATGCCCTCTATGGTaGACATGGTTGTGGAGTCACTGGGATATGATGGGC +
Preference number: 6 (lower is better)
Translates to: WTHTIYNACPLW*TWLWSHWDMMG
Trigger: GCCCATCATATCCCAGTGACTCCACAACCATGTTCACCATAGAGGGCATGCATTGTAAATCGTGTGTGTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp CTGGCTAACTATGTTCAAAGGCATCTTCTGAAGAGATaGGCTGGAGGGAGAGCTGGCGGTACTTTCAACTTC +
Preference number: 6 (lower is better)
Translates to: LANYVQRHLLKR*AGGRAGGTFNF
Trigger: GAAGTTGAAAGTACCGCCAGCTCTCCCTCCAGCTCATCTCTTCAGAAGATGCCTTTGAACATAGTTAGCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp TTACTTGAGGGCAAAAGAGGTGTTTCCAGTGAGGGCTaGGCTATCACTACCAGTGGCTCTTTCATGTCTGCT +
Preference number: 6 (lower is better)
Translates to: LLEGKRGVSSEG*AITTSGSFMSA
Trigger: AGCAGACATGAAAGAGCCACTGGTAGTGATAGCTCAGCCCTCACTGGAAACACCTCTTTTGCCCTCAAGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055941.7
CDS TCA 72 bp CAGACAGCAGTGAATTTATGGAGGCTCTGCTATAGTTaGCAATCCGGTCCAGCAAACCCAGCCTTGGAGAAT +
Preference number: 6 (lower is better)
Translates to: QTAVNLWRLCYS*QSGPANPALEN
Trigger: ATTCTCCAAGGCTGGGTTTGCTGGACCGGATTGTCAACTATAGCAGAGCCTCCATAAATTCACTGCTGTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp AACAACGCTGTTCAGGGAGCGCTTGTCAGACAGCAGTaGATTTATGGAGGCTCTGCTATAGTTGACAATCCG +
Preference number: 6 (lower is better)
Translates to: NNAVQGALVRQQ*IYGGSAIVDNP
Trigger: CGGATTGTCAACTATAGCAGAGCCTCCATAAATTCACTGCTGTCTGACAAGCGCTCCCTGAACAGCGTTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp ACGGTATTGGTTAAGACAGGGAGGGGGTTAGCATTGTaGAGAAGAGCATCAAAGCCCATGTCATCGATAGCT +
Preference number: 6 (lower is better)
Translates to: TVLVKTGRGLAL*RRASKPMSSIA
Trigger: AGCTATCGATGACATGGGCTTTGATGCTCTTCTCCACAATGCTAACCCCCTCCCTGTCTTAACCAATACCGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp CTGAGCTATCACTACCAGTGGCTCTTTCATGTCTGCTaGCAAGGCAGCATCAAATCCCATGTCTTCAATTGC +
Preference number: 6 (lower is better)
Translates to: LSYHYQWLFHVC*QGSIKSHVFNC
Trigger: GCAATTGAAGACATGGGATTTGATGCTGCCTTGCCAGCAGACATGAAAGAGCCACTGGTAGTGATAGCTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055941.7
CDS CCA 72 bp CAGGGACATGCGATACACAGAACCGTGATAGAGGCTTaGAAAGCAAAGCGTATTATGGTTTCTGTTCGGGAG +
Preference number: 6 (lower is better)
Translates to: QGHAIHRTVIEA*KAKRIMVSVRE
Trigger: CTCCCGAACAGAAACCATAATACGCTTTGCTTTCCAAGCCTCTATCACGGTTCTGTGTATCGCATGTCCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 72 bp GAGTCATTGATTCCATCTCCTACCATTGCTACACGTTaGCCCTCCTCTTGGAGCTGCTTCACCTTAGCAACT +
Preference number: 6 (lower is better)
Translates to: ESLIPSPTIATR*PSSWSCFTLAT
Trigger: AGTTGCTAAGGTGAAGCAGCTCCAAGAGGAGGGCAAACGTGTAGCAATGGTAGGAGATGGAATCAATGACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 72 bp TCAGGTTCACTAGTAACAACGCTGTTCAGGGAGCGCTaGTCAGACAGCAGTGAATTTATGGAGGCTCTGCTA +
Preference number: 6 (lower is better)
Translates to: SGSLVTTLFRER*SDSSEFMEALL
Trigger: TAGCAGAGCCTCCATAAATTCACTGCTGTCTGACAAGCGCTCCCTGAACAGCGTTGTTACTAGTGAACCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp GGAAATCTTAACACCAGTCACACCCTTGGTCTTGAGCAATGTACTTaGGATATGGTCCCAAGGCAGAGTCAGTGGAGCAGTAACAGTCAG +
Preference number: 6 (lower is better)
Translates to: GNLNTSHTLGLEQCT*DMVPRQSQWSSNSQ
Trigger: CTGACTGTTACTGCTCCACTGACTCTGCCTTGGGACCATATCCAAAGTACATTGCTCAAGACCAAGGGTGTGACTGGTGTTAAGATTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp ACTGGCACTCACCACAGATGGAATTATGGTGACTACTGCACTTCTTaGCTGAGGGGAAATCTTAACACCAGTCACACCCTTGGTCTTGAG +
Preference number: 6 (lower is better)
Translates to: TGTHHRWNYGDYCTS*LRGNLNTSHTLGLE
Trigger: CTCAAGACCAAGGGTGTGACTGGTGTTAAGATTTCCCCTCAGCAAAGAAGTGCAGTAGTCACCATAATTCCATCTGTGGTGAGTGCCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp AGCTCCAAATCCAAGCTCTCGAATAAACTCTGCTATCACTCGGGGTaGGATAACAGCTGGGTTATATCTTACTTCTGCCTTGCCAGCCAT +
Preference number: 6 (lower is better)
Translates to: SSKSKLSNKLCYHSG*DNSWVISYFCLASH
Trigger: ATGGCTGGCAAGGCAGAAGTAAGATATAACCCAGCTGTTATCCAACCCCGAGTGATAGCAGAGTTTATTCGAGAGCTTGGATTTGGAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp ATGATGGGCTCTTTTGCTGAGATCCTTCTGAAGATTTaGCCGGTGTGTTCTTCAGGCGCTCAACATCAATGG +
Preference number: 6 (lower is better)
Translates to: MMGSFAEILLKI*PVCSSGAQHQW
Trigger: CCATTGATGTTGAGCGCCTGAAGAACACACCGGTCAAATCTTCAGAAGGATCTCAGCAAAAGAGCCCATCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp TTTGATGTCTGTGCCTCCTCCACAAGTTTGACGATCTaGGAAAGGGTTGTATCTGCTCCCACATGTGTTGCT +
Preference number: 6 (lower is better)
Translates to: FDVCASSTSLTI*ERVVSAPTCVA
Trigger: AGCAACACATGTGGGAGCAGATACAACCCTTTCTCAGATCGTCAAACTTGTGGAGGAGGCACAGACATCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 72 bp GATCTGAGAAAGGGTTGTATCTGCTCCCACATGTGTTaGTCGGATGAGGAGAGATCCATTCTGGTTAATGGA +
Preference number: 6 (lower is better)
Translates to: DLRKGCICSHMC*SDEERSILVNG
Trigger: TCCATTAACCAGAATGGATCTCTCCTCATCCGAGCAACACATGTGGGAGCAGATACAACCCTTTCTCAGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 72 bp TCAAAACCACATCAGCTGCTTCAATGGCTACATCTGTaGCTGTGCCTATGGCAATTCCAACGTTTGCCATTG +
Preference number: 6 (lower is better)
Translates to: SKPHQLLQWLHL*LCLWQFQRLPL
Trigger: CAATGGCAAACGTTGGAATTGCCATAGGCACAGGCACAGATGTAGCCATTGAAGCAGCTGATGTGGTTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 72 bp ATCCAGAAGGTCATTCCTTATCAAAACCACATCAGCTaGTTCAATGGCTACATCTGTGCCTGTGCCTATGGC +
Preference number: 6 (lower is better)
Translates to: IQKVIPYQNHIS*FNGYICACAYG
Trigger: GCCATAGGCACAGGCACAGATGTAGCCATTGAAGCAGCTGATGTGGTTTTGATAAGGAATGACCTTCTGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp CCCTCCTCTTGGAGCTGCTTCACCTTAGCAACTTTGTaGGAAGGTAGAACTTCAGCAAACACCTTAGTAATG +
Preference number: 6 (lower is better)
Translates to: PSSWSCFTLATL*EGRTSANTLVM
Trigger: CATTACTAAGGTGTTTGCTGAAGTTCTACCTTCCCACAAAGTTGCTAAGGTGAAGCAGCTCCAAGAGGAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 72 bp CGATGGTGGTTGCCAGCACAATCAGCACATCCATGTTaGCTGTCTTATGCTTCAGTGCTTTGTAAGCCTGAA +
Preference number: 6 (lower is better)
Translates to: RWWLPAQSAHPC*LSYASVLCKPE
Trigger: TTCAGGCTTACAAAGCACTGAAGCATAAGACAGCAAACATGGATGTGCTGATTGTGCTGGCAACCACCATCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 72 bp TTGCCCTCCTCTTGGAGCTGCTTCACCTTAGCAACTTaGTGGGAAGGTAGAACTTCAGCAAACACCTTAGTA +
Preference number: 6 (lower is better)
Translates to: LPSSWSCFTLAT*WEGRTSANTLV
Trigger: TACTAAGGTGTTTGCTGAAGTTCTACCTTCCCACAAAGTTGCTAAGGTGAAGCAGCTCCAAGAGGAGGGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp AGGCAAATGCGATGGTGGTTGCCAGCACAATCAGCACATCCATGTTaGCTGTCTTATGCTTCAGTGCTTTGTAAGCCTGAATGTAGAAGT +
Preference number: 6 (lower is better)
Translates to: RQMRWWLPAQSAHPC*LSYASVLCKPECRS
Trigger: ACTTCTACATTCAGGCTTACAAAGCACTGAAGCATAAGACAGCAAACATGGATGTGCTGATTGTGCTGGCAACCACCATCGCATTTGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp ACAGATGGAATTATGGTGACTACTGCACTTCTTTGCTaGGGGGAAATCTTAACACCAGTCACACCCTTGGTC +
Preference number: 6 (lower is better)
Translates to: TDGIMVTTALLC*GEILTPVTPLV
Trigger: GACCAAGGGTGTGACTGGTGTTAAGATTTCCCCTCAGCAAAGAAGTGCAGTAGTCACCATAATTCCATCTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp CGTGATATCTTGTTACTTTCCACGAGAACCTTCACTTaGTTCACTACTGGGGTTCCATGGGTGATGGTTCCA +
Preference number: 6 (lower is better)
Translates to: RDILLLSTRTFT*FTTGVPWVMVP
Trigger: TGGAACCATCACCCATGGAACCCCAGTAGTGAATCAAGTGAAGGTTCTCGTGGAAAGTAACAAGATATCACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp TTCTGCAGTCCCCACAATGGCCAGGATCTTATTGCGTaGTATCTTGTTACTTTCCACGAGAACCTTCACTTG +
Preference number: 6 (lower is better)
Translates to: FCSPHNGQDLIA*YLVTFHENLHL
Trigger: CAAGTGAAGGTTCTCGTGGAAAGTAACAAGATATCACGCAATAAGATCCTGGCCATTGTGGGGACTGCAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp AATCCGGTCCAGCAAACCCAGCCTTGGAGAATTTCTTaGGGTGTCATCTATTCCAACGTGAACACTGATTTC +
Preference number: 6 (lower is better)
Translates to: NPVQQTQPWRIS*GVIYSNVNTDF
Trigger: GAAATCAGTGTTCACGTTGGAATAGATGACACCTCAAGAAATTCTCCAAGGCTGGGTTTGCTGGACCGGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 72 bp ACTGGCACTCACCACAGATGGAATTATGGTGACTACTaGACTTCTTTGCTGAGGGGAAATCTTAACACCAGT +
Preference number: 6 (lower is better)
Translates to: TGTHHRWNYGDY*TSLLRGNLNTS
Trigger: ACTGGTGTTAAGATTTCCCCTCAGCAAAGAAGTGCAGTAGTCACCATAATTCCATCTGTGGTGAGTGCCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 72 bp GATGGTGGTTGCCAGCACAATCAGCACATCCATGTTTaGTGTCTTATGCTTCAGTGCTTTGTAAGCCTGAAT +
Preference number: 6 (lower is better)
Translates to: DGGCQHNQHIHV*CLMLQCFVSLN
Trigger: ATTCAGGCTTACAAAGCACTGAAGCATAAGACAGCAAACATGGATGTGCTGATTGTGCTGGCAACCACCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 72 bp AAGAATAACCAGAGAGTAGGCAAATGCGATGGTGGTTaGCAGCACAATCAGCACATCCATGTTTGCTGTCTT +
Preference number: 6 (lower is better)
Translates to: KNNQRVGKCDGG*QHNQHIHVCCL
Trigger: AAGACAGCAAACATGGATGTGCTGATTGTGCTGGCAACCACCATCGCATTTGCCTACTCTCTGGTTATTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp CCAAGCTCTCGAATAAACTCTGCTATCACTCGGGGTTaGATAACAGCTGGGTTATATCTTACTTCTGCCTTG +
Preference number: 6 (lower is better)
Translates to: PSSRINSAITRG*ITAGLYLTSAL
Trigger: CAAGGCAGAAGTAAGATATAACCCAGCTGTTATCCAACCCCGAGTGATAGCAGAGTTTATTCGAGAGCTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 72 bp GAGAAGAGCATCAAAGCCCATGTCATCGATAGCTTCTaGGAGGGTCTTTGGAGTCTGAAGTTTAGGGTCATA +
Preference number: 6 (lower is better)
Translates to: EKSIKAHVIDSF*EGLWSLKFRVI
Trigger: TATGACCCTAAACTTCAGACTCCAAAGACCCTCCAAGAAGCTATCGATGACATGGGCTTTGATGCTCTTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 72 bp CACCACAGATGGAATTATGGTGACTACTGCACTTCTTaGCTGAGGGGAAATCTTAACACCAGTCACACCCTT +
Preference number: 6 (lower is better)
Translates to: HHRWNYGDYCTS*LRGNLNTSHTL
Trigger: AAGGGTGTGACTGGTGTTAAGATTTCCCCTCAGCAAAGAAGTGCAGTAGTCACCATAATTCCATCTGTGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp AACTTCACTTGCAATACTAACTCTGTATTGCCCCGGTaGAATGGCCTCTATTGCCTTTCTCAGCATTTCTGG +
Preference number: 6 (lower is better)
Translates to: NFTCNTNSVLPR*NGLYCLSQHFW
Trigger: CCAGAAATGCTGAGAAAGGCAATAGAGGCCATTTCACCGGGGCAATACAGAGTTAGTATTGCAAGTGAAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp GGGCCACAGAGCAGTAGAAGATCCCTTTGTGTTTTGTaGGTGTTGATTCAATTTTATGGACACAGGAAGCAC +
Preference number: 6 (lower is better)
Translates to: GPQSSRRSLCVL*VLIQFYGHRKH
Trigger: GTGCTTCCTGTGTCCATAAAATTGAATCAACACTCACAAAACACAAAGGGATCTTCTACTGCTCTGTGGCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp CTTGGAGAATTTCTTGAGGTGTCATCTATTCCAACGTaGACACTGATTTCTGAAGGACTCCTCTGTCCTGTG +
Preference number: 6 (lower is better)
Translates to: LGEFLEVSSIPT*TLISEGLLCPV
Trigger: CACAGGACAGAGGAGTCCTTCAGAAATCAGTGTTCACGTTGGAATAGATGACACCTCAAGAAATTCTCCAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 72 bp GTACTTTCAACTTCACTTGCAATACTAACTCTGTATTaGCCCGGTGAAATGGCCTCTATTGCCTTTCTCAGC +
Preference number: 6 (lower is better)
Translates to: VLSTSLAILTLY*PGEMASIAFLS
Trigger: GCTGAGAAAGGCAATAGAGGCCATTTCACCGGGGCAATACAGAGTTAGTATTGCAAGTGAAGTTGAAAGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 72 bp TACTTTCTGCAGTCCCCACAATGGCCAGGATCTTATTaGGTGATATCTTGTTACTTTCCACGAGAACCTTCA +
Preference number: 6 (lower is better)
Translates to: YFLQSPQWPGSY*VISCYFPREPS
Trigger: TGAAGGTTCTCGTGGAAAGTAACAAGATATCACGCAATAAGATCCTGGCCATTGTGGGGACTGCAGAAAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp AAATACCACTACCTTTACCTTATGAGCCATTTCCAGTaGCTCCCCACCTTTGATAAGTATGCCATTCTGAGC +
Preference number: 6 (lower is better)
Translates to: KYHYLYLMSHFQ*LPTFDKYAILS
Trigger: GCTCAGAATGGCATACTTATCAAAGGTGGGGAGCCACTGGAAATGGCTCATAAGGTAAAGGTAGTGGTATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp TTCAATATTGGTGACTTTACAGCTAATACCACAGCCTaGTACAACCTGGAAATCTGTACAGGTACCCAGGGT +
Preference number: 6 (lower is better)
Translates to: FNIGDFTANTTA*YNLEICTGTQG
Trigger: ACCCTGGGTACCTGTACAGATTTCCAGGTTGTACCAGGCTGTGGTATTAGCTGTAAAGTCACCAATATTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp AGCATTGTGGAGAAGAGCATCAAAGCCCATGTCATCGATAGCTTCTaGGAGGGTCTTTGGAGTCTGAAGTTTAGGGTCATAAATAATGGT +
Preference number: 6 (lower is better)
Translates to: SIVEKSIKAHVIDSF*EGLWSLKFRVINNG
Trigger: ACCATTATTTATGACCCTAAACTTCAGACTCCAAAGACCCTCCAAGAAGCTATCGATGACATGGGCTTTGATGCTCTTCTCCACAATGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp AACACTTGTTCTGAACTGACGTCATCACATTTTCTAGCTCATTACTaGAGGGCAAAAGAGGTGTTTCCAGTGAGGGCTGAGCTATCACTA +
Preference number: 6 (lower is better)
Translates to: NTCSELTSSHFLAHY*RAKEVFPVRAELSL
Trigger: TAGTGATAGCTCAGCCCTCACTGGAAACACCTCTTTTGCCCTCAAGTAATGAGCTAGAAAATGTGATGACGTCAGTTCAGAACAAGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp ATCACTCGGGGTTGGATAACAGCTGGGTTATATCTTACTTCTGCCTaGCCAGCCATTAGGGCAACAAGTACAGAATATATTCCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: ITRGWITAGLYLTSA*PAIRATSTEYIPSS
Trigger: AGAAGAAGGAATATATTCTGTACTTGTTGCCCTAATGGCTGGCAAGGCAGAAGTAAGATATAACCCAGCTGTTATCCAACCCCGAGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp CACTGGAAATTTGCCTCCTGGAACAACCTTAATGATATCTCCACGTaGTACAAGTTCCACATCCACTTGTTCTTCACTCAGGAGGAGATT +
Preference number: 6 (lower is better)
Translates to: HWKFASWNNLNDIST*YKFHIHLFFTQEEI
Trigger: AATCTCCTCCTGAGTGAAGAACAAGTGGATGTGGAACTTGTACAACGTGGAGATATCATTAAGGTTGTTCCAGGAGGCAAATTTCCAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp GTTTATGATCTAAGTGGTTGGCTGATCGATCTTTCTTaGCCAAAGAAGCTTCAAAGCCTAAGCTTCCGATGG +
Preference number: 6 (lower is better)
Translates to: VYDLSGWLIDLS*PKKLQSLSFRW
Trigger: CCATCGGAAGCTTAGGCTTTGAAGCTTCTTTGGTCAAGAAAGATCGATCAGCCAACCACTTAGATCATAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS TCA 72 bp GTTCCAGTCTTATCAAATACCACTACCTTTACCTTATaGGCCATTTCCAGTGGCTCCCCACCTTTGATAAGT +
Preference number: 6 (lower is better)
Translates to: VPVLSNTTTFTL*AISSGSPPLIS
Trigger: ACTTATCAAAGGTGGGGAGCCACTGGAAATGGCTCATAAGGTAAAGGTAGTGGTATTTGATAAGACTGGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp TTTCCAACTTTTCCTTCAATGGTGCTAGTACATGAATaGCAGGTCATCCCTTCCACTTTCATCTTCAGCATG +
Preference number: 6 (lower is better)
Translates to: FPTFPSMVLVHE*QVIPSTFIFSM
Trigger: CATGCTGAAGATGAAAGTGGAAGGGATGACCTGCCATTCATGTACTAGCACCATTGAAGGAAAAGTTGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp CACCATAGAATGTCCTTCAATAACACGGCCATCCACTaGAAATTTGCCTCCTGGAACAACCTTAATGATATC +
Preference number: 6 (lower is better)
Translates to: HHRMSFNNTAIH*KFASWNNLNDI
Trigger: GATATCATTAAGGTTGTTCCAGGAGGCAAATTTCCAGTGGATGGCCGTGTTATTGAAGGACATTCTATGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp AAACCAAACCGATGGGCAGGAAAACTCCAGCAGCGATaGGAATTCCAACCAGATTATAAATTAGAGCAAAGA +
Preference number: 6 (lower is better)
Translates to: KPNRWAGKLQQR*EFQPDYKLEQR
Trigger: TCTTTGCTCTAATTTATAATCTGGTTGGAATTCCCATCGCTGCTGGAGTTTTCCTGCCCATCGGTTTGGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 72 bp TTTGCCTCCTGGAACAACCTTAATGATATCTCCACGTaGTACAAGTTCCACATCCACTTGTTCTTCACTCAG +
Preference number: 6 (lower is better)
Translates to: FASWNNLNDIST*YKFHIHLFFTQ
Trigger: CTGAGTGAAGAACAAGTGGATGTGGAACTTGTACAACGTGGAGATATCATTAAGGTTGTTCCAGGAGGCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS GCA 72 bp AAAGCACTTTCAATATTGGACACACACGATTTACAATaGATGCCCTCTATGGTGAACATGGTTGTGGAGTCA +
Preference number: 6 (lower is better)
Translates to: KALSILDTHDLQ*MPSMVNMVVES
Trigger: TGACTCCACAACCATGTTCACCATAGAGGGCATGCATTGTAAATCGTGTGTGTCCAATATTGAAAGTGCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp TTACAAGTCATGCCATTTATGTTTATCACAGCTTCTTaGGTCAGAGGCTGGCTAACTATGTTCAAAGGCATC +
Preference number: 6 (lower is better)
Translates to: LQVMPFMFITAS*VRGWLTMFKGI
Trigger: GATGCCTTTGAACATAGTTAGCCAGCCTCTGACCCAAGAAGCTGTGATAAACATAAATGGCATGACTTGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CCA 72 bp AAGGATGTTCACTGTTACTTTCTGCAGTCCCCACAATaGCCAGGATCTTATTGCGTGATATCTTGTTACTTT +
Preference number: 6 (lower is better)
Translates to: KDVHCYFLQSPQ*PGSYCVISCYF
Trigger: AAAGTAACAAGATATCACGCAATAAGATCCTGGCCATTGTGGGGACTGCAGAAAGTAACAGTGAACATCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 72 bp GGTTGGATAACAGCTGGGTTATATCTTACTTCTGCCTaGCCAGCCATTAGGGCAACAAGTACAGAATATATT +
Preference number: 6 (lower is better)
Translates to: GWITAGLYLTSA*PAIRATSTEYI
Trigger: AATATATTCTGTACTTGTTGCCCTAATGGCTGGCAAGGCAGAAGTAAGATATAACCCAGCTGTTATCCAACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 72 bp ATAGGAGGTGTATCAAAGAAGGTAATGGGGTTCACTTaGGCTCTCTCAAACATTGCAACCAGAAGAATAACC +
Preference number: 6 (lower is better)
Translates to: IGGVSKKVMGFT*ALSNIATRRIT
Trigger: GGTTATTCTTCTGGTTGCAATGTTTGAGAGAGCCAAAGTGAACCCCATTACCTTCTTTGATACACCTCCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp CACACAAGAATTACAAGTCATGCCATTTATGTTTATCACAGCTTCTaGGGTCAGAGGCTGGCTAACTATGTTCAAAGGCATCTTCTGAAG +
Preference number: 6 (lower is better)
Translates to: HTRITSHAIYVYHSF*GQRLANYVQRHLLK
Trigger: CTTCAGAAGATGCCTTTGAACATAGTTAGCCAGCCTCTGACCCAAGAAGCTGTGATAAACATAAATGGCATGACTTGTAATTCTTGTGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp ACTATACTGCTTACATACTGGAGTGTAGATAAAGCACTTTCAATATaGGACACACACGATTTACAATGCATGCCCTCTATGGTGAACATG +
Preference number: 6 (lower is better)
Translates to: TILLTYWSVDKALSI*DTHDLQCMPSMVNM
Trigger: CATGTTCACCATAGAGGGCATGCATTGTAAATCGTGTGTGTCCAATATTGAAAGTGCTTTATCTACACTCCAGTATGTAAGCAGTATAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 90 bp AACAACCTTAATGATATCTCCACGTTGTACAAGTTCCACATCCACTaGTTCTTCACTCAGGAGGAGATTTTCAGAGTTCAGAGTTACAAT +
Preference number: 6 (lower is better)
Translates to: NNLNDISTLYKFHIH*FFTQEEIFRVQSYN
Trigger: ATTGTAACTCTGAACTCTGAAAATCTCCTCCTGAGTGAAGAACAAGTGGATGTGGAACTTGTACAACGTGGAGATATCATTAAGGTTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8
CDS CAA 72 bp ATCTTCAAGTTACTCTTATGTAGCAAACCTTCAATATaGGTGACTTTACAGCTAATACCACAGCCTGGTACA +
Preference number: 6 (lower is better)
Translates to: IFKLLLCSKPSI*VTLQLIPQPGT
Trigger: TGTACCAGGCTGTGGTATTAGCTGTAAAGTCACCAATATTGAAGGTTTGCTACATAAGAGTAACTTGAAGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055941.7
ENSMUST00000113557.8