Pregenerated sensors for ATP6V1FNB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090685

Ensembl transcript IDs: ENSMUST00000171317.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CAAAGGCACCATTCTTACGGAAGAATGACTCAATTCGGCACATCTTaGAGGAGACCAATTCTTGCTTTGTTGGAGGGCCCAGCTGCCAGC	+
Preference number: 5 (lower is better) Translates to: QRHHSYGRMTQFGTS*RRPILALLEGPAAS Trigger: GCTGGCAGCTGGGCCCTCCAACAAAGCAAGAATTGGTCTCCTGCAAGATGTGCCGAATTGAGTCATTCTTCCGTAAGAATGGTGCCTTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171317.2
CDS TCA 90 bp	GAGTCCCATATTTGCGCTGCCATTCGTAGCGCAACATCATCTCTTTaGGATATTCCTCCTTCCAGAAGTTTTGCCGCAGGGTGTCCATGT	+
Preference number: 5 (lower is better) Translates to: ESHICAAIRSATSSL*DIPPSRSFAAGCPC Trigger: ACATGGACACCCTGCGGCAAAACTTCTGGAAGGAGGAATATCTCAAAGAGATGATGTTGCGCTACGAATGGCAGCGCAAATATGGGACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171317.2
CDS TCA 90 bp	ATCTCGAGGGTCCAGGAGTGCAAAGGCACCATTCTTACGGAAGAATaGCTCAATTCGGCACATCTTGCAGGAGACCAATTCTTGCTTTGT	+
Preference number: 5 (lower is better) Translates to: ISRVQECKGTILTEE*LNSAHLAGDQFLLC Trigger: ACAAAGCAAGAATTGGTCTCCTGCAAGATGTGCCGAATTGAGTCATTCTTCCGTAAGAATGGTGCCTTTGCACTCCTGGACCCTCGAGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171317.2
CDS GCA 72 bp	AGGCAACAGGGTGGGCAGTTTTCGGGGCAGACGGGATaGAGCCTTAGCCTTCTGCTTGGCCTTCACCAGAGT	+
Preference number: 6 (lower is better) Translates to: RQQGGQFSGQTG*SLSLLLGLHQS Trigger: ACTCTGGTGAAGGCCAAGCAGAAGGCTAAGGCTGCATCCCGTCTGCCCCGAAAACTGCCCACCCTGTTGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171317.2
CDS TCA 72 bp	GGTAACGCGTCTCTGGCAGATCCAGTTTTCGGGTGTTaGGATACTGGTAGCGCCCCTGCAAGTCGTGGGAGA	+
Preference number: 6 (lower is better) Translates to: GNASLADPVFGC*DTGSAPASRGR Trigger: TCTCCCACGACTTGCAGGGGCGCTACCAGTATCTCAACACCCGAAAACTGGATCTGCCAGAGACGCGTTACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171317.2
CDS GCA 72 bp	AGTTTTCGGGGCAGACGGGATGCAGCCTTAGCCTTCTaGTTGGCCTTCACCAGAGTCCCATATTTGCGCTGC	+
Preference number: 6 (lower is better) Translates to: SFRGRRDAALAF*LAFTRVPYLRC Trigger: GCAGCGCAAATATGGGACTCTGGTGAAGGCCAAGCAGAAGGCTAAGGCTGCATCCCGTCTGCCCCGAAAACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171317.2
CDS CAA 72 bp	TTTCGGGGCAGACGGGATGCAGCCTTAGCCTTCTGCTaGGCCTTCACCAGAGTCCCATATTTGCGCTGCCAT	+
Preference number: 6 (lower is better) Translates to: FRGRRDAALAFC*AFTRVPYLRCH Trigger: ATGGCAGCGCAAATATGGGACTCTGGTGAAGGCCAAGCAGAAGGCTAAGGCTGCATCCCGTCTGCCCCGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171317.2
CDS CAA 72 bp	TGCAAGTCGTGGGAGATGCCTTCATACAGCAGGGCTTaGGTGTTAGGCGCAACGGGGTACATATCTGACAGA	+
Preference number: 6 (lower is better) Translates to: CKSWEMPSYSRA*VLGATGYISDR Trigger: TCTGTCAGATATGTACCCCGTTGCGCCTAACACCAAAGCCCTGCTGTATGAAGGCATCTCCCACGACTTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171317.2
CDS CAA 90 bp	GCAAAGGCACCATTCTTACGGAAGAATGACTCAATTCGGCACATCTaGCAGGAGACCAATTCTTGCTTTGTTGGAGGGCCCAGCTGCCAG	+
Preference number: 6 (lower is better) Translates to: AKAPFLRKNDSIRHI*QETNSCFVGGPSCQ Trigger: CTGGCAGCTGGGCCCTCCAACAAAGCAAGAATTGGTCTCCTGCAAGATGTGCCGAATTGAGTCATTCTTCCGTAAGAATGGTGCCTTTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171317.2
CDS CCA 72 bp	GAAGTTGGTGGTGATGGGGAACAGGTAACGCGTCTCTaGCAGATCCAGTTTTCGGGTGTTGAGATACTGGTA	+
Preference number: 6 (lower is better) Translates to: EVGGDGEQVTRL*QIQFSGVEILV Trigger: TACCAGTATCTCAACACCCGAAAACTGGATCTGCCAGAGACGCGTTACCTGTTCCCCATCACCACCAACTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171317.2
CDS TCA 72 bp	GTCCAGGAGTGCAAAGGCACCATTCTTACGGAAGAATaGCTCAATTCGGCACATCTTGCAGGAGACCAATTC	+
Preference number: 6 (lower is better) Translates to: VQECKGTILTEE*LNSAHLAGDQF Trigger: GAATTGGTCTCCTGCAAGATGTGCCGAATTGAGTCATTCTTCCGTAAGAATGGTGCCTTTGCACTCCTGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171317.2
CDS CAA 72 bp	CATCATCTCTTTGAGATATTCCTCCTTCCAGAAGTTTaGCCGCAGGGTGTCCATGTTGAGCTGCCTCGACAT	+
Preference number: 6 (lower is better) Translates to: HHLFEIFLLPEV*PQGVHVELPRH Trigger: ATGTCGAGGCAGCTCAACATGGACACCCTGCGGCAAAACTTCTGGAAGGAGGAATATCTCAAAGAGATGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171317.2
CDS CAA 72 bp	CCATTCTTACGGAAGAATGACTCAATTCGGCACATCTaGCAGGAGACCAATTCTTGCTTTGTTGGAGGGCCC	+
Preference number: 6 (lower is better) Translates to: PFLRKNDSIRHI*QETNSCFVGGP Trigger: GGGCCCTCCAACAAAGCAAGAATTGGTCTCCTGCAAGATGTGCCGAATTGAGTCATTCTTCCGTAAGAATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171317.2
CDS GCA 72 bp	CATTCTTACGGAAGAATGACTCAATTCGGCACATCTTaGAGGAGACCAATTCTTGCTTTGTTGGAGGGCCCA	+
Preference number: 6 (lower is better) Translates to: HSYGRMTQFGTS*RRPILALLEGP Trigger: TGGGCCCTCCAACAAAGCAAGAATTGGTCTCCTGCAAGATGTGCCGAATTGAGTCATTCTTCCGTAAGAATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171317.2

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